Pay0015567 (gene) Melon (Payzawat) v1

Overview
NamePay0015567
Typegene
OrganismCucumis melo L. var. inodorus cv. Payzawat (Melon (Payzawat) v1)
DescriptionRibosome biogenesis protein BRX1-like protein
Locationchr06: 25408795 .. 25410958 (+)
RNA-Seq ExpressionPay0015567
SyntenyPay0015567
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCCGCAGACGCCGCCGCTCTCTGCTGTACGCCGCAATGTTGTACGCCCTCTTTCTCCTCCAAATGAAAGGTAAACTTTCTCTATAACCTCCATTGTTATGTGCTTTACCATATTTGAAGCTTTTCTCTGTTACATTCATGTGGTTTAGCCAGTAGAAAACAAAATGGAAAGGAGATCGATAGCACGGATAGAAAATAAAAAGAGAAAAAAAAAAAAGACAACAAATTAGAAAGAGGACCTGAAGATGGGAATTGTTGGCATAACTATTATTGCCAATTCCGCCCCTCATGTGAAAATTTTTCTCAATATTCATATGGGTAAAGATTGGGAGTTTGGGACTGTTCTTCTCTGGTTTTTCTTCTTCTAGGCTTGGATGAGTTCATGCCCCTTTTAAATGTAGAATTTGAAAAAAGTATGTAACTATTTTTGTACACCCCCTCCCGGATTGGAACAAATAATTACCATAATTTCTTCTTTTCTTATGATATTTCCTTTCATAAATAGTGGCTACTTTCTTACCATCTTGAGAGGGTCCATTGTGTTGATTCAGAAAATGTAATAAGTGATGCACACTAGGGGTTGTTTGCCCAAGGTGGAATGAGATGGTTTGGGTCATGACAAACTAATTTTGTTTCTCACTTTTTTTATACCTTCATAATCTCATTTCTATTCTACCATCAATTCTTTATGCATTTCAATGTCAATCATATTTTCATTAAATCTGATTACATTTTAGTCTTTAAATAACATGTGAGACTTTAGAATTTTGAGTCTTCAAACCACTGCTCTGTGATTTTTGTTGGTTGTTGGGCTTAATATTTTCAAAATGTGCTTTTACTTGTACGACTTCATACTATGGTTGGCTATTGGATCTTAAATCATGTCTGAATTTTTTTTGTTGGAAATAACAAATTTTTTTCCTTCTTAAAGTTGTAGAATTGGGATTCTTTTGCTTTTGGATTATATTGAGTTTCTATATCTATATTTTTCTTTTTTACAACTAAAACGTTGAAGCTTTCGACCGTCGACCAGCGTCCTTCAAACAGTCCTACCAGACAAAAACAAAAAGCTACTGGACAAAACGAGAAGCGGTCGCTTGATGAAAGCGAAAAGGGTGAACAAAAATGAGAACACTTTGTTCTGTACGACCGTCGACCGTTAACCTATTGAAGTTATCCTTGTTCTTTATAGAAAATCTTAGAAGATGGATGTTTCAACATTTACCATTCATTTTTCTTTGCAGGTGGTCCTAAACAAAAAGAAAGAATTTCAATGGCAAAGGGTTGTTCTTTTTTTAAGAATAGGTGCAATGAGGTATGTTAGGTTATGTTTCATTTCATTTGAATTCGTAATATGCTTTTCTACACTCTCATGAGTCATTCATCTAAGGAAAAGTGTTATATCTTTCCAATACACCCGTAGTTATTATTTATACACCCGTGTGGGTTGACAAAGCATCTTTAAAATTATTGAGGATAGGCCATGATTATAGTTCAAGGAATTGGATCTTTCAACTTCAACATCCTGGTTATTAAGGCAATAACTTTGGTAGTATATGAATCCAAAACCTTTTTTATGTATTGAATATCAGGAAAGGTTTACAGCATCGTAGTTCAACAATATTATGATGTAATTGTTTCTTTTTCTAGAATAAGTGTTGAATGTTCTATCAAGTTTAGTCCAATTGGAATGTAAATAAGAGCAAGATTTTCTTCATTGCTGGGTAATGTTATGATGGAAAATATTATGATAGAATGGTTGCAATGGCTATTTTACTCTTTCCAGAGAACATGGTAGCATTTGCTTTTTCTTACCAGGTTGATTCAATTCTCATTTTGGTAGCTCCTATTTTCTTCGATTTTGATCTCTATTATCACTTAGTTGCATGCTTTAGATTTAATTGGCATTTTGCATAAGAAAACTAAAAGACTCTATGTTTGTTCCTATCTCAATCTACTTAGGATGATGAATTTTTTTTTTTATCTTGATTGCATTTTTGTTTTTTCAGTTCAATATTTGGTACTAGGAGAACCGGCAGCAAGTATCTTAATCAATTTTTCCTTTACTTTTCCATTTGCTTTCAGTGCAATGGAAGAATTGAAGCTTATAGGGAACTATCTGCAAGGTTCCCGTCCAATTTTGACATTTTCATCGAATTTTGA

mRNA sequence

ATGCCGCAGACGCCGCCGCTCTCTGCTGTACGCCGCAATGTTGTACGCCCTCTTTCTCCTCCAAATGAAAGCTTTCGACCGTCGACCAGCGTCCTTCAAACAGTCCTACCAGACAAAAACAAAAAGCTACTGGACAAAACGAGAAGCGGTCGCTTGATGAAAGCGAAAAGGGTGAACAAAAATGAGAACACTTTGTTCTGTGGTCCTAAACAAAAAGAAAGAATTTCAATGGCAAAGGGTTGTTCTTTTTTTAAGAATAGGTGCAATGAGTGCAATGGAAGAATTGAAGCTTATAGGGAACTATCTGCAAGGTTCCCGTCCAATTTTGACATTTTCATCGAATTTTGA

Coding sequence (CDS)

ATGCCGCAGACGCCGCCGCTCTCTGCTGTACGCCGCAATGTTGTACGCCCTCTTTCTCCTCCAAATGAAAGCTTTCGACCGTCGACCAGCGTCCTTCAAACAGTCCTACCAGACAAAAACAAAAAGCTACTGGACAAAACGAGAAGCGGTCGCTTGATGAAAGCGAAAAGGGTGAACAAAAATGAGAACACTTTGTTCTGTGGTCCTAAACAAAAAGAAAGAATTTCAATGGCAAAGGGTTGTTCTTTTTTTAAGAATAGGTGCAATGAGTGCAATGGAAGAATTGAAGCTTATAGGGAACTATCTGCAAGGTTCCCGTCCAATTTTGACATTTTCATCGAATTTTGA

Protein sequence

MPQTPPLSAVRRNVVRPLSPPNESFRPSTSVLQTVLPDKNKKLLDKTRSGRLMKAKRVNKNENTLFCGPKQKERISMAKGCSFFKNRCNECNGRIEAYRELSARFPSNFDIFIEF
Homology
[Close]
BLAST of Pay0015567 vs. ExPASy TrEMBL
Match: A0A1S4DVW8 (uncharacterized protein LOC103487553 OS=Cucumis melo OX=3656 GN=LOC103487553 PE=4 SV=1)

HSP 1 Score: 187.6 bits (475), Expect = 3.0e-44
Identity = 96/111 (86.49%), Postives = 96/111 (86.49%), Query Frame = 0 

Query: 5   PPLSAVRRNVVRPLSPPNESFRPSTSVLQTVLPDKNKKLLDKTRSGRLMKAKRVNKNENT 64
           P LSAVRR  VRPLS PNESFRPS SVLQTVLPDKNKKL DKTRSGRLMKAKRVNKNEN 
Sbjct: 2   PLLSAVRRTAVRPLSSPNESFRPSISVLQTVLPDKNKKLPDKTRSGRLMKAKRVNKNENA 61

Query: 65  LFCGPKQKERISMAKGCSFFKNRCNECNGRIEAYRELSARFPSNFDIFIEF 116
           LFCGPKQKERISMAKGCSF KNRCNECNGRIEAYRELS RFPSN      F
Sbjct: 62  LFCGPKQKERISMAKGCSFSKNRCNECNGRIEAYRELSERFPSNLTFSSNF 112

[Close]
BLAST of Pay0015567 vs. ExPASy TrEMBL
Match: A0A5A7SQ25 (Ribosome biogenesis protein BRX1-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold139G004140 PE=4 SV=1)

HSP 1 Score: 88.6 bits (218), Expect = 1.9e-14
Identity = 42/45 (93.33%), Postives = 42/45 (93.33%), Query Frame = 0 

Query: 48 RSGRLMKAKRVNKNENTLFCGPKQKERISMAKGCSFFKNRCNECN 93
          RSGRLMKAKRVNKNEN LFCGPKQKERISMAKGCSF KNRCNE N
Sbjct: 2  RSGRLMKAKRVNKNENALFCGPKQKERISMAKGCSFSKNRCNEFN 46

[Close]
BLAST of Pay0015567 vs. NCBI nr
Match: XP_016899860.1 (PREDICTED: uncharacterized protein LOC103487553 [Cucumis melo] >XP_016899861.1 PREDICTED: uncharacterized protein LOC103487553 [Cucumis melo])

HSP 1 Score: 187.6 bits (475), Expect = 6.1e-44
Identity = 96/111 (86.49%), Postives = 96/111 (86.49%), Query Frame = 0 

Query: 5   PPLSAVRRNVVRPLSPPNESFRPSTSVLQTVLPDKNKKLLDKTRSGRLMKAKRVNKNENT 64
           P LSAVRR  VRPLS PNESFRPS SVLQTVLPDKNKKL DKTRSGRLMKAKRVNKNEN 
Sbjct: 2   PLLSAVRRTAVRPLSSPNESFRPSISVLQTVLPDKNKKLPDKTRSGRLMKAKRVNKNENA 61

Query: 65  LFCGPKQKERISMAKGCSFFKNRCNECNGRIEAYRELSARFPSNFDIFIEF 116
           LFCGPKQKERISMAKGCSF KNRCNECNGRIEAYRELS RFPSN      F
Sbjct: 62  LFCGPKQKERISMAKGCSFSKNRCNECNGRIEAYRELSERFPSNLTFSSNF 112

[Close]
BLAST of Pay0015567 vs. NCBI nr
Match: KAA0031641.1 (ribosome biogenesis protein BRX1-like protein [Cucumis melo var. makuwa])

HSP 1 Score: 88.6 bits (218), Expect = 3.9e-14
Identity = 42/45 (93.33%), Postives = 42/45 (93.33%), Query Frame = 0 

Query: 48 RSGRLMKAKRVNKNENTLFCGPKQKERISMAKGCSFFKNRCNECN 93
          RSGRLMKAKRVNKNEN LFCGPKQKERISMAKGCSF KNRCNE N
Sbjct: 2  RSGRLMKAKRVNKNENALFCGPKQKERISMAKGCSFSKNRCNEFN 46

The following BLAST results are available for this feature:
BLAST of Pay0015567 vs.
Match NameE-valueIdentityDescription
BLAST of Pay0015567 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A1S4DVW83.0e-4486.49uncharacterized protein LOC103487553 OS=Cucumis melo OX=3656 GN=LOC103487553 PE=... [more]
A0A5A7SQ251.9e-1493.33Ribosome biogenesis protein BRX1-like protein OS=Cucumis melo var. makuwa OX=119... [more]
BLAST of Pay0015567 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_016899860.16.1e-4486.49PREDICTED: uncharacterized protein LOC103487553 [Cucumis melo] >XP_016899861.1 P... [more]
KAA0031641.13.9e-1493.33ribosome biogenesis protein BRX1-like protein [Cucumis melo var. makuwa][more]
BLAST of Pay0015567 vs. NCBI nr
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Melon (Payzawat) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..32

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Pay0015567.1Pay0015567.1mRNA