Pay0014852 (gene) Melon (Payzawat) v1

Overview


Name	Pay0014852
Type	gene
Organism	Cucumis melo L. var. inodorus cv. Payzawat (Melon (Payzawat) v1)
Description	Dipeptide epimerase
Location	chr11: 7900106 .. 7903354 (+)
RNA-Seq Expression	Pay0014852
Synteny	Pay0014852

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGATGCAGATCAGCGAGACTCTTCCTGGGCATCAATTTGCTTCTGTGAGTTGTAATCTATTAACTCATCGGATTTTGATTTTTTACTTCATTTTTCTTTTTTCGTTACTCAACCTGTCAAATGCGATGCATTAACAAGAATTGGTGTTACCTTACTTCATCAGGAATAGTGAATACCTTATCTTGAGATAAAAATTTTCTTACGTATAAGAATTTTGTTGCATTGGCTTCATGACGTAATGCTTGGAATGCCCTGTATTTATAAAAACAATCCCTGAGGCCTGATGATTTGGTTTTTGAAAGTTGTGTTTATTTTGATAAAGACAACGAAACCTCTAGTCATCTCACTTTGGATATCAACCTTAGTGGTTTTGTTTTTGGAACACTCCTAACATATGTTCACACCATATAACATTTGTATTCTTAGTCATATTTTAAAAACAACTTTGTAAGAACTTTTTTTCTTCCAAACTTGGCATGATTTTTAAGAATATGGTTTAGAAATAGATAACAAAACAAAGAAAGTCATAGGCGAGATGAGTGTTTATAAACTTAACTTTTAGAAACCATAAACCAAATGGTACAAAAAGGACTCGAGCTTTAAGTCCATGTTTTTTTAAAGATTGTTTATCATCTATACTATTGAAGGTTAGAGCAGAAGTCGAGATGGCCTTGATTGATGCTATTGCTAACAGCAATGCCGCTTTGAAAACTATTTGGTGGAGTTCCAGACAGTATAACCACTGATATAACAGTAAGTCTCCTTTTATCTCCCAGTGAACGCATGTTTGAAATTCCAGACACTTCATTGGTTTTAATTTTTATTTTGGATGATCATCTAGTGGGGTTCTTTTACAATTCGTATATTGCTGGAAATTTTATTTTTAATCATGAACTGCAATGAACTCTTGGTTTTATCGCGGTAATCATAGTATATATGAGGATAAATAAAAATTCAAATTATATCAGTGAGAAGTAAGTCAAAAGATTGTCGTAGAACTACTCTGATCCATTTTATTTATGCAGATTCCTTACTTCTGCTTCTAATGCTGCCAAATTAACTGCAAAATATCGCGATAAGGGATTCTAGACGTTGAAGCTGAAGGTGGGAAAGGATCTAAAATCTGATATTGAAGTTCTTCAGTGCATCAGAATGGTCCATCCTGATTGTGAATTTGTCCTGGATGCTAACGAGGGATATGACACAGAAGAAGCTATCCAAGTTCTTGAAAAGTTACATAGTAAAGTGTAAGTCCTTCTCATCCCTGCAACGGGGCTTATGAAGGTATTCTCAGCCCATCCCCATATCTTGAACTTTGATTCATCAATGTCCTGTTTAATAACCAGTATCTTTGTTTTCTTAACTACTTAAAAAACTATATATATATATATATATATTCCCCATCTAAAACTAATTGTTTTTTTAAATTAAACTTGTGAACACTGCTAGCCTTGCCTATGAATTTCTTTAGTTTGCTATCTACTTTTTAGGTGTGTTTTCAAAATCCAACCTAAAATTTTAAAACTAGGGTTTGTTTTGGTAACCATTTTGTCTTTTGGTTTTTTGATTTTGCTAATTAAGCCTATTTGCTCCCCATCTCTTACAATGGTTTACATCTTATTATGTAGGATGGTTTAACCACATTTAAAAATAAAAACAACTTTTAAAAGCTATGTTTTTTAGTTTTCAAATTTTTGCTTCATTTTTTAAACTATTCGTAAAAAGTAGATAACAAATGAAGAAATTTTGAGGTGAATCAATAGCTTAAGTTTTAAAAACAAAAAATAACATGGTTACTGTTAGTGATATAATTAAATTTCCCTTCAACCACCAACTTAAGCTTTTGGGTGCATTTGTGGTTTATTATGGTATCGAAGCGGGTGGTCTAAAGAGCCCCTGCATTGTTGTTTTCAACCCAATTAAAAATTAATTTCCATCTTTTGGGCCTTTCACCTTTCAAACATTTCAAGCTCACAAGTGAGGGAGAGTGTTAGTGATATATAATTAAATTTCTCTTCAACCACCAACTTAAGCTTTCGGGTGAATTGGTGGTTTAATAGTTACCAAACAATACCTAAAAGAACAGGTTTATTGTGTTTGAAAGTTAGCTATGAATTCAAATCTTTCCTTAAAACAGATTGAACTTCACAGTAAAAAAAAAACAAGCACGCTTTTCAAAAACTCAAATAGCTATCAAAGAAGATTAAATTTGTTTTTGTTTTTGAAATTTATATATAAATTCAAATGGTTCTTTTACGAAGAACGCAATCACAATTTTACAAAAACTAAAAATTAAATGGTGTTATCAAAAAGGCTAAAGTCCCATAAACCTAACATCGGAAGTAATATGGTAACTGTGATCTGATTATAGTTTGGAATGTAGTTTCTGGTGCTGTGTACAAGTTCACAAAGTCCAGAGGCCATGGTGGTTTCCTTCATGGGGATAACATTGCATTGTGAGTTTATTTTCCCTCGTTTTTTTGGGTAATTTAGAATTTTGATCTTTGTATTAAATAAATATGGGTAAATACCTTAGTACTTTTTTCCAATATTCATCAGCCTTCATACCTTATAGATGTAGATCTTGATCGTATCTTCCTATCCATCTGATTTATTGCTGCACATCCACAAGTAGTTCTGTCAAATGACCACACATGGTCAAATTGTCGAGGAATGGTGACCGTTTTATTTGAACTTCACCTCTTGTTTGGCTAAAGGAGTTCTTAAATTAATTGTGGGCTCTGCCACGTGTTAACATCAATTTTGACTTATCAACTCCTTACATTTTGATTTGTTATAGACCTATAGATAAACAACTATCACTTATTGTCCAAAACACTCACAATTGCCAACGACTTTAACATGGAATTCAAAATGTACAACTTACTTTCCTCCTCATCTAGATATGTCCTTGGATTATAACAAACATTGATGTTTCCCAAATAAACAATACTCAAGTGTATCATGGGCTGCATTCATCTTTTTGCGGTCCATTTCAACCACATAAAAGAAAAAAACTCAAAAACATTTAAAAACTACTTGAGTCCATCTTCAGTTGCATTCATCTTTCTGCAATTCACCCAAGTGTTCAACTTCAAGTTTCAAGTGGCAAACCTTTTTTAAACCCCACACGCACACAAACCCAAAGAATCATCAAGAAGAGTGCTAAAAGAAAAGATGAAGGCATCAAGAATTGGGATAATCCTAATGATAGTAGGAGTGATATTATCGATATCAAACTCAAATGA

mRNA sequence

ATGATGCAGATCAGCGAGACTCTTCCTGGGCATCAATTTGCTTCTGTTAGAGCAGAAGTCGAGATGGCCTTGATTGATGCTATTGCTAACAGCAATGCCGCTTTGAAAACTATTTGGTGGAGTTCCAGACATGCATCAGAATGGTCCATCCTGATTGTGAATTTGTCCTGGATGCTAACGAGGGATATGACACAGAAGAAGCTATCCAAGTTCTTGAAAAGTTACATAGTAAAGTTTTCTGGTGCTGTGTACAAGTTCACAAAGTCCAGAGGCCATGGTGGTTTCCTTCATGGGGATAACATTGCATTTTGCATTCATCTTTCTGCAATTCACCCAAGTGTTCAACTTCAAGTTTCAAGTGGCAAACCTTTTTTAAACCCCACACGCACACAAACCCAAAGAATCATCAAGAAGAGTGCTAAAAGAAAAGATGAAGGCATCAAGAATTGGGATAATCCTAATGATAGTAGGAGTGATATTATCGATATCAAACTCAAATGA

Coding sequence (CDS)

ATGATGCAGATCAGCGAGACTCTTCCTGGGCATCAATTTGCTTCTGTTAGAGCAGAAGTCGAGATGGCCTTGATTGATGCTATTGCTAACAGCAATGCCGCTTTGAAAACTATTTGGTGGAGTTCCAGACATGCATCAGAATGGTCCATCCTGATTGTGAATTTGTCCTGGATGCTAACGAGGGATATGACACAGAAGAAGCTATCCAAGTTCTTGAAAAGTTACATAGTAAAGTTTTCTGGTGCTGTGTACAAGTTCACAAAGTCCAGAGGCCATGGTGGTTTCCTTCATGGGGATAACATTGCATTTTGCATTCATCTTTCTGCAATTCACCCAAGTGTTCAACTTCAAGTTTCAAGTGGCAAACCTTTTTTAAACCCCACACGCACACAAACCCAAAGAATCATCAAGAAGAGTGCTAAAAGAAAAGATGAAGGCATCAAGAATTGGGATAATCCTAATGATAGTAGGAGTGATATTATCGATATCAAACTCAAATGA

Protein sequence

MMQISETLPGHQFASVRAEVEMALIDAIANSNAALKTIWWSSRHASEWSILIVNLSWMLTRDMTQKKLSKFLKSYIVKFSGAVYKFTKSRGHGGFLHGDNIAFCIHLSAIHPSVQLQVSSGKPFLNPTRTQTQRIIKKSAKRKDEGIKNWDNPNDSRSDIIDIKLK

Homology

[Close]

BLAST of Pay0014852 vs. ExPASy Swiss-Prot
Match: B9I2J6 (L-Ala-D/L-amino acid epimerase OS=Populus trichocarpa OX=3694 GN=POPTR_0012s05040g PE=3 SV=2)

HSP 1 Score: 47.4 bits (111), Expect = 1.9e-04
Identity = 22/29 (75.86%), Postives = 26/29 (89.66%), Query Frame = 0


Query: 3   QISETLPGHQFASVRAEVEMALIDAIANS 32
           ++SE LPGH+FASVRA VEMALIDA+A S
Sbjct: 144 RVSEILPGHEFASVRAGVEMALIDAVAKS 172

[Close]

BLAST of Pay0014852 vs. ExPASy TrEMBL
Match: A0A5A7UVA5 (Dipeptide epimerase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold274G004040 PE=3 SV=1)

HSP 1 Score: 57.4 bits (137), Expect = 6.7e-05
Identity = 28/31 (90.32%), Postives = 30/31 (96.77%), Query Frame = 0


Query: 1   MMQISETLPGHQFASVRAEVEMALIDAIANS 32
           MMQISETLPGH+FASVRA VEMALIDA+ANS
Sbjct: 151 MMQISETLPGHEFASVRAGVEMALIDAVANS 181

[Close]

BLAST of Pay0014852 vs. ExPASy TrEMBL
Match: A0A5D3DYK1 (Dipeptide epimerase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold629G00810 PE=3 SV=1)

HSP 1 Score: 57.4 bits (137), Expect = 6.7e-05
Identity = 28/31 (90.32%), Postives = 30/31 (96.77%), Query Frame = 0


Query: 1   MMQISETLPGHQFASVRAEVEMALIDAIANS 32
           MMQISETLPGH+FASVRA VEMALIDA+ANS
Sbjct: 151 MMQISETLPGHEFASVRAGVEMALIDAVANS 181

[Close]

BLAST of Pay0014852 vs. ExPASy TrEMBL
Match: A0A0A0LUZ1 (Dipeptide epimerase OS=Cucumis sativus OX=3659 GN=Csa_1G024250 PE=3 SV=1)

HSP 1 Score: 57.4 bits (137), Expect = 6.7e-05
Identity = 28/31 (90.32%), Postives = 30/31 (96.77%), Query Frame = 0


Query: 1  MMQISETLPGHQFASVRAEVEMALIDAIANS 32
          MMQISETLPGH+FASVRA VEMALIDA+ANS
Sbjct: 23 MMQISETLPGHEFASVRAGVEMALIDAVANS 53

[Close]

BLAST of Pay0014852 vs. ExPASy TrEMBL
Match: A0A1S3BWB1 (Dipeptide epimerase OS=Cucumis melo OX=3656 GN=LOC103494142 PE=3 SV=1)

HSP 1 Score: 57.4 bits (137), Expect = 6.7e-05
Identity = 28/31 (90.32%), Postives = 30/31 (96.77%), Query Frame = 0


Query: 1   MMQISETLPGHQFASVRAEVEMALIDAIANS 32
           MMQISETLPGH+FASVRA VEMALIDA+ANS
Sbjct: 151 MMQISETLPGHEFASVRAGVEMALIDAVANS 181

[Close]

BLAST of Pay0014852 vs. ExPASy TrEMBL
Match: A0A6J1KM07 (Dipeptide epimerase OS=Cucurbita maxima OX=3661 GN=LOC111495771 PE=3 SV=1)

HSP 1 Score: 55.8 bits (133), Expect = 1.9e-04
Identity = 27/31 (87.10%), Postives = 29/31 (93.55%), Query Frame = 0


Query: 1   MMQISETLPGHQFASVRAEVEMALIDAIANS 32
           MMQI ETLPGH+FASVRA VEMALIDA+ANS
Sbjct: 151 MMQIGETLPGHEFASVRAGVEMALIDAVANS 181

[Close]

BLAST of Pay0014852 vs. NCBI nr
Match: XP_004137322.1 (L-Ala-D/L-amino acid epimerase [Cucumis sativus] >KGN63844.2 hypothetical protein Csa_013780 [Cucumis sativus])

HSP 1 Score: 57.4 bits (137), Expect = 1.4e-04
Identity = 28/31 (90.32%), Postives = 30/31 (96.77%), Query Frame = 0


Query: 1   MMQISETLPGHQFASVRAEVEMALIDAIANS 32
           MMQISETLPGH+FASVRA VEMALIDA+ANS
Sbjct: 152 MMQISETLPGHEFASVRAGVEMALIDAVANS 182

[Close]

BLAST of Pay0014852 vs. NCBI nr
Match: KAA0058096.1 (L-Ala-D/L-amino acid epimerase [Cucumis melo var. makuwa])

HSP 1 Score: 57.4 bits (137), Expect = 1.4e-04
Identity = 28/31 (90.32%), Postives = 30/31 (96.77%), Query Frame = 0


Query: 1   MMQISETLPGHQFASVRAEVEMALIDAIANS 32
           MMQISETLPGH+FASVRA VEMALIDA+ANS
Sbjct: 151 MMQISETLPGHEFASVRAGVEMALIDAVANS 181

[Close]

BLAST of Pay0014852 vs. NCBI nr
Match: XP_008453435.1 (PREDICTED: L-Ala-D/L-amino acid epimerase [Cucumis melo] >TYK28449.1 L-Ala-D/L-amino acid epimerase [Cucumis melo var. makuwa])

HSP 1 Score: 57.4 bits (137), Expect = 1.4e-04
Identity = 28/31 (90.32%), Postives = 30/31 (96.77%), Query Frame = 0


Query: 1   MMQISETLPGHQFASVRAEVEMALIDAIANS 32
           MMQISETLPGH+FASVRA VEMALIDA+ANS
Sbjct: 151 MMQISETLPGHEFASVRAGVEMALIDAVANS 181

[Close]

BLAST of Pay0014852 vs. NCBI nr
Match: XP_022933096.1 (L-Ala-D/L-amino acid epimerase isoform X2 [Cucurbita moschata])

HSP 1 Score: 55.8 bits (133), Expect = 4.0e-04
Identity = 27/31 (87.10%), Postives = 29/31 (93.55%), Query Frame = 0


Query: 1   MMQISETLPGHQFASVRAEVEMALIDAIANS 32
           MMQI ETLPGH+FASVRA VEMALIDA+ANS
Sbjct: 151 MMQIGETLPGHEFASVRAGVEMALIDAVANS 181

[Close]

BLAST of Pay0014852 vs. NCBI nr
Match: KAG7021626.1 (L-Ala-D/L-amino acid epimerase [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 55.8 bits (133), Expect = 4.0e-04
Identity = 27/31 (87.10%), Postives = 29/31 (93.55%), Query Frame = 0


Query: 1   MMQISETLPGHQFASVRAEVEMALIDAIANS 32
           MMQI ETLPGH+FASVRA VEMALIDA+ANS
Sbjct: 151 MMQIGETLPGHEFASVRAGVEMALIDAVANS 181

[Close]

BLAST of Pay0014852 vs. TAIR 10
Match: AT3G18270.1 (cytochrome P450, family 77, subfamily A, polypeptide 5 pseudogene )

HSP 1 Score: 42.4 bits (98), Expect = 4.3e-04
Identity = 20/31 (64.52%), Postives = 24/31 (77.42%), Query Frame = 0


Query: 1   MMQISETLPGHQFASVRAEVEMALIDAIANS 32
           + +I   LPGHQFASVRA +EMA+IDA A S
Sbjct: 130 LQEIGRFLPGHQFASVRAGMEMAMIDAAAKS 160

The following BLAST results are available for this feature:

BLAST of Pay0014852 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
B9I2J6	1.9e-04	75.86	L-Ala-D/L-amino acid epimerase OS=Populus trichocarpa OX=3694 GN=POPTR_0012s0504...	[more]

BLAST of Pay0014852 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7UVA5	6.7e-05	90.32	Dipeptide epimerase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold274G...	[more]
A0A5D3DYK1	6.7e-05	90.32	Dipeptide epimerase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold629G...	[more]
A0A0A0LUZ1	6.7e-05	90.32	Dipeptide epimerase OS=Cucumis sativus OX=3659 GN=Csa_1G024250 PE=3 SV=1	[more]
A0A1S3BWB1	6.7e-05	90.32	Dipeptide epimerase OS=Cucumis melo OX=3656 GN=LOC103494142 PE=3 SV=1	[more]
A0A6J1KM07	1.9e-04	87.10	Dipeptide epimerase OS=Cucurbita maxima OX=3661 GN=LOC111495771 PE=3 SV=1	[more]

BLAST of Pay0014852 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004137322.1	1.4e-04	90.32	L-Ala-D/L-amino acid epimerase [Cucumis sativus] >KGN63844.2 hypothetical protei...	[more]
KAA0058096.1	1.4e-04	90.32	L-Ala-D/L-amino acid epimerase [Cucumis melo var. makuwa]	[more]
XP_008453435.1	1.4e-04	90.32	PREDICTED: L-Ala-D/L-amino acid epimerase [Cucumis melo] >TYK28449.1 L-Ala-D/L-a...	[more]
XP_022933096.1	4.0e-04	87.10	L-Ala-D/L-amino acid epimerase isoform X2 [Cucurbita moschata]	[more]
KAG7021626.1	4.0e-04	87.10	L-Ala-D/L-amino acid epimerase [Cucurbita argyrosperma subsp. argyrosperma]	[more]

BLAST of Pay0014852 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G18270.1	4.3e-04	64.52	cytochrome P450, family 77, subfamily A, polypeptide 5 pseudogene	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (Payzawat) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 137..157
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 135..157

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Pay0014852.1	Pay0014852.1	mRNA