Pay0014488 (gene) Melon (Payzawat) v1

Overview


Name	Pay0014488
Type	gene
Organism	Cucumis melo L. var. inodorus cv. Payzawat (Melon (Payzawat) v1)
Description	Ty3-gypsy retrotransposon protein
Location	chr11: 8874923 .. 8875828 (-)
RNA-Seq Expression	Pay0014488
Synteny	Pay0014488

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCTGAGATAGTGAGATTACATGGAGTGCCAGTGTCGATTGTTTCTGATAGAGATGCCCGTTTCACTTCCAAATTCTGGAAGGGTTTGCAAACCGCTATGGGCACGAGGTTAGACTTTAGTACAGCTTTCCATCCATAGACTGACGGTCAGACTGAGCGTCTAAACCAAGTTTTAGAGGATATGTTGCGAGCGTGTGCATTGGAATTTCCAGGTAGTTGGGACTCCCACTTACATTTGATGGAATTTGCTTATAATAACAGTTTCCAGGCTACTATTGGCATGGCACCATTTAAGGCCTTGTACGGCAAATGCTGCAGATCCCCCGTTTGCTGGGGTGAGGTGGGTGAGTAGAGATCGATGGGTCCTGAGTTAGTTCAGTCTACTAACGAAGTGATACAGAAGATTAGATCACGTATGCATACCGCACAGAGTAGGTAGAAGTGTTATGCGGATGTGAGACGGAAGGATCTTGAGTTTGATGTAGGGGACAAGGTGTTCTTAAAGGTAGCACCTATGAGAAGTGTCTTACGATTTAAAAAGAGAGGAAAGCTGAGTCCCCGTTTTGTTAGGCCGTTTGAGATTCTGGAGCGGATTGGCCCTGTAGCTTATCGTTTGGCGTTGCCACCATCACTATCGACAGTTCATGATGTGTTCCATGCTTCTATGTTGAGGAAGTACGTGCCAGATCCATCCCACGTAGTGGATTTCGAGCCACTAGAGATTGATGAAAACTTGAGCTATACAGAACAACTCGTTGAGGTGCTGGCTAGGGAGGTGAAAATGTTGAGGAATAGAGAAATTCCTTTGGTTAAAGTCTTATGGCGGAATCATCGGGTGGAAGAGGCTACATGGGAGCGAGAAGATGACATGAGGTCCCGTTATCCCGAACTGTTCGAGGAATAA

mRNA sequence

ATGTCTGAGATAGTGAGATTACATGGAGTGCCAGTGTCGATTGTTTCTGATAGAGATGCCCGTTTCACTTCCAAATTCTGGAAGGGTTTGCAAACCGCTATGGGCACGAGGCCGTTTGAGATTCTGGAGCGGATTGGCCCTGTAGCTTATCGTTTGGCGTTGCCACCATCACTATCGACAGTTCATGATGTGTTCCATGCTTCTATGTTGAGGAAGTACGTGCCAGATCCATCCCACGTAGTGGATTTCGAGCCACTAGAGATTGATGAAAACTTGAGCTATACAGAACAACTCGTTGAGGTGCTGGCTAGGGAGGTGAAAATGTTGAGGAATAGAGAAATTCCTTTGGTTAAAGTCTTATGGCGGAATCATCGGGTGGAAGAGGCTACATGGGAGCGAGAAGATGACATGAGGTCCCGTTATCCCGAACTGTTCGAGGAATAA

Coding sequence (CDS)

ATGTCTGAGATAGTGAGATTACATGGAGTGCCAGTGTCGATTGTTTCTGATAGAGATGCCCGTTTCACTTCCAAATTCTGGAAGGGTTTGCAAACCGCTATGGGCACGAGGCCGTTTGAGATTCTGGAGCGGATTGGCCCTGTAGCTTATCGTTTGGCGTTGCCACCATCACTATCGACAGTTCATGATGTGTTCCATGCTTCTATGTTGAGGAAGTACGTGCCAGATCCATCCCACGTAGTGGATTTCGAGCCACTAGAGATTGATGAAAACTTGAGCTATACAGAACAACTCGTTGAGGTGCTGGCTAGGGAGGTGAAAATGTTGAGGAATAGAGAAATTCCTTTGGTTAAAGTCTTATGGCGGAATCATCGGGTGGAAGAGGCTACATGGGAGCGAGAAGATGACATGAGGTCCCGTTATCCCGAACTGTTCGAGGAATAA

Protein sequence

MSEIVRLHGVPVSIVSDRDARFTSKFWKGLQTAMGTRPFEILERIGPVAYRLALPPSLSTVHDVFHASMLRKYVPDPSHVVDFEPLEIDENLSYTEQLVEVLAREVKMLRNREIPLVKVLWRNHRVEEATWEREDDMRSRYPELFEE

Homology

[Close]

BLAST of Pay0014488 vs. ExPASy TrEMBL
Match: A0A5D3C850 (Pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1702G00280 PE=4 SV=1)

HSP 1 Score: 253.1 bits (645), Expect = 7.3e-64
Identity = 138/207 (66.67%), Postives = 141/207 (68.12%), Query Frame = 0


Query: 1   MSEIVRLHGVPVSIVSDRDARFTSKFWKGLQTAMGTR----------------------- 60
           MSEIVRLHGVPVSIVS RDARFTSKFWKGLQ  MGTR                       
Sbjct: 427 MSEIVRLHGVPVSIVSHRDARFTSKFWKGLQATMGTRSPVCWGEVGEQRLMGPELVQSTN 486

Query: 61  -------------------------------------PFEILERIGPVAYRLALPPSLST 120
                                                PFEILERIGPVAYRLALPPSLST
Sbjct: 487 EAVQKISSRDKVFLKVAPMKGVLRLERRGKRSPRFVEPFEILERIGPVAYRLALPPSLST 546

Query: 121 VHDVFHASMLRKYVPDPSHVVDFEPLEIDENLSYTEQLVEVLAREVKMLRNREIPLVKVL 148
           VHDVFH SMLRKYVPDPSHVVD+EPLEIDENLSYTEQLVEVLAREVKMLRNREIPLVKVL
Sbjct: 547 VHDVFHVSMLRKYVPDPSHVVDYEPLEIDENLSYTEQLVEVLAREVKMLRNREIPLVKVL 606

[Close]

BLAST of Pay0014488 vs. ExPASy TrEMBL
Match: A0A5A7TRS6 (Pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold157G00260 PE=4 SV=1)

HSP 1 Score: 243.8 bits (621), Expect = 4.4e-61
Identity = 131/192 (68.23%), Postives = 136/192 (70.83%), Query Frame = 0


Query: 1   MSEIVRLHGVPVSIVSDRDARFTSKFWKGLQTAMGTR----------------------- 60
           MSE+VRLHGV VSIVSDRDARFTSKFWKGLQ AMGTR                       
Sbjct: 135 MSEMVRLHGVLVSIVSDRDARFTSKFWKGLQAAMGTRLDFSTTFHPQTDVFGLPLTWHHS 194

Query: 61  ------------------------PFEILERIGPVAYRLALPPSLSTVHDVFHASMLRKY 120
                                   PFEILERI PVAYRLALPPSLS VHDVFH SMLRK 
Sbjct: 195 RPCTENVVDPLFAGRGKLSPRFVGPFEILERISPVAYRLALPPSLSKVHDVFHVSMLRKN 254

Query: 121 VPDPSHVVDFEPLEIDENLSYTEQLVEVLAREVKMLRNREIPLVKVLWRNHRVEEATWER 146
           VPDPSHVVD+EPLEIDENLSYTEQ VEVLAREVKM RNREIPLVKVLWRNHRVE+ATWER
Sbjct: 255 VPDPSHVVDYEPLEIDENLSYTEQPVEVLAREVKMSRNREIPLVKVLWRNHRVEKATWER 314

[Close]

BLAST of Pay0014488 vs. ExPASy TrEMBL
Match: A0A5A7ST76 (Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold1276G00450 PE=4 SV=1)

HSP 1 Score: 240.0 bits (611), Expect = 6.4e-60
Identity = 140/250 (56.00%), Postives = 142/250 (56.80%), Query Frame = 0


Query: 1    MSEIVRLHGVPVSIVSDRDARFTSKFWKGLQTAMGTR----------------------- 60
            MSEIVRLHGVPVSIVSDRDARFTSKFWKGLQTAMGT                        
Sbjct: 1031 MSEIVRLHGVPVSIVSDRDARFTSKFWKGLQTAMGTSYLATIGMAPFEALYGKCCRSPVC 1090

Query: 61   ------------------------------------------------------------ 120
                                                                        
Sbjct: 1091 WGEVGEQRLMGPELVQSTNKAIQKIRSRMHTAQSRQNSYADVRRKDLEFEVGDKVFLKVA 1150

Query: 121  --------------------PFEILERIGPVAYRLALPPSLSTVHDVFHASMLRKYVPDP 148
                                PFEILERIGPVAY LALPPSLSTVHDVFH SMLRKYVPDP
Sbjct: 1151 PMRGVLRFERRGKLSPRFVGPFEILERIGPVAYHLALPPSLSTVHDVFHVSMLRKYVPDP 1210

[Close]

BLAST of Pay0014488 vs. ExPASy TrEMBL
Match: A0A5A7VFT1 (Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold62G00050 PE=4 SV=1)

HSP 1 Score: 236.9 bits (603), Expect = 5.4e-59
Identity = 137/240 (57.08%), Postives = 140/240 (58.33%), Query Frame = 0


Query: 1    MSEIVRLHGVPVSIVSDRDARFTSKFWKGLQTAMGTR----------------------- 60
            MSEIVRLHGVPVSIV DRDARFTSKFWKGLQTAMGT                        
Sbjct: 1128 MSEIVRLHGVPVSIVYDRDARFTSKFWKGLQTAMGTSFQAIIGMAPFEALYGKCCRSPIC 1187

Query: 61   ------------------------------------------------------------ 120
                                                                        
Sbjct: 1188 WAELVQSTNKAIQKIRSRMLTAQSRQKSCVDVRRRDLEFDVGDKVFLKVAPMKGVVRFER 1247

Query: 121  ----------PFEILERIGPVAYRLALPPSLSTVHDVFHASMLRKYVPDPSHVVDFEPLE 148
                       FEILERIGPVAYRLALPPSLS VHDVFH SMLRKYVPDPSHVVD+EPL 
Sbjct: 1248 RGKLSPRFVGSFEILERIGPVAYRLALPPSLSAVHDVFHVSMLRKYVPDPSHVVDYEPLN 1307

[Close]

BLAST of Pay0014488 vs. ExPASy TrEMBL
Match: A0A5D3DUC0 (Pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold30804G00010 PE=4 SV=1)

HSP 1 Score: 236.5 bits (602), Expect = 7.1e-59
Identity = 138/251 (54.98%), Postives = 142/251 (56.57%), Query Frame = 0


Query: 1   MSEIVRLHGVPVSIVSDRDARFTSKFWKGLQTAMGTR----------------------- 60
           MSEIVRLHGVPVSI SDRDARFTSKFWKGLQTA+GTR                       
Sbjct: 47  MSEIVRLHGVPVSIFSDRDARFTSKFWKGLQTALGTRLDFNIAFHPQTEGQTERLNQIPC 106

Query: 61  ------------------------------------------------------------ 120
                                                                       
Sbjct: 107 LLGYVGEQRLMGPELVQSTNEAIQKIRSRMHTAQSRQKSYADVRWKDLEFDVGDKVFLKV 166

Query: 121 ---------------------PFEILERIGPVAYRLALPPSLSTVHDVFHASMLRKYVPD 148
                                PFEILERIGPVAYRLAL PSLS VHDVFH SMLRKYVPD
Sbjct: 167 APMKGILRFERRGKLSPRFVGPFEILERIGPVAYRLALTPSLSAVHDVFHVSMLRKYVPD 226

[Close]

BLAST of Pay0014488 vs. NCBI nr
Match: KAA0033210.1 (pol protein [Cucumis melo var. makuwa] >TYK07510.1 pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 253.1 bits (645), Expect = 1.5e-63
Identity = 138/207 (66.67%), Postives = 141/207 (68.12%), Query Frame = 0


Query: 1   MSEIVRLHGVPVSIVSDRDARFTSKFWKGLQTAMGTR----------------------- 60
           MSEIVRLHGVPVSIVS RDARFTSKFWKGLQ  MGTR                       
Sbjct: 427 MSEIVRLHGVPVSIVSHRDARFTSKFWKGLQATMGTRSPVCWGEVGEQRLMGPELVQSTN 486

Query: 61  -------------------------------------PFEILERIGPVAYRLALPPSLST 120
                                                PFEILERIGPVAYRLALPPSLST
Sbjct: 487 EAVQKISSRDKVFLKVAPMKGVLRLERRGKRSPRFVEPFEILERIGPVAYRLALPPSLST 546

Query: 121 VHDVFHASMLRKYVPDPSHVVDFEPLEIDENLSYTEQLVEVLAREVKMLRNREIPLVKVL 148
           VHDVFH SMLRKYVPDPSHVVD+EPLEIDENLSYTEQLVEVLAREVKMLRNREIPLVKVL
Sbjct: 547 VHDVFHVSMLRKYVPDPSHVVDYEPLEIDENLSYTEQLVEVLAREVKMLRNREIPLVKVL 606

[Close]

BLAST of Pay0014488 vs. NCBI nr
Match: KAA0046102.1 (pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 243.8 bits (621), Expect = 9.2e-61
Identity = 131/192 (68.23%), Postives = 136/192 (70.83%), Query Frame = 0


Query: 1   MSEIVRLHGVPVSIVSDRDARFTSKFWKGLQTAMGTR----------------------- 60
           MSE+VRLHGV VSIVSDRDARFTSKFWKGLQ AMGTR                       
Sbjct: 135 MSEMVRLHGVLVSIVSDRDARFTSKFWKGLQAAMGTRLDFSTTFHPQTDVFGLPLTWHHS 194

Query: 61  ------------------------PFEILERIGPVAYRLALPPSLSTVHDVFHASMLRKY 120
                                   PFEILERI PVAYRLALPPSLS VHDVFH SMLRK 
Sbjct: 195 RPCTENVVDPLFAGRGKLSPRFVGPFEILERISPVAYRLALPPSLSKVHDVFHVSMLRKN 254

Query: 121 VPDPSHVVDFEPLEIDENLSYTEQLVEVLAREVKMLRNREIPLVKVLWRNHRVEEATWER 146
           VPDPSHVVD+EPLEIDENLSYTEQ VEVLAREVKM RNREIPLVKVLWRNHRVE+ATWER
Sbjct: 255 VPDPSHVVDYEPLEIDENLSYTEQPVEVLAREVKMSRNREIPLVKVLWRNHRVEKATWER 314

[Close]

BLAST of Pay0014488 vs. NCBI nr
Match: KAA0033196.1 (ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 240.0 bits (611), Expect = 1.3e-59
Identity = 140/250 (56.00%), Postives = 142/250 (56.80%), Query Frame = 0


Query: 1    MSEIVRLHGVPVSIVSDRDARFTSKFWKGLQTAMGTR----------------------- 60
            MSEIVRLHGVPVSIVSDRDARFTSKFWKGLQTAMGT                        
Sbjct: 1031 MSEIVRLHGVPVSIVSDRDARFTSKFWKGLQTAMGTSYLATIGMAPFEALYGKCCRSPVC 1090

Query: 61   ------------------------------------------------------------ 120
                                                                        
Sbjct: 1091 WGEVGEQRLMGPELVQSTNKAIQKIRSRMHTAQSRQNSYADVRRKDLEFEVGDKVFLKVA 1150

Query: 121  --------------------PFEILERIGPVAYRLALPPSLSTVHDVFHASMLRKYVPDP 148
                                PFEILERIGPVAY LALPPSLSTVHDVFH SMLRKYVPDP
Sbjct: 1151 PMRGVLRFERRGKLSPRFVGPFEILERIGPVAYHLALPPSLSTVHDVFHVSMLRKYVPDP 1210

[Close]

BLAST of Pay0014488 vs. NCBI nr
Match: KAA0065937.1 (ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 236.9 bits (603), Expect = 1.1e-58
Identity = 137/240 (57.08%), Postives = 140/240 (58.33%), Query Frame = 0


Query: 1    MSEIVRLHGVPVSIVSDRDARFTSKFWKGLQTAMGTR----------------------- 60
            MSEIVRLHGVPVSIV DRDARFTSKFWKGLQTAMGT                        
Sbjct: 1128 MSEIVRLHGVPVSIVYDRDARFTSKFWKGLQTAMGTSFQAIIGMAPFEALYGKCCRSPIC 1187

Query: 61   ------------------------------------------------------------ 120
                                                                        
Sbjct: 1188 WAELVQSTNKAIQKIRSRMLTAQSRQKSCVDVRRRDLEFDVGDKVFLKVAPMKGVVRFER 1247

Query: 121  ----------PFEILERIGPVAYRLALPPSLSTVHDVFHASMLRKYVPDPSHVVDFEPLE 148
                       FEILERIGPVAYRLALPPSLS VHDVFH SMLRKYVPDPSHVVD+EPL 
Sbjct: 1248 RGKLSPRFVGSFEILERIGPVAYRLALPPSLSAVHDVFHVSMLRKYVPDPSHVVDYEPLN 1307

[Close]

BLAST of Pay0014488 vs. NCBI nr
Match: TYK27102.1 (pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 236.5 bits (602), Expect = 1.5e-58
Identity = 138/251 (54.98%), Postives = 142/251 (56.57%), Query Frame = 0


Query: 1   MSEIVRLHGVPVSIVSDRDARFTSKFWKGLQTAMGTR----------------------- 60
           MSEIVRLHGVPVSI SDRDARFTSKFWKGLQTA+GTR                       
Sbjct: 47  MSEIVRLHGVPVSIFSDRDARFTSKFWKGLQTALGTRLDFNIAFHPQTEGQTERLNQIPC 106

Query: 61  ------------------------------------------------------------ 120
                                                                       
Sbjct: 107 LLGYVGEQRLMGPELVQSTNEAIQKIRSRMHTAQSRQKSYADVRWKDLEFDVGDKVFLKV 166

Query: 121 ---------------------PFEILERIGPVAYRLALPPSLSTVHDVFHASMLRKYVPD 148
                                PFEILERIGPVAYRLAL PSLS VHDVFH SMLRKYVPD
Sbjct: 167 APMKGILRFERRGKLSPRFVGPFEILERIGPVAYRLALTPSLSAVHDVFHVSMLRKYVPD 226

The following BLAST results are available for this feature:

BLAST of Pay0014488 vs.


Match Name	E-value	Identity	Description

BLAST of Pay0014488 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3C850	7.3e-64	66.67	Pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1702G00280 P...	[more]
A0A5A7TRS6	4.4e-61	68.23	Pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold157G00260 PE...	[more]
A0A5A7ST76	6.4e-60	56.00	Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C2...	[more]
A0A5A7VFT1	5.4e-59	57.08	Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C2...	[more]
A0A5D3DUC0	7.1e-59	54.98	Pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold30804G00010 ...	[more]

BLAST of Pay0014488 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0033210.1	1.5e-63	66.67	pol protein [Cucumis melo var. makuwa] >TYK07510.1 pol protein [Cucumis melo var...	[more]
KAA0046102.1	9.2e-61	68.23	pol protein [Cucumis melo var. makuwa]	[more]
KAA0033196.1	1.3e-59	56.00	ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]	[more]
KAA0065937.1	1.1e-58	57.08	ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]	[more]
TYK27102.1	1.5e-58	54.98	pol protein [Cucumis melo var. makuwa]	[more]

BLAST of Pay0014488 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (Payzawat) v1
Date Performed: 2021-10-25

Position :

Zoom :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR46148	FAMILY NOT NAMED	coord: 25..145
None	No IPR available	PANTHER	PTHR46148:SF33	OS05G0296332 PROTEIN	coord: 25..145
IPR016197	Chromo-like domain superfamily	SUPERFAMILY	54160	Chromo domain-like	coord: 59..145

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Pay0014488.1	Pay0014488.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0090304	nucleic acid metabolic process
molecular_function	GO:0003824	catalytic activity