Pay0014446 (gene) Melon (Payzawat) v1

Overview


Name	Pay0014446
Type	gene
Organism	Cucumis melo L. var. inodorus cv. Payzawat (Melon (Payzawat) v1)
Description	Pol protein
Location	chr01: 25975116 .. 25975932 (+)
RNA-Seq Expression	Pay0014446
Synteny	Pay0014446

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTTAGGCCCTAAGCTAGTTCATACCACTAATGAAGCTACACAGAAGATTAGAGCCTGTATGTTGATAGCACAGAGCAGACAGAAGAGTTACGATGATGTACGACATAGGGATCTTGAGTTTGATATAGGGGACATGGTTTTTGTGAAGGTAACACCAATGAAGGGTGTTCTGAGATTTGAGAAGAGGGGAAGGTTGAGTCCCTTTTTGGTAGGGTCATTTGAGATACTTGAGCGGATTGACCCGTAGCTTACTATTTGGCTTTACCTCCATCATTTTCTGTAGTTCATGATGTATTTATTCCATGTCTCTATGCTGTATGTAGCAGATTCAACATATATTTGACTTTGAGCCATTGCAAACTAATGAGATTTTGAGTTATGAGGAGCAACAAGTTGAGATTTTGGCAATGGAAGTTAAGCTACTTTGTAGCAGAGGTATTGCACTAGTTAAAGTCCTTTGACGAAACCATAATGTTGAAGAGGCCACCTGGGAAAGAGAAGATGACGTTAGAGCCTAGTATCCCTAGCTGTTCGAGGATTAGAACTTTCGAGGACGAAAGTTTCTCAAAGGAGGGAAGATTGTAATGCGCCAAACATTAAGATAATTTTAAATTTAATTATCTTGGTTTAAGTTATTTATGTTGGAATTATTGGTGTTAGTTGAGATATTTTTGGAAATTGAGAAATTTCTTCGTCCACAAGAAGTGGCATCATCGTCTTCCTTCGTCCGCAAGGTTTCTATATTTTTCGTCAGATATTTTCTATCACGTCCAGTCGTAGTTGGAGATCCAGGCTTCGTTCAAGCATTCGTGTGA

mRNA sequence

ATGTTAGGCCCTAAGCTAGTTCATACCACTAATGAAGCTACACAGAAGATTAGAGCCTGTATGTTGATAGCACAGAGCAGACAGAAGAGTTACGATGATGTACGACATAGGGATCTTGAGTTTGATATAGGGGACATGGTTTTTGTGAAGGTAACACCAATGAAGGGTGTTCTGAGATTTGAGAAGAGGGGAAGGTTGAGTCCCTTTTTGATTCAACATATATTTGACTTTGAGCCATTGCAAACTAATGAGATTTTGAGTTATGAGGAGCAACAAGTTGAGATTTTGGCAATGGAAGTTAAGCTACTTTGTAGCAGAGTTGAGATATTTTTGGAAATTGAGAAATTTCTTCGTCCACAAGAAGTGGCATCATCGTCTTCCTTCGTCCGCAAGGTTTCTATATTTTTCGTCAGATATTTTCTATCACGTCCAGTCGTAGTTGGAGATCCAGGCTTCGTTCAAGCATTCGTGTGA

Coding sequence (CDS)

ATGTTAGGCCCTAAGCTAGTTCATACCACTAATGAAGCTACACAGAAGATTAGAGCCTGTATGTTGATAGCACAGAGCAGACAGAAGAGTTACGATGATGTACGACATAGGGATCTTGAGTTTGATATAGGGGACATGGTTTTTGTGAAGGTAACACCAATGAAGGGTGTTCTGAGATTTGAGAAGAGGGGAAGGTTGAGTCCCTTTTTGATTCAACATATATTTGACTTTGAGCCATTGCAAACTAATGAGATTTTGAGTTATGAGGAGCAACAAGTTGAGATTTTGGCAATGGAAGTTAAGCTACTTTGTAGCAGAGTTGAGATATTTTTGGAAATTGAGAAATTTCTTCGTCCACAAGAAGTGGCATCATCGTCTTCCTTCGTCCGCAAGGTTTCTATATTTTTCGTCAGATATTTTCTATCACGTCCAGTCGTAGTTGGAGATCCAGGCTTCGTTCAAGCATTCGTGTGA

Protein sequence

MLGPKLVHTTNEATQKIRACMLIAQSRQKSYDDVRHRDLEFDIGDMVFVKVTPMKGVLRFEKRGRLSPFLIQHIFDFEPLQTNEILSYEEQQVEILAMEVKLLCSRVEIFLEIEKFLRPQEVASSSSFVRKVSIFFVRYFLSRPVVVGDPGFVQAFV

Homology

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BLAST of Pay0014446 vs. ExPASy TrEMBL
Match: A0A1S4E1W4 (uncharacterized protein LOC107991586 OS=Cucumis melo OX=3656 GN=LOC107991586 PE=4 SV=1)

HSP 1 Score: 303.1 bits (775), Expect = 6.6e-79
Identity = 155/157 (98.73%), Postives = 155/157 (98.73%), Query Frame = 0


Query: 1   MLGPKLVHTTNEATQKIRACMLIAQSRQKSYDDVRHRDLEFDIGDMVFVKVTPMKGVLRF 60
           MLGPKLVHTTNEATQKIRACMLIAQSRQKSYDDVRHRD EFDIGDMVFVKVTPMKGVLRF
Sbjct: 1   MLGPKLVHTTNEATQKIRACMLIAQSRQKSYDDVRHRDFEFDIGDMVFVKVTPMKGVLRF 60

Query: 61  EKRGRLSPFLIQHIFDFEPLQTNEILSYEEQQVEILAMEVKLLCSRVEIFLEIEKFLRPQ 120
           EKRGRLSPFLIQHIFDFEPLQTNEILSYEEQQVEILAMEVKLLCSRVEIFLEIEKFLRPQ
Sbjct: 61  EKRGRLSPFLIQHIFDFEPLQTNEILSYEEQQVEILAMEVKLLCSRVEIFLEIEKFLRPQ 120

Query: 121 EVASSSSFVRKVSIFFVRYFLSRPVVVGDPGFVQAFV 158
           EVASSSSFVRKVSIFFVRYFLSR VVVGDPGFVQAFV
Sbjct: 121 EVASSSSFVRKVSIFFVRYFLSRAVVVGDPGFVQAFV 157

[Close]

BLAST of Pay0014446 vs. ExPASy TrEMBL
Match: A0A5A7SKI0 (DNA/RNA polymerases superfamily protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold343G00780 PE=4 SV=1)

HSP 1 Score: 237.7 bits (605), Expect = 3.4e-59
Identity = 128/147 (87.07%), Postives = 129/147 (87.76%), Query Frame = 0


Query: 21  MLIAQSRQKSYDDVRHRDLEFDIGDMVFVKVTPMKGVLRFEKRGRLSPFLIQ-------- 80
           MLIAQSRQKSYDDVRHRDLEFDIGDMVFVKVTPMKGVLRFEKRGRL   +          
Sbjct: 1   MLIAQSRQKSYDDVRHRDLEFDIGDMVFVKVTPMKGVLRFEKRGRLIHDVFHVSMLYVAD 60

Query: 81  --HIFDFEPLQTNEILSYEEQQVEILAMEVKLLCSRVEIFLEIEKFLRPQEVASSSSFVR 140
             HI DFEPLQTNEILSYEEQQVEILAMEVKLLCSRVEIFLEIEKFLRPQEVASSSSFVR
Sbjct: 61  STHIVDFEPLQTNEILSYEEQQVEILAMEVKLLCSRVEIFLEIEKFLRPQEVASSSSFVR 120

Query: 141 KVSIFFVRYFLSRPVVVGDPGFVQAFV 158
           KV IFFVRYFLSR VVVGDPGFVQAFV
Sbjct: 121 KVPIFFVRYFLSRAVVVGDPGFVQAFV 147

[Close]

BLAST of Pay0014446 vs. ExPASy TrEMBL
Match: A0A5A7VHE5 (Pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold572G00270 PE=4 SV=1)

HSP 1 Score: 147.1 bits (370), Expect = 6.0e-32
Identity = 77/107 (71.96%), Postives = 87/107 (81.31%), Query Frame = 0


Query: 1   MLGPKLVHTTNEATQKIRACMLIAQSRQKSYDDVRHRDLEFDIGDMVFVKVTPMKGVLRF 60
           +LGP+LV TTN A QKIRA ML AQSRQKSY DVR +DLEFD+GDMVF+KV PMKGVLR 
Sbjct: 293 LLGPELVQTTNAAIQKIRAHMLTAQSRQKSYADVRRKDLEFDVGDMVFLKVAPMKGVLRL 352

Query: 61  EKRGRLSPFLIQHIFDFEPLQTNEILSYEEQQVEILAMEVKLLCSRV 108
           EK+G+LSP    H+ DFEPLQ NE LSYEEQ +EILA EVK L +RV
Sbjct: 353 EKKGKLSPH-PTHVVDFEPLQINENLSYEEQPIEILAREVKRLRNRV 398

[Close]

BLAST of Pay0014446 vs. ExPASy TrEMBL
Match: A0A5D3CR86 (Pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1193G00090 PE=4 SV=1)

HSP 1 Score: 145.2 bits (365), Expect = 2.3e-31
Identity = 77/122 (63.11%), Postives = 89/122 (72.95%), Query Frame = 0


Query: 1    MLGPKLVHTTNEATQKIRACMLIAQSRQKSYDDVRHRDLEFDIGDMVFVKVTPMKGVLRF 60
            +L P+LV TTNEA QKIRA ML A SRQKSY DVRH+DLEFD+GDMVF+KV PMKGVLRF
Sbjct: 1102 LLDPELVQTTNEAIQKIRARMLTAHSRQKSYADVRHKDLEFDVGDMVFLKVAPMKGVLRF 1161

Query: 61   EKRGRLSPFLI----------------QHIFDFEPLQTNEILSYEEQQVEILAMEVKLLC 107
            EK+G+LSP  +                 H+ DFEPLQ NE LSY+EQ VEILA EVK+L 
Sbjct: 1162 EKKGKLSPRFVGPFEILERIGPVAYHPTHVVDFEPLQINENLSYDEQPVEILAKEVKMLR 1221

[Close]

BLAST of Pay0014446 vs. ExPASy TrEMBL
Match: A0A5A7V152 (Pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold518G00140 PE=4 SV=1)

HSP 1 Score: 145.2 bits (365), Expect = 2.3e-31
Identity = 77/122 (63.11%), Postives = 89/122 (72.95%), Query Frame = 0


Query: 1    MLGPKLVHTTNEATQKIRACMLIAQSRQKSYDDVRHRDLEFDIGDMVFVKVTPMKGVLRF 60
            +L P+LV TTNEA QKIRA ML A SRQKSY DVRH+DLEFD+GDMVF+KV PMKGVLRF
Sbjct: 1065 LLDPELVQTTNEAIQKIRARMLTAHSRQKSYADVRHKDLEFDVGDMVFLKVAPMKGVLRF 1124

Query: 61   EKRGRLSPFLI----------------QHIFDFEPLQTNEILSYEEQQVEILAMEVKLLC 107
            EK+G+LSP  +                 H+ DFEPLQ NE LSY+EQ VEILA EVK+L 
Sbjct: 1125 EKKGKLSPRFVGPFEILERIGPVAYHPTHVVDFEPLQINENLSYDEQPVEILAKEVKMLR 1184

[Close]

BLAST of Pay0014446 vs. NCBI nr
Match: XP_016902219.1 (PREDICTED: uncharacterized protein LOC107991586 [Cucumis melo])

HSP 1 Score: 303.1 bits (775), Expect = 1.4e-78
Identity = 155/157 (98.73%), Postives = 155/157 (98.73%), Query Frame = 0


Query: 1   MLGPKLVHTTNEATQKIRACMLIAQSRQKSYDDVRHRDLEFDIGDMVFVKVTPMKGVLRF 60
           MLGPKLVHTTNEATQKIRACMLIAQSRQKSYDDVRHRD EFDIGDMVFVKVTPMKGVLRF
Sbjct: 1   MLGPKLVHTTNEATQKIRACMLIAQSRQKSYDDVRHRDFEFDIGDMVFVKVTPMKGVLRF 60

Query: 61  EKRGRLSPFLIQHIFDFEPLQTNEILSYEEQQVEILAMEVKLLCSRVEIFLEIEKFLRPQ 120
           EKRGRLSPFLIQHIFDFEPLQTNEILSYEEQQVEILAMEVKLLCSRVEIFLEIEKFLRPQ
Sbjct: 61  EKRGRLSPFLIQHIFDFEPLQTNEILSYEEQQVEILAMEVKLLCSRVEIFLEIEKFLRPQ 120

Query: 121 EVASSSSFVRKVSIFFVRYFLSRPVVVGDPGFVQAFV 158
           EVASSSSFVRKVSIFFVRYFLSR VVVGDPGFVQAFV
Sbjct: 121 EVASSSSFVRKVSIFFVRYFLSRAVVVGDPGFVQAFV 157

[Close]

BLAST of Pay0014446 vs. NCBI nr
Match: KAA0026214.1 (DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa] >TYK30742.1 DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa])

HSP 1 Score: 237.7 bits (605), Expect = 7.0e-59
Identity = 128/147 (87.07%), Postives = 129/147 (87.76%), Query Frame = 0


Query: 21  MLIAQSRQKSYDDVRHRDLEFDIGDMVFVKVTPMKGVLRFEKRGRLSPFLIQ-------- 80
           MLIAQSRQKSYDDVRHRDLEFDIGDMVFVKVTPMKGVLRFEKRGRL   +          
Sbjct: 1   MLIAQSRQKSYDDVRHRDLEFDIGDMVFVKVTPMKGVLRFEKRGRLIHDVFHVSMLYVAD 60

Query: 81  --HIFDFEPLQTNEILSYEEQQVEILAMEVKLLCSRVEIFLEIEKFLRPQEVASSSSFVR 140
             HI DFEPLQTNEILSYEEQQVEILAMEVKLLCSRVEIFLEIEKFLRPQEVASSSSFVR
Sbjct: 61  STHIVDFEPLQTNEILSYEEQQVEILAMEVKLLCSRVEIFLEIEKFLRPQEVASSSSFVR 120

Query: 141 KVSIFFVRYFLSRPVVVGDPGFVQAFV 158
           KV IFFVRYFLSR VVVGDPGFVQAFV
Sbjct: 121 KVPIFFVRYFLSRAVVVGDPGFVQAFV 147

[Close]

BLAST of Pay0014446 vs. NCBI nr
Match: KAA0066507.1 (pol protein [Cucumis melo var. makuwa] >TYK06133.1 pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 147.1 bits (370), Expect = 1.2e-31
Identity = 77/107 (71.96%), Postives = 87/107 (81.31%), Query Frame = 0


Query: 1   MLGPKLVHTTNEATQKIRACMLIAQSRQKSYDDVRHRDLEFDIGDMVFVKVTPMKGVLRF 60
           +LGP+LV TTN A QKIRA ML AQSRQKSY DVR +DLEFD+GDMVF+KV PMKGVLR 
Sbjct: 293 LLGPELVQTTNAAIQKIRAHMLTAQSRQKSYADVRRKDLEFDVGDMVFLKVAPMKGVLRL 352

Query: 61  EKRGRLSPFLIQHIFDFEPLQTNEILSYEEQQVEILAMEVKLLCSRV 108
           EK+G+LSP    H+ DFEPLQ NE LSYEEQ +EILA EVK L +RV
Sbjct: 353 EKKGKLSPH-PTHVVDFEPLQINENLSYEEQPIEILAREVKRLRNRV 398

[Close]

BLAST of Pay0014446 vs. NCBI nr
Match: TYK14095.1 (pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 145.2 bits (365), Expect = 4.7e-31
Identity = 77/122 (63.11%), Postives = 89/122 (72.95%), Query Frame = 0


Query: 1    MLGPKLVHTTNEATQKIRACMLIAQSRQKSYDDVRHRDLEFDIGDMVFVKVTPMKGVLRF 60
            +L P+LV TTNEA QKIRA ML A SRQKSY DVRH+DLEFD+GDMVF+KV PMKGVLRF
Sbjct: 1102 LLDPELVQTTNEAIQKIRARMLTAHSRQKSYADVRHKDLEFDVGDMVFLKVAPMKGVLRF 1161

Query: 61   EKRGRLSPFLI----------------QHIFDFEPLQTNEILSYEEQQVEILAMEVKLLC 107
            EK+G+LSP  +                 H+ DFEPLQ NE LSY+EQ VEILA EVK+L 
Sbjct: 1162 EKKGKLSPRFVGPFEILERIGPVAYHPTHVVDFEPLQINENLSYDEQPVEILAKEVKMLR 1221

[Close]

BLAST of Pay0014446 vs. NCBI nr
Match: KAA0059509.1 (pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 145.2 bits (365), Expect = 4.7e-31
Identity = 77/122 (63.11%), Postives = 89/122 (72.95%), Query Frame = 0


Query: 1    MLGPKLVHTTNEATQKIRACMLIAQSRQKSYDDVRHRDLEFDIGDMVFVKVTPMKGVLRF 60
            +L P+LV TTNEA QKIRA ML A SRQKSY DVRH+DLEFD+GDMVF+KV PMKGVLRF
Sbjct: 1065 LLDPELVQTTNEAIQKIRARMLTAHSRQKSYADVRHKDLEFDVGDMVFLKVAPMKGVLRF 1124

Query: 61   EKRGRLSPFLI----------------QHIFDFEPLQTNEILSYEEQQVEILAMEVKLLC 107
            EK+G+LSP  +                 H+ DFEPLQ NE LSY+EQ VEILA EVK+L 
Sbjct: 1125 EKKGKLSPRFVGPFEILERIGPVAYHPTHVVDFEPLQINENLSYDEQPVEILAKEVKMLR 1184

The following BLAST results are available for this feature:

BLAST of Pay0014446 vs.


Match Name	E-value	Identity	Description

BLAST of Pay0014446 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S4E1W4	6.6e-79	98.73	uncharacterized protein LOC107991586 OS=Cucumis melo OX=3656 GN=LOC107991586 PE=...	[more]
A0A5A7SKI0	3.4e-59	87.07	DNA/RNA polymerases superfamily protein OS=Cucumis melo var. makuwa OX=1194695 G...	[more]
A0A5A7VHE5	6.0e-32	71.96	Pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold572G00270 PE...	[more]
A0A5D3CR86	2.3e-31	63.11	Pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1193G00090 P...	[more]
A0A5A7V152	2.3e-31	63.11	Pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold518G00140 PE...	[more]

BLAST of Pay0014446 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_016902219.1	1.4e-78	98.73	PREDICTED: uncharacterized protein LOC107991586 [Cucumis melo]	[more]
KAA0026214.1	7.0e-59	87.07	DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa] >TYK30742.1 D...	[more]
KAA0066507.1	1.2e-31	71.96	pol protein [Cucumis melo var. makuwa] >TYK06133.1 pol protein [Cucumis melo var...	[more]
TYK14095.1	4.7e-31	63.11	pol protein [Cucumis melo var. makuwa]	[more]
KAA0059509.1	4.7e-31	63.11	pol protein [Cucumis melo var. makuwa]	[more]

BLAST of Pay0014446 vs. NCBI nr


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Pay0014446.1	Pay0014446.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015074	DNA integration
biological_process	GO:0090305	nucleic acid phosphodiester bond hydrolysis
biological_process	GO:0006508	proteolysis
biological_process	GO:0006278	RNA-dependent DNA biosynthetic process
molecular_function	GO:0004190	aspartic-type endopeptidase activity
molecular_function	GO:0004519	endonuclease activity
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0003964	RNA-directed DNA polymerase activity
molecular_function	GO:0008270	zinc ion binding