Pay0015176 (gene) Melon (Payzawat) v1

Overview
NamePay0015176
Typegene
OrganismCucumis melo L. var. inodorus cv. Payzawat (Melon (Payzawat) v1)
DescriptionReverse transcriptase Ty1/copia-type domain-containing protein
Locationchr10: 8248266 .. 8249660 (+)
RNA-Seq ExpressionPay0015176
SyntenyPay0015176
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexonpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAGGAAGAATATAGTGCTTTACTCAAAGAAAATACATGGAGCTTGGTACCACCATCTCCCTCTCAAAATGTAGTTGGGAGTAAATGGGTATTTCGACTTAAGCGTCATATCGATGGTTCAATCCTGAGATACAAAGCCAGAATGGTCGCCAAAGGGTTTCATCAACACCCCGGTGTGGATTTCTTTGAGATGTTCAACCCTGTTATTAAAGCTTCCACCATTCGAGTTGTTCTTAGTATTGCTGTTACAAATGGATGGCTGCTTAGACAACTTGATTTTAACAATGCCTTTTTAAATGGCCACCTTGAGGAAAATGTTTATATGATGCAGCCTCCCGGGTATGTCCATCTCTCTTATCCAAATTATGCATGTAAGTTAAACAAAGCAATATATGGGTTGAAACAAGCCCCCCGCGAATGGAATGCTACCTTATCTAAAGAACATTTAAAGTGGGGCTTCATAAACTCTCGGTCAAATTTCTCTTTGTTCATATTTCGAAGAAATAATTATGTTGTTCTATTGTTGGTGTATGTTGATGATATTATAGTGACTGGTAATGACTCTGTGTTGATTAGCACTTTGATTAAGTCATTGGATAAACAATTTGCTCTAAAAGATCTGGGACGGTTGACTTATTTCTTGGGCTTTCAAGTAAACTATCTTGAATCTGGTTTTATTCTCAACCAAGGGAAGTACATCAGTGACCTTCTTCATAAACTTCAGCTCAGTGATTTAAAGCCAGCCCCATCTCCAAGTGTTGTTGGAAAAAATCTATTCGCTTTTGGTGGTACTCCACTTGAAGACCCTTTTGTTTATCGCAACACTATTGGAGCCTTACAATACCTCACGAACACGAGACCGGACATTGCCTATATTATTAACCAATTAAGTCAGTTTCTTCAAAAGCCTACGGATCTTCACTGGCAAGCCGTTAAATGTGTTCTCAAGTATCTAAGTGGTACAAAATCCTTTGGTTTGATGTTTCAACAAGGTGATGATCTGGCCATTTCTGCATACTCCGATGCTGACTGGGCATCGAACATTAATGACCGTAAGTCCATTGTAGCCTATTGTATATTCATTGGTAACACCCTAGTGTTTTGGTCATCTAAGAAACAAACTGTCGTCGCTCGATCAAGCACGAAATCTGAATATCGGGCCCTTGCCCTTGTTGCATCTGAAGTTATTTGGTTGAAGCAACTACTCTTGGAATTGACTAGCTATCCATCACGCAAACCGGTTATTTGGTGTGACAACATCAGTTCTGGAGCCTTAGCAATGAATCCTGTATTTCATGCTCGCACGAAGCATATTGAAATCGATGTTCACTTTGTTCGAGATCAAGTTCTTAAGGGTGCTTTGGAAGTTCGTTATGTGTCTTCAGTTGATTAA

mRNA sequence

ATGGAGGAAGAATATAGTGCTTTACTCAAAGAAAATACATGGAGCTTGATGTTCAACCCTGTTATTAAAGCTTCCACCATTCGAGTTGTTCTTAGTATTGCTGTTACAAATGGATGGCTGCTTAGACAACTTGATTTTAACAATGCCTTTTTAAATGGCCACCTTGAGGAAAATGTTTATATGATGCAGCCTCCCGGGTATGTCCATCTCTCTTATCCAAATTATGCATTAAACTATCTTGAATCTGGTTTTATTCTCAACCAAGGGAAGTACATCAGTGACCTTCTTCATAAACTTCAGCTCAGTGATTTAAAGCCAGCCCCATCTCCAAGTGTTGTTGGAAAAAATCTATTCGCTTTTGGTGGTACTCCACTTGAAGACCCTTTTGTTTATCGCAACACTATTGGAGCCTTACAATACCTCACGAACACGAGACCGGACATTGCCTATATTATTAACCAATTAAGTCAGTTTCTTCAAAAGCCTACGGATCTTCACTGGCAAGCCGTTAAATGTAAACAAACTGTCGTCGCTCGATCAAGCACGAAATCTGAATATCGGGCCCTTGCCCTTGTTGCATCTGAAGTTATTTGGTTGAAGCAACTACTCTTGGAATTGACTAGCTATCCATCACGCAAACCGGTTATTTGGTGTGACAACATCAGTTCTGGAGCCTTAGCAATGAATCCTGTATTTCATGCTCGCACGAAGCATATTGAAATCGATGTTCACTTTGTTCGAGATCAAGTTCTTAAGGGTGCTTTGGAAGTTCGTTATGTGTCTTCAGTTGATTAA

Coding sequence (CDS)

ATGGAGGAAGAATATAGTGCTTTACTCAAAGAAAATACATGGAGCTTGATGTTCAACCCTGTTATTAAAGCTTCCACCATTCGAGTTGTTCTTAGTATTGCTGTTACAAATGGATGGCTGCTTAGACAACTTGATTTTAACAATGCCTTTTTAAATGGCCACCTTGAGGAAAATGTTTATATGATGCAGCCTCCCGGGTATGTCCATCTCTCTTATCCAAATTATGCATTAAACTATCTTGAATCTGGTTTTATTCTCAACCAAGGGAAGTACATCAGTGACCTTCTTCATAAACTTCAGCTCAGTGATTTAAAGCCAGCCCCATCTCCAAGTGTTGTTGGAAAAAATCTATTCGCTTTTGGTGGTACTCCACTTGAAGACCCTTTTGTTTATCGCAACACTATTGGAGCCTTACAATACCTCACGAACACGAGACCGGACATTGCCTATATTATTAACCAATTAAGTCAGTTTCTTCAAAAGCCTACGGATCTTCACTGGCAAGCCGTTAAATGTAAACAAACTGTCGTCGCTCGATCAAGCACGAAATCTGAATATCGGGCCCTTGCCCTTGTTGCATCTGAAGTTATTTGGTTGAAGCAACTACTCTTGGAATTGACTAGCTATCCATCACGCAAACCGGTTATTTGGTGTGACAACATCAGTTCTGGAGCCTTAGCAATGAATCCTGTATTTCATGCTCGCACGAAGCATATTGAAATCGATGTTCACTTTGTTCGAGATCAAGTTCTTAAGGGTGCTTTGGAAGTTCGTTATGTGTCTTCAGTTGATTAA

Protein sequence

MEEEYSALLKENTWSLMFNPVIKASTIRVVLSIAVTNGWLLRQLDFNNAFLNGHLEENVYMMQPPGYVHLSYPNYALNYLESGFILNQGKYISDLLHKLQLSDLKPAPSPSVVGKNLFAFGGTPLEDPFVYRNTIGALQYLTNTRPDIAYIINQLSQFLQKPTDLHWQAVKCKQTVVARSSTKSEYRALALVASEVIWLKQLLLELTSYPSRKPVIWCDNISSGALAMNPVFHARTKHIEIDVHFVRDQVLKGALEVRYVSSVD
Homology
BLAST of Pay0015176 vs. ExPASy Swiss-Prot
Match: Q94HW2 (Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana OX=3702 GN=RE1 PE=2 SV=1)

HSP 1 Score: 184.1 bits (466), Expect = 2.0e-45
Identity = 126/399 (31.58%), Postives = 168/399 (42.11%), Query Frame = 0

Query: 18   FNPVIKASTIRVVLSIAVTNGWLLRQLDFNNAFLNGHLEENVYMMQPPGYVHLSYPNYAL 77
            F+PVIK+++IR+VL +AV   W +RQLD NNAFL G L ++VYM QPPG++    PNY  
Sbjct: 1038 FSPVIKSTSIRIVLGVAVDRSWPIRQLDVNNAFLQGTLTDDVYMSQPPGFIDKDRPNYVC 1097

Query: 78   ---------------------NYL------------------------------------ 137
                                 NYL                                    
Sbjct: 1098 KLRKALYGLKQAPRAWYVELRNYLLTIGFVNSVSDTSLFVLQRGKSIVYMLVYVDDILIT 1157

Query: 138  -------------------------------------ESGFILNQGKYISDLLHKLQLSD 197
                                                  +G  L+Q +YI DLL +  +  
Sbjct: 1158 GNDPTLLHNTLDNLSQRFSVKDHEELHYFLGIEAKRVPTGLHLSQRRYILDLLARTNMIT 1217

Query: 198  LKPAPSPSVVGKNLFAFGGTPLEDPFVYRNTIGALQYLTNTRPDIAYIINQLSQFLQKPT 257
             KP  +P      L  + GT L DP  YR  +G+LQYL  TRPDI+Y +N+LSQF+  PT
Sbjct: 1218 AKPVTTPMAPSPKLSLYSGTKLTDPTEYRGIVGSLQYLAFTRPDISYAVNRLSQFMHMPT 1277

Query: 258  DLHWQAVK---------------------------------------------------- 265
            + H QA+K                                                    
Sbjct: 1278 EEHLQALKRILRYLAGTPNHGIFLKKGNTLSLHAYSDADWAGDKDDYVSTNGYIVYLGHH 1337

BLAST of Pay0015176 vs. ExPASy Swiss-Prot
Match: Q9ZT94 (Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana OX=3702 GN=RE2 PE=4 SV=1)

HSP 1 Score: 179.1 bits (453), Expect = 6.5e-44
Identity = 122/399 (30.58%), Postives = 164/399 (41.10%), Query Frame = 0

Query: 18   FNPVIKASTIRVVLSIAVTNGWLLRQLDFNNAFLNGHLEENVYMMQPPGYVHLSYPNYA- 77
            F+PVIK+++IR+VL +AV   W +RQLD NNAFL G L + VYM QPPG+V    P+Y  
Sbjct: 1021 FSPVIKSTSIRIVLGVAVDRSWPIRQLDVNNAFLQGTLTDEVYMSQPPGFVDKDRPDYVC 1080

Query: 78   ------------------------------------------------------------ 137
                                                                        
Sbjct: 1081 RLRKAIYGLKQAPRAWYVELRTYLLTVGFVNSISDTSLFVLQRGRSIIYMLVYVDDILIT 1140

Query: 138  -------------------------LNY--------LESGFILNQGKYISDLLHKLQLSD 197
                                     L+Y        +  G  L+Q +Y  DLL +  +  
Sbjct: 1141 GNDTVLLKHTLDALSQRFSVKEHEDLHYFLGIEAKRVPQGLHLSQRRYTLDLLARTNMLT 1200

Query: 198  LKPAPSPSVVGKNLFAFGGTPLEDPFVYRNTIGALQYLTNTRPDIAYIINQLSQFLQKPT 257
             KP  +P      L    GT L DP  YR  +G+LQYL  TRPD++Y +N+LSQ++  PT
Sbjct: 1201 AKPVATPMATSPKLTLHSGTKLPDPTEYRGIVGSLQYLAFTRPDLSYAVNRLSQYMHMPT 1260

Query: 258  DLHWQAVK---------------------------------------------------- 265
            D HW A+K                                                    
Sbjct: 1261 DDHWNALKRVLRYLAGTPDHGIFLKKGNTLSLHAYSDADWAGDTDDYVSTNGYIVYLGHH 1320

BLAST of Pay0015176 vs. ExPASy Swiss-Prot
Match: P10978 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum OX=4097 PE=2 SV=1)

HSP 1 Score: 95.1 bits (235), Expect = 1.2e-18
Identity = 97/407 (23.83%), Postives = 156/407 (38.33%), Query Frame = 0

Query: 17   MFNPVIKASTIRVVLSIAVTNGWLLRQLDFNNAFLNGHLEENVYMMQPPGY-----VHL- 76
            +F+PV+K ++IR +LS+A +    + QLD   AFL+G LEE +YM QP G+      H+ 
Sbjct: 894  IFSPVVKMTSIRTILSLAASLDLEVEQLDVKTAFLHGDLEEEIYMEQPEGFEVAGKKHMV 953

Query: 77   --------------------------------SYPN---YALNYLESGFI---------- 136
                                            +Y +   Y   + E+ FI          
Sbjct: 954  CKLNKSLYGLKQAPRQWYMKFDSFMKSQTYLKTYSDPCVYFKRFSENNFIILLLYVDDML 1013

Query: 137  ----------------------------------------------LNQGKYISDLLHKL 196
                                                          L+Q KYI  +L + 
Sbjct: 1014 IVGKDKGLIAKLKGDLSKSFDMKDLGPAQQILGMKIVRERTSRKLWLSQEKYIERVLERF 1073

Query: 197  QLSDLKPAPSPSVVGKNLF-AFGGTPLED-----PFVYRNTIGALQY-LTNTRPDIAYII 256
             + + KP  +P      L      T +E+        Y + +G+L Y +  TRPDIA+ +
Sbjct: 1074 NMKNAKPVSTPLAGHLKLSKKMCPTTVEEKGNMAKVPYSSAVGSLMYAMVCTRPDIAHAV 1133

Query: 257  NQLSQFLQKPTDLHWQAVK--------------C-------------------------- 263
              +S+FL+ P   HW+AVK              C                          
Sbjct: 1134 GVVSRFLENPGKEHWEAVKWILRYLRGTTGDCLCFGGSDPILKGYTDADMAGDIDNRKSS 1193

BLAST of Pay0015176 vs. ExPASy Swiss-Prot
Match: P04146 (Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3)

HSP 1 Score: 65.9 bits (159), Expect = 8.1e-10
Identity = 63/247 (25.51%), Postives = 89/247 (36.03%), Query Frame = 0

Query: 81   ESGFILNQGKYISDLLHKLQLSDLK--PAPSPSVVGKNLFAFG---GTPLEDPFVYRNTI 140
            E    L+Q  Y+  +L K  + +      P PS +   L        TP       R+ I
Sbjct: 1132 EDKIYLSQSAYVKKILSKFNMENCNAVSTPLPSKINYELLNSDEDCNTPC------RSLI 1191

Query: 141  GALQY-LTNTRPDIAYIINQLSQFLQKPTDLHWQAVK----------------------- 200
            G L Y +  TRPD+   +N LS++  K     WQ +K                       
Sbjct: 1192 GCLMYIMLCTRPDLTTAVNILSRYSSKNNSELWQNLKRVLRYLKGTIDMKLIFKKNLAFE 1251

Query: 201  ----------------------------------C----KQTVVARSSTKSEYRALALVA 260
                                              C    +Q  VA SST++EY AL    
Sbjct: 1252 NKIIGYVDSDWAGSEIDRKSTTGYLFKMFDFNLICWNTKRQNSVAASSTEAEYMALFEAV 1311


HSP 2 Score: 44.7 bits (104), Expect = 1.9e-03
Identity = 20/49 (40.82%), Postives = 29/49 (59.18%), Query Frame = 0

Query: 18   FNPVIKASTIRVVLSIAVTNGWLLRQLDFNNAFLNGHLEENVYMMQPPG 67
            F PV + S+ R +LS+ +     + Q+D   AFLNG L+E +YM  P G
Sbjct: 975  FAPVARISSFRFILSLVIQYNLKVHQMDVKTAFLNGTLKEEIYMRLPQG 1023

BLAST of Pay0015176 vs. ExPASy Swiss-Prot
Match: P92519 (Uncharacterized mitochondrial protein AtMg00810 OS=Arabidopsis thaliana OX=3702 GN=AtMg00810 PE=4 SV=1)

HSP 1 Score: 65.9 bits (159), Expect = 8.1e-10
Identity = 55/199 (27.64%), Postives = 82/199 (41.21%), Query Frame = 0

Query: 58  NVYMMQPPGYVHLSYPNYALNYLESGFILNQGKYISDLLHKLQLSDLKPAPSPSVVGKNL 117
           + + M+  G VH  +    +    SG  L+Q KY   +L+   + D KP  +P  +  N 
Sbjct: 29  STFSMKDLGPVHY-FLGIQIKTHPSGLFLSQTKYAEQILNNAGMLDCKPMSTPLPLKLN- 88

Query: 118 FAFGGTPLEDPFVYRNTIGALQYLTNTRPDIAYIINQLSQFLQKPT-------------- 177
            +       DP  +R+ +GALQYLT TRPDI+Y +N + Q + +PT              
Sbjct: 89  SSVSTAKYPDPSDFRSIVGALQYLTLTRPDISYAVNIVCQRMHEPTLADFDLLKRVLRYV 148

Query: 178 ----------------------DLHWQA--------------VKC--------KQTVVAR 199
                                 D  W                + C        +Q  V+R
Sbjct: 149 KGTIFHGLYIHKNSKLNVQAFCDSDWAGCTSTRRSTTGFCTFLGCNIISWSAKRQPTVSR 208

BLAST of Pay0015176 vs. ExPASy TrEMBL
Match: A0A5D3DKK9 (Putative mitochondrial protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold610G00510 PE=4 SV=1)

HSP 1 Score: 448.4 bits (1152), Expect = 2.1e-122
Identity = 245/340 (72.06%), Postives = 245/340 (72.06%), Query Frame = 0

Query: 18  FNPVIKASTIRVVLSIAVTNGWLLRQLDFNNAFLNGHLEENVYMMQPPGYVHLSYPNYAL 77
           FNPVIKASTIRVVLSIAVTNGWLLRQLDFNNAFLNGHLEENVYMMQPPGYVHLSYPNYAL
Sbjct: 18  FNPVIKASTIRVVLSIAVTNGWLLRQLDFNNAFLNGHLEENVYMMQPPGYVHLSYPNYAL 77

Query: 78  -----------------------------------NYLESGFILNQGKYISDLLHKLQLS 137
                                              NYLESGFILNQGKYISDLLHKLQLS
Sbjct: 78  TGNDSVLISTLIKSLDKQFALKDLGRLTYFLGFQVNYLESGFILNQGKYISDLLHKLQLS 137

Query: 138 DLKPAPSPSVVGKNLFAFGGTPLEDPFVYRNTIGALQYLTNTRPDIAYIINQLSQFLQKP 197
           DLKPAPS SVVGKNLFAFGGTPLEDPFVYRNTIGALQYLTNTRPDIAYIINQLSQFLQKP
Sbjct: 138 DLKPAPSSSVVGKNLFAFGGTPLEDPFVYRNTIGALQYLTNTRPDIAYIINQLSQFLQKP 197

Query: 198 TDLHWQAVKC-------------------------------------------------- 257
           TDLHWQAVKC                                                  
Sbjct: 198 TDLHWQAVKCVLKYLSGTKSFGLMFQQGDDLAISAYSDADWASNINDRKSIAAYCIFIGN 257

Query: 258 --------KQTVVARSSTKSEYRALALVASEVIWLKQLLLELTSYPSRKPVIWCDNISSG 265
                   KQTVVARSSTKSEYRALALVASEVIWLKQLLLELTSYPSRK VIWCDNISSG
Sbjct: 258 TLVFWSSKKQTVVARSSTKSEYRALALVASEVIWLKQLLLELTSYPSRKLVIWCDNISSG 317

BLAST of Pay0015176 vs. ExPASy TrEMBL
Match: A0A5D3B8X5 (Putative mitochondrial protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1970G00130 PE=4 SV=1)

HSP 1 Score: 310.8 bits (795), Expect = 5.3e-81
Identity = 184/343 (53.64%), Postives = 202/343 (58.89%), Query Frame = 0

Query: 18  FNPVIKASTIRVVLSIAVTNGWLLRQLDFNNAFLNGHLEENVYMMQPPGYVHLSYPNYA- 77
           F+PVIKASTIRVVLSIAVTNGW LRQLDFNNAFLNGHLEENVYMMQPPGYVH SYP Y  
Sbjct: 104 FSPVIKASTIRVVLSIAVTNGWPLRQLDFNNAFLNGHLEENVYMMQPPGYVHPSYPKYVC 163

Query: 78  ------------------------------------------------------------ 137
                                                                       
Sbjct: 164 KLNKAIYGLKQAPCAWNATLSKELLKWSFINSRSDSSLFIFRRNNSVVLLLVYVDDIIVT 223

Query: 138 ---------------------------------LNYLESGFILNQGKYISDLLHKLQLSD 197
                                            +NYL+SGFILNQ KYISDLLHKLQLSD
Sbjct: 224 SNDSVLISTLIKSLDKQFALKDLGRLTYFLGFQVNYLKSGFILNQEKYISDLLHKLQLSD 283

Query: 198 LKPAPSPSVVGKNLFAFGGTPLEDPFVYRNTIGALQYLTNTRPDIAYIINQLSQ--FLQK 257
           LKPAPSPSVVGKNL AFGGTPLEDPFVYR+TIGALQ LTNTRPDIAYI+NQLS    +  
Sbjct: 284 LKPAPSPSVVGKNLSAFGGTPLEDPFVYRSTIGALQNLTNTRPDIAYIVNQLSDDLVISA 343

Query: 258 PTDLHWQAVKCKQTVVARSSTKSEYRALALVASEVIWLKQLLLELTSYPSRKPVIWCDNI 265
             D+ W +      +  R S          +A+  +++   L  ++  PSRKPVIWCDNI
Sbjct: 344 YFDVDWAS-----NIDDRKS----------IAAYCVFIGNNL--VSCCPSRKPVIWCDNI 403

BLAST of Pay0015176 vs. ExPASy TrEMBL
Match: A0A5D3BWM8 (Putative mitochondrial protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold121G001330 PE=4 SV=1)

HSP 1 Score: 266.9 bits (681), Expect = 8.8e-68
Identity = 141/202 (69.80%), Postives = 150/202 (74.26%), Query Frame = 0

Query: 18  FNPVIKASTIRVVLSIAVTNGWLLRQLDFNNAFLNGHLEENVYMMQPPGYVHLSYPNYAL 77
           F+ +IKASTIRVVLSIAVTNGW  RQL+FNNAFLNGHLE+ VYM QPPGYVH SYPNY L
Sbjct: 18  FSLIIKASTIRVVLSIAVTNGWPFRQLNFNNAFLNGHLEKKVYMKQPPGYVHPSYPNYVL 77

Query: 78  -----------------------------------NYLESGFILNQGKYISDLLHKLQLS 137
                                              NYLESGFILNQ KYISDLLHKLQL+
Sbjct: 78  TGNDSVLISTLIKSLDKQFALKDLGRLTYFLGFQVNYLESGFILNQEKYISDLLHKLQLN 137

Query: 138 DLKPAPSPSVVGKNLFAFGGTPLEDPFVYRNTIGALQYLTNTRPDIAYIINQLSQFLQKP 185
           DLKPAPSPS VGKNL AFGGTPLEDPFVYRNTIGALQYLTNTRPDIAYI+NQLSQFLQKP
Sbjct: 138 DLKPAPSPSAVGKNLSAFGGTPLEDPFVYRNTIGALQYLTNTRPDIAYIVNQLSQFLQKP 197

BLAST of Pay0015176 vs. ExPASy TrEMBL
Match: A0A1S4E1U4 (uncharacterized mitochondrial protein AtMg00810-like isoform X2 OS=Cucumis melo OX=3656 GN=LOC107991581 PE=4 SV=1)

HSP 1 Score: 255.8 bits (652), Expect = 2.0e-64
Identity = 172/391 (43.99%), Postives = 181/391 (46.29%), Query Frame = 0

Query: 1   MEEEYSALLKENTWSLM------------------------------------------- 60
           M+EEYSALLK NTWSL+                                           
Sbjct: 20  MDEEYSALLKANTWSLVPPSPSQNVVGSKWVFRLKRHTDGSILRYKARMVAKGFHQHPGV 79

Query: 61  -----FNPVIKASTIRVVLSIAVTNGWLLRQLDFNNAFLNGHLEENVYMMQPPGYVHLSY 120
                F+PVIKASTIRVVLSIAV NGW LRQLDFNNAFLNGHLEENVYM QPPGYVH SY
Sbjct: 80  DFFETFSPVIKASTIRVVLSIAVPNGWPLRQLDFNNAFLNGHLEENVYMTQPPGYVHPSY 139

Query: 121 PNYA-------------------------------------------------------- 180
           PNY                                                         
Sbjct: 140 PNYVCKLNKAIYGLKQAPCTWNATLSKELLKWGFINSRSDSSLFIFRRNNSVVLLLVYVD 199

Query: 181 --------------------------------------LNYLESGFILNQGKYISDLLHK 192
                                                 +NYLESGFILNQ KYISDLLHK
Sbjct: 200 DIIVTGNDSVLISTLIKSLDKQFALKDLGRLTYFLGFQVNYLESGFILNQEKYISDLLHK 259

BLAST of Pay0015176 vs. ExPASy TrEMBL
Match: A0A438FXI0 (Retrovirus-related Pol polyprotein from transposon RE1 OS=Vitis vinifera OX=29760 GN=RE1_1550 PE=4 SV=1)

HSP 1 Score: 252.3 bits (643), Expect = 2.2e-63
Identity = 140/302 (46.36%), Postives = 174/302 (57.62%), Query Frame = 0

Query: 18  FNPVIKASTIRVVLSIAVTNGWLLRQLDFNNAFLNGHLEENVYMMQPPGYVHLSYPNYAL 77
           F+PVIKASTIRVV ++A+T  W +RQ+DFNNAFLNG + E VY+ QP G+V  S+P +  
Sbjct: 643 FSPVIKASTIRVVFTLAITYNWEIRQIDFNNAFLNGEITETVYLSQPAGFVSTSHPQHVC 702

Query: 78  NYL---------------------------------ESGFILNQGKYISDLLHKLQLSDL 137
           N +                                  +G  L Q KY +DLL K ++   
Sbjct: 703 NNVPLVQTLIQDLQNRFALKDLGLVKDFLGFEALRTTTGLHLTQSKYTTDLLIKTKMHSA 762

Query: 138 KPAPSPSVVGKNLFAFGGTPLEDPFVYRNTIGALQYLTNTRPDIAYIINQLSQFLQKPTD 197
           KP P+P      L A  G    DP +YR+TIGALQYLT  RPDIA+ +N+LSQ+LQ+PT+
Sbjct: 763 KPVPTPMSAALKLHAASGPAFSDPTLYRSTIGALQYLTYIRPDIAFAVNKLSQYLQQPTE 822

Query: 198 LHWQAVK----------------------CKQTVVARSSTKSEYRALALVASEVIWLKQL 257
           LHW A K                        Q VVARSSTK+EYRALA  + EV WL+ L
Sbjct: 823 LHWTACKRVLRYLKGIVHRGLHFTPASSLHLQPVVARSSTKAEYRALAHASIEVAWLRSL 882

Query: 258 LLELTSYPSRKPVIWCDNISSGALAMNPVFHARTKHIEIDVHFVRDQVLKGALEVRYVSS 265
             EL       PVIWCDN  +GALA NPVFH+RTKHIE+DV +VR+QVL   L V YV S
Sbjct: 883 FSELGISLVNTPVIWCDNQGAGALAANPVFHSRTKHIEVDVRYVREQVLDKKLVVSYVPS 942

BLAST of Pay0015176 vs. NCBI nr
Match: KAA0051519.1 (putative mitochondrial protein [Cucumis melo var. makuwa] >TYK24147.1 putative mitochondrial protein [Cucumis melo var. makuwa])

HSP 1 Score: 448.4 bits (1152), Expect = 4.4e-122
Identity = 245/340 (72.06%), Postives = 245/340 (72.06%), Query Frame = 0

Query: 18  FNPVIKASTIRVVLSIAVTNGWLLRQLDFNNAFLNGHLEENVYMMQPPGYVHLSYPNYAL 77
           FNPVIKASTIRVVLSIAVTNGWLLRQLDFNNAFLNGHLEENVYMMQPPGYVHLSYPNYAL
Sbjct: 18  FNPVIKASTIRVVLSIAVTNGWLLRQLDFNNAFLNGHLEENVYMMQPPGYVHLSYPNYAL 77

Query: 78  -----------------------------------NYLESGFILNQGKYISDLLHKLQLS 137
                                              NYLESGFILNQGKYISDLLHKLQLS
Sbjct: 78  TGNDSVLISTLIKSLDKQFALKDLGRLTYFLGFQVNYLESGFILNQGKYISDLLHKLQLS 137

Query: 138 DLKPAPSPSVVGKNLFAFGGTPLEDPFVYRNTIGALQYLTNTRPDIAYIINQLSQFLQKP 197
           DLKPAPS SVVGKNLFAFGGTPLEDPFVYRNTIGALQYLTNTRPDIAYIINQLSQFLQKP
Sbjct: 138 DLKPAPSSSVVGKNLFAFGGTPLEDPFVYRNTIGALQYLTNTRPDIAYIINQLSQFLQKP 197

Query: 198 TDLHWQAVKC-------------------------------------------------- 257
           TDLHWQAVKC                                                  
Sbjct: 198 TDLHWQAVKCVLKYLSGTKSFGLMFQQGDDLAISAYSDADWASNINDRKSIAAYCIFIGN 257

Query: 258 --------KQTVVARSSTKSEYRALALVASEVIWLKQLLLELTSYPSRKPVIWCDNISSG 265
                   KQTVVARSSTKSEYRALALVASEVIWLKQLLLELTSYPSRK VIWCDNISSG
Sbjct: 258 TLVFWSSKKQTVVARSSTKSEYRALALVASEVIWLKQLLLELTSYPSRKLVIWCDNISSG 317

BLAST of Pay0015176 vs. NCBI nr
Match: KAA0026101.1 (putative mitochondrial protein [Cucumis melo var. makuwa] >TYJ96310.1 putative mitochondrial protein [Cucumis melo var. makuwa])

HSP 1 Score: 310.8 bits (795), Expect = 1.1e-80
Identity = 184/343 (53.64%), Postives = 202/343 (58.89%), Query Frame = 0

Query: 18  FNPVIKASTIRVVLSIAVTNGWLLRQLDFNNAFLNGHLEENVYMMQPPGYVHLSYPNYA- 77
           F+PVIKASTIRVVLSIAVTNGW LRQLDFNNAFLNGHLEENVYMMQPPGYVH SYP Y  
Sbjct: 104 FSPVIKASTIRVVLSIAVTNGWPLRQLDFNNAFLNGHLEENVYMMQPPGYVHPSYPKYVC 163

Query: 78  ------------------------------------------------------------ 137
                                                                       
Sbjct: 164 KLNKAIYGLKQAPCAWNATLSKELLKWSFINSRSDSSLFIFRRNNSVVLLLVYVDDIIVT 223

Query: 138 ---------------------------------LNYLESGFILNQGKYISDLLHKLQLSD 197
                                            +NYL+SGFILNQ KYISDLLHKLQLSD
Sbjct: 224 SNDSVLISTLIKSLDKQFALKDLGRLTYFLGFQVNYLKSGFILNQEKYISDLLHKLQLSD 283

Query: 198 LKPAPSPSVVGKNLFAFGGTPLEDPFVYRNTIGALQYLTNTRPDIAYIINQLSQ--FLQK 257
           LKPAPSPSVVGKNL AFGGTPLEDPFVYR+TIGALQ LTNTRPDIAYI+NQLS    +  
Sbjct: 284 LKPAPSPSVVGKNLSAFGGTPLEDPFVYRSTIGALQNLTNTRPDIAYIVNQLSDDLVISA 343

Query: 258 PTDLHWQAVKCKQTVVARSSTKSEYRALALVASEVIWLKQLLLELTSYPSRKPVIWCDNI 265
             D+ W +      +  R S          +A+  +++   L  ++  PSRKPVIWCDNI
Sbjct: 344 YFDVDWAS-----NIDDRKS----------IAAYCVFIGNNL--VSCCPSRKPVIWCDNI 403

BLAST of Pay0015176 vs. NCBI nr
Match: KAA0042448.1 (putative mitochondrial protein [Cucumis melo var. makuwa] >TYK03510.1 putative mitochondrial protein [Cucumis melo var. makuwa])

HSP 1 Score: 266.9 bits (681), Expect = 1.8e-67
Identity = 141/202 (69.80%), Postives = 150/202 (74.26%), Query Frame = 0

Query: 18  FNPVIKASTIRVVLSIAVTNGWLLRQLDFNNAFLNGHLEENVYMMQPPGYVHLSYPNYAL 77
           F+ +IKASTIRVVLSIAVTNGW  RQL+FNNAFLNGHLE+ VYM QPPGYVH SYPNY L
Sbjct: 18  FSLIIKASTIRVVLSIAVTNGWPFRQLNFNNAFLNGHLEKKVYMKQPPGYVHPSYPNYVL 77

Query: 78  -----------------------------------NYLESGFILNQGKYISDLLHKLQLS 137
                                              NYLESGFILNQ KYISDLLHKLQL+
Sbjct: 78  TGNDSVLISTLIKSLDKQFALKDLGRLTYFLGFQVNYLESGFILNQEKYISDLLHKLQLN 137

Query: 138 DLKPAPSPSVVGKNLFAFGGTPLEDPFVYRNTIGALQYLTNTRPDIAYIINQLSQFLQKP 185
           DLKPAPSPS VGKNL AFGGTPLEDPFVYRNTIGALQYLTNTRPDIAYI+NQLSQFLQKP
Sbjct: 138 DLKPAPSPSAVGKNLSAFGGTPLEDPFVYRNTIGALQYLTNTRPDIAYIVNQLSQFLQKP 197

BLAST of Pay0015176 vs. NCBI nr
Match: XP_016902198.1 (PREDICTED: uncharacterized mitochondrial protein AtMg00810-like isoform X2 [Cucumis melo] >XP_016902199.1 PREDICTED: uncharacterized mitochondrial protein AtMg00810-like isoform X2 [Cucumis melo] >XP_016902200.1 PREDICTED: uncharacterized mitochondrial protein AtMg00810-like isoform X2 [Cucumis melo] >XP_016902201.1 PREDICTED: uncharacterized mitochondrial protein AtMg00810-like isoform X2 [Cucumis melo] >XP_016902202.1 PREDICTED: uncharacterized mitochondrial protein AtMg00810-like isoform X2 [Cucumis melo])

HSP 1 Score: 255.8 bits (652), Expect = 4.2e-64
Identity = 172/391 (43.99%), Postives = 181/391 (46.29%), Query Frame = 0

Query: 1   MEEEYSALLKENTWSLM------------------------------------------- 60
           M+EEYSALLK NTWSL+                                           
Sbjct: 20  MDEEYSALLKANTWSLVPPSPSQNVVGSKWVFRLKRHTDGSILRYKARMVAKGFHQHPGV 79

Query: 61  -----FNPVIKASTIRVVLSIAVTNGWLLRQLDFNNAFLNGHLEENVYMMQPPGYVHLSY 120
                F+PVIKASTIRVVLSIAV NGW LRQLDFNNAFLNGHLEENVYM QPPGYVH SY
Sbjct: 80  DFFETFSPVIKASTIRVVLSIAVPNGWPLRQLDFNNAFLNGHLEENVYMTQPPGYVHPSY 139

Query: 121 PNYA-------------------------------------------------------- 180
           PNY                                                         
Sbjct: 140 PNYVCKLNKAIYGLKQAPCTWNATLSKELLKWGFINSRSDSSLFIFRRNNSVVLLLVYVD 199

Query: 181 --------------------------------------LNYLESGFILNQGKYISDLLHK 192
                                                 +NYLESGFILNQ KYISDLLHK
Sbjct: 200 DIIVTGNDSVLISTLIKSLDKQFALKDLGRLTYFLGFQVNYLESGFILNQEKYISDLLHK 259

BLAST of Pay0015176 vs. NCBI nr
Match: RVW64659.1 (Retrovirus-related Pol polyprotein from transposon RE1 [Vitis vinifera])

HSP 1 Score: 252.3 bits (643), Expect = 4.6e-63
Identity = 140/302 (46.36%), Postives = 174/302 (57.62%), Query Frame = 0

Query: 18  FNPVIKASTIRVVLSIAVTNGWLLRQLDFNNAFLNGHLEENVYMMQPPGYVHLSYPNYAL 77
           F+PVIKASTIRVV ++A+T  W +RQ+DFNNAFLNG + E VY+ QP G+V  S+P +  
Sbjct: 643 FSPVIKASTIRVVFTLAITYNWEIRQIDFNNAFLNGEITETVYLSQPAGFVSTSHPQHVC 702

Query: 78  NYL---------------------------------ESGFILNQGKYISDLLHKLQLSDL 137
           N +                                  +G  L Q KY +DLL K ++   
Sbjct: 703 NNVPLVQTLIQDLQNRFALKDLGLVKDFLGFEALRTTTGLHLTQSKYTTDLLIKTKMHSA 762

Query: 138 KPAPSPSVVGKNLFAFGGTPLEDPFVYRNTIGALQYLTNTRPDIAYIINQLSQFLQKPTD 197
           KP P+P      L A  G    DP +YR+TIGALQYLT  RPDIA+ +N+LSQ+LQ+PT+
Sbjct: 763 KPVPTPMSAALKLHAASGPAFSDPTLYRSTIGALQYLTYIRPDIAFAVNKLSQYLQQPTE 822

Query: 198 LHWQAVK----------------------CKQTVVARSSTKSEYRALALVASEVIWLKQL 257
           LHW A K                        Q VVARSSTK+EYRALA  + EV WL+ L
Sbjct: 823 LHWTACKRVLRYLKGIVHRGLHFTPASSLHLQPVVARSSTKAEYRALAHASIEVAWLRSL 882

Query: 258 LLELTSYPSRKPVIWCDNISSGALAMNPVFHARTKHIEIDVHFVRDQVLKGALEVRYVSS 265
             EL       PVIWCDN  +GALA NPVFH+RTKHIE+DV +VR+QVL   L V YV S
Sbjct: 883 FSELGISLVNTPVIWCDNQGAGALAANPVFHSRTKHIEVDVRYVREQVLDKKLVVSYVPS 942

BLAST of Pay0015176 vs. TAIR 10
Match: AT4G23160.1 (cysteine-rich RLK (RECEPTOR-like protein kinase) 8 )

HSP 1 Score: 116.3 bits (290), Expect = 3.7e-26
Identity = 101/388 (26.03%), Postives = 141/388 (36.34%), Query Frame = 0

Query: 18  FNPVIKASTIRVVLSIAVTNGWLLRQLDFNNAFLNGHLEENVYMMQPPGYVHL---SYPN 77
           F+PV K ++++++L+I+    + L QLD +NAFLNG L+E +YM  PPGY      S P 
Sbjct: 167 FSPVCKLTSVKLILAISAIYNFTLHQLDISNAFLNGDLDEEIYMKLPPGYAARQGDSLPP 226

Query: 78  YALNYLE----------------------------------------------------- 137
            A+ YL+                                                     
Sbjct: 227 NAVCYLKKSIYGLKQASRQWFLKFSVTLIGFGFVQSHSDHTYFLKITATLFLCVLVYVDD 286

Query: 138 ------------------------------------------SGFILNQGKYISDLLHKL 197
                                                     +G  + Q KY  DLL + 
Sbjct: 287 IIICSNNDAAVDELKSQLKSCFKLRDLGPLKYFLGLEIARSAAGINICQRKYALDLLDET 346

Query: 198 QLSDLKPAPSPSVVGKNLFAFGGTPLEDPFVYRNTIGALQYLTNTRPDIAYIINQLSQFL 250
            L   KP+  P        A  G    D   YR  IG L YL  TR DI++ +N+LSQF 
Sbjct: 347 GLLGCKPSSVPMDPSVTFSAHSGGDFVDAKAYRRLIGRLMYLQITRLDISFAVNKLSQFS 406

BLAST of Pay0015176 vs. TAIR 10
Match: ATMG00810.1 (DNA/RNA polymerases superfamily protein )

HSP 1 Score: 65.9 bits (159), Expect = 5.7e-11
Identity = 55/199 (27.64%), Postives = 82/199 (41.21%), Query Frame = 0

Query: 58  NVYMMQPPGYVHLSYPNYALNYLESGFILNQGKYISDLLHKLQLSDLKPAPSPSVVGKNL 117
           + + M+  G VH  +    +    SG  L+Q KY   +L+   + D KP  +P  +  N 
Sbjct: 29  STFSMKDLGPVHY-FLGIQIKTHPSGLFLSQTKYAEQILNNAGMLDCKPMSTPLPLKLN- 88

Query: 118 FAFGGTPLEDPFVYRNTIGALQYLTNTRPDIAYIINQLSQFLQKPT-------------- 177
            +       DP  +R+ +GALQYLT TRPDI+Y +N + Q + +PT              
Sbjct: 89  SSVSTAKYPDPSDFRSIVGALQYLTLTRPDISYAVNIVCQRMHEPTLADFDLLKRVLRYV 148

Query: 178 ----------------------DLHWQA--------------VKC--------KQTVVAR 199
                                 D  W                + C        +Q  V+R
Sbjct: 149 KGTIFHGLYIHKNSKLNVQAFCDSDWAGCTSTRRSTTGFCTFLGCNIISWSAKRQPTVSR 208

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Q94HW22.0e-4531.58Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana O... [more]
Q9ZT946.5e-4430.58Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana O... [more]
P109781.2e-1823.83Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum... [more]
P041468.1e-1025.51Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3[more]
P925198.1e-1027.64Uncharacterized mitochondrial protein AtMg00810 OS=Arabidopsis thaliana OX=3702 ... [more]
Match NameE-valueIdentityDescription
A0A5D3DKK92.1e-12272.06Putative mitochondrial protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_s... [more]
A0A5D3B8X55.3e-8153.64Putative mitochondrial protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_s... [more]
A0A5D3BWM88.8e-6869.80Putative mitochondrial protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_s... [more]
A0A1S4E1U42.0e-6443.99uncharacterized mitochondrial protein AtMg00810-like isoform X2 OS=Cucumis melo ... [more]
A0A438FXI02.2e-6346.36Retrovirus-related Pol polyprotein from transposon RE1 OS=Vitis vinifera OX=2976... [more]
Match NameE-valueIdentityDescription
KAA0051519.14.4e-12272.06putative mitochondrial protein [Cucumis melo var. makuwa] >TYK24147.1 putative m... [more]
KAA0026101.11.1e-8053.64putative mitochondrial protein [Cucumis melo var. makuwa] >TYJ96310.1 putative m... [more]
KAA0042448.11.8e-6769.80putative mitochondrial protein [Cucumis melo var. makuwa] >TYK03510.1 putative m... [more]
XP_016902198.14.2e-6443.99PREDICTED: uncharacterized mitochondrial protein AtMg00810-like isoform X2 [Cucu... [more]
RVW64659.14.6e-6346.36Retrovirus-related Pol polyprotein from transposon RE1 [Vitis vinifera][more]
Match NameE-valueIdentityDescription
AT4G23160.13.7e-2626.03cysteine-rich RLK (RECEPTOR-like protein kinase) 8 [more]
ATMG00810.15.7e-1127.64DNA/RNA polymerases superfamily protein [more]
InterPro
Analysis Name: InterPro Annotations of Melon (Payzawat) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR013103Reverse transcriptase, RNA-dependent DNA polymerasePFAMPF07727RVT_2coord: 14..75
e-value: 2.4E-13
score: 50.3
NoneNo IPR availablePANTHERPTHR11439:SF343SUBFAMILY NOT NAMEDcoord: 151..264
NoneNo IPR availablePANTHERPTHR11439GAG-POL-RELATED RETROTRANSPOSONcoord: 151..264
NoneNo IPR availableCDDcd09272RNase_HI_RT_Ty1coord: 173..264
e-value: 3.07339E-44
score: 144.533
IPR043502DNA/RNA polymerase superfamilySUPERFAMILY56672DNA/RNA polymerasescoord: 11..245

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Pay0015176.1Pay0015176.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005488 binding