Pay0014811 (gene) Melon (Payzawat) v1

Overview


Name	Pay0014811
Type	gene
Organism	Cucumis melo L. var. inodorus cv. Payzawat (Melon (Payzawat) v1)
Description	50S ribosomal protein L17
Location	chr04: 33311908 .. 33314313 (-)
RNA-Seq Expression	Pay0014811
Synteny	Pay0014811

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AAAGAAGTTGCAATATATGTAAATTTCTACTGAAGGCCTCCCCTCCCAGACGACCTAACTATTTCTTATCCTGTTATCCATACACGGACACCCAAACAATGGCAATGGCGATTACAACGGCAACAGCAAATGGCCGATGGAGCTTTACAACGTTGAGGTCAGCGCTGCCTTCAGTGGGATCGGAAAATTGTACTCGCACTCGCGTTAGCTTCCCGTTGTCCAATGCTCGAGTCAGTCGCAGAACCTGCAGCAAACCAATCGCCTCCTTTTCGGGTCTATGCCCCTTAAACCCCCTTATTTCTACTGGATCAGCAGGTAACTCCATACTCTCTCACTTGTTACCTAGGTCGCCCCCTTTAATTCGATTTTTCTTCCGCTAATGCACGCGCTTATTCTGCTTCTAATGGCTGATAGATTCACGACCTATGAATTGAATGGTTCTGCAATTATTTACTATTTATTTTATTTTTAAAATCTTGATTTCTACTTGAATTGATACGTCCCTTTTTGGCTTTTTCTCGGCACCCTTCTGGTACAAATACTGTACAAGTCTCCTGCTAATTTTGGTAACATTTGAAAATCGTAAGTTGATCTTCGCAGGAAATGAAACGTTGTTCCCCGGTTTGTTCCATAGCTGTTGAGTAACAATCGGAGAGAAAAACGTGAAAATTTTTCTTTCGGGGGGGGTTGTCTTCCTCAAACTCTGTTATCGAAATTAGGTTTACATTTAGTATCTGGTTGACGTTTTGATTGTATTCCTGGGCCTGAAATATGATAAATAAATATGACCATTGAAGTTGGTGTTTATTCTGGGTTTCTATCATTAAGAGGGTGTGAACTTACGAGGGAACCAGGAAAGGGATGGAAATAGGAATATTTAGAATAGTAGGAAGCTCAAATGAATTATTTCGTTCGATAAGGCGGAGTGAATATAAATAATATGCAAGGAGATGCGGAGAATATTACCCACCTTATGAGAGAGAGCCACAAATCAGAAAACAGTAACAAATATAACAAATCAAACAACACCATTTGCAAGCGAATTCAAACGTTTTTCGGGTATGTTGTTCCATTACCACATTCAAACATGAATTGAAACCTGAGCTCTTGGGCACTTTAATTTTATTTTCAACACATTACGTTTAAATTGCCGAGTGGTCAATATCATGTATTGCTTAGTACTAGGTGGATACAAACCTTACATATAAGGTCAAAGTATTGTGGGCATGATATAAATGCTCTAGCATATTGGTCTCATAGAGTTTTTTATACTTTTACATATCCATTAATGAGATAAGTTAATGTTTCAACATTAAATTTTTAGTTAATATGAATTCTAGATGCATTTGTTATACAAATGGTCTGATGTATTTGAGGTTCTGAATGTCAAATAGGATTGTAGTTTATTCACGTTGAATATTGTAAAGAGTTAGGACGTTTTTTTTAAGATTAGATGATGGGTGCCATATGCTACCCCATACGCCAACAATTATAATGAAAATTATATTTTGTCATTTGGTATTTAACAATTTTTTTTTAAAAATCATAAGCTAATAACGCATAGAATTCCTGAAATTTAAACAACTTTCTGTAATTTCTTTTCTATGTACTAATTGTTATAGAACCTGTGATGTGCTTGTCCATCATGCAGATTACAACGACTTTGAACATAACTTCAAAATTGTTGATAATGGTAGCCGAGTTTTTGCCATGAGACATGGCAAGCGGGTACCTAAGCTAAATAGGCCTCCTGACCAACGACGTGCACTATTGCGAGGGCTCACCACCCAACTCCTTAAGCATGGTCGGATCAAAACCACCAGAACAAGAGCAAGTGCTATGCGTAAGTATGTTGACAAAATGATTACATTAGCAAAGGATGGTTCCTTGCATAAAAGGAGACAAGCTTTAGGCTTCATCTACGAAAAGCAGATTGTTCATGCATTATTTGCAGAAGTCCAAGATAGGTATGGGGAGAGAAACGGTGGATATACCAGAATTATAAGAACTCTGCCTAGGCGAGGGGACAATGCGCCTATGGCATACATTGAACTTGTCTGAATATTGGCCAGTTATTTTTGTATCGGCGGAGTCAACCAATTCTAGTAACGGAGTGAAGATTTAATCCTTTTCTAGAGTCTGCCTCATGTATGATTATAAACCTTGTATTAATATTTGCATACATATACATACATGATTGGACATAAATATCTTAAGTCAATTTGATCTACATTATGTGGGGCTTAGATTTTTTCCCATTCAAACTAATGTACACTAGTGGTCGGCTTGGAGGCTCGAGATGACCTTCTACGTTTTAACCTCATCAACGATTCAATATTATCCTCTCTGCACTCCGTTTTCGTTTATCCTCATGTAATTTTATCTCTATTTTCTCTCCTATCAAGC

mRNA sequence

AAAGAAGTTGCAATATATGTAAATTTCTACTGAAGGCCTCCCCTCCCAGACGACCTAACTATTTCTTATCCTGTTATCCATACACGGACACCCAAACAATGGCAATGGCGATTACAACGGCAACAGCAAATGGCCGATGGAGCTTTACAACGTTGAGGTCAGCGCTGCCTTCAGTGGGATCGGAAAATTGTACTCGCACTCGCGTTAGCTTCCCGTTGTCCAATGCTCGAGTCAGTCGCAGAACCTGCAGCAAACCAATCGCCTCCTTTTCGGGTCTATGCCCCTTAAACCCCCTTATTTCTACTGGATCAGCAGATTACAACGACTTTGAACATAACTTCAAAATTGTTGATAATGGTAGCCGAGTTTTTGCCATGAGACATGGCAAGCGGGTACCTAAGCTAAATAGGCCTCCTGACCAACGACGTGCACTATTGCGAGGGCTCACCACCCAACTCCTTAAGCATGGTCGGATCAAAACCACCAGAACAAGAGCAAGTGCTATGCGTAAGTATGTTGACAAAATGATTACATTAGCAAAGGATGGTTCCTTGCATAAAAGGAGACAAGCTTTAGGCTTCATCTACGAAAAGCAGATTGTTCATGCATTATTTGCAGAAGTCCAAGATAGGTATGGGGAGAGAAACGGTGGATATACCAGAATTATAAGAACTCTGCCTAGGCGAGGGGACAATGCGCCTATGGCATACATTGAACTTGTCTGAATATTGGCCAGTTATTTTTGTATCGGCGGAGTCAACCAATTCTAGTAACGGAGTGAAGATTTAATCCTTTTCTAGAGTCTGCCTCATGTATGATTATAAACCTTGTATTAATATTTGCATACATATACATACATGATTGGACATAAATATCTTAAGTCAATTTGATCTACATTATGTGGGGCTTAGATTTTTTCCCATTCAAACTAATGTACACTAGTGGTCGGCTTGGAGGCTCGAGATGACCTTCTACGTTTTAACCTCATCAACGATTCAATATTATCCTCTCTGCACTCCGTTTTCGTTTATCCTCATGTAATTTTATCTCTATTTTCTCTCCTATCAAGC

Coding sequence (CDS)

ATGGCAATGGCGATTACAACGGCAACAGCAAATGGCCGATGGAGCTTTACAACGTTGAGGTCAGCGCTGCCTTCAGTGGGATCGGAAAATTGTACTCGCACTCGCGTTAGCTTCCCGTTGTCCAATGCTCGAGTCAGTCGCAGAACCTGCAGCAAACCAATCGCCTCCTTTTCGGGTCTATGCCCCTTAAACCCCCTTATTTCTACTGGATCAGCAGATTACAACGACTTTGAACATAACTTCAAAATTGTTGATAATGGTAGCCGAGTTTTTGCCATGAGACATGGCAAGCGGGTACCTAAGCTAAATAGGCCTCCTGACCAACGACGTGCACTATTGCGAGGGCTCACCACCCAACTCCTTAAGCATGGTCGGATCAAAACCACCAGAACAAGAGCAAGTGCTATGCGTAAGTATGTTGACAAAATGATTACATTAGCAAAGGATGGTTCCTTGCATAAAAGGAGACAAGCTTTAGGCTTCATCTACGAAAAGCAGATTGTTCATGCATTATTTGCAGAAGTCCAAGATAGGTATGGGGAGAGAAACGGTGGATATACCAGAATTATAAGAACTCTGCCTAGGCGAGGGGACAATGCGCCTATGGCATACATTGAACTTGTCTGA

Protein sequence

MAMAITTATANGRWSFTTLRSALPSVGSENCTRTRVSFPLSNARVSRRTCSKPIASFSGLCPLNPLISTGSADYNDFEHNFKIVDNGSRVFAMRHGKRVPKLNRPPDQRRALLRGLTTQLLKHGRIKTTRTRASAMRKYVDKMITLAKDGSLHKRRQALGFIYEKQIVHALFAEVQDRYGERNGGYTRIIRTLPRRGDNAPMAYIELV

Homology

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BLAST of Pay0014811 vs. ExPASy Swiss-Prot
Match: Q9M385 (50S ribosomal protein L17, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=RPL17 PE=2 SV=1)

HSP 1 Score: 286.6 bits (732), Expect = 2.3e-76
Identity = 152/212 (71.70%), Postives = 171/212 (80.66%), Query Frame = 0


Query: 1   MAMAITTATANGRWSFTTLRSALPSVGSENCTRTRVSFPLSNAR---VSRRTCSKP-IAS 60
           MAMA  T + +  WS ++L+SALPS  S       +  P S++R     R   S P + S
Sbjct: 7   MAMATPTDSVSRVWSMSSLKSALPSTAS-------LRLPSSSSRRPVTLRLPISSPSLPS 66

Query: 61  FSGLCPLNPLISTGSADYNDFEHNFKIVDNGSRVFAMRHGKRVPKLNRPPDQRRALLRGL 120
           FSGL P+NPL+S G  D+  FE+ FKIVD G R++AMRHG+RVPKLNRPPDQR+ALLRGL
Sbjct: 67  FSGLSPVNPLLSIGLPDWQSFENGFKIVDGGGRIYAMRHGRRVPKLNRPPDQRKALLRGL 126

Query: 121 TTQLLKHGRIKTTRTRASAMRKYVDKMITLAKDGSLHKRRQALGFIYEKQIVHALFAEVQ 180
           TTQLLKHGRIKTTR RASAMRK+VDKMITLAKDGSLHKRRQALG+IYEKQIVHALFAEV 
Sbjct: 127 TTQLLKHGRIKTTRARASAMRKFVDKMITLAKDGSLHKRRQALGYIYEKQIVHALFAEVP 186

Query: 181 DRYGERNGGYTRIIRTLPRRGDNAPMAYIELV 209
           DRYGERNGGYTRIIRTLPRRGDNAPMAYIELV
Sbjct: 187 DRYGERNGGYTRIIRTLPRRGDNAPMAYIELV 211

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BLAST of Pay0014811 vs. ExPASy Swiss-Prot
Match: O80363 (50S ribosomal protein L17, chloroplastic OS=Nicotiana tabacum OX=4097 GN=RPL17 PE=2 SV=1)

HSP 1 Score: 282.7 bits (722), Expect = 3.3e-75
Identity = 145/204 (71.08%), Postives = 168/204 (82.35%), Query Frame = 0


Query: 8   ATANGRWSFTTLRSALPSVGSENCTRTRVSFPLSNARV---SRRTCSKPIASFSGLCPLN 67
           A+A+  WS + L+SALPS+   + +  R S   S +R+     ++ S+ + SF GL PL+
Sbjct: 2   ASASTTWSMSCLKSALPSIQPISSSSLRFSCGPSPSRLRICKPKSSSRLLHSFVGLAPLH 61

Query: 68  PLISTGSADYNDFEHNFKIVDNGSRVFAMRHGKRVPKLNRPPDQRRALLRGLTTQLLKHG 127
           PL+S  S D   FEH+F ++DNG RVFAMRHG++VPKLNRPPDQRRALLRGLTTQLLKHG
Sbjct: 62  PLLSLSSQDSTSFEHSFTVIDNGGRVFAMRHGRKVPKLNRPPDQRRALLRGLTTQLLKHG 121

Query: 128 RIKTTRTRASAMRKYVDKMITLAKDGSLHKRRQALGFIYEKQIVHALFAEVQDRYGERNG 187
           RIKTT+ RA A+RKYVDKMIT+AKDGSLHKRRQALGFIYEKQIVHALFAEV DRYGERNG
Sbjct: 122 RIKTTKARARAVRKYVDKMITMAKDGSLHKRRQALGFIYEKQIVHALFAEVPDRYGERNG 181

Query: 188 GYTRIIRTLPRRGDNAPMAYIELV 209
           GYTRIIRTLPRRGDNAPMAYIELV
Sbjct: 182 GYTRIIRTLPRRGDNAPMAYIELV 205

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BLAST of Pay0014811 vs. ExPASy Swiss-Prot
Match: P82194 (50S ribosomal protein L17, chloroplastic OS=Spinacia oleracea OX=3562 GN=RPL17 PE=1 SV=2)

HSP 1 Score: 224.2 bits (570), Expect = 1.4e-57
Identity = 108/126 (85.71%), Postives = 120/126 (95.24%), Query Frame = 0


Query: 83  IVDNGSRVFAMRHGKRVPKLNRPPDQRRALLRGLTTQLLKHGRIKTTRTRASAMRKYVDK 142
           ++DNG R FAM+HG+++ +L+RP DQRRALLRGLTTQLLKHGRIKTTR +ASAMRKYVDK
Sbjct: 1   MIDNGGRFFAMKHGRKIHRLSRPADQRRALLRGLTTQLLKHGRIKTTRAKASAMRKYVDK 60

Query: 143 MITLAKDGSLHKRRQALGFIYEKQIVHALFAEVQDRYGERNGGYTRIIRTLPRRGDNAPM 202
           MITLAK+GSLHKRRQALGFIYEKQIVHALFAEV +RYG+RNGGYTRIIRTLPRRGDNAPM
Sbjct: 61  MITLAKEGSLHKRRQALGFIYEKQIVHALFAEVPERYGDRNGGYTRIIRTLPRRGDNAPM 120

Query: 203 AYIELV 209
           AYIELV
Sbjct: 121 AYIELV 126

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BLAST of Pay0014811 vs. ExPASy Swiss-Prot
Match: B1XJI3 (50S ribosomal protein L17 OS=Synechococcus sp. (strain ATCC 27264 / PCC 7002 / PR-6) OX=32049 GN=rplQ PE=3 SV=1)

HSP 1 Score: 167.9 bits (424), Expect = 1.2e-40
Identity = 79/116 (68.10%), Postives = 100/116 (86.21%), Query Frame = 0


Query: 93  MRHGKRVPKLNRPPDQRRALLRGLTTQLLKHGRIKTTRTRASAMRKYVDKMITLAKDGSL 152
           MRHG RVP+L RP DQR+ALLR LTTQL++HG++KTT+ RA A+R  VD+MITLAKDGSL
Sbjct: 1   MRHGCRVPELGRPADQRKALLRALTTQLIRHGQVKTTKARAKAVRSEVDRMITLAKDGSL 60

Query: 153 HKRRQALGFIYEKQIVHALFAEVQDRYGERNGGYTRIIRTLPRRGDNAPMAYIELV 209
             RR+ALG++Y+K +VHALFA+ +DRYG+R GGY+R++RT+ RRGDNA MA IELV
Sbjct: 61  AARRRALGYMYDKDLVHALFAQAKDRYGDRQGGYSRVVRTVRRRGDNAEMAIIELV 116

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BLAST of Pay0014811 vs. ExPASy Swiss-Prot
Match: B0C429 (50S ribosomal protein L17 OS=Acaryochloris marina (strain MBIC 11017) OX=329726 GN=rplQ PE=3 SV=1)

HSP 1 Score: 166.8 bits (421), Expect = 2.6e-40
Identity = 82/115 (71.30%), Postives = 97/115 (84.35%), Query Frame = 0


Query: 93  MRHGKRVPKLNRPPDQRRALLRGLTTQLLKHGRIKTTRTRASAMRKYVDKMITLAKDGSL 152
           MRH  RV KL +P DQR+ALLR L+TQL++HGR+ TT+ RA A+R  V+KMITLAKDGSL
Sbjct: 1   MRHRCRVHKLGKPADQRKALLRSLSTQLIRHGRVTTTKARAKAVRSQVEKMITLAKDGSL 60

Query: 153 HKRRQALGFIYEKQIVHALFAEVQDRYGERNGGYTRIIRTLPRRGDNAPMAYIEL 208
             RRQALG+IY+KQ+VHALF +V DRYG+RNGGYTRIIRT+ RRGDNA MA IEL
Sbjct: 61  ASRRQALGYIYDKQLVHALFDQVADRYGDRNGGYTRIIRTIRRRGDNAEMAIIEL 115

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BLAST of Pay0014811 vs. ExPASy TrEMBL
Match: A0A1S3B652 (50S ribosomal protein L17 OS=Cucumis melo OX=3656 GN=LOC103486218 PE=3 SV=1)

HSP 1 Score: 412.9 bits (1060), Expect = 7.8e-112
Identity = 208/208 (100.00%), Postives = 208/208 (100.00%), Query Frame = 0


Query: 1   MAMAITTATANGRWSFTTLRSALPSVGSENCTRTRVSFPLSNARVSRRTCSKPIASFSGL 60
           MAMAITTATANGRWSFTTLRSALPSVGSENCTRTRVSFPLSNARVSRRTCSKPIASFSGL
Sbjct: 1   MAMAITTATANGRWSFTTLRSALPSVGSENCTRTRVSFPLSNARVSRRTCSKPIASFSGL 60

Query: 61  CPLNPLISTGSADYNDFEHNFKIVDNGSRVFAMRHGKRVPKLNRPPDQRRALLRGLTTQL 120
           CPLNPLISTGSADYNDFEHNFKIVDNGSRVFAMRHGKRVPKLNRPPDQRRALLRGLTTQL
Sbjct: 61  CPLNPLISTGSADYNDFEHNFKIVDNGSRVFAMRHGKRVPKLNRPPDQRRALLRGLTTQL 120

Query: 121 LKHGRIKTTRTRASAMRKYVDKMITLAKDGSLHKRRQALGFIYEKQIVHALFAEVQDRYG 180
           LKHGRIKTTRTRASAMRKYVDKMITLAKDGSLHKRRQALGFIYEKQIVHALFAEVQDRYG
Sbjct: 121 LKHGRIKTTRTRASAMRKYVDKMITLAKDGSLHKRRQALGFIYEKQIVHALFAEVQDRYG 180

Query: 181 ERNGGYTRIIRTLPRRGDNAPMAYIELV 209
           ERNGGYTRIIRTLPRRGDNAPMAYIELV
Sbjct: 181 ERNGGYTRIIRTLPRRGDNAPMAYIELV 208

[Close]

BLAST of Pay0014811 vs. ExPASy TrEMBL
Match: A0A0A0L9N9 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G727930 PE=3 SV=1)

HSP 1 Score: 396.7 bits (1018), Expect = 5.8e-107
Identity = 203/210 (96.67%), Postives = 205/210 (97.62%), Query Frame = 0


Query: 1   MAMAIT--TATANGRWSFTTLRSALPSVGSENCTRTRVSFPLSNARVSRRTCSKPIASFS 60
           M+MAIT  TATANGRWSFTTLRSALPSVGSE CTRTRVSFPLSNARVSRRTCSKPIASFS
Sbjct: 1   MSMAITTATATANGRWSFTTLRSALPSVGSEICTRTRVSFPLSNARVSRRTCSKPIASFS 60

Query: 61  GLCPLNPLISTGSADYNDFEHNFKIVDNGSRVFAMRHGKRVPKLNRPPDQRRALLRGLTT 120
           GLCPLNPLISTGSADYN FEHNF+IVDNG RVFAMRHGKRVPKLNRPPDQRRALLRGLTT
Sbjct: 61  GLCPLNPLISTGSADYNGFEHNFEIVDNGYRVFAMRHGKRVPKLNRPPDQRRALLRGLTT 120

Query: 121 QLLKHGRIKTTRTRASAMRKYVDKMITLAKDGSLHKRRQALGFIYEKQIVHALFAEVQDR 180
           QLLKHGRIKTTRTRASAMRKYVDKMITLAKDGSLHKRRQALGFIYEKQIVHALFAEVQDR
Sbjct: 121 QLLKHGRIKTTRTRASAMRKYVDKMITLAKDGSLHKRRQALGFIYEKQIVHALFAEVQDR 180

Query: 181 YGERNGGYTRIIRTLPRRGDNAPMAYIELV 209
           YGERNGGYTRIIRTLPRRGDNAPMAYIELV
Sbjct: 181 YGERNGGYTRIIRTLPRRGDNAPMAYIELV 210

[Close]

BLAST of Pay0014811 vs. ExPASy TrEMBL
Match: A0A6J1DXR7 (50S ribosomal protein L17, chloroplastic OS=Momordica charantia OX=3673 GN=LOC111024059 PE=3 SV=1)

HSP 1 Score: 353.6 bits (906), Expect = 5.6e-94
Identity = 179/208 (86.06%), Postives = 187/208 (89.90%), Query Frame = 0


Query: 1   MAMAITTATANGRWSFTTLRSALPSVGSENCTRTRVSFPLSNARVSRRTCSKPIASFSGL 60
           MAMA TTA  N RWS T LR+ALPSVG E  T  RVSFP +  RVS RTCSKPIASFSGL
Sbjct: 1   MAMAFTTAATNSRWSLTALRAALPSVGVEIHTPARVSFPSATGRVSCRTCSKPIASFSGL 60

Query: 61  CPLNPLISTGSADYNDFEHNFKIVDNGSRVFAMRHGKRVPKLNRPPDQRRALLRGLTTQL 120
           CPLNPLISTG +D++ FEHNF IVD+G R FAMRHGKRVPKLNRPPDQRRALLRGLTTQL
Sbjct: 61  CPLNPLISTGLSDFDSFEHNFTIVDSGCRYFAMRHGKRVPKLNRPPDQRRALLRGLTTQL 120

Query: 121 LKHGRIKTTRTRASAMRKYVDKMITLAKDGSLHKRRQALGFIYEKQIVHALFAEVQDRYG 180
           LKHGRIKTTR RASAMRKYVDKMITLAK+GSLHKRRQALGF+YEKQIVHALFAEVQDRYG
Sbjct: 121 LKHGRIKTTRARASAMRKYVDKMITLAKEGSLHKRRQALGFVYEKQIVHALFAEVQDRYG 180

Query: 181 ERNGGYTRIIRTLPRRGDNAPMAYIELV 209
           ERNGGYTRIIRTLPRRGDNAPMAYIELV
Sbjct: 181 ERNGGYTRIIRTLPRRGDNAPMAYIELV 208

[Close]

BLAST of Pay0014811 vs. ExPASy TrEMBL
Match: A0A6J1I1G7 (50S ribosomal protein L17, chloroplastic OS=Cucurbita maxima OX=3661 GN=LOC111470028 PE=3 SV=1)

HSP 1 Score: 350.9 bits (899), Expect = 3.7e-93
Identity = 182/210 (86.67%), Postives = 191/210 (90.95%), Query Frame = 0


Query: 1   MAMAIT--TATANGRWSFTTLRSALPSVGSENCTRTRVSFPLSNARVSRRTCSKPIASFS 60
           MAMAIT  TATAN RWSF+++RSALPSV     T +RVSFP SN RVS RTCSK IASFS
Sbjct: 1   MAMAITTATATANSRWSFSSMRSALPSVEVGVRTPSRVSFPSSNGRVSGRTCSKQIASFS 60

Query: 61  GLCPLNPLISTGSADYNDFEHNFKIVDNGSRVFAMRHGKRVPKLNRPPDQRRALLRGLTT 120
           GLCPLNPLIS GS+DYN FE NF IVDNG RVFAMRHGKRVPKLNRPPDQRRALLRGLTT
Sbjct: 61  GLCPLNPLISIGSSDYNSFEQNFTIVDNGYRVFAMRHGKRVPKLNRPPDQRRALLRGLTT 120

Query: 121 QLLKHGRIKTTRTRASAMRKYVDKMITLAKDGSLHKRRQALGFIYEKQIVHALFAEVQDR 180
           QLLKHGRIKTTR RASA+RKYVDKMITLAKDGSLHKRRQALGFIYEKQIVHALFAEV+DR
Sbjct: 121 QLLKHGRIKTTRARASAVRKYVDKMITLAKDGSLHKRRQALGFIYEKQIVHALFAEVKDR 180

Query: 181 YGERNGGYTRIIRTLPRRGDNAPMAYIELV 209
           YGERNGGYTRI+RTLPRRGDNAPMA+IELV
Sbjct: 181 YGERNGGYTRILRTLPRRGDNAPMAFIELV 210

[Close]

BLAST of Pay0014811 vs. ExPASy TrEMBL
Match: A0A6J1GDC0 (50S ribosomal protein L17, chloroplastic OS=Cucurbita moschata OX=3662 GN=LOC111452972 PE=3 SV=1)

HSP 1 Score: 347.1 bits (889), Expect = 5.3e-92
Identity = 180/210 (85.71%), Postives = 189/210 (90.00%), Query Frame = 0


Query: 1   MAMAIT--TATANGRWSFTTLRSALPSVGSENCTRTRVSFPLSNARVSRRTCSKPIASFS 60
           MAMAIT  TATAN RWSF+++RSALP V     T +RVSFP SN R S RTCSK IASFS
Sbjct: 1   MAMAITTATATANSRWSFSSMRSALPFVEVGVRTPSRVSFPSSNGRASGRTCSKQIASFS 60

Query: 61  GLCPLNPLISTGSADYNDFEHNFKIVDNGSRVFAMRHGKRVPKLNRPPDQRRALLRGLTT 120
           GLCPLNPLIS GS+DYN FE NF IVDNG RVFAMRHGKRVPKLNRPPDQRRALLRGLTT
Sbjct: 61  GLCPLNPLISIGSSDYNSFEQNFTIVDNGYRVFAMRHGKRVPKLNRPPDQRRALLRGLTT 120

Query: 121 QLLKHGRIKTTRTRASAMRKYVDKMITLAKDGSLHKRRQALGFIYEKQIVHALFAEVQDR 180
           QLLKHGRIKTTR RASA+RKYVDKMITLAKDGSLHKRRQALGFIYEKQIVHALFAEV+DR
Sbjct: 121 QLLKHGRIKTTRARASAVRKYVDKMITLAKDGSLHKRRQALGFIYEKQIVHALFAEVKDR 180

Query: 181 YGERNGGYTRIIRTLPRRGDNAPMAYIELV 209
           YGERNGGYTRI+RTLPRRGDNAPMA+IELV
Sbjct: 181 YGERNGGYTRILRTLPRRGDNAPMAFIELV 210

[Close]

BLAST of Pay0014811 vs. NCBI nr
Match: XP_008442307.1 (PREDICTED: 50S ribosomal protein L17 [Cucumis melo])

HSP 1 Score: 412.9 bits (1060), Expect = 1.6e-111
Identity = 208/208 (100.00%), Postives = 208/208 (100.00%), Query Frame = 0


Query: 1   MAMAITTATANGRWSFTTLRSALPSVGSENCTRTRVSFPLSNARVSRRTCSKPIASFSGL 60
           MAMAITTATANGRWSFTTLRSALPSVGSENCTRTRVSFPLSNARVSRRTCSKPIASFSGL
Sbjct: 1   MAMAITTATANGRWSFTTLRSALPSVGSENCTRTRVSFPLSNARVSRRTCSKPIASFSGL 60

Query: 61  CPLNPLISTGSADYNDFEHNFKIVDNGSRVFAMRHGKRVPKLNRPPDQRRALLRGLTTQL 120
           CPLNPLISTGSADYNDFEHNFKIVDNGSRVFAMRHGKRVPKLNRPPDQRRALLRGLTTQL
Sbjct: 61  CPLNPLISTGSADYNDFEHNFKIVDNGSRVFAMRHGKRVPKLNRPPDQRRALLRGLTTQL 120

Query: 121 LKHGRIKTTRTRASAMRKYVDKMITLAKDGSLHKRRQALGFIYEKQIVHALFAEVQDRYG 180
           LKHGRIKTTRTRASAMRKYVDKMITLAKDGSLHKRRQALGFIYEKQIVHALFAEVQDRYG
Sbjct: 121 LKHGRIKTTRTRASAMRKYVDKMITLAKDGSLHKRRQALGFIYEKQIVHALFAEVQDRYG 180

Query: 181 ERNGGYTRIIRTLPRRGDNAPMAYIELV 209
           ERNGGYTRIIRTLPRRGDNAPMAYIELV
Sbjct: 181 ERNGGYTRIIRTLPRRGDNAPMAYIELV 208

[Close]

BLAST of Pay0014811 vs. NCBI nr
Match: XP_004137669.1 (50S ribosomal protein L17, chloroplastic [Cucumis sativus] >KGN58675.1 hypothetical protein Csa_001558 [Cucumis sativus])

HSP 1 Score: 396.7 bits (1018), Expect = 1.2e-106
Identity = 203/210 (96.67%), Postives = 205/210 (97.62%), Query Frame = 0


Query: 1   MAMAIT--TATANGRWSFTTLRSALPSVGSENCTRTRVSFPLSNARVSRRTCSKPIASFS 60
           M+MAIT  TATANGRWSFTTLRSALPSVGSE CTRTRVSFPLSNARVSRRTCSKPIASFS
Sbjct: 1   MSMAITTATATANGRWSFTTLRSALPSVGSEICTRTRVSFPLSNARVSRRTCSKPIASFS 60

Query: 61  GLCPLNPLISTGSADYNDFEHNFKIVDNGSRVFAMRHGKRVPKLNRPPDQRRALLRGLTT 120
           GLCPLNPLISTGSADYN FEHNF+IVDNG RVFAMRHGKRVPKLNRPPDQRRALLRGLTT
Sbjct: 61  GLCPLNPLISTGSADYNGFEHNFEIVDNGYRVFAMRHGKRVPKLNRPPDQRRALLRGLTT 120

Query: 121 QLLKHGRIKTTRTRASAMRKYVDKMITLAKDGSLHKRRQALGFIYEKQIVHALFAEVQDR 180
           QLLKHGRIKTTRTRASAMRKYVDKMITLAKDGSLHKRRQALGFIYEKQIVHALFAEVQDR
Sbjct: 121 QLLKHGRIKTTRTRASAMRKYVDKMITLAKDGSLHKRRQALGFIYEKQIVHALFAEVQDR 180

Query: 181 YGERNGGYTRIIRTLPRRGDNAPMAYIELV 209
           YGERNGGYTRIIRTLPRRGDNAPMAYIELV
Sbjct: 181 YGERNGGYTRIIRTLPRRGDNAPMAYIELV 210

[Close]

BLAST of Pay0014811 vs. NCBI nr
Match: XP_038906261.1 (50S ribosomal protein L17, chloroplastic [Benincasa hispida])

HSP 1 Score: 386.3 bits (991), Expect = 1.6e-103
Identity = 196/208 (94.23%), Postives = 199/208 (95.67%), Query Frame = 0


Query: 1   MAMAITTATANGRWSFTTLRSALPSVGSENCTRTRVSFPLSNARVSRRTCSKPIASFSGL 60
           MAMAITTATANGRWSFTTLRSALPSV SE CT +RVSFPLSN RV+ RTCSKPIASFSGL
Sbjct: 1   MAMAITTATANGRWSFTTLRSALPSVRSEICTPSRVSFPLSNVRVNSRTCSKPIASFSGL 60

Query: 61  CPLNPLISTGSADYNDFEHNFKIVDNGSRVFAMRHGKRVPKLNRPPDQRRALLRGLTTQL 120
           CPLNPLISTG  DYN FEHNFKIVD+GSR FAMRHGKRVPKLNRPPDQRRALLRGLTTQL
Sbjct: 61  CPLNPLISTGLPDYNGFEHNFKIVDSGSRFFAMRHGKRVPKLNRPPDQRRALLRGLTTQL 120

Query: 121 LKHGRIKTTRTRASAMRKYVDKMITLAKDGSLHKRRQALGFIYEKQIVHALFAEVQDRYG 180
           LKHGRIKTTRTRASAMRKYVDKMITLAKDGSLHKRRQALGFIYEKQIVHALFAEVQDRYG
Sbjct: 121 LKHGRIKTTRTRASAMRKYVDKMITLAKDGSLHKRRQALGFIYEKQIVHALFAEVQDRYG 180

Query: 181 ERNGGYTRIIRTLPRRGDNAPMAYIELV 209
           ERNGGYTRIIRTLPRRGDNAPMAYIELV
Sbjct: 181 ERNGGYTRIIRTLPRRGDNAPMAYIELV 208

[Close]

BLAST of Pay0014811 vs. NCBI nr
Match: XP_022157331.1 (50S ribosomal protein L17, chloroplastic [Momordica charantia])

HSP 1 Score: 353.6 bits (906), Expect = 1.2e-93
Identity = 179/208 (86.06%), Postives = 187/208 (89.90%), Query Frame = 0


Query: 1   MAMAITTATANGRWSFTTLRSALPSVGSENCTRTRVSFPLSNARVSRRTCSKPIASFSGL 60
           MAMA TTA  N RWS T LR+ALPSVG E  T  RVSFP +  RVS RTCSKPIASFSGL
Sbjct: 1   MAMAFTTAATNSRWSLTALRAALPSVGVEIHTPARVSFPSATGRVSCRTCSKPIASFSGL 60

Query: 61  CPLNPLISTGSADYNDFEHNFKIVDNGSRVFAMRHGKRVPKLNRPPDQRRALLRGLTTQL 120
           CPLNPLISTG +D++ FEHNF IVD+G R FAMRHGKRVPKLNRPPDQRRALLRGLTTQL
Sbjct: 61  CPLNPLISTGLSDFDSFEHNFTIVDSGCRYFAMRHGKRVPKLNRPPDQRRALLRGLTTQL 120

Query: 121 LKHGRIKTTRTRASAMRKYVDKMITLAKDGSLHKRRQALGFIYEKQIVHALFAEVQDRYG 180
           LKHGRIKTTR RASAMRKYVDKMITLAK+GSLHKRRQALGF+YEKQIVHALFAEVQDRYG
Sbjct: 121 LKHGRIKTTRARASAMRKYVDKMITLAKEGSLHKRRQALGFVYEKQIVHALFAEVQDRYG 180

Query: 181 ERNGGYTRIIRTLPRRGDNAPMAYIELV 209
           ERNGGYTRIIRTLPRRGDNAPMAYIELV
Sbjct: 181 ERNGGYTRIIRTLPRRGDNAPMAYIELV 208

[Close]

BLAST of Pay0014811 vs. NCBI nr
Match: XP_022971252.1 (50S ribosomal protein L17, chloroplastic [Cucurbita maxima] >KAG7027848.1 50S ribosomal protein L17, chloroplastic [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 350.9 bits (899), Expect = 7.5e-93
Identity = 182/210 (86.67%), Postives = 191/210 (90.95%), Query Frame = 0


Query: 1   MAMAIT--TATANGRWSFTTLRSALPSVGSENCTRTRVSFPLSNARVSRRTCSKPIASFS 60
           MAMAIT  TATAN RWSF+++RSALPSV     T +RVSFP SN RVS RTCSK IASFS
Sbjct: 1   MAMAITTATATANSRWSFSSMRSALPSVEVGVRTPSRVSFPSSNGRVSGRTCSKQIASFS 60

Query: 61  GLCPLNPLISTGSADYNDFEHNFKIVDNGSRVFAMRHGKRVPKLNRPPDQRRALLRGLTT 120
           GLCPLNPLIS GS+DYN FE NF IVDNG RVFAMRHGKRVPKLNRPPDQRRALLRGLTT
Sbjct: 61  GLCPLNPLISIGSSDYNSFEQNFTIVDNGYRVFAMRHGKRVPKLNRPPDQRRALLRGLTT 120

Query: 121 QLLKHGRIKTTRTRASAMRKYVDKMITLAKDGSLHKRRQALGFIYEKQIVHALFAEVQDR 180
           QLLKHGRIKTTR RASA+RKYVDKMITLAKDGSLHKRRQALGFIYEKQIVHALFAEV+DR
Sbjct: 121 QLLKHGRIKTTRARASAVRKYVDKMITLAKDGSLHKRRQALGFIYEKQIVHALFAEVKDR 180

Query: 181 YGERNGGYTRIIRTLPRRGDNAPMAYIELV 209
           YGERNGGYTRI+RTLPRRGDNAPMA+IELV
Sbjct: 181 YGERNGGYTRILRTLPRRGDNAPMAFIELV 210

[Close]

BLAST of Pay0014811 vs. TAIR 10
Match: AT3G54210.1 (Ribosomal protein L17 family protein )

HSP 1 Score: 286.6 bits (732), Expect = 1.6e-77
Identity = 152/212 (71.70%), Postives = 171/212 (80.66%), Query Frame = 0


Query: 1   MAMAITTATANGRWSFTTLRSALPSVGSENCTRTRVSFPLSNAR---VSRRTCSKP-IAS 60
           MAMA  T + +  WS ++L+SALPS  S       +  P S++R     R   S P + S
Sbjct: 7   MAMATPTDSVSRVWSMSSLKSALPSTAS-------LRLPSSSSRRPVTLRLPISSPSLPS 66

Query: 61  FSGLCPLNPLISTGSADYNDFEHNFKIVDNGSRVFAMRHGKRVPKLNRPPDQRRALLRGL 120
           FSGL P+NPL+S G  D+  FE+ FKIVD G R++AMRHG+RVPKLNRPPDQR+ALLRGL
Sbjct: 67  FSGLSPVNPLLSIGLPDWQSFENGFKIVDGGGRIYAMRHGRRVPKLNRPPDQRKALLRGL 126

Query: 121 TTQLLKHGRIKTTRTRASAMRKYVDKMITLAKDGSLHKRRQALGFIYEKQIVHALFAEVQ 180
           TTQLLKHGRIKTTR RASAMRK+VDKMITLAKDGSLHKRRQALG+IYEKQIVHALFAEV 
Sbjct: 127 TTQLLKHGRIKTTRARASAMRKFVDKMITLAKDGSLHKRRQALGYIYEKQIVHALFAEVP 186

Query: 181 DRYGERNGGYTRIIRTLPRRGDNAPMAYIELV 209
           DRYGERNGGYTRIIRTLPRRGDNAPMAYIELV
Sbjct: 187 DRYGERNGGYTRIIRTLPRRGDNAPMAYIELV 211

[Close]

BLAST of Pay0014811 vs. TAIR 10
Match: AT5G09770.1 (Ribosomal protein L17 family protein )

HSP 1 Score: 108.6 bits (270), Expect = 6.1e-24
Identity = 53/108 (49.07%), Postives = 73/108 (67.59%), Query Frame = 0


Query: 101 KLNRPPDQRRALLRGLTTQLLKHGRIKTTRTRASAMRKYVDKMITLAKDGSLHKRRQALG 160
           KL RP   R ++LR + +QL+KH RI+TT T+A  +R+  D MI L K+GSL   R+A G
Sbjct: 6   KLGRPAGHRMSMLRTMVSQLVKHERIETTVTKAKEVRRLADNMIQLGKEGSLSAARRAAG 65

Query: 161 FIYEKQIVHALFAEVQDRYGERNGGYTRIIRTLPRRGDNAPMAYIELV 209
           F+    ++H +F E+  RY +R GGYTR++RT  R GD APMAYIE +
Sbjct: 66  FVRGDDVLHKIFTELAHRYKDRAGGYTRLLRTRIRVGDAAPMAYIEFI 113

[Close]

BLAST of Pay0014811 vs. TAIR 10
Match: AT5G64650.1 (Ribosomal protein L17 family protein )

HSP 1 Score: 106.3 bits (264), Expect = 3.0e-23
Identity = 52/108 (48.15%), Postives = 73/108 (67.59%), Query Frame = 0


Query: 101 KLNRPPDQRRALLRGLTTQLLKHGRIKTTRTRASAMRKYVDKMITLAKDGSLHKRRQALG 160
           KL RP   R ++LR + +QL++H RI+TT T+A  +R+  D MI L K+GSL   R+A G
Sbjct: 6   KLGRPAGHRMSMLRTMVSQLVQHERIETTVTKAKEVRRLADNMIQLGKEGSLAAARRAAG 65

Query: 161 FIYEKQIVHALFAEVQDRYGERNGGYTRIIRTLPRRGDNAPMAYIELV 209
           F+    ++H +F E+  RY +R GGYTR++RT  R GD APMAYIE +
Sbjct: 66  FVRGDDVLHKIFTELAHRYKDRAGGYTRMLRTRIRVGDAAPMAYIEFI 113

The following BLAST results are available for this feature:

BLAST of Pay0014811 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9M385	2.3e-76	71.70	50S ribosomal protein L17, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=RPL1...	[more]
O80363	3.3e-75	71.08	50S ribosomal protein L17, chloroplastic OS=Nicotiana tabacum OX=4097 GN=RPL17 P...	[more]
P82194	1.4e-57	85.71	50S ribosomal protein L17, chloroplastic OS=Spinacia oleracea OX=3562 GN=RPL17 P...	[more]
B1XJI3	1.2e-40	68.10	50S ribosomal protein L17 OS=Synechococcus sp. (strain ATCC 27264 / PCC 7002 / P...	[more]
B0C429	2.6e-40	71.30	50S ribosomal protein L17 OS=Acaryochloris marina (strain MBIC 11017) OX=329726 ...	[more]

BLAST of Pay0014811 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S3B652	7.8e-112	100.00	50S ribosomal protein L17 OS=Cucumis melo OX=3656 GN=LOC103486218 PE=3 SV=1	[more]
A0A0A0L9N9	5.8e-107	96.67	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G727930 PE=3 SV=1	[more]
A0A6J1DXR7	5.6e-94	86.06	50S ribosomal protein L17, chloroplastic OS=Momordica charantia OX=3673 GN=LOC11...	[more]
A0A6J1I1G7	3.7e-93	86.67	50S ribosomal protein L17, chloroplastic OS=Cucurbita maxima OX=3661 GN=LOC11147...	[more]
A0A6J1GDC0	5.3e-92	85.71	50S ribosomal protein L17, chloroplastic OS=Cucurbita moschata OX=3662 GN=LOC111...	[more]

BLAST of Pay0014811 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008442307.1	1.6e-111	100.00	PREDICTED: 50S ribosomal protein L17 [Cucumis melo]	[more]
XP_004137669.1	1.2e-106	96.67	50S ribosomal protein L17, chloroplastic [Cucumis sativus] >KGN58675.1 hypotheti...	[more]
XP_038906261.1	1.6e-103	94.23	50S ribosomal protein L17, chloroplastic [Benincasa hispida]	[more]
XP_022157331.1	1.2e-93	86.06	50S ribosomal protein L17, chloroplastic [Momordica charantia]	[more]
XP_022971252.1	7.5e-93	86.67	50S ribosomal protein L17, chloroplastic [Cucurbita maxima] >KAG7027848.1 50S ri...	[more]

BLAST of Pay0014811 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G54210.1	1.6e-77	71.70	Ribosomal protein L17 family protein	[more]
AT5G09770.1	6.1e-24	49.07	Ribosomal protein L17 family protein	[more]
AT5G64650.1	3.0e-23	48.15	Ribosomal protein L17 family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (Payzawat) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR036373	Ribosomal protein L17 superfamily	GENE3D	3.90.1030.10	Ribosomal protein L17	coord: 83..208 e-value: 1.4E-50 score: 172.5
IPR036373	Ribosomal protein L17 superfamily	SUPERFAMILY	64263	Prokaryotic ribosomal protein L17	coord: 93..208
IPR000456	Ribosomal protein L17	PFAM	PF01196	Ribosomal_L17	coord: 112..208 e-value: 1.7E-34 score: 118.7
IPR000456	Ribosomal protein L17	TIGRFAM	TIGR00059	TIGR00059	coord: 99..208 e-value: 7.8E-43 score: 143.3
IPR000456	Ribosomal protein L17	PANTHER	PTHR14413	RIBOSOMAL PROTEIN L17	coord: 44..208
IPR000456	Ribosomal protein L17	HAMAP	MF_01368	Ribosomal_L17	coord: 97..208 score: 26.132162
None	No IPR available	PANTHER	PTHR14413:SF23	SUBFAMILY NOT NAMED	coord: 44..208

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Pay0014811.1	Pay0014811.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006412	translation
cellular_component	GO:0022625	cytosolic large ribosomal subunit
cellular_component	GO:0005840	ribosome
molecular_function	GO:0003735	structural constituent of ribosome