Pay0015208 (gene) Melon (Payzawat) v1

Overview


Name	Pay0015208
Type	gene
Organism	Cucumis melo L. var. inodorus cv. Payzawat (Melon (Payzawat) v1)
Description	Reverse transcriptase
Location	chr05: 14727657 .. 14728349 (-)
RNA-Seq Expression	Pay0015208
Synteny	Pay0015208

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexonpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTGGATACTAGAGAGGTTGATGTATCCCTGTCATTAGAACCAGTGGTAAGGGACTATCCGGATGTTTTTTCTGAAGAGCTTCCAGGGTTACCTCCTCATAGAGAGATTGAGTTTGCCATAGAGCTGGAGCCAGGTACGATTCCTATATCCAGAGCCCCATACAGAATGGCCCCAGCAGAATTGAAGGAACTGAAAGTGCAGCTACAGGAGTTGCTTGATAAAGGCTTCATTCGACCGAGTGTGTCACCTTTTGGTGCGGTAGTTTTATTTGTTAAGAAGAAGGATGGATCGATGCGCCTATGCATTGACTATAGGGAGTTGAATAAGGTAACCGTTAAGAACAGATATCCCTTGCCCAAGATCGACGATCTATTTGACCAGTTACAGGGAGCTACAGTGTTCTCTAAGATTGATCTTCGATCAGGATATCATCAGCTGAGGATTAAGGATGGTGATGTACCGAAGACAGCCTTTCGTTCCAGATACGGACACTATGAGTTTATTGTGATGTCTTTTGGTTTGACGAATGCTCCAGCAGTGTTTATGGACTTGATGAACAAAGTGTTTAGGGAGTTCCTAGACACTTTTGTGATCGTGTTTATTGATGATATTTTGATATATTCCAAGACAGAGGCCGAGCATGAGGAGCATTTACGTATGGTTCTGCAAACCCTTCGGGATAATAAATGA

mRNA sequence

ATGGTGGATACTAGAGAGGTTGATGTATCCCTGTCATTAGAACCAGTGGTAAGGGACTATCCGGATGTTTTTTCTGAAGAGCTTCCAGGGTTACCTCCTCATAGAGAGATTGAGTTTGCCATAGAGCTGGAGCCAGGTACGATTCCTATATCCAGAGCCCCATACAGAATGGCCCCAGCAGAATTGAAGGAACTGAAAGTGCAGCTACAGGAGTTGCTTGATAAAGGCTTCATTCGACCGAGTGTGTCACCTTTTGGTGCGGTAGTTTTATTTGTTAAGAAGAAGGATGGATCGATGCGCCTATGCATTGACTATAGGGAGTTGAATAAGGTAACCGTTAAGAACAGATATCCCTTGCCCAAGATCGACGATCTATTTGACCAGTTACAGGGAGCTACAGTGTTCTCTAAGATTGATCTTCGATCAGGATATCATCAGCTGAGGATTAAGGATGGTGATGTACCGAAGACAGCCTTTCGTTCCAGATACGGACACTATGAGTTTATTGTGATGTCTTTTGGTTTGACGAATGCTCCAGCAGTGTTTATGGACTTGATGAACAAAGTGTTTAGGGAGTTCCTAGACACTTTTGTGATCGTGTTTATTGATGATATTTTGATATATTCCAAGACAGAGGCCGAGCATGAGGAGCATTTACGTATGGTTCTGCAAACCCTTCGGGATAATAAATGA

Coding sequence (CDS)

ATGGTGGATACTAGAGAGGTTGATGTATCCCTGTCATTAGAACCAGTGGTAAGGGACTATCCGGATGTTTTTTCTGAAGAGCTTCCAGGGTTACCTCCTCATAGAGAGATTGAGTTTGCCATAGAGCTGGAGCCAGGTACGATTCCTATATCCAGAGCCCCATACAGAATGGCCCCAGCAGAATTGAAGGAACTGAAAGTGCAGCTACAGGAGTTGCTTGATAAAGGCTTCATTCGACCGAGTGTGTCACCTTTTGGTGCGGTAGTTTTATTTGTTAAGAAGAAGGATGGATCGATGCGCCTATGCATTGACTATAGGGAGTTGAATAAGGTAACCGTTAAGAACAGATATCCCTTGCCCAAGATCGACGATCTATTTGACCAGTTACAGGGAGCTACAGTGTTCTCTAAGATTGATCTTCGATCAGGATATCATCAGCTGAGGATTAAGGATGGTGATGTACCGAAGACAGCCTTTCGTTCCAGATACGGACACTATGAGTTTATTGTGATGTCTTTTGGTTTGACGAATGCTCCAGCAGTGTTTATGGACTTGATGAACAAAGTGTTTAGGGAGTTCCTAGACACTTTTGTGATCGTGTTTATTGATGATATTTTGATATATTCCAAGACAGAGGCCGAGCATGAGGAGCATTTACGTATGGTTCTGCAAACCCTTCGGGATAATAAATGA

Protein sequence

MVDTREVDVSLSLEPVVRDYPDVFSEELPGLPPHREIEFAIELEPGTIPISRAPYRMAPAELKELKVQLQELLDKGFIRPSVSPFGAVVLFVKKKDGSMRLCIDYRELNKVTVKNRYPLPKIDDLFDQLQGATVFSKIDLRSGYHQLRIKDGDVPKTAFRSRYGHYEFIVMSFGLTNAPAVFMDLMNKVFREFLDTFVIVFIDDILIYSKTEAEHEEHLRMVLQTLRDNK

Homology

[Close]

BLAST of Pay0015208 vs. ExPASy Swiss-Prot
Match: Q99315 (Transposon Ty3-G Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=TY3B-G PE=1 SV=3)

HSP 1 Score: 168.3 bits (425), Expect = 1.0e-40
Identity = 88/212 (41.51%), Postives = 131/212 (61.79%), Query Frame = 0


Query: 20  YPDVFSEELPGLPP---HREIEFAIELEPGTIPISRAPYRMAPAELKELKVQLQELLDKG 79
           Y ++   +LP  P    +  ++  IE++PG       PY +     +E+   +Q+LLD  
Sbjct: 564 YREIIRNDLPPRPADINNIPVKHDIEIKPGARLPRLQPYHVTEKNEQEINKIVQKLLDNK 623

Query: 80  FIRPSVSPFGAVVLFVKKKDGSMRLCIDYRELNKVTVKNRYPLPKIDDLFDQLQGATVFS 139
           FI PS SP  + V+ V KKDG+ RLC+DYR LNK T+ + +PLP+ID+L  ++  A +F+
Sbjct: 624 FIVPSKSPCSSPVVLVPKKDGTFRLCVDYRTLNKATISDPFPLPRIDNLLSRIGNAQIFT 683

Query: 140 KIDLRSGYHQLRIKDGDVPKTAFRSRYGHYEFIVMSFGLTNAPAVFMDLMNKVFREFLDT 199
            +DL SGYHQ+ ++  D  KTAF +  G YE+ VM FGL NAP+ F   M   FR+    
Sbjct: 684 TLDLHSGYHQIPMEPKDRYKTAFVTPSGKYEYTVMPFGLVNAPSTFARYMADTFRDL--R 743

Query: 200 FVIVFIDDILIYSKTEAEHEEHLRMVLQTLRD 229
           FV V++DDILI+S++  EH +HL  VL+ L++
Sbjct: 744 FVNVYLDDILIFSESPEEHWKHLDTVLERLKN 773

[Close]

BLAST of Pay0015208 vs. ExPASy Swiss-Prot
Match: Q7LHG5 (Transposon Ty3-I Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=TY3B-I PE=1 SV=2)

HSP 1 Score: 168.3 bits (425), Expect = 1.0e-40
Identity = 88/212 (41.51%), Postives = 131/212 (61.79%), Query Frame = 0


Query: 20  YPDVFSEELPGLPP---HREIEFAIELEPGTIPISRAPYRMAPAELKELKVQLQELLDKG 79
           Y ++   +LP  P    +  ++  IE++PG       PY +     +E+   +Q+LLD  
Sbjct: 590 YREIIRNDLPPRPADINNIPVKHDIEIKPGARLPRLQPYHVTEKNEQEINKIVQKLLDNK 649

Query: 80  FIRPSVSPFGAVVLFVKKKDGSMRLCIDYRELNKVTVKNRYPLPKIDDLFDQLQGATVFS 139
           FI PS SP  + V+ V KKDG+ RLC+DYR LNK T+ + +PLP+ID+L  ++  A +F+
Sbjct: 650 FIVPSKSPCSSPVVLVPKKDGTFRLCVDYRTLNKATISDPFPLPRIDNLLSRIGNAQIFT 709

Query: 140 KIDLRSGYHQLRIKDGDVPKTAFRSRYGHYEFIVMSFGLTNAPAVFMDLMNKVFREFLDT 199
            +DL SGYHQ+ ++  D  KTAF +  G YE+ VM FGL NAP+ F   M   FR+    
Sbjct: 710 TLDLHSGYHQIPMEPKDRYKTAFVTPSGKYEYTVMPFGLVNAPSTFARYMADTFRDL--R 769

Query: 200 FVIVFIDDILIYSKTEAEHEEHLRMVLQTLRD 229
           FV V++DDILI+S++  EH +HL  VL+ L++
Sbjct: 770 FVNVYLDDILIFSESPEEHWKHLDTVLERLKN 799

[Close]

BLAST of Pay0015208 vs. ExPASy Swiss-Prot
Match: P0CT41 (Transposon Tf2-12 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=Tf2-12 PE=3 SV=1)

HSP 1 Score: 162.2 bits (409), Expect = 7.2e-39
Identity = 80/220 (36.36%), Postives = 139/220 (63.18%), Query Frame = 0


Query: 13  LEPVVRDYPDVF----SEELPGLPPHREIEFAIELEPGTIPISRAPYRMAPAELKELKVQ 72
           L  + +++ D+     +E+LP   P + +EF +EL      +    Y + P +++ +  +
Sbjct: 374 LPDIYKEFKDITAETNTEKLP--KPIKGLEFEVELTQENYRLPIRNYPLPPGKMQAMNDE 433

Query: 73  LQELLDKGFIRPSVSPFGAVVLFVKKKDGSMRLCIDYRELNKVTVKNRYPLPKIDDLFDQ 132
           + + L  G IR S +     V+FV KK+G++R+ +DY+ LNK    N YPLP I+ L  +
Sbjct: 434 INQGLKSGIIRESKAINACPVMFVPKKEGTLRMVVDYKPLNKYVKPNIYPLPLIEQLLAK 493

Query: 133 LQGATVFSKIDLRSGYHQLRIKDGDVPKTAFRSRYGHYEFIVMSFGLTNAPAVFMDLMNK 192
           +QG+T+F+K+DL+S YH +R++ GD  K AFR   G +E++VM +G++ APA F   +N 
Sbjct: 494 IQGSTIFTKLDLKSAYHLIRVRKGDEHKLAFRCPRGVFEYLVMPYGISTAPAHFQYFINT 553

Query: 193 VFREFLDTFVIVFIDDILIYSKTEAEHEEHLRMVLQTLRD 229
           +  E  ++ V+ ++DDILI+SK+E+EH +H++ VLQ L++
Sbjct: 554 ILGEAKESHVVCYMDDILIHSKSESEHVKHVKDVLQKLKN 591

[Close]

BLAST of Pay0015208 vs. ExPASy Swiss-Prot
Match: P0CT34 (Transposon Tf2-1 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=Tf2-1 PE=3 SV=1)

HSP 1 Score: 162.2 bits (409), Expect = 7.2e-39
Identity = 80/220 (36.36%), Postives = 139/220 (63.18%), Query Frame = 0


Query: 13  LEPVVRDYPDVF----SEELPGLPPHREIEFAIELEPGTIPISRAPYRMAPAELKELKVQ 72
           L  + +++ D+     +E+LP   P + +EF +EL      +    Y + P +++ +  +
Sbjct: 374 LPDIYKEFKDITAETNTEKLP--KPIKGLEFEVELTQENYRLPIRNYPLPPGKMQAMNDE 433

Query: 73  LQELLDKGFIRPSVSPFGAVVLFVKKKDGSMRLCIDYRELNKVTVKNRYPLPKIDDLFDQ 132
           + + L  G IR S +     V+FV KK+G++R+ +DY+ LNK    N YPLP I+ L  +
Sbjct: 434 INQGLKSGIIRESKAINACPVMFVPKKEGTLRMVVDYKPLNKYVKPNIYPLPLIEQLLAK 493

Query: 133 LQGATVFSKIDLRSGYHQLRIKDGDVPKTAFRSRYGHYEFIVMSFGLTNAPAVFMDLMNK 192
           +QG+T+F+K+DL+S YH +R++ GD  K AFR   G +E++VM +G++ APA F   +N 
Sbjct: 494 IQGSTIFTKLDLKSAYHLIRVRKGDEHKLAFRCPRGVFEYLVMPYGISTAPAHFQYFINT 553

Query: 193 VFREFLDTFVIVFIDDILIYSKTEAEHEEHLRMVLQTLRD 229
           +  E  ++ V+ ++DDILI+SK+E+EH +H++ VLQ L++
Sbjct: 554 ILGEAKESHVVCYMDDILIHSKSESEHVKHVKDVLQKLKN 591

[Close]

BLAST of Pay0015208 vs. ExPASy Swiss-Prot
Match: P0CT35 (Transposon Tf2-2 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=Tf2-2 PE=3 SV=1)

HSP 1 Score: 162.2 bits (409), Expect = 7.2e-39
Identity = 80/220 (36.36%), Postives = 139/220 (63.18%), Query Frame = 0


Query: 13  LEPVVRDYPDVF----SEELPGLPPHREIEFAIELEPGTIPISRAPYRMAPAELKELKVQ 72
           L  + +++ D+     +E+LP   P + +EF +EL      +    Y + P +++ +  +
Sbjct: 374 LPDIYKEFKDITAETNTEKLP--KPIKGLEFEVELTQENYRLPIRNYPLPPGKMQAMNDE 433

Query: 73  LQELLDKGFIRPSVSPFGAVVLFVKKKDGSMRLCIDYRELNKVTVKNRYPLPKIDDLFDQ 132
           + + L  G IR S +     V+FV KK+G++R+ +DY+ LNK    N YPLP I+ L  +
Sbjct: 434 INQGLKSGIIRESKAINACPVMFVPKKEGTLRMVVDYKPLNKYVKPNIYPLPLIEQLLAK 493

Query: 133 LQGATVFSKIDLRSGYHQLRIKDGDVPKTAFRSRYGHYEFIVMSFGLTNAPAVFMDLMNK 192
           +QG+T+F+K+DL+S YH +R++ GD  K AFR   G +E++VM +G++ APA F   +N 
Sbjct: 494 IQGSTIFTKLDLKSAYHLIRVRKGDEHKLAFRCPRGVFEYLVMPYGISTAPAHFQYFINT 553

Query: 193 VFREFLDTFVIVFIDDILIYSKTEAEHEEHLRMVLQTLRD 229
           +  E  ++ V+ ++DDILI+SK+E+EH +H++ VLQ L++
Sbjct: 554 ILGEAKESHVVCYMDDILIHSKSESEHVKHVKDVLQKLKN 591

[Close]

BLAST of Pay0015208 vs. ExPASy TrEMBL
Match: A0A5A7TV57 (Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold498G00240 PE=4 SV=1)

HSP 1 Score: 445.7 bits (1145), Expect = 1.2e-121
Identity = 220/230 (95.65%), Postives = 227/230 (98.70%), Query Frame = 0


Query: 1    MVDTREVDVSLSLEPVVRDYPDVFSEELPGLPPHREIEFAIELEPGTIPISRAPYRMAPA 60
            +VDTREVDVSLS EPVVRDYPDVF EELPGLPPHRE+EFAIELEPGT+PISRAPYRMAPA
Sbjct: 1007 VVDTREVDVSLSSEPVVRDYPDVFPEELPGLPPHREVEFAIELEPGTVPISRAPYRMAPA 1066

Query: 61   ELKELKVQLQELLDKGFIRPSVSPFGAVVLFVKKKDGSMRLCIDYRELNKVTVKNRYPLP 120
            ELKELKVQLQELLDKGFIRPSVSP+GA VLFVKKKDGSMRLCIDYRELNKVTVKNRYPLP
Sbjct: 1067 ELKELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKDGSMRLCIDYRELNKVTVKNRYPLP 1126

Query: 121  KIDDLFDQLQGATVFSKIDLRSGYHQLRIKDGDVPKTAFRSRYGHYEFIVMSFGLTNAPA 180
            +IDDLFDQLQGATVFSKIDLRSGYHQLRIKDGDVPKTAFRSRYGHYEFIVMSFGLTNAPA
Sbjct: 1127 RIDDLFDQLQGATVFSKIDLRSGYHQLRIKDGDVPKTAFRSRYGHYEFIVMSFGLTNAPA 1186

Query: 181  VFMDLMNKVFREFLDTFVIVFIDDILIYSKTEAEHEEHLRMVLQTLRDNK 231
            VFMDLMN+VFREFLDTFVIVFIDDILIYSKTEAEHEEHLR+VLQTLRDNK
Sbjct: 1187 VFMDLMNRVFREFLDTFVIVFIDDILIYSKTEAEHEEHLRIVLQTLRDNK 1236

[Close]

BLAST of Pay0015208 vs. ExPASy TrEMBL
Match: A0A5A7SQP5 (Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold219G002220 PE=4 SV=1)

HSP 1 Score: 445.3 bits (1144), Expect = 1.6e-121
Identity = 219/230 (95.22%), Postives = 227/230 (98.70%), Query Frame = 0


Query: 1   MVDTREVDVSLSLEPVVRDYPDVFSEELPGLPPHREIEFAIELEPGTIPISRAPYRMAPA 60
           +VDTREVDVSLS EPVVRDYPDVF EELPGLPPHRE+EFAIELEPGT+PISRAPYRMAPA
Sbjct: 506 VVDTREVDVSLSSEPVVRDYPDVFPEELPGLPPHREVEFAIELEPGTVPISRAPYRMAPA 565

Query: 61  ELKELKVQLQELLDKGFIRPSVSPFGAVVLFVKKKDGSMRLCIDYRELNKVTVKNRYPLP 120
           ELKELKVQLQELLDKGFIRPSVSP+GA +LFVKKKDGSMRLCIDYRELNKVTVKNRYPLP
Sbjct: 566 ELKELKVQLQELLDKGFIRPSVSPWGAPILFVKKKDGSMRLCIDYRELNKVTVKNRYPLP 625

Query: 121 KIDDLFDQLQGATVFSKIDLRSGYHQLRIKDGDVPKTAFRSRYGHYEFIVMSFGLTNAPA 180
           +IDDLFDQLQGATVFSKIDLRSGYHQLRIKDGDVPKTAFRSRYGHYEFIVMSFGLTNAPA
Sbjct: 626 RIDDLFDQLQGATVFSKIDLRSGYHQLRIKDGDVPKTAFRSRYGHYEFIVMSFGLTNAPA 685

Query: 181 VFMDLMNKVFREFLDTFVIVFIDDILIYSKTEAEHEEHLRMVLQTLRDNK 231
           VFMDLMN+VFREFLDTFVIVFIDDILIYSKTEAEHEEHLR+VLQTLRDNK
Sbjct: 686 VFMDLMNRVFREFLDTFVIVFIDDILIYSKTEAEHEEHLRIVLQTLRDNK 735

[Close]

BLAST of Pay0015208 vs. ExPASy TrEMBL
Match: A0A5A7TW65 (DNA/RNA polymerases superfamily protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold83G00760 PE=4 SV=1)

HSP 1 Score: 445.3 bits (1144), Expect = 1.6e-121
Identity = 220/230 (95.65%), Postives = 226/230 (98.26%), Query Frame = 0


Query: 1   MVDTREVDVSLSLEPVVRDYPDVFSEELPGLPPHREIEFAIELEPGTIPISRAPYRMAPA 60
           +VDTREVDVSLS EPVVRDYPDVF EELPGLPPHRE+EFAIELEPGT+PISRAPYRMAPA
Sbjct: 663 VVDTREVDVSLSSEPVVRDYPDVFPEELPGLPPHREVEFAIELEPGTVPISRAPYRMAPA 722

Query: 61  ELKELKVQLQELLDKGFIRPSVSPFGAVVLFVKKKDGSMRLCIDYRELNKVTVKNRYPLP 120
           ELKELKVQLQELLDKGFIRPSVSP+GA VLFVKKKDGSMRLCIDYRELNKVTVKNRYPLP
Sbjct: 723 ELKELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKDGSMRLCIDYRELNKVTVKNRYPLP 782

Query: 121 KIDDLFDQLQGATVFSKIDLRSGYHQLRIKDGDVPKTAFRSRYGHYEFIVMSFGLTNAPA 180
           +IDDLFDQLQGATVFSKIDLRSGYHQLRIKDGDVPKTAFRSRYGHYEFIVMSFGLTNAPA
Sbjct: 783 RIDDLFDQLQGATVFSKIDLRSGYHQLRIKDGDVPKTAFRSRYGHYEFIVMSFGLTNAPA 842

Query: 181 VFMDLMNKVFREFLDTFVIVFIDDILIYSKTEAEHEEHLRMVLQTLRDNK 231
           VFMDLMN+VFREFLDTFVIVFIDDILIYSK EAEHEEHLRMVLQTLRDNK
Sbjct: 843 VFMDLMNRVFREFLDTFVIVFIDDILIYSKAEAEHEEHLRMVLQTLRDNK 892

[Close]

BLAST of Pay0015208 vs. ExPASy TrEMBL
Match: A0A5A7T190 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold379G001700 PE=4 SV=1)

HSP 1 Score: 444.9 bits (1143), Expect = 2.1e-121
Identity = 220/230 (95.65%), Postives = 226/230 (98.26%), Query Frame = 0


Query: 1   MVDTREVDVSLSLEPVVRDYPDVFSEELPGLPPHREIEFAIELEPGTIPISRAPYRMAPA 60
           +VDTREVDVSLSLEPVVRDYPDVF EELPGLPPHRE+EFAIELEPGT+PISRAPYRMAPA
Sbjct: 558 VVDTREVDVSLSLEPVVRDYPDVFPEELPGLPPHREVEFAIELEPGTVPISRAPYRMAPA 617

Query: 61  ELKELKVQLQELLDKGFIRPSVSPFGAVVLFVKKKDGSMRLCIDYRELNKVTVKNRYPLP 120
           ELKELKVQLQELLDKGFIRPSVSP+GA VLFVKKKDGSMRLCIDYRELNKVTVKNRYPLP
Sbjct: 618 ELKELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKDGSMRLCIDYRELNKVTVKNRYPLP 677

Query: 121 KIDDLFDQLQGATVFSKIDLRSGYHQLRIKDGDVPKTAFRSRYGHYEFIVMSFGLTNAPA 180
           +IDDLFDQLQGATVFSKIDLRSGYHQLRIKD DVPKTAFRSRYGHYEFIVMSFGLTNAPA
Sbjct: 678 RIDDLFDQLQGATVFSKIDLRSGYHQLRIKDEDVPKTAFRSRYGHYEFIVMSFGLTNAPA 737

Query: 181 VFMDLMNKVFREFLDTFVIVFIDDILIYSKTEAEHEEHLRMVLQTLRDNK 231
           VFMDLMN+VFREFLDTFVIVFIDDILIYSKTE EHEEHLRMVLQTLRDNK
Sbjct: 738 VFMDLMNRVFREFLDTFVIVFIDDILIYSKTEVEHEEHLRMVLQTLRDNK 787

[Close]

BLAST of Pay0015208 vs. ExPASy TrEMBL
Match: A0A5A7SQU8 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold134G00040 PE=4 SV=1)

HSP 1 Score: 444.5 bits (1142), Expect = 2.7e-121
Identity = 219/230 (95.22%), Postives = 227/230 (98.70%), Query Frame = 0


Query: 1    MVDTREVDVSLSLEPVVRDYPDVFSEELPGLPPHREIEFAIELEPGTIPISRAPYRMAPA 60
            +VDTREVDVSLS EPVVRDYPDVF EELPGLPPHRE+EFAIELEPGT+PISRAPYRMAPA
Sbjct: 896  VVDTREVDVSLSSEPVVRDYPDVFPEELPGLPPHREVEFAIELEPGTVPISRAPYRMAPA 955

Query: 61   ELKELKVQLQELLDKGFIRPSVSPFGAVVLFVKKKDGSMRLCIDYRELNKVTVKNRYPLP 120
            ELKELKVQLQELLDKGFIRPS+SP+GA VLFVKKKDGSMRLCIDYRELNKVTVKNRYPLP
Sbjct: 956  ELKELKVQLQELLDKGFIRPSMSPWGAPVLFVKKKDGSMRLCIDYRELNKVTVKNRYPLP 1015

Query: 121  KIDDLFDQLQGATVFSKIDLRSGYHQLRIKDGDVPKTAFRSRYGHYEFIVMSFGLTNAPA 180
            +IDDLFDQLQGATVFSKIDLRSGYHQLRIKDGDVPKTAFRSRYGHYEFIVMSFGLTNAPA
Sbjct: 1016 RIDDLFDQLQGATVFSKIDLRSGYHQLRIKDGDVPKTAFRSRYGHYEFIVMSFGLTNAPA 1075

Query: 181  VFMDLMNKVFREFLDTFVIVFIDDILIYSKTEAEHEEHLRMVLQTLRDNK 231
            VFMDLMN+VFREFLDTFVIVFIDDILIYSKTEAEHEEHLR+VLQTLRDNK
Sbjct: 1076 VFMDLMNRVFREFLDTFVIVFIDDILIYSKTEAEHEEHLRIVLQTLRDNK 1125

[Close]

BLAST of Pay0015208 vs. NCBI nr
Match: KAA0047433.1 (ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 445.7 bits (1145), Expect = 2.5e-121
Identity = 220/230 (95.65%), Postives = 227/230 (98.70%), Query Frame = 0


Query: 1    MVDTREVDVSLSLEPVVRDYPDVFSEELPGLPPHREIEFAIELEPGTIPISRAPYRMAPA 60
            +VDTREVDVSLS EPVVRDYPDVF EELPGLPPHRE+EFAIELEPGT+PISRAPYRMAPA
Sbjct: 1007 VVDTREVDVSLSSEPVVRDYPDVFPEELPGLPPHREVEFAIELEPGTVPISRAPYRMAPA 1066

Query: 61   ELKELKVQLQELLDKGFIRPSVSPFGAVVLFVKKKDGSMRLCIDYRELNKVTVKNRYPLP 120
            ELKELKVQLQELLDKGFIRPSVSP+GA VLFVKKKDGSMRLCIDYRELNKVTVKNRYPLP
Sbjct: 1067 ELKELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKDGSMRLCIDYRELNKVTVKNRYPLP 1126

Query: 121  KIDDLFDQLQGATVFSKIDLRSGYHQLRIKDGDVPKTAFRSRYGHYEFIVMSFGLTNAPA 180
            +IDDLFDQLQGATVFSKIDLRSGYHQLRIKDGDVPKTAFRSRYGHYEFIVMSFGLTNAPA
Sbjct: 1127 RIDDLFDQLQGATVFSKIDLRSGYHQLRIKDGDVPKTAFRSRYGHYEFIVMSFGLTNAPA 1186

Query: 181  VFMDLMNKVFREFLDTFVIVFIDDILIYSKTEAEHEEHLRMVLQTLRDNK 231
            VFMDLMN+VFREFLDTFVIVFIDDILIYSKTEAEHEEHLR+VLQTLRDNK
Sbjct: 1187 VFMDLMNRVFREFLDTFVIVFIDDILIYSKTEAEHEEHLRIVLQTLRDNK 1236

[Close]

BLAST of Pay0015208 vs. NCBI nr
Match: KAA0047194.1 (DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa])

HSP 1 Score: 445.3 bits (1144), Expect = 3.2e-121
Identity = 220/230 (95.65%), Postives = 226/230 (98.26%), Query Frame = 0


Query: 1   MVDTREVDVSLSLEPVVRDYPDVFSEELPGLPPHREIEFAIELEPGTIPISRAPYRMAPA 60
           +VDTREVDVSLS EPVVRDYPDVF EELPGLPPHRE+EFAIELEPGT+PISRAPYRMAPA
Sbjct: 663 VVDTREVDVSLSSEPVVRDYPDVFPEELPGLPPHREVEFAIELEPGTVPISRAPYRMAPA 722

Query: 61  ELKELKVQLQELLDKGFIRPSVSPFGAVVLFVKKKDGSMRLCIDYRELNKVTVKNRYPLP 120
           ELKELKVQLQELLDKGFIRPSVSP+GA VLFVKKKDGSMRLCIDYRELNKVTVKNRYPLP
Sbjct: 723 ELKELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKDGSMRLCIDYRELNKVTVKNRYPLP 782

Query: 121 KIDDLFDQLQGATVFSKIDLRSGYHQLRIKDGDVPKTAFRSRYGHYEFIVMSFGLTNAPA 180
           +IDDLFDQLQGATVFSKIDLRSGYHQLRIKDGDVPKTAFRSRYGHYEFIVMSFGLTNAPA
Sbjct: 783 RIDDLFDQLQGATVFSKIDLRSGYHQLRIKDGDVPKTAFRSRYGHYEFIVMSFGLTNAPA 842

Query: 181 VFMDLMNKVFREFLDTFVIVFIDDILIYSKTEAEHEEHLRMVLQTLRDNK 231
           VFMDLMN+VFREFLDTFVIVFIDDILIYSK EAEHEEHLRMVLQTLRDNK
Sbjct: 843 VFMDLMNRVFREFLDTFVIVFIDDILIYSKAEAEHEEHLRMVLQTLRDNK 892

[Close]

BLAST of Pay0015208 vs. NCBI nr
Match: KAA0032356.1 (ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 445.3 bits (1144), Expect = 3.2e-121
Identity = 219/230 (95.22%), Postives = 227/230 (98.70%), Query Frame = 0


Query: 1   MVDTREVDVSLSLEPVVRDYPDVFSEELPGLPPHREIEFAIELEPGTIPISRAPYRMAPA 60
           +VDTREVDVSLS EPVVRDYPDVF EELPGLPPHRE+EFAIELEPGT+PISRAPYRMAPA
Sbjct: 506 VVDTREVDVSLSSEPVVRDYPDVFPEELPGLPPHREVEFAIELEPGTVPISRAPYRMAPA 565

Query: 61  ELKELKVQLQELLDKGFIRPSVSPFGAVVLFVKKKDGSMRLCIDYRELNKVTVKNRYPLP 120
           ELKELKVQLQELLDKGFIRPSVSP+GA +LFVKKKDGSMRLCIDYRELNKVTVKNRYPLP
Sbjct: 566 ELKELKVQLQELLDKGFIRPSVSPWGAPILFVKKKDGSMRLCIDYRELNKVTVKNRYPLP 625

Query: 121 KIDDLFDQLQGATVFSKIDLRSGYHQLRIKDGDVPKTAFRSRYGHYEFIVMSFGLTNAPA 180
           +IDDLFDQLQGATVFSKIDLRSGYHQLRIKDGDVPKTAFRSRYGHYEFIVMSFGLTNAPA
Sbjct: 626 RIDDLFDQLQGATVFSKIDLRSGYHQLRIKDGDVPKTAFRSRYGHYEFIVMSFGLTNAPA 685

Query: 181 VFMDLMNKVFREFLDTFVIVFIDDILIYSKTEAEHEEHLRMVLQTLRDNK 231
           VFMDLMN+VFREFLDTFVIVFIDDILIYSKTEAEHEEHLR+VLQTLRDNK
Sbjct: 686 VFMDLMNRVFREFLDTFVIVFIDDILIYSKTEAEHEEHLRIVLQTLRDNK 735

[Close]

BLAST of Pay0015208 vs. NCBI nr
Match: KAA0037244.1 (reverse transcriptase [Cucumis melo var. makuwa])

HSP 1 Score: 444.9 bits (1143), Expect = 4.2e-121
Identity = 220/230 (95.65%), Postives = 226/230 (98.26%), Query Frame = 0


Query: 1   MVDTREVDVSLSLEPVVRDYPDVFSEELPGLPPHREIEFAIELEPGTIPISRAPYRMAPA 60
           +VDTREVDVSLSLEPVVRDYPDVF EELPGLPPHRE+EFAIELEPGT+PISRAPYRMAPA
Sbjct: 558 VVDTREVDVSLSLEPVVRDYPDVFPEELPGLPPHREVEFAIELEPGTVPISRAPYRMAPA 617

Query: 61  ELKELKVQLQELLDKGFIRPSVSPFGAVVLFVKKKDGSMRLCIDYRELNKVTVKNRYPLP 120
           ELKELKVQLQELLDKGFIRPSVSP+GA VLFVKKKDGSMRLCIDYRELNKVTVKNRYPLP
Sbjct: 618 ELKELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKDGSMRLCIDYRELNKVTVKNRYPLP 677

Query: 121 KIDDLFDQLQGATVFSKIDLRSGYHQLRIKDGDVPKTAFRSRYGHYEFIVMSFGLTNAPA 180
           +IDDLFDQLQGATVFSKIDLRSGYHQLRIKD DVPKTAFRSRYGHYEFIVMSFGLTNAPA
Sbjct: 678 RIDDLFDQLQGATVFSKIDLRSGYHQLRIKDEDVPKTAFRSRYGHYEFIVMSFGLTNAPA 737

Query: 181 VFMDLMNKVFREFLDTFVIVFIDDILIYSKTEAEHEEHLRMVLQTLRDNK 231
           VFMDLMN+VFREFLDTFVIVFIDDILIYSKTE EHEEHLRMVLQTLRDNK
Sbjct: 738 VFMDLMNRVFREFLDTFVIVFIDDILIYSKTEVEHEEHLRMVLQTLRDNK 787

[Close]

BLAST of Pay0015208 vs. NCBI nr
Match: KAA0031931.1 (pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 444.5 bits (1142), Expect = 5.5e-121
Identity = 219/230 (95.22%), Postives = 227/230 (98.70%), Query Frame = 0


Query: 1    MVDTREVDVSLSLEPVVRDYPDVFSEELPGLPPHREIEFAIELEPGTIPISRAPYRMAPA 60
            +VDTREVDVSLS EPVVRDYPDVF EELPGLPPHRE+EFAIELEPGT+PISRAPYRMAPA
Sbjct: 896  VVDTREVDVSLSSEPVVRDYPDVFPEELPGLPPHREVEFAIELEPGTVPISRAPYRMAPA 955

Query: 61   ELKELKVQLQELLDKGFIRPSVSPFGAVVLFVKKKDGSMRLCIDYRELNKVTVKNRYPLP 120
            ELKELKVQLQELLDKGFIRPS+SP+GA VLFVKKKDGSMRLCIDYRELNKVTVKNRYPLP
Sbjct: 956  ELKELKVQLQELLDKGFIRPSMSPWGAPVLFVKKKDGSMRLCIDYRELNKVTVKNRYPLP 1015

Query: 121  KIDDLFDQLQGATVFSKIDLRSGYHQLRIKDGDVPKTAFRSRYGHYEFIVMSFGLTNAPA 180
            +IDDLFDQLQGATVFSKIDLRSGYHQLRIKDGDVPKTAFRSRYGHYEFIVMSFGLTNAPA
Sbjct: 1016 RIDDLFDQLQGATVFSKIDLRSGYHQLRIKDGDVPKTAFRSRYGHYEFIVMSFGLTNAPA 1075

Query: 181  VFMDLMNKVFREFLDTFVIVFIDDILIYSKTEAEHEEHLRMVLQTLRDNK 231
            VFMDLMN+VFREFLDTFVIVFIDDILIYSKTEAEHEEHLR+VLQTLRDNK
Sbjct: 1076 VFMDLMNRVFREFLDTFVIVFIDDILIYSKTEAEHEEHLRIVLQTLRDNK 1125

The following BLAST results are available for this feature:

BLAST of Pay0015208 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q99315	1.0e-40	41.51	Transposon Ty3-G Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 20...	[more]
Q7LHG5	1.0e-40	41.51	Transposon Ty3-I Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 20...	[more]
P0CT41	7.2e-39	36.36	Transposon Tf2-12 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24...	[more]
P0CT34	7.2e-39	36.36	Transposon Tf2-1 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 248...	[more]
P0CT35	7.2e-39	36.36	Transposon Tf2-2 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 248...	[more]

BLAST of Pay0015208 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7TV57	1.2e-121	95.65	Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C2...	[more]
A0A5A7SQP5	1.6e-121	95.22	Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C2...	[more]
A0A5A7TW65	1.6e-121	95.65	DNA/RNA polymerases superfamily protein OS=Cucumis melo var. makuwa OX=1194695 G...	[more]
A0A5A7T190	2.1e-121	95.65	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold37...	[more]
A0A5A7SQU8	2.7e-121	95.22	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold13...	[more]

BLAST of Pay0015208 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0047433.1	2.5e-121	95.65	ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]	[more]
KAA0047194.1	3.2e-121	95.65	DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]	[more]
KAA0032356.1	3.2e-121	95.22	ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]	[more]
KAA0037244.1	4.2e-121	95.65	reverse transcriptase [Cucumis melo var. makuwa]	[more]
KAA0031931.1	5.5e-121	95.22	pol protein [Cucumis melo var. makuwa]	[more]

BLAST of Pay0015208 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (Payzawat) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000477	Reverse transcriptase domain	PFAM	PF00078	RVT_1	coord: 92..229 e-value: 3.5E-24 score: 85.6
IPR000477	Reverse transcriptase domain	PROSITE	PS50878	RT_POL	coord: 73..230 score: 9.593082
None	No IPR available	GENE3D	3.10.10.10	HIV Type 1 Reverse Transcriptase, subunit A, domain 1	coord: 37..177 e-value: 4.9E-81 score: 273.1
None	No IPR available	PANTHER	PTHR24559:SF319	SUBFAMILY NOT NAMED	coord: 14..203
None	No IPR available	PANTHER	PTHR24559	TRANSPOSON TY3-I GAG-POL POLYPROTEIN	coord: 14..203
None	No IPR available	CDD	cd01647	RT_LTR	coord: 76..230 e-value: 1.91942E-82 score: 241.731
IPR043128	Reverse transcriptase/Diguanylate cyclase domain	GENE3D	3.30.70.270		coord: 117..230 e-value: 4.9E-81 score: 273.1
IPR043502	DNA/RNA polymerase superfamily	SUPERFAMILY	56672	DNA/RNA polymerases	coord: 16..229

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Pay0015208.1	Pay0015208.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015074	DNA integration
biological_process	GO:0090305	nucleic acid phosphodiester bond hydrolysis
biological_process	GO:0006508	proteolysis
biological_process	GO:0006355	regulation of transcription, DNA-templated
biological_process	GO:0006278	RNA-dependent DNA biosynthetic process
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0004190	aspartic-type endopeptidase activity
molecular_function	GO:0003700	DNA-binding transcription factor activity
molecular_function	GO:0004519	endonuclease activity
molecular_function	GO:0003964	RNA-directed DNA polymerase activity
molecular_function	GO:0043565	sequence-specific DNA binding
molecular_function	GO:0008270	zinc ion binding