Pay0014633 (gene) Melon (Payzawat) v1

Overview


Name	Pay0014633
Type	gene
Organism	Cucumis melo L. var. inodorus cv. Payzawat (Melon (Payzawat) v1)
Description	NADH-ubiquinone reductase complex 1 MLRQ subunit
Location	chr03: 29725261 .. 29726676 (+)
RNA-Seq Expression	Pay0014633
Synteny	Pay0014633

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GGGGTTAGAATTCATCTTTTCCTTTTAATTTACAATGTAATAAAAATAAAATTCTTTTCAAACATTGGTCAAATTTACCATCCTTGTGCCTAAAATAAAGGGTTATTGTTTAGGTTTGAAAAAAAGGTGTGAAAGGCAGAAAAAGAAGAGTAAAAAAGGAATACTAAGGCAATGAGACGCCAAATAAGGAAGGAAATAAGTTGGCAAACTTAAGACGCCAATGGTTATGGTTGCGGTTGTGGCTGCCCCTAATTTATGATCCTTCCTTTTCTCAACCTTTCTTTTTTTTCTTTCCCTTTCCTTATAAATTTCCACATCAAAACATTCCCTCCGCCGCTGCACCTTTCTGAATCCTTCTTCCCAACAATAACAACACCCGTTCTTTTCTCTATATTCCCATGGCTACCGCCAACAGATGGTTAAAGCCCGAGGTTTTTTTTTTTTTTTTTTCCCTTTTCCTTTTCTATAACTTTCTGTTTGGCTGCTGAGAAAAAACATGAAGAAAATAAGAAGTTTATCATTCAAAACTTGATAAATTCCTTGAATATATATGTTTGCAGGTGTATCCTCTCTTTGCTTCTGTTGGTGTGGCTGTTGGTATCTGTGTGATGCAGCTTGTTAGAAACATAACCACCAATCCTGAAGTCAGGTAAATATTTCCAAGTTCTAGGGAGAAAATATATATATATATATATATATATATATATATATGATGTTCAATATAATGGAAATGTAAATATTGCGATCAAGAGAAGAGAAGAAAAGTGGTGTCCTGATTTGTTCTGAATGGAACATGACAGGGTTATCAAAGAGAGGAGAGCTGCTGGAGTGCTTGATAACTTTGAAGAAGGTGAGAAGTATGCAGAGCATGGACTTAGGAAGTTCCTCAGAACAAGACCTCCTCAGATTATGCCTTCCATCAACAAATTCTTCTCAGATCCAAACTAAATCAAATTCTGTTACTCACCTTTGAAATTAGTTGTAGATCGCCTGATGTATTTGTTGTCGATGTGTAAGTCGAGTCTTTTCAAATAATGAAGTGCTATTTAAACTGATGGTATATAGGCTTCTTCTGTTATGGCTGGAAGAAAAACAAATGAAGCACTACTCATATAGCATATCTGAGATGTAAGCTCAACTTTTTCTAAATCATGGAACGATCTGTCCTTATTTTTGAGAAGGAAAGTGTGTCCTCGAACTTCTTTCATCTGAGAAAAATAGTGAACGTTCAAGATTTCAAACATCTGAATGTTGAGGGGATCTAAATTCCTTGCAAACAGTCTCTCAAAGATAAATAAGCACCTTACCCAAACGGCTGTTTCACCAGGCTAACATAATGATCCGCTAATAAGCTGTTAGTTCCAAAGATAAGTACTCAAATGCAATACGGAAAAAGTAAGAAACTGCTGATTCACT

mRNA sequence

GGGGTTAGAATTCATCTTTTCCTTTTAATTTACAATGTAATAAAAATAAAATTCTTTTCAAACATTGGTCAAATTTACCATCCTTGTGCCTAAAATAAAGGGTTATTGTTTAGGTTTGAAAAAAAGGTGTGAAAGGCAGAAAAAGAAGAGTAAAAAAGGAATACTAAGGCAATGAGACGCCAAATAAGGAAGGAAATAAGTTGGCAAACTTAAGACGCCAATGGTTATGGTTGCGGTTGTGGCTGCCCCTAATTTATGATCCTTCCTTTTCTCAACCTTTCTTTTTTTTCTTTCCCTTTCCTTATAAATTTCCACATCAAAACATTCCCTCCGCCGCTGCACCTTTCTGAATCCTTCTTCCCAACAATAACAACACCCGTTCTTTTCTCTATATTCCCATGGCTACCGCCAACAGATGGTTAAAGCCCGAGGTGTATCCTCTCTTTGCTTCTGTTGGTGTGGCTGTTGGTATCTGTGTGATGCAGCTTGTTAGAAACATAACCACCAATCCTGAAGTCAGGGTTATCAAAGAGAGGAGAGCTGCTGGAGTGCTTGATAACTTTGAAGAAGGTGAGAAGTATGCAGAGCATGGACTTAGGAAGTTCCTCAGAACAAGACCTCCTCAGATTATGCCTTCCATCAACAAATTCTTCTCAGATCCAAACTAAATCAAATTCTGTTACTCACCTTTGAAATTAGTTGTAGATCGCCTGATGTATTTGTTGTCGATGTGTAAGTCGAGTCTTTTCAAATAATGAAGTGCTATTTAAACTGATGGTATATAGGCTTCTTCTGTTATGGCTGGAAGAAAAACAAATGAAGCACTACTCATATAGCATATCTGAGATGTAAGCTCAACTTTTTCTAAATCATGGAACGATCTGTCCTTATTTTTGAGAAGGAAAGTGTGTCCTCGAACTTCTTTCATCTGAGAAAAATAGTGAACGTTCAAGATTTCAAACATCTGAATGTTGAGGGGATCTAAATTCCTTGCAAACAGTCTCTCAAAGATAAATAAGCACCTTACCCAAACGGCTGTTTCACCAGGCTAACATAATGATCCGCTAATAAGCTGTTAGTTCCAAAGATAAGTACTCAAATGCAATACGGAAAAAGTAAGAAACTGCTGATTCACT

Coding sequence (CDS)

ATGGCTACCGCCAACAGATGGTTAAAGCCCGAGGTGTATCCTCTCTTTGCTTCTGTTGGTGTGGCTGTTGGTATCTGTGTGATGCAGCTTGTTAGAAACATAACCACCAATCCTGAAGTCAGGGTTATCAAAGAGAGGAGAGCTGCTGGAGTGCTTGATAACTTTGAAGAAGGTGAGAAGTATGCAGAGCATGGACTTAGGAAGTTCCTCAGAACAAGACCTCCTCAGATTATGCCTTCCATCAACAAATTCTTCTCAGATCCAAACTAA

Protein sequence

MATANRWLKPEVYPLFASVGVAVGICVMQLVRNITTNPEVRVIKERRAAGVLDNFEEGEKYAEHGLRKFLRTRPPQIMPSINKFFSDPN

Homology

[Close]

BLAST of Pay0014633 vs. ExPASy TrEMBL
Match: A0A1S4DVM4 (uncharacterized protein LOC107990723 OS=Cucumis melo OX=3656 GN=LOC107990723 PE=4 SV=1)

HSP 1 Score: 184.5 bits (467), Expect = 1.9e-43
Identity = 89/89 (100.00%), Postives = 89/89 (100.00%), Query Frame = 0


Query: 1  MATANRWLKPEVYPLFASVGVAVGICVMQLVRNITTNPEVRVIKERRAAGVLDNFEEGEK 60
          MATANRWLKPEVYPLFASVGVAVGICVMQLVRNITTNPEVRVIKERRAAGVLDNFEEGEK
Sbjct: 1  MATANRWLKPEVYPLFASVGVAVGICVMQLVRNITTNPEVRVIKERRAAGVLDNFEEGEK 60

Query: 61 YAEHGLRKFLRTRPPQIMPSINKFFSDPN 90
          YAEHGLRKFLRTRPPQIMPSINKFFSDPN
Sbjct: 61 YAEHGLRKFLRTRPPQIMPSINKFFSDPN 89

[Close]

BLAST of Pay0014633 vs. ExPASy TrEMBL
Match: A0A0A0LMX7 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G350420 PE=4 SV=1)

HSP 1 Score: 183.0 bits (463), Expect = 5.6e-43
Identity = 88/89 (98.88%), Postives = 88/89 (98.88%), Query Frame = 0


Query: 1  MATANRWLKPEVYPLFASVGVAVGICVMQLVRNITTNPEVRVIKERRAAGVLDNFEEGEK 60
          MATANRWLKPEVYPLFASVGVAVGIC MQLVRNITTNPEVRVIKERRAAGVLDNFEEGEK
Sbjct: 1  MATANRWLKPEVYPLFASVGVAVGICAMQLVRNITTNPEVRVIKERRAAGVLDNFEEGEK 60

Query: 61 YAEHGLRKFLRTRPPQIMPSINKFFSDPN 90
          YAEHGLRKFLRTRPPQIMPSINKFFSDPN
Sbjct: 61 YAEHGLRKFLRTRPPQIMPSINKFFSDPN 89

[Close]

BLAST of Pay0014633 vs. ExPASy TrEMBL
Match: A0A6J1HDB5 (uncharacterized protein LOC111462563 OS=Cucurbita moschata OX=3662 GN=LOC111462563 PE=4 SV=1)

HSP 1 Score: 178.7 bits (452), Expect = 1.1e-41
Identity = 86/89 (96.63%), Postives = 87/89 (97.75%), Query Frame = 0


Query: 1  MATANRWLKPEVYPLFASVGVAVGICVMQLVRNITTNPEVRVIKERRAAGVLDNFEEGEK 60
          MATANRWLKPEVYPLFA+VGVAVGIC MQLVRNITTNPEVRV KERRAAGVLDNFEEGEK
Sbjct: 1  MATANRWLKPEVYPLFATVGVAVGICGMQLVRNITTNPEVRVTKERRAAGVLDNFEEGEK 60

Query: 61 YAEHGLRKFLRTRPPQIMPSINKFFSDPN 90
          YAEHGLRKFLRTRPPQIMPSINKFFSDPN
Sbjct: 61 YAEHGLRKFLRTRPPQIMPSINKFFSDPN 89

[Close]

BLAST of Pay0014633 vs. ExPASy TrEMBL
Match: A0A6J1BUB6 (uncharacterized protein LOC111004829 OS=Momordica charantia OX=3673 GN=LOC111004829 PE=4 SV=1)

HSP 1 Score: 172.9 bits (437), Expect = 5.8e-40
Identity = 83/89 (93.26%), Postives = 85/89 (95.51%), Query Frame = 0


Query: 1  MATANRWLKPEVYPLFASVGVAVGICVMQLVRNITTNPEVRVIKERRAAGVLDNFEEGEK 60
          MA  NRWLKPEVYPLFA+VGVAVGIC MQLVRNITTNPEVRVIKE+RAAGVLDNFEEGEK
Sbjct: 1  MAATNRWLKPEVYPLFAAVGVAVGICGMQLVRNITTNPEVRVIKEKRAAGVLDNFEEGEK 60

Query: 61 YAEHGLRKFLRTRPPQIMPSINKFFSDPN 90
          YAEHGLRKFLRTR PQIMPSINKFFSDPN
Sbjct: 61 YAEHGLRKFLRTRSPQIMPSINKFFSDPN 89

[Close]

BLAST of Pay0014633 vs. ExPASy TrEMBL
Match: A0A6A2Z9I1 (Mitotic spindle checkpoint protein MAD2-like OS=Hibiscus syriacus OX=106335 GN=F3Y22_tig00110988pilonHSYRG00463 PE=4 SV=1)

HSP 1 Score: 167.5 bits (423), Expect = 2.4e-38
Identity = 77/89 (86.52%), Postives = 84/89 (94.38%), Query Frame = 0


Query: 1  MATANRWLKPEVYPLFASVGVAVGICVMQLVRNITTNPEVRVIKERRAAGVLDNFEEGEK 60
          MA+ANRWL+PEVYPLFASV VAVGIC MQLVRNITTNPEVRV KE+RAAG+L+NFEEGEK
Sbjct: 1  MASANRWLRPEVYPLFASVSVAVGICAMQLVRNITTNPEVRVTKEKRAAGILENFEEGEK 60

Query: 61 YAEHGLRKFLRTRPPQIMPSINKFFSDPN 90
          YAEHGLRKF+R RPPQIMPS+N FFSDPN
Sbjct: 61 YAEHGLRKFIRKRPPQIMPSVNNFFSDPN 89

[Close]

BLAST of Pay0014633 vs. NCBI nr
Match: XP_016900034.1 (PREDICTED: uncharacterized protein LOC107990723 [Cucumis melo])

HSP 1 Score: 184.5 bits (467), Expect = 4.0e-43
Identity = 89/89 (100.00%), Postives = 89/89 (100.00%), Query Frame = 0


Query: 1  MATANRWLKPEVYPLFASVGVAVGICVMQLVRNITTNPEVRVIKERRAAGVLDNFEEGEK 60
          MATANRWLKPEVYPLFASVGVAVGICVMQLVRNITTNPEVRVIKERRAAGVLDNFEEGEK
Sbjct: 1  MATANRWLKPEVYPLFASVGVAVGICVMQLVRNITTNPEVRVIKERRAAGVLDNFEEGEK 60

Query: 61 YAEHGLRKFLRTRPPQIMPSINKFFSDPN 90
          YAEHGLRKFLRTRPPQIMPSINKFFSDPN
Sbjct: 61 YAEHGLRKFLRTRPPQIMPSINKFFSDPN 89

[Close]

BLAST of Pay0014633 vs. NCBI nr
Match: XP_004142944.1 (uncharacterized protein LOC101222643 [Cucumis sativus] >KGN62359.1 hypothetical protein Csa_018775 [Cucumis sativus])

HSP 1 Score: 183.0 bits (463), Expect = 1.2e-42
Identity = 88/89 (98.88%), Postives = 88/89 (98.88%), Query Frame = 0


Query: 1  MATANRWLKPEVYPLFASVGVAVGICVMQLVRNITTNPEVRVIKERRAAGVLDNFEEGEK 60
          MATANRWLKPEVYPLFASVGVAVGIC MQLVRNITTNPEVRVIKERRAAGVLDNFEEGEK
Sbjct: 1  MATANRWLKPEVYPLFASVGVAVGICAMQLVRNITTNPEVRVIKERRAAGVLDNFEEGEK 60

Query: 61 YAEHGLRKFLRTRPPQIMPSINKFFSDPN 90
          YAEHGLRKFLRTRPPQIMPSINKFFSDPN
Sbjct: 61 YAEHGLRKFLRTRPPQIMPSINKFFSDPN 89

[Close]

BLAST of Pay0014633 vs. NCBI nr
Match: XP_022961943.1 (uncharacterized protein LOC111462563 [Cucurbita moschata])

HSP 1 Score: 178.7 bits (452), Expect = 2.2e-41
Identity = 86/89 (96.63%), Postives = 87/89 (97.75%), Query Frame = 0


Query: 1  MATANRWLKPEVYPLFASVGVAVGICVMQLVRNITTNPEVRVIKERRAAGVLDNFEEGEK 60
          MATANRWLKPEVYPLFA+VGVAVGIC MQLVRNITTNPEVRV KERRAAGVLDNFEEGEK
Sbjct: 1  MATANRWLKPEVYPLFATVGVAVGICGMQLVRNITTNPEVRVTKERRAAGVLDNFEEGEK 60

Query: 61 YAEHGLRKFLRTRPPQIMPSINKFFSDPN 90
          YAEHGLRKFLRTRPPQIMPSINKFFSDPN
Sbjct: 61 YAEHGLRKFLRTRPPQIMPSINKFFSDPN 89

[Close]

BLAST of Pay0014633 vs. NCBI nr
Match: XP_023545968.1 (uncharacterized protein LOC111805233 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 177.6 bits (449), Expect = 4.9e-41
Identity = 85/89 (95.51%), Postives = 87/89 (97.75%), Query Frame = 0


Query: 1  MATANRWLKPEVYPLFASVGVAVGICVMQLVRNITTNPEVRVIKERRAAGVLDNFEEGEK 60
          MATANRWLKPEVYPLFA+VGVAVGIC MQLVRNITTNPEVRV K+RRAAGVLDNFEEGEK
Sbjct: 1  MATANRWLKPEVYPLFATVGVAVGICGMQLVRNITTNPEVRVTKQRRAAGVLDNFEEGEK 60

Query: 61 YAEHGLRKFLRTRPPQIMPSINKFFSDPN 90
          YAEHGLRKFLRTRPPQIMPSINKFFSDPN
Sbjct: 61 YAEHGLRKFLRTRPPQIMPSINKFFSDPN 89

[Close]

BLAST of Pay0014633 vs. NCBI nr
Match: KAG6598267.1 (hypothetical protein SDJN03_08045, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 176.8 bits (447), Expect = 8.3e-41
Identity = 85/89 (95.51%), Postives = 86/89 (96.63%), Query Frame = 0


Query: 1  MATANRWLKPEVYPLFASVGVAVGICVMQLVRNITTNPEVRVIKERRAAGVLDNFEEGEK 60
          M TANRWLKPEVYPLFA+VGVAVGIC MQLVRNITTNPEVRV KERRAAGVLDNFEEGEK
Sbjct: 1  MPTANRWLKPEVYPLFATVGVAVGICGMQLVRNITTNPEVRVTKERRAAGVLDNFEEGEK 60

Query: 61 YAEHGLRKFLRTRPPQIMPSINKFFSDPN 90
          YAEHGLRKFLRTRPPQIMPSINKFFSDPN
Sbjct: 61 YAEHGLRKFLRTRPPQIMPSINKFFSDPN 89

[Close]

BLAST of Pay0014633 vs. TAIR 10
Match: AT3G48140.1 (B12D protein )

HSP 1 Score: 131.3 bits (329), Expect = 3.7e-31
Identity = 59/85 (69.41%), Postives = 70/85 (82.35%), Query Frame = 0


Query: 4  ANRWLKPEVYPLFASVGVAVGICVMQLVRNITTNPEVRVIKERRAAGVLDNFEEGEKYAE 63
          A+RWL+PEVYPLFA+ GVAVGIC   L+RNIT NPEVR  KE RAAG+LDN  EGEKY E
Sbjct: 2  ASRWLRPEVYPLFAATGVAVGICAFSLIRNITGNPEVRCTKENRAAGILDNHAEGEKYKE 61

Query: 64 HGLRKFLRTRPPQIMPSINKFFSDP 89
          + LRKF+R + P+IMP +NKFF+DP
Sbjct: 62 NFLRKFVRNKKPEIMPGLNKFFTDP 86

[Close]

BLAST of Pay0014633 vs. TAIR 10
Match: AT3G29970.1 (B12D protein )

HSP 1 Score: 106.3 bits (264), Expect = 1.3e-23
Identity = 45/81 (55.56%), Postives = 60/81 (74.07%), Query Frame = 0


Query: 6  RWLKPEVYPLFASVGVAVGICVMQLVRNITTNPEVRVIKERRAAGVLDNFEEGEKYAEHG 65
          RW++PEVYPL  ++G    + V QL RN   NP+ R+ KE R  G+L+N +EGEKYA+H 
Sbjct: 3  RWVRPEVYPLLGAMGFVTSMVVFQLTRNAFLNPDCRINKEHRKMGILENKDEGEKYAQHN 62

Query: 66 LRKFLRTRPPQIMPSINKFFS 87
           RK+LRTR PQ+MPS+N+FFS
Sbjct: 63 FRKYLRTRQPQVMPSLNRFFS 83

The following BLAST results are available for this feature:

BLAST of Pay0014633 vs.


Match Name	E-value	Identity	Description

BLAST of Pay0014633 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S4DVM4	1.9e-43	100.00	uncharacterized protein LOC107990723 OS=Cucumis melo OX=3656 GN=LOC107990723 PE=...	[more]
A0A0A0LMX7	5.6e-43	98.88	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G350420 PE=4 SV=1	[more]
A0A6J1HDB5	1.1e-41	96.63	uncharacterized protein LOC111462563 OS=Cucurbita moschata OX=3662 GN=LOC1114625...	[more]
A0A6J1BUB6	5.8e-40	93.26	uncharacterized protein LOC111004829 OS=Momordica charantia OX=3673 GN=LOC111004...	[more]
A0A6A2Z9I1	2.4e-38	86.52	Mitotic spindle checkpoint protein MAD2-like OS=Hibiscus syriacus OX=106335 GN=F...	[more]

BLAST of Pay0014633 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_016900034.1	4.0e-43	100.00	PREDICTED: uncharacterized protein LOC107990723 [Cucumis melo]	[more]
XP_004142944.1	1.2e-42	98.88	uncharacterized protein LOC101222643 [Cucumis sativus] >KGN62359.1 hypothetical ...	[more]
XP_022961943.1	2.2e-41	96.63	uncharacterized protein LOC111462563 [Cucurbita moschata]	[more]
XP_023545968.1	4.9e-41	95.51	uncharacterized protein LOC111805233 [Cucurbita pepo subsp. pepo]	[more]
KAG6598267.1	8.3e-41	95.51	hypothetical protein SDJN03_08045, partial [Cucurbita argyrosperma subsp. sorori...	[more]

BLAST of Pay0014633 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G48140.1	3.7e-31	69.41	B12D protein	[more]
AT3G29970.1	1.3e-23	55.56	B12D protein	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (Payzawat) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR010530	NADH-ubiquinone reductase complex 1 MLRQ subunit	PFAM	PF06522	B12D	coord: 9..76 e-value: 1.2E-24 score: 85.9
None	No IPR available	PANTHER	PTHR33417:SF13	OS07G0274700 PROTEIN	coord: 1..88
None	No IPR available	PANTHER	PTHR33417	G-BOX BINDING PROTEIN	coord: 1..88

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Pay0014633.1	Pay0014633.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane