Pay0014630 (gene) Melon (Payzawat) v1

Overview


Name	Pay0014630
Type	gene
Organism	Cucumis melo L. var. inodorus cv. Payzawat (Melon (Payzawat) v1)
Description	Dof zinc finger protein DOF5.3-like
Location	chr12: 5642421 .. 5642741 (-)
RNA-Seq Expression	Pay0014630
Synteny	Pay0014630

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexonpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATCACGATCATATCTCATCATCATCATCATCATAATCAGCAATACAGCAATGCTACAACAACAGCAGTAACAGTGACGACGATGAAGCAAGAGCTATTTGGAGGACGAGAAATCAACGGAGGTGACCAAAGTAAAATCCTTTGGGGATACCCAAATTGGCAAATGAACAATAACAATAACAACGTAATAGATTCAAACACAACGACAACGACGATGATGGCAGCAATGGATTTCGATTCGGGTTCAGCTCGAGAAAGTTGGAACAACAATGCCTTCACTAATACTTGCTTCTTGCATGGCCTTTCAATATCTCTCATGTAA

mRNA sequence

ATCACGATCATATCTCATCATCATCATCATCATAATCAGCAATACAGCAATGCTACAACAACAGCAGTAACAGTGACGACGATGAAGCAAGAGCTATTTGGAGGACGAGAAATCAACGGAGGTGACCAAAGTAAAATCCTTTGGGGATACCCAAATTGGCAAATGAACAATAACAATAACAACGTAATAGATTCAAACACAACGACAACGACGATGATGGCAGCAATGGATTTCGATTCGGGTTCAGCTCGAGAAAGTTGGAACAACAATGCCTTCACTAATACTTGCTTCTTGCATGGCCTTTCAATATCTCTCATGTAA

Coding sequence (CDS)

ATCACGATCATATCTCATCATCATCATCATCATAATCAGCAATACAGCAATGCTACAACAACAGCAGTAACAGTGACGACGATGAAGCAAGAGCTATTTGGAGGACGAGAAATCAACGGAGGTGACCAAAGTAAAATCCTTTGGGGATACCCAAATTGGCAAATGAACAATAACAATAACAACGTAATAGATTCAAACACAACGACAACGACGATGATGGCAGCAATGGATTTCGATTCGGGTTCAGCTCGAGAAAGTTGGAACAACAATGCCTTCACTAATACTTGCTTCTTGCATGGCCTTTCAATATCTCTCATGTAA

Protein sequence

ITIISHHHHHHNQQYSNATTTAVTVTTMKQELFGGREINGGDQSKILWGYPNWQMNNNNNNVIDSNTTTTTMMAAMDFDSGSARESWNNNAFTNTCFLHGLSISLM

Homology

[Close]

BLAST of Pay0014630 vs. ExPASy TrEMBL
Match: A0A5D3CM87 (Dof zinc finger protein DOF5.3-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold769G00570 PE=4 SV=1)

HSP 1 Score: 194.1 bits (492), Expect = 2.9e-46
Identity = 93/96 (96.88%), Postives = 93/96 (96.88%), Query Frame = 0


Query: 6   HHHHHHNQQYSNATTTAVTVTTMKQELFGGREINGGDQSKILWGYPNWQMNNNNNNVIDS 65
           HHHHHHNQQYSNATTTAVTVTTMKQELFGGREINGGDQSKILWGYPNWQMNNNNNNVIDS
Sbjct: 191 HHHHHHNQQYSNATTTAVTVTTMKQELFGGREINGGDQSKILWGYPNWQMNNNNNNVIDS 250

Query: 66  NTTTTTMMAAMDFDSGSARESWNNNAFTNTCFLHGL 102
           NTTTTTMMAAMDFDSGSARESWNNNAFTNT   HGL
Sbjct: 251 NTTTTTMMAAMDFDSGSARESWNNNAFTNTSSWHGL 286

[Close]

BLAST of Pay0014630 vs. ExPASy TrEMBL
Match: A0A0A0LSJ8 (Dof-type domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_1G089510 PE=4 SV=1)

HSP 1 Score: 180.6 bits (457), Expect = 3.3e-42
Identity = 88/97 (90.72%), Postives = 90/97 (92.78%), Query Frame = 0


Query: 6   HHHHHHNQQYSNATTTAVTVTTMKQELFGGREI-NGGDQSKILWGYPNWQMNNNNNNVID 65
           HHHHHHNQQYSNATTTAVTVTTMKQELFGGRE+ NG DQSKILWGYPNWQMNNNNNNVID
Sbjct: 210 HHHHHHNQQYSNATTTAVTVTTMKQELFGGREMNNGSDQSKILWGYPNWQMNNNNNNVID 269

Query: 66  SNTTTTTMMAAMDFDSGSARESWNNNAFTNTCFLHGL 102
           SNTTTTTMM AMDFDSGSARESWN+NAFTN    HGL
Sbjct: 270 SNTTTTTMMGAMDFDSGSARESWNSNAFTNASSWHGL 306

[Close]

BLAST of Pay0014630 vs. ExPASy TrEMBL
Match: A0A6J1I2W0 (dof zinc finger protein DOF2.1-like OS=Cucurbita maxima OX=3661 GN=LOC111469422 PE=4 SV=1)

HSP 1 Score: 91.3 bits (225), Expect = 2.7e-15
Identity = 50/84 (59.52%), Postives = 59/84 (70.24%), Query Frame = 0


Query: 9   HHHNQQYSNATT--TAVTVTTMKQELFGGREINGGDQSKILWGYPNWQMNNNNNNVIDSN 68
           H ++ QY NATT  TA TVTT KQE+ GG    GG++S++LWGYPNWQMNNN+    DSN
Sbjct: 181 HSYDHQYGNATTTATATTVTTTKQEVLGG----GGEESRMLWGYPNWQMNNNST---DSN 240

Query: 69  TTTTTMMAAMDFDSGSARESWNNN 91
                 M  MDFDSG+ RESWNNN
Sbjct: 241 ------MMGMDFDSGAVRESWNNN 251

[Close]

BLAST of Pay0014630 vs. ExPASy TrEMBL
Match: A0A6J1HLW7 (dof zinc finger protein DOF2.1-like OS=Cucurbita moschata OX=3662 GN=LOC111464805 PE=4 SV=1)

HSP 1 Score: 89.4 bits (220), Expect = 1.0e-14
Identity = 49/84 (58.33%), Postives = 57/84 (67.86%), Query Frame = 0


Query: 9   HHHNQQYSNATT--TAVTVTTMKQELFGGREINGGDQSKILWGYPNWQMNNNNNNVIDSN 68
           H ++ QY N TT  TA TVTT KQE+ GG    GG++S++LWGYPNWQMNNN+    DSN
Sbjct: 184 HSYDHQYGNVTTTATATTVTTTKQEVLGGG--GGGEESRMLWGYPNWQMNNNST---DSN 243

Query: 69  TTTTTMMAAMDFDSGSARESWNNN 91
                 M  MDFDSG  RESWNNN
Sbjct: 244 ------MMGMDFDSGGVRESWNNN 256

[Close]

BLAST of Pay0014630 vs. ExPASy TrEMBL
Match: A0A2N9FRI5 (Dof-type domain-containing protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS17715 PE=4 SV=1)

HSP 1 Score: 64.3 bits (155), Expect = 3.5e-07
Identity = 40/82 (48.78%), Postives = 50/82 (60.98%), Query Frame = 0


Query: 10  HHNQQYSNATTTAVTVTTMKQELFGGREINGGDQSKILWGYPNWQMNNNNNNVIDSNTTT 69
           + + Q SNATTTAVTVTTMKQEL  GRE    + +++LWG+P WQ+NN + N+       
Sbjct: 210 YEDHQMSNATTTAVTVTTMKQELCNGRE----NDNRVLWGFP-WQLNNGDGNM------- 269

Query: 70  TTMMAAMDFDSGSARESWNNNA 92
                  D DSG  RESWN  A
Sbjct: 270 ------GDIDSG--RESWNGLA 271

[Close]

BLAST of Pay0014630 vs. NCBI nr
Match: KAA0051913.1 (dof zinc finger protein DOF5.3-like [Cucumis melo var. makuwa] >TYK12248.1 dof zinc finger protein DOF5.3-like [Cucumis melo var. makuwa])

HSP 1 Score: 194.1 bits (492), Expect = 6.0e-46
Identity = 93/96 (96.88%), Postives = 93/96 (96.88%), Query Frame = 0


Query: 6   HHHHHHNQQYSNATTTAVTVTTMKQELFGGREINGGDQSKILWGYPNWQMNNNNNNVIDS 65
           HHHHHHNQQYSNATTTAVTVTTMKQELFGGREINGGDQSKILWGYPNWQMNNNNNNVIDS
Sbjct: 191 HHHHHHNQQYSNATTTAVTVTTMKQELFGGREINGGDQSKILWGYPNWQMNNNNNNVIDS 250

Query: 66  NTTTTTMMAAMDFDSGSARESWNNNAFTNTCFLHGL 102
           NTTTTTMMAAMDFDSGSARESWNNNAFTNT   HGL
Sbjct: 251 NTTTTTMMAAMDFDSGSARESWNNNAFTNTSSWHGL 286

[Close]

BLAST of Pay0014630 vs. NCBI nr
Match: XP_004147273.1 (dof zinc finger protein DOF2.1 [Cucumis sativus] >KGN64763.1 hypothetical protein Csa_014088 [Cucumis sativus])

HSP 1 Score: 180.6 bits (457), Expect = 6.9e-42
Identity = 88/97 (90.72%), Postives = 90/97 (92.78%), Query Frame = 0


Query: 6   HHHHHHNQQYSNATTTAVTVTTMKQELFGGREI-NGGDQSKILWGYPNWQMNNNNNNVID 65
           HHHHHHNQQYSNATTTAVTVTTMKQELFGGRE+ NG DQSKILWGYPNWQMNNNNNNVID
Sbjct: 210 HHHHHHNQQYSNATTTAVTVTTMKQELFGGREMNNGSDQSKILWGYPNWQMNNNNNNVID 269

Query: 66  SNTTTTTMMAAMDFDSGSARESWNNNAFTNTCFLHGL 102
           SNTTTTTMM AMDFDSGSARESWN+NAFTN    HGL
Sbjct: 270 SNTTTTTMMGAMDFDSGSARESWNSNAFTNASSWHGL 306

[Close]

BLAST of Pay0014630 vs. NCBI nr
Match: XP_038893883.1 (dof zinc finger protein DOF5.3-like [Benincasa hispida])

HSP 1 Score: 169.9 bits (429), Expect = 1.2e-38
Identity = 84/94 (89.36%), Postives = 84/94 (89.36%), Query Frame = 0


Query: 8   HHHHNQQYSNATTTAVTVTTMKQELFGGREINGGDQSKILWGYPNWQMNNNNNNVIDSNT 67
           HHHHNQQYSNATTTAVTVTTMKQELFGGREINGGDQSKILW YPNWQM NN  N IDSNT
Sbjct: 209 HHHHNQQYSNATTTAVTVTTMKQELFGGREINGGDQSKILWAYPNWQM-NNYTNAIDSNT 268

Query: 68  TTTTMMAAMDFDSGSARESWNNNAFTNTCFLHGL 102
           TTTTMM AMDFDSGSARESWNNNAFTN    HGL
Sbjct: 269 TTTTMMTAMDFDSGSARESWNNNAFTNASSWHGL 301

[Close]

BLAST of Pay0014630 vs. NCBI nr
Match: XP_022970445.1 (dof zinc finger protein DOF2.1-like [Cucurbita maxima])

HSP 1 Score: 91.3 bits (225), Expect = 5.5e-15
Identity = 50/84 (59.52%), Postives = 59/84 (70.24%), Query Frame = 0


Query: 9   HHHNQQYSNATT--TAVTVTTMKQELFGGREINGGDQSKILWGYPNWQMNNNNNNVIDSN 68
           H ++ QY NATT  TA TVTT KQE+ GG    GG++S++LWGYPNWQMNNN+    DSN
Sbjct: 181 HSYDHQYGNATTTATATTVTTTKQEVLGG----GGEESRMLWGYPNWQMNNNST---DSN 240

Query: 69  TTTTTMMAAMDFDSGSARESWNNN 91
                 M  MDFDSG+ RESWNNN
Sbjct: 241 ------MMGMDFDSGAVRESWNNN 251

[Close]

BLAST of Pay0014630 vs. NCBI nr
Match: XP_022964815.1 (dof zinc finger protein DOF2.1-like [Cucurbita moschata] >KAG7019260.1 Dof zinc finger protein DOF2.1, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 89.4 bits (220), Expect = 2.1e-14
Identity = 49/84 (58.33%), Postives = 57/84 (67.86%), Query Frame = 0


Query: 9   HHHNQQYSNATT--TAVTVTTMKQELFGGREINGGDQSKILWGYPNWQMNNNNNNVIDSN 68
           H ++ QY N TT  TA TVTT KQE+ GG    GG++S++LWGYPNWQMNNN+    DSN
Sbjct: 184 HSYDHQYGNVTTTATATTVTTTKQEVLGGG--GGGEESRMLWGYPNWQMNNNST---DSN 243

Query: 69  TTTTTMMAAMDFDSGSARESWNNN 91
                 M  MDFDSG  RESWNNN
Sbjct: 244 ------MMGMDFDSGGVRESWNNN 256

The following BLAST results are available for this feature:

BLAST of Pay0014630 vs.


Match Name	E-value	Identity	Description

BLAST of Pay0014630 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3CM87	2.9e-46	96.88	Dof zinc finger protein DOF5.3-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5...	[more]
A0A0A0LSJ8	3.3e-42	90.72	Dof-type domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_1G089510 PE...	[more]
A0A6J1I2W0	2.7e-15	59.52	dof zinc finger protein DOF2.1-like OS=Cucurbita maxima OX=3661 GN=LOC111469422 ...	[more]
A0A6J1HLW7	1.0e-14	58.33	dof zinc finger protein DOF2.1-like OS=Cucurbita moschata OX=3662 GN=LOC11146480...	[more]
A0A2N9FRI5	3.5e-07	48.78	Dof-type domain-containing protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS17715...	[more]

BLAST of Pay0014630 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0051913.1	6.0e-46	96.88	dof zinc finger protein DOF5.3-like [Cucumis melo var. makuwa] >TYK12248.1 dof z...	[more]
XP_004147273.1	6.9e-42	90.72	dof zinc finger protein DOF2.1 [Cucumis sativus] >KGN64763.1 hypothetical protei...	[more]
XP_038893883.1	1.2e-38	89.36	dof zinc finger protein DOF5.3-like [Benincasa hispida]	[more]
XP_022970445.1	5.5e-15	59.52	dof zinc finger protein DOF2.1-like [Cucurbita maxima]	[more]
XP_022964815.1	2.1e-14	58.33	dof zinc finger protein DOF2.1-like [Cucurbita moschata] >KAG7019260.1 Dof zinc ...	[more]

BLAST of Pay0014630 vs. NCBI nr


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Pay0014630.1	Pay0014630.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006355	regulation of transcription, DNA-templated
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003677	DNA binding