Pay0015276 (gene) Melon (Payzawat) v1

Overview


Name	Pay0015276
Type	gene
Organism	Cucumis melo L. var. inodorus cv. Payzawat (Melon (Payzawat) v1)
Description	Zinc finger (Ran-binding) family protein
Location	chr01: 34381159 .. 34383245 (-)
RNA-Seq Expression	Pay0015276
Synteny	Pay0015276

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATCCAATAATAACCAACTCCCTCTTTCTCAATCTATCTTATTTAATTCTTACTCTCTTTTCAAGTTTTACTTCAAAACCCTTTGCATTTGGTTTAGGTTATTCACTCGTTCTGAAGGAAGATTTAGATTTTTTTTTCATATATAAGGTACAAGTTTACATTCAAATTAGTTCTTTTTTTTTTTTTTTAATCTTAATCCATGTACTGCTAAATATTTAATTTTTGCTTCAGTACTTTAACATATATTTAATTTCGGTTGTTAATTTTATTATTGATTGTTTAAAAAAGAAATTAATGACCTATTAGCATTTAGACTATAAAATTAAATATTCTTACGTGATACTAATAATTACTATTTAATTTGAAACAAGTTATTCGAAATTTAAGAATGGAGATTGTATTAAAAATTACCATTTTAAAATTAAGCAATATTTGAATGCATGGACATTTCTTTTTCTGGAGCGTTAATACCATACTGTCATGAAAAGTTTTTCAAAATATAATTTTTGAAAAAGAAAGAGAAAAGAAAAAAATAAGAGTTTTCCACTTGATCTCACTAAATTAAGTTGCAATAAATATAGGACGGTATGTGGTTAATGAAACTTAGTTTTGCAGGTGGTCGGAGGTATGAACAGGCCGGGGGATTGGAACTGCAGATCATGCCAGCACCTGAACTTCCAACGGCGGGAGTGCTGTCAACGCTGTGGGGAATTCAAATTAGGAGGGGGGCCTGAATTAGGGGTGTTTTCCGGCAGAGCGGGAAGGTCATCGTCCTACGGCGGAGGGGTTGCTTATTCGCCGGGATCCGACGTCCGCCCCGGTGACTGGTACTGCGGAGTCACCAATTGTGGGACTCACAACTTTGCCAACCGGTCCACTTGTTTCAAATGCGGTGCGTTTAAGGATGAGTCAGCAGCATCTGCGACGGGAGGAGGAGGAGGGGGAGGAGGAGGAGGGTTTGATTTTGATGTGACGTGTCGCGCATTCAGAAGCTTTGGTAATGCCTCGTCACGTGGTGCCCCTTCTCCTTGGATGTCTGGTGATTGGATTTGTTCCAGGTTGGATTTTCAAACTCTTTAATATTATTTTTTTTTTCTTATTATACTAACATTCATATTTATACCTATATTTAATTACCTAAATATCAAAAATTACTATTGCAATTAAATTCAACCTTCTGTTTATACAATTTTATCACAAGGCTGAGGATCAAATTTTAATACCCATAGAAGTTTAGGGTCAAATTTTTACAATTGAAGCATATAGTAATTTGGAAGCATAGTTTAAAATGTTGATGTCATCAAAAAAACTATAGACCCTAGTTAAAATCTCAACTATAATCAATAATATGTACAATAAGTTATCCCTAGTCACATCTAGATTAAAATTCTTCGTGTTAATTAAAACACATTGTCAAAATTTTAGCTCGATTATTACACCACAAATTGACCCCAATGACTAAAAAAAACCTCAATTTCTCGAGGGAAGAAAGGTCAATTTAACCTAAAATGATCCTAAATGGACGGTGTTTCACCAAACAAGTGAAAAATATATCATCTCTTTGTGAACATCTTTAGTAAATATATAGTGACAAAATATTTTTTACGATGAATTTACAGGTTAGGATGCAACGTACATAACTTTGCAAGTAGAATGGAATGTTTTAGATGCAATGCTCCAAGAGACTCGTTTTAAAGATTTCAATTTCTAGTATTAATTTCATCCAAATTGAGGTTGTGGCACTCTTTTATGATGTTACATACTTTATTTCCTTTCATTTTTCATTTCATTTTGGCCGTATGCTTCCGATTTATATTTATGTTGAGTCTGTTTTAATTGTTTTACAGTTTGTTTTTGTTTTTGTTCAATTTTGATGTGATTTCTATTTTCCTTTAACTTTTCTAGTGAGTTAAACTGTTATTTAAAAAAAATTAACATGGGTATCTAACTTAACTGATATAAAATCTATATTATTATCGAGAGGTTAGAGATTTGAATATTCCTTACCTAACATGTATGGTTGAGTTGAAAAAAGTTCAAGTTCTTTCTATATAAATGAAAATCCTTTCAATCTCGGTAGAAAACTTG

mRNA sequence

ATCCAATAATAACCAACTCCCTCTTTCTCAATCTATCTTATTTAATTCTTACTCTCTTTTCAAGTTTTACTTCAAAACCCTTTGCATTTGGTTTAGGTTATTCACTCGTTCTGAAGGAAGATTTAGATTTTTTTTTCATATATAAGGTGGTCGGAGGTATGAACAGGCCGGGGGATTGGAACTGCAGATCATGCCAGCACCTGAACTTCCAACGGCGGGAGTGCTGTCAACGCTGTGGGGAATTCAAATTAGGAGGGGGGCCTGAATTAGGGGTGTTTTCCGGCAGAGCGGGAAGGTCATCGTCCTACGGCGGAGGGGTTGCTTATTCGCCGGGATCCGACGTCCGCCCCGGTGACTGGTACTGCGGAGTCACCAATTGTGGGACTCACAACTTTGCCAACCGGTCCACTTGTTTCAAATGCGGTGCGTTTAAGGATGAGTCAGCAGCATCTGCGACGGGAGGAGGAGGAGGGGGAGGAGGAGGAGGGTTTGATTTTGATGTGACGTGTCGCGCATTCAGAAGCTTTGGTAATGCCTCGTCACGTGGTGCCCCTTCTCCTTGGATGTCTGGTGATTGGATTTGTTCCAGGTTAGGATGCAACGTACATAACTTTGCAAGTAGAATGGAATGTTTTAGATGCAATGCTCCAAGAGACTCGTTTTAAAGATTTCAATTTCTAGTATTAATTTCATCCAAATTGAGGTTGTGGCACTCTTTTATGATGTTACATACTTTATTTCCTTTCATTTTTCATTTCATTTTGGCCGTATGCTTCCGATTTATATTTATGTTGAGTCTGTTTTAATTGTTTTACAGTTTGTTTTTGTTTTTGTTCAATTTTGATGTGATTTCTATTTTCCTTTAACTTTTCTAGTGAGTTAAACTGTTATTTAAAAAAAATTAACATGGGTATCTAACTTAACTGATATAAAATCTATATTATTATCGAGAGGTTAGAGATTTGAATATTCCTTACCTAACATGTATGGTTGAGTTGAAAAAAGTTCAAGTTCTTTCTATATAAATGAAAATCCTTTCAATCTCGGTAGAAAACTTG

Coding sequence (CDS)

ATGAACAGGCCGGGGGATTGGAACTGCAGATCATGCCAGCACCTGAACTTCCAACGGCGGGAGTGCTGTCAACGCTGTGGGGAATTCAAATTAGGAGGGGGGCCTGAATTAGGGGTGTTTTCCGGCAGAGCGGGAAGGTCATCGTCCTACGGCGGAGGGGTTGCTTATTCGCCGGGATCCGACGTCCGCCCCGGTGACTGGTACTGCGGAGTCACCAATTGTGGGACTCACAACTTTGCCAACCGGTCCACTTGTTTCAAATGCGGTGCGTTTAAGGATGAGTCAGCAGCATCTGCGACGGGAGGAGGAGGAGGGGGAGGAGGAGGAGGGTTTGATTTTGATGTGACGTGTCGCGCATTCAGAAGCTTTGGTAATGCCTCGTCACGTGGTGCCCCTTCTCCTTGGATGTCTGGTGATTGGATTTGTTCCAGGTTAGGATGCAACGTACATAACTTTGCAAGTAGAATGGAATGTTTTAGATGCAATGCTCCAAGAGACTCGTTTTAA

Protein sequence

MNRPGDWNCRSCQHLNFQRRECCQRCGEFKLGGGPELGVFSGRAGRSSSYGGGVAYSPGSDVRPGDWYCGVTNCGTHNFANRSTCFKCGAFKDESAASATGGGGGGGGGGFDFDVTCRAFRSFGNASSRGAPSPWMSGDWICSRLGCNVHNFASRMECFRCNAPRDSF

Homology

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BLAST of Pay0015276 vs. ExPASy Swiss-Prot
Match: O13801 (Uncharacterized RNA-binding protein C17H9.04c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=SPAC17H9.04c PE=1 SV=1)

HSP 1 Score: 64.3 bits (155), Expect = 1.5e-09
Identity = 68/254 (26.77%), Postives = 77/254 (30.31%), Query Frame = 0


Query: 3   RPGDWNCRSCQHLNFQRRECCQRC---GEFKLGGGPELGVFSGRAGRSSSYGGGVAY--- 62
           RPGDWNC  C   NFQRR  C RC   G   +        FS      +SYG G ++   
Sbjct: 343 RPGDWNCPMCGFSNFQRRTSCFRCSFPGPTHVSAATGSNTFSPDFPYGNSYGNGSSHFIA 402

Query: 63  ----------------------------------SPGSDV--RPGDWYCGVTNCGTHNFA 122
                                             S G +V  R GDW CG   CG HNFA
Sbjct: 403 NYGGSVHHSNENTMQSDLQHQNGNNAVNHHHSSRSFGGNVPFRAGDWKCGSEGCGYHNFA 462

Query: 123 NRSTCFKCGAFKDESAASATGGGG------------------------------------ 168
               C +CGA +  +A  A    G                                    
Sbjct: 463 KNVCCLRCGASRATAAVVADHASGPVNGSYSHNSYSHIPPVMSTSPPNHSVYPYSQLSIN 522

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BLAST of Pay0015276 vs. ExPASy Swiss-Prot
Match: O95218 (Zinc finger Ran-binding domain-containing protein 2 OS=Homo sapiens OX=9606 GN=ZRANB2 PE=1 SV=2)

HSP 1 Score: 50.4 bits (119), Expect = 2.2e-05
Identity = 31/104 (29.81%), Postives = 41/104 (39.42%), Query Frame = 0


Query: 62  VRPGDWYCGVTNCGTHNFANRSTCFKCGAFKDESAASATGGGGGGGGGGFDFDVTCRAFR 121
           V  GDW C    CG  NFA R++C +CG  K   A     GG                  
Sbjct: 8   VSDGDWICPDKKCGNVNFARRTSCNRCGREKTTEAKMMKAGG-----------------T 67

Query: 122 SFGNASSRGAPSPWMSGDWICSRLGCNVHNFASRMECFRCNAPR 166
             G   +  +   + + DW C    C+  N+A R EC  CN P+
Sbjct: 68  EIGKTLAEKSRGLFSANDWQCKT--CSNVNWARRSECNMCNTPK 92

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BLAST of Pay0015276 vs. ExPASy Swiss-Prot
Match: Q9R020 (Zinc finger Ran-binding domain-containing protein 2 OS=Mus musculus OX=10090 GN=Zranb2 PE=1 SV=2)

HSP 1 Score: 50.4 bits (119), Expect = 2.2e-05
Identity = 31/104 (29.81%), Postives = 41/104 (39.42%), Query Frame = 0


Query: 62  VRPGDWYCGVTNCGTHNFANRSTCFKCGAFKDESAASATGGGGGGGGGGFDFDVTCRAFR 121
           V  GDW C    CG  NFA R++C +CG  K   A     GG                  
Sbjct: 8   VSDGDWICPDKKCGNVNFARRTSCNRCGREKTTEAKMMKAGG-----------------T 67

Query: 122 SFGNASSRGAPSPWMSGDWICSRLGCNVHNFASRMECFRCNAPR 166
             G   +  +   + + DW C    C+  N+A R EC  CN P+
Sbjct: 68  EIGKTLAEKSRGLFSANDWQCKT--CSNVNWARRSECNMCNTPK 92

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BLAST of Pay0015276 vs. ExPASy Swiss-Prot
Match: Q19QU3 (Zinc finger Ran-binding domain-containing protein 2 OS=Sus scrofa OX=9823 GN=ZRANB2 PE=2 SV=1)

HSP 1 Score: 50.4 bits (119), Expect = 2.2e-05
Identity = 31/104 (29.81%), Postives = 41/104 (39.42%), Query Frame = 0


Query: 62  VRPGDWYCGVTNCGTHNFANRSTCFKCGAFKDESAASATGGGGGGGGGGFDFDVTCRAFR 121
           V  GDW C    CG  NFA R++C +CG  K   A     GG                  
Sbjct: 8   VSDGDWICPDKKCGNVNFARRTSCNRCGREKTTEAKMMKAGG-----------------T 67

Query: 122 SFGNASSRGAPSPWMSGDWICSRLGCNVHNFASRMECFRCNAPR 166
             G   +  +   + + DW C    C+  N+A R EC  CN P+
Sbjct: 68  EIGKTLAEKSRGLFSANDWQCKT--CSNVNWARRSECNMCNTPK 92

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BLAST of Pay0015276 vs. ExPASy Swiss-Prot
Match: Q5R580 (Zinc finger Ran-binding domain-containing protein 2 OS=Pongo abelii OX=9601 GN=ZRANB2 PE=2 SV=1)

HSP 1 Score: 50.4 bits (119), Expect = 2.2e-05
Identity = 31/104 (29.81%), Postives = 41/104 (39.42%), Query Frame = 0


Query: 62  VRPGDWYCGVTNCGTHNFANRSTCFKCGAFKDESAASATGGGGGGGGGGFDFDVTCRAFR 121
           V  GDW C    CG  NFA R++C +CG  K   A     GG                  
Sbjct: 8   VSDGDWICPDKKCGNVNFARRTSCNRCGREKTTEAKMMKAGG-----------------T 67

Query: 122 SFGNASSRGAPSPWMSGDWICSRLGCNVHNFASRMECFRCNAPR 166
             G   +  +   + + DW C    C+  N+A R EC  CN P+
Sbjct: 68  EIGKTLAEKSRGLFSANDWQCKT--CSNVNWARRSECNMCNTPK 92

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BLAST of Pay0015276 vs. ExPASy TrEMBL
Match: A0A5D3CJI6 (Transcription initiation factor TFIID subunit 15b-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold459G002200 PE=4 SV=1)

HSP 1 Score: 357.8 bits (917), Expect = 2.4e-95
Identity = 165/168 (98.21%), Postives = 166/168 (98.81%), Query Frame = 0


Query: 1   MNRPGDWNCRSCQHLNFQRRECCQRCGEFKLGGGPELGVFSGRAGRSSSYGGGVAYSPGS 60
           MNRPGDWNCRSCQHLNFQRRECCQRCGEFKLGGGPELGVFSGRAGRSSSYGGG+AYSPGS
Sbjct: 1   MNRPGDWNCRSCQHLNFQRRECCQRCGEFKLGGGPELGVFSGRAGRSSSYGGGIAYSPGS 60

Query: 61  DVRPGDWYCGVTNCGTHNFANRSTCFKCGAFKDESAASATGGGGGGGGGGFDFDVTCRAF 120
           DVRPGDWYCGVTNCGTHNFANRSTCFKCGAFKDESAASAT  GGGGGGGGFDFDVTCRAF
Sbjct: 61  DVRPGDWYCGVTNCGTHNFANRSTCFKCGAFKDESAASAT--GGGGGGGGFDFDVTCRAF 120

Query: 121 RSFGNASSRGAPSPWMSGDWICSRLGCNVHNFASRMECFRCNAPRDSF 169
           RSFGNASSRGAPSPWMSGDWICSRLGCNVHNFASRMECFRCNAPRDSF
Sbjct: 121 RSFGNASSRGAPSPWMSGDWICSRLGCNVHNFASRMECFRCNAPRDSF 166

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BLAST of Pay0015276 vs. ExPASy TrEMBL
Match: A0A0A0K718 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G433230 PE=4 SV=1)

HSP 1 Score: 320.1 bits (819), Expect = 5.6e-84
Identity = 151/172 (87.79%), Postives = 156/172 (90.70%), Query Frame = 0


Query: 1   MNRPGDWNCRSCQHLNFQRRECCQRCGEFKLGGGPELGVFSGRAGRSSSYGGGVAYSPGS 60
           MNRPGDWNCRSCQHLNFQRR+CCQRCGEFKLGGGPELGVFS R+GR SSYGGGV+YSPGS
Sbjct: 1   MNRPGDWNCRSCQHLNFQRRDCCQRCGEFKLGGGPELGVFSSRSGR-SSYGGGVSYSPGS 60

Query: 61  DVRPGDWYCGVTNCGTHNFANRSTCFKCGAFKDESAASATGGGGGGGGGGFDFDVTCRAF 120
           DVRPGDWYCGV NCGTHNFANRSTCFKCGAFKDESAASAT      GGGGFDFD TCRAF
Sbjct: 61  DVRPGDWYCGVGNCGTHNFANRSTCFKCGAFKDESAASAT----AAGGGGFDFDATCRAF 120

Query: 121 RSFG----NASSRGAPSPWMSGDWICSRLGCNVHNFASRMECFRCNAPRDSF 169
           RSFG    NA+SRGA SPW+SGDWICSR GCNVHNFASRMECFRCNAPRDSF
Sbjct: 121 RSFGFGSSNATSRGASSPWLSGDWICSRSGCNVHNFASRMECFRCNAPRDSF 167

[Close]

BLAST of Pay0015276 vs. ExPASy TrEMBL
Match: A0A6J1HKM2 (uncharacterized RNA-binding protein C17H9.04c-like OS=Cucurbita moschata OX=3662 GN=LOC111464408 PE=4 SV=1)

HSP 1 Score: 243.4 bits (620), Expect = 6.6e-61
Identity = 127/180 (70.56%), Postives = 132/180 (73.33%), Query Frame = 0


Query: 1   MNRPGDWNCRSCQHLNFQRRECCQRCGEFKLGGGPELGVFSGRAG----------RSSSY 60
           MNRPGDWNCRSCQHLNFQRRECCQRCGE +     +LG+F G  G           SSSY
Sbjct: 1   MNRPGDWNCRSCQHLNFQRRECCQRCGESRFLA--DLGLFGGGGGGSRGRSISSSSSSSY 60

Query: 61  GGGVAYSPGSDVRPGDWYCGVTNCGTHNFANRSTCFKCGAFKDESAASATGGGGGGGGGG 120
           GG    SPGSDVRPGDWYCGV NCGTHNFANRS+CF CGAFKDESAA+A         GG
Sbjct: 61  GG--VASPGSDVRPGDWYCGVANCGTHNFANRSSCFVCGAFKDESAATA-------ARGG 120

Query: 121 FDFDVTCRAFRSFGNAS--SRGAPSPWMSGDWICSRLGCNVHNFASRMECFRCNAPRDSF 169
           FDFDV  R  RSFG  S  SRG  S W SGDWICSR GCNVHNFASRMECFRCNAPRDSF
Sbjct: 121 FDFDVAPRGSRSFGFGSNGSRGG-SSWKSGDWICSRSGCNVHNFASRMECFRCNAPRDSF 168

[Close]

BLAST of Pay0015276 vs. ExPASy TrEMBL
Match: A0A6J1DB61 (transcription initiation factor TFIID subunit 15-like OS=Momordica charantia OX=3673 GN=LOC111018697 PE=4 SV=1)

HSP 1 Score: 236.9 bits (603), Expect = 6.2e-59
Identity = 122/173 (70.52%), Postives = 133/173 (76.88%), Query Frame = 0


Query: 1   MNRPGDWNCRSCQHLNFQRRECCQRCGEFKLG---GGPELGVFSGRAGRSSSYGGGVAYS 60
           MNRPGDW+CRSCQHLNFQRRECCQRCG+ K G   GG    + +GR+   SSYGG    S
Sbjct: 1   MNRPGDWHCRSCQHLNFQRRECCQRCGDSKFGVFAGGGGGRLATGRSSVPSSYGG--VAS 60

Query: 61  PGSDVRPGDWYCGVTNCGTHNFANRSTCFKCGAFKDESAASATGGGGGGGGGGFDFDVTC 120
           PGSDVRPGDWYCGV NCGTHNFA+RS+CFKCGAFKDESAA+     G G GGGFDFD++ 
Sbjct: 61  PGSDVRPGDWYCGVGNCGTHNFASRSSCFKCGAFKDESAAA-----GAGAGGGFDFDMS- 120

Query: 121 RAFRSFG---NASSRGAPSPWMSGDWICSRLGCNVHNFASRMECFRCNAPRDS 168
           RA R FG   NAS  G  S W SGDWIC+R GCN HNFASRMECFRCN PRDS
Sbjct: 121 RASRGFGFGTNASRAG--SSWKSGDWICTRSGCNEHNFASRMECFRCNDPRDS 163

[Close]

BLAST of Pay0015276 vs. ExPASy TrEMBL
Match: A0A6J1KI84 (uncharacterized RNA-binding protein C17H9.04c-like OS=Cucurbita maxima OX=3661 GN=LOC111494659 PE=4 SV=1)

HSP 1 Score: 236.1 bits (601), Expect = 1.1e-58
Identity = 124/182 (68.13%), Postives = 129/182 (70.88%), Query Frame = 0


Query: 1   MNRPGDWNCRSCQHLNFQRRECCQRCGEFKLGGGPELGVFSG------------RAGRSS 60
           MNRPGDWNCRSCQHLNFQRRECCQRCGE +     +LGVF G             +  SS
Sbjct: 1   MNRPGDWNCRSCQHLNFQRRECCQRCGESRFLA--DLGVFGGGSRGRSISSSSSSSSSSS 60

Query: 61  SYGGGVAYSPGSDVRPGDWYCGVTNCGTHNFANRSTCFKCGAFKDESAASATGGGGGGGG 120
           SYGG    SPGSDVRPGDWYCGV NCGTHNFANRS+CF CGAFKDESAA+A         
Sbjct: 61  SYGG--VASPGSDVRPGDWYCGVANCGTHNFANRSSCFVCGAFKDESAATA-------AR 120

Query: 121 GGFDFDVTCRAFRS--FGNASSRGAPSPWMSGDWICSRLGCNVHNFASRMECFRCNAPRD 169
           GGFD DV  R  RS  FG   SRG  S W SGDWICSR GCNVHNFASRMECFRCNAPRD
Sbjct: 121 GGFDSDVAPRGSRSFGFGTNGSRGG-SSWKSGDWICSRSGCNVHNFASRMECFRCNAPRD 170

[Close]

BLAST of Pay0015276 vs. NCBI nr
Match: KAA0058772.1 (transcription initiation factor TFIID subunit 15b-like [Cucumis melo var. makuwa] >TYK10566.1 transcription initiation factor TFIID subunit 15b-like [Cucumis melo var. makuwa])

HSP 1 Score: 357.8 bits (917), Expect = 5.0e-95
Identity = 165/168 (98.21%), Postives = 166/168 (98.81%), Query Frame = 0


Query: 1   MNRPGDWNCRSCQHLNFQRRECCQRCGEFKLGGGPELGVFSGRAGRSSSYGGGVAYSPGS 60
           MNRPGDWNCRSCQHLNFQRRECCQRCGEFKLGGGPELGVFSGRAGRSSSYGGG+AYSPGS
Sbjct: 1   MNRPGDWNCRSCQHLNFQRRECCQRCGEFKLGGGPELGVFSGRAGRSSSYGGGIAYSPGS 60

Query: 61  DVRPGDWYCGVTNCGTHNFANRSTCFKCGAFKDESAASATGGGGGGGGGGFDFDVTCRAF 120
           DVRPGDWYCGVTNCGTHNFANRSTCFKCGAFKDESAASAT  GGGGGGGGFDFDVTCRAF
Sbjct: 61  DVRPGDWYCGVTNCGTHNFANRSTCFKCGAFKDESAASAT--GGGGGGGGFDFDVTCRAF 120

Query: 121 RSFGNASSRGAPSPWMSGDWICSRLGCNVHNFASRMECFRCNAPRDSF 169
           RSFGNASSRGAPSPWMSGDWICSRLGCNVHNFASRMECFRCNAPRDSF
Sbjct: 121 RSFGNASSRGAPSPWMSGDWICSRLGCNVHNFASRMECFRCNAPRDSF 166

[Close]

BLAST of Pay0015276 vs. NCBI nr
Match: XP_031745273.1 (zinc finger Ran-binding domain-containing protein 2-like [Cucumis sativus])

HSP 1 Score: 320.1 bits (819), Expect = 1.2e-83
Identity = 151/172 (87.79%), Postives = 156/172 (90.70%), Query Frame = 0


Query: 1   MNRPGDWNCRSCQHLNFQRRECCQRCGEFKLGGGPELGVFSGRAGRSSSYGGGVAYSPGS 60
           MNRPGDWNCRSCQHLNFQRR+CCQRCGEFKLGGGPELGVFS R+GR SSYGGGV+YSPGS
Sbjct: 1   MNRPGDWNCRSCQHLNFQRRDCCQRCGEFKLGGGPELGVFSSRSGR-SSYGGGVSYSPGS 60

Query: 61  DVRPGDWYCGVTNCGTHNFANRSTCFKCGAFKDESAASATGGGGGGGGGGFDFDVTCRAF 120
           DVRPGDWYCGV NCGTHNFANRSTCFKCGAFKDESAASAT      GGGGFDFD TCRAF
Sbjct: 61  DVRPGDWYCGVGNCGTHNFANRSTCFKCGAFKDESAASAT----AAGGGGFDFDATCRAF 120

Query: 121 RSFG----NASSRGAPSPWMSGDWICSRLGCNVHNFASRMECFRCNAPRDSF 169
           RSFG    NA+SRGA SPW+SGDWICSR GCNVHNFASRMECFRCNAPRDSF
Sbjct: 121 RSFGFGSSNATSRGASSPWLSGDWICSRSGCNVHNFASRMECFRCNAPRDSF 167

[Close]

BLAST of Pay0015276 vs. NCBI nr
Match: XP_038899251.1 (uncharacterized RNA-binding protein C17H9.04c-like [Benincasa hispida] >XP_038899252.1 uncharacterized RNA-binding protein C17H9.04c-like [Benincasa hispida])

HSP 1 Score: 278.9 bits (712), Expect = 2.9e-71
Identity = 136/170 (80.00%), Postives = 137/170 (80.59%), Query Frame = 0


Query: 1   MNRPGDWNCRSCQHLNFQRRECCQRCGEFKLGGGPELGVFSGRAGRSSSYGGGVAYSPGS 60
           MNRPGDWNCRSCQHLNFQRRECCQRCGE KLG   ELGVF GR     S  GGVAYSPGS
Sbjct: 1   MNRPGDWNCRSCQHLNFQRRECCQRCGELKLGA--ELGVFGGRGRAIPSSYGGVAYSPGS 60

Query: 61  DVRPGDWYCGVTNCGTHNFANRSTCFKCGAFKDESAASATGGGGGGGGGGFDFDVTCRAF 120
           DVRPGDWYCGV NCGTHNFANRSTCFKCGAFKDESAA+A        GGGFDFDVTCR  
Sbjct: 61  DVRPGDWYCGVGNCGTHNFANRSTCFKCGAFKDESAAAAC-------GGGFDFDVTCRGS 120

Query: 121 RSFGNASSRG--APSPWMSGDWICSRLGCNVHNFASRMECFRCNAPRDSF 169
           RSFG  SS G    S WMSGDWICSR GCNVHNFASRMECFRCNAPRD F
Sbjct: 121 RSFGFGSSNGLRGGSSWMSGDWICSRSGCNVHNFASRMECFRCNAPRDLF 161

[Close]

BLAST of Pay0015276 vs. NCBI nr
Match: KAE8646450.1 (hypothetical protein Csa_016580 [Cucumis sativus])

HSP 1 Score: 267.3 bits (682), Expect = 8.9e-68
Identity = 128/149 (85.91%), Postives = 133/149 (89.26%), Query Frame = 0


Query: 1   MNRPGDWNCRSCQHLNFQRRECCQRCGEFKLGGGPELGVFSGRAGRSSSYGGGVAYSPGS 60
           MNRPGDWNCRSCQHLNFQRR+CCQRCGEFKLGGGPELGVFS R+GR SSYGGGV+YSPGS
Sbjct: 1   MNRPGDWNCRSCQHLNFQRRDCCQRCGEFKLGGGPELGVFSSRSGR-SSYGGGVSYSPGS 60

Query: 61  DVRPGDWYCGVTNCGTHNFANRSTCFKCGAFKDESAASATGGGGGGGGGGFDFDVTCRAF 120
           DVRPGDWYCGV NCGTHNFANRSTCFKCGAFKDESAASAT      GGGGFDFD TCRAF
Sbjct: 61  DVRPGDWYCGVGNCGTHNFANRSTCFKCGAFKDESAASAT----AAGGGGFDFDATCRAF 120

Query: 121 RSFG----NASSRGAPSPWMSGDWICSRL 146
           RSFG    NA+SRGA SPW+SGDWICS L
Sbjct: 121 RSFGFGSSNATSRGASSPWLSGDWICSSL 144

[Close]

BLAST of Pay0015276 vs. NCBI nr
Match: XP_022964373.1 (uncharacterized RNA-binding protein C17H9.04c-like [Cucurbita moschata] >KAG7025771.1 hypothetical protein SDJN02_12269 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 243.4 bits (620), Expect = 1.4e-60
Identity = 127/180 (70.56%), Postives = 132/180 (73.33%), Query Frame = 0


Query: 1   MNRPGDWNCRSCQHLNFQRRECCQRCGEFKLGGGPELGVFSGRAG----------RSSSY 60
           MNRPGDWNCRSCQHLNFQRRECCQRCGE +     +LG+F G  G           SSSY
Sbjct: 1   MNRPGDWNCRSCQHLNFQRRECCQRCGESRFLA--DLGLFGGGGGGSRGRSISSSSSSSY 60

Query: 61  GGGVAYSPGSDVRPGDWYCGVTNCGTHNFANRSTCFKCGAFKDESAASATGGGGGGGGGG 120
           GG    SPGSDVRPGDWYCGV NCGTHNFANRS+CF CGAFKDESAA+A         GG
Sbjct: 61  GG--VASPGSDVRPGDWYCGVANCGTHNFANRSSCFVCGAFKDESAATA-------ARGG 120

Query: 121 FDFDVTCRAFRSFGNAS--SRGAPSPWMSGDWICSRLGCNVHNFASRMECFRCNAPRDSF 169
           FDFDV  R  RSFG  S  SRG  S W SGDWICSR GCNVHNFASRMECFRCNAPRDSF
Sbjct: 121 FDFDVAPRGSRSFGFGSNGSRGG-SSWKSGDWICSRSGCNVHNFASRMECFRCNAPRDSF 168

[Close]

BLAST of Pay0015276 vs. TAIR 10
Match: AT3G15680.1 (Ran BP2/NZF zinc finger-like superfamily protein )

HSP 1 Score: 214.2 bits (544), Expect = 8.3e-56
Identity = 109/170 (64.12%), Postives = 122/170 (71.76%), Query Frame = 0


Query: 1   MNRPGDWNCRSCQHLNFQRRECCQRCGEFKLG----GGPELGVFSGRAGRSSSYGGGVAY 60
           M+RPGDWNCRSC HLNFQRR+ CQRCG+ + G    GG + G F GRA   S++G    +
Sbjct: 1   MSRPGDWNCRSCSHLNFQRRDSCQRCGDSRSGPGGVGGLDFGNFGGRA--MSAFG----F 60

Query: 61  SPGSDVRPGDWYCGVTNCGTHNFANRSTCFKCGAFKDESAASATGGGGGGGGGGFDFDVT 120
           + GSDVRPGDWYC V NCGTHNFA+RSTCFKCG FKDE+ A   GGGGGG GG   FD  
Sbjct: 61  TTGSDVRPGDWYCTVGNCGTHNFASRSTCFKCGTFKDETGA---GGGGGGIGGPAMFDAD 120

Query: 121 CRAFRSFGNASSRGAPSPWMSGDWICSRLGCNVHNFASRMECFRCNAPRD 167
               R  GN    G  S W SGDWIC+R+GCN HNFASRMECFRCNAPRD
Sbjct: 121 IMRSRVPGN----GGRSSWKSGDWICTRIGCNEHNFASRMECFRCNAPRD 157

[Close]

BLAST of Pay0015276 vs. TAIR 10
Match: AT5G25490.1 (Ran BP2/NZF zinc finger-like superfamily protein )

HSP 1 Score: 185.3 bits (469), Expect = 4.1e-47
Identity = 99/172 (57.56%), Postives = 114/172 (66.28%), Query Frame = 0


Query: 1   MNRPGDWNCRSCQHLNFQRRECCQRCGEFKLGGGPELGVFSGRAGR--SSSYGGGVAYSP 60
           MNRPGDWNCR C HLNFQRR+ CQRC E +  GG    + SG  GR  SSS+G    ++ 
Sbjct: 1   MNRPGDWNCRLCSHLNFQRRDSCQRCREPR-PGGISTDLLSGFGGRPVSSSFG----FNT 60

Query: 61  GSDVRPGDWYCGVTNCGTHNFANRSTCFKCGAFKDESAASATGGGGGGGGGGFDFDV-TC 120
           G DVRPGDWYC + +CGTHNFANRS+CFKCGA KDE + S+         G  D +V   
Sbjct: 61  GPDVRPGDWYCNLGDCGTHNFANRSSCFKCGAAKDEFSCSS----AAATTGFMDMNVGPR 120

Query: 121 RAFRSFGNASSRG---APSPWMSGDWICSRLGCNVHNFASRMECFRCNAPRD 167
           R    FG +SS G     SPW SGDWIC R GCN HNFASR ECFRCNAP++
Sbjct: 121 RGLFGFGGSSSGGGGTGRSPWKSGDWICPRSGCNEHNFASRSECFRCNAPKE 163

[Close]

BLAST of Pay0015276 vs. TAIR 10
Match: AT2G26695.1 (Ran BP2/NZF zinc finger-like superfamily protein )

HSP 1 Score: 128.3 bits (321), Expect = 6.0e-30
Identity = 62/162 (38.27%), Postives = 82/162 (50.62%), Query Frame = 0


Query: 5   GDWNCRSCQHLNFQRRECCQRCGEFKLGGGPELGVFSGRAGRSSSYGGGVAYSPGSDVRP 64
           GDW C +CQH NF++RE CQ+CG  K GG         R                ++V  
Sbjct: 6   GDWLCGACQHANFKKRESCQKCGYPKFGGVDVSTYLYNR----------------TEVMA 65

Query: 65  GDWYCGVTNCGTHNFANRSTCFKCGAFKDESAASATGGGGGGGGGGFDFDVTCRAFRSFG 124
           GDWYCG  NCG+HN+A+R++C++CG  K E      G                    ++G
Sbjct: 66  GDWYCGALNCGSHNYASRTSCYRCGMIKVEYTEQYYGA----------------QMVAYG 125

Query: 125 NASSRGAPSPWMSGDWICSRLGCNVHNFASRMECFRCNAPRD 167
           N      P  W +GDW+C R+GC VHN+ASR ECF+C   RD
Sbjct: 126 N-DGAACPPGWKTGDWVCPRVGCGVHNYASRAECFKCKTTRD 134

[Close]

BLAST of Pay0015276 vs. TAIR 10
Match: AT2G17975.1 (zinc finger (Ran-binding) family protein )

HSP 1 Score: 61.2 bits (147), Expect = 9.0e-10
Identity = 63/219 (28.77%), Postives = 81/219 (36.99%), Query Frame = 0


Query: 3   RPGDWNCRSCQHLNFQRRECCQRCGEFKLGGGPELGVFSGRAGRSSSYGGGVAY------ 62
           R GDW C  C + N+  RE C++CG+ K     E+   S  A   +S    + Y      
Sbjct: 48  RIGDWICTGCTNNNYASREKCKKCGQSK-----EVAALSALAIPGASLQTHLHYFTRGPE 107

Query: 63  ---SPGS---------------DVRPGDWYCGVTNCGTHNFANRSTCFKC--------GA 122
               PGS               + R GDW C    CG HN+++R  C KC        G 
Sbjct: 108 SHDQPGSLLAFSNATNQASVHKEWRSGDWIC---RCGFHNYSSRIQCKKCNEIAPLALGT 167

Query: 123 FKDESAASATGGGGGGGGGGFDFDVTCRAF------RSFGNASSRGAPSP---------- 167
            +  S A A          G+    T  A        S G  S+   P P          
Sbjct: 168 KRLASEALAHEWDSKRLNQGYTSMQTQSAIYASFPGMSLGRVSNWQLPLPFLQQHSTPAL 227

[Close]

BLAST of Pay0015276 vs. TAIR 10
Match: AT1G70650.1 (Ran BP2/NZF zinc finger-like superfamily protein )

HSP 1 Score: 42.7 bits (99), Expect = 3.3e-04
Identity = 28/98 (28.57%), Postives = 38/98 (38.78%), Query Frame = 0


Query: 3   RPGDWNCRSCQHLNFQRRECCQRCGEFKLGGGPELGVFSGRAGRSSSYGGGVAYSPGSDV 62
           + GDW C++C  LNF +   C RC +      P L                        +
Sbjct: 279 KKGDWICQTCNFLNFSKNTRCLRCKD-----KPTL----------------------RQI 338

Query: 63  RPGDWYCGVTNCGTHNFANRSTCFKCGAFKDESAASAT 101
            PG+W C   +C   NF   S C KC   K + AA+ T
Sbjct: 339 NPGEWEC--ESCNYINFRRNSICLKCD-HKRQKAANVT 346

The following BLAST results are available for this feature:

BLAST of Pay0015276 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
O13801	1.5e-09	26.77	Uncharacterized RNA-binding protein C17H9.04c OS=Schizosaccharomyces pombe (stra...	[more]
O95218	2.2e-05	29.81	Zinc finger Ran-binding domain-containing protein 2 OS=Homo sapiens OX=9606 GN=Z...	[more]
Q9R020	2.2e-05	29.81	Zinc finger Ran-binding domain-containing protein 2 OS=Mus musculus OX=10090 GN=...	[more]
Q19QU3	2.2e-05	29.81	Zinc finger Ran-binding domain-containing protein 2 OS=Sus scrofa OX=9823 GN=ZRA...	[more]
Q5R580	2.2e-05	29.81	Zinc finger Ran-binding domain-containing protein 2 OS=Pongo abelii OX=9601 GN=Z...	[more]

BLAST of Pay0015276 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3CJI6	2.4e-95	98.21	Transcription initiation factor TFIID subunit 15b-like OS=Cucumis melo var. maku...	[more]
A0A0A0K718	5.6e-84	87.79	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G433230 PE=4 SV=1	[more]
A0A6J1HKM2	6.6e-61	70.56	uncharacterized RNA-binding protein C17H9.04c-like OS=Cucurbita moschata OX=3662...	[more]
A0A6J1DB61	6.2e-59	70.52	transcription initiation factor TFIID subunit 15-like OS=Momordica charantia OX=...	[more]
A0A6J1KI84	1.1e-58	68.13	uncharacterized RNA-binding protein C17H9.04c-like OS=Cucurbita maxima OX=3661 G...	[more]

BLAST of Pay0015276 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0058772.1	5.0e-95	98.21	transcription initiation factor TFIID subunit 15b-like [Cucumis melo var. makuwa...	[more]
XP_031745273.1	1.2e-83	87.79	zinc finger Ran-binding domain-containing protein 2-like [Cucumis sativus]	[more]
XP_038899251.1	2.9e-71	80.00	uncharacterized RNA-binding protein C17H9.04c-like [Benincasa hispida] >XP_03889...	[more]
KAE8646450.1	8.9e-68	85.91	hypothetical protein Csa_016580 [Cucumis sativus]	[more]
XP_022964373.1	1.4e-60	70.56	uncharacterized RNA-binding protein C17H9.04c-like [Cucurbita moschata] >KAG7025...	[more]

BLAST of Pay0015276 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G15680.1	8.3e-56	64.12	Ran BP2/NZF zinc finger-like superfamily protein	[more]
AT5G25490.1	4.1e-47	57.56	Ran BP2/NZF zinc finger-like superfamily protein	[more]
AT2G26695.1	6.0e-30	38.27	Ran BP2/NZF zinc finger-like superfamily protein	[more]
AT2G17975.1	9.0e-10	28.77	zinc finger (Ran-binding) family protein	[more]
AT1G70650.1	3.3e-04	28.57	Ran BP2/NZF zinc finger-like superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (Payzawat) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001876	Zinc finger, RanBP2-type	SMART	SM00547	zf_4	coord: 138..164 e-value: 6.4E-8 score: 42.3 coord: 5..29 e-value: 0.096 score: 19.9 coord: 65..91 e-value: 2.9E-4 score: 30.2
IPR001876	Zinc finger, RanBP2-type	PFAM	PF00641	zf-RanBP	coord: 63..90 e-value: 6.2E-7 score: 28.6 coord: 137..165 e-value: 3.7E-9 score: 35.7
IPR001876	Zinc finger, RanBP2-type	PROSITE	PS01358	ZF_RANBP2_1	coord: 7..26
IPR001876	Zinc finger, RanBP2-type	PROSITE	PS01358	ZF_RANBP2_1	coord: 140..161
IPR001876	Zinc finger, RanBP2-type	PROSITE	PS01358	ZF_RANBP2_1	coord: 67..88
IPR001876	Zinc finger, RanBP2-type	PROSITE	PS50199	ZF_RANBP2_2	coord: 63..94 score: 10.037277
IPR001876	Zinc finger, RanBP2-type	PROSITE	PS50199	ZF_RANBP2_2	coord: 3..32 score: 8.87418
IPR001876	Zinc finger, RanBP2-type	PROSITE	PS50199	ZF_RANBP2_2	coord: 136..167 score: 10.138906
None	No IPR available	GENE3D	4.10.1060.10		coord: 58..95 e-value: 8.4E-12 score: 46.2 coord: 130..167 e-value: 2.2E-12 score: 48.0 coord: 2..31 e-value: 1.1E-7 score: 33.0
None	No IPR available	PANTHER	PTHR23111	ZINC FINGER PROTEIN	coord: 1..167
None	No IPR available	PANTHER	PTHR23111:SF80	BNAA03G57490D PROTEIN	coord: 1..167
IPR036443	Zinc finger, RanBP2-type superfamily	SUPERFAMILY	90209	Ran binding protein zinc finger-like	coord: 2..32
IPR036443	Zinc finger, RanBP2-type superfamily	SUPERFAMILY	90209	Ran binding protein zinc finger-like	coord: 132..166
IPR036443	Zinc finger, RanBP2-type superfamily	SUPERFAMILY	90209	Ran binding protein zinc finger-like	coord: 59..95

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Pay0015276.2	Pay0015276.2	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006413	translational initiation
molecular_function	GO:0046872	metal ion binding
molecular_function	GO:0003743	translation initiation factor activity