Pay0014383 (gene) Melon (Payzawat) v1

Overview


Name	Pay0014383
Type	gene
Organism	Cucumis melo L. var. inodorus cv. Payzawat (Melon (Payzawat) v1)
Description	DNA-directed RNA polymerase II subunit RPB7
Location	chr09: 15226391 .. 15229086 (+)
RNA-Seq Expression	Pay0014383
Synteny	Pay0014383

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexonpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTTTTTTCACATAGTTCTGGAGAGGAATATGCAGCTACACCCTCGCCACTTTGGCCGTAACGAACCCTACGTGAGAACCTGGTGTCCAAACTGATGAAAGATGTTGAGGGCACCTGCAGGTTTGTTAACTGTTTTTCCTACCTTATTGTACACTAGAAAATTCATGTTGCTATTATTTTCTTTTTGTTAATTTTGGAGAAAATATCTTGTGATAAGATGAATTACTAGATTTGATCTTGGATTATGAGTTGTTGGGTGGCATCCCATTAGCTTTATTTCACGGCTGTCCATTATAGGATTTCTTTCATTCTAGTTAACTTTTCTTCGTAGTACTTCTAATTGATGATTCAATAATGTTGAAACATATTGCTAATATGTTTATGGAGAGGCTTTGGACATCTGAGAAACACGTGAGAAAAGATAGTTGTTTTAATAGACATCTCAGGTTTTTACATTAGTTGTTTAAATAGACATTCAGCTCCCACTGAATCAATGAAAGATCCAAGCTTCAATGGGGTGATGAACAGAGTCTGGAGAAGTTAATATTACTAATTGGGCCATTGATGTAATTGGTGGTAAAATATTAGCTGAGGGAAGTTTAAACCTTGTTTCGCTGGATTTTTCTTGTGTTGTATGATACACATAATTCTATTATGATGCATATGCATGTCCCTTCTTCATTATATATTAAAATAGCATGTCAGTTCATGAACATATGAAAGTAGATAAAAATAGTTTGACCGATGATATTTCTTTTGAATGTTTGATACTTTGTTCAGCTAGTGAGTGGTTAGGGGGGTTTCGTTATTGAAAAATGTTTATATGTTGTCGCAGCGGCCGGCATGGGTTTGTAGTTGCAATCACAGGAATTGAGAATATTGGGAAAGGATTGATTCGCGATGGGACTGGCTTTGTCACTTTTCCCGTGAAATACCAATGTGTGGTGTTTCGACCATTCAAGGGAGAAATTTTGGAAGCGGTTGTTACTATGGTAAACAAGGTAAGTATATGTCACTTTTTTGCTATCTAGAAAGTAAAAAAATATTTTAAAAAAATTAAAACATTAATAATGTGCAACTATTGTAGATGGGCTTCTTTGCTGAAGCTGGACCTGTTCAGATTTTTGTTTCAAACCATGTAAGTACATACTTTTAGCTCATTTCAGTTATCGTTTTTCTCCTTTTTGGCTCACTTTGATGTTACAAGCCACCAAGTGTCTTGAAGCTTCATTTATGAAACAATTCCTTACCAAATATAAGTGGGGTGGGACAACATGGTAGTGATGGTTAGCGAGGTTCCTTATGCCAATGAAACTTTTGTCATGTTGTCCACAAAATTGTGCAATGCATATTTAGTGAGAACTAGAGAAGTAATATGAAAAAGTGGATTGTAAAAGTATTAAGAGAGATTCAGAAATTTGTTATGAATGTGTATCTGGTTCATTGTGCGGTTAAATATTTAAGCAAACGAACACTTTCTTAAGTTTCTAGTTTGTTGTTTGATACTTTTCAGCGTTGTTGTGCTATGTTAAATCCGATCAACATGCTGGCCTATCCATGAGATACAATTTTTTTCTTAGCACTACAAACACATGTATATTATGCTCAGCAACCCTATAACAAAATTTTCATTTCCAAGCTTTTCATATGGCAAATTCTATACCTGTCTTGGCTTCAAGCAACCATTATTTTATTTGTAATGAATTTATTTCCTAGCTTTCCAAGATGTTAGGTTGGCGATCAATACCAAAGTACCAAATCTAAATGGTTCAAACACCTACTTGAATTTACTCCCGCCAAACTGAATTTGCAGCACCAACATCTTGGCTTTTATTCCTTTTATATATTATTCTCCCATGAGTGTGCTTAACCTTCACTAAACTCAACTCACATCTTGTGTTTCAGTTGATACCAGATGATATGGAGTTTCAGTCTGGAGATGTGCCAAACTATACCACGTCAGATGGATCGGTATATTTCTATTTTACATGCATTTTCTAGTATAGACTGATAATGCTCTCTTGACGTGTTAAATTTACTGAATTATCTTTGATCTCTTGTAGGTTAAGATTCAGAAGGATAGTGAAGTTCGATTAAAGATAATTGGCACTCGAGTAGATGCAACTGAAATTGTATTTCCTTCTCTTCCTTATTTAGTATTGTTTTTCTAAAATTTATTTGCTCTGTCCTTTGATGGTGCAAGTTAAATTTTCTTTTCTATGAAAATATAATGCTTTGCCTTCATTCTTACCATTTTAAAATCAAAGGATGCCTTTGGTAGCAAAGGGTCTAAAGGCTCCTAAGTTTTTAAGAGTAATTTAAAATGTTTTCCCTTTTATCCCAGTTGTGGAGTAGTAGGGTGTATATGTTGATATTTTAATGACAGAAAAGATATACTATATACATCTATATAAGCCTGACCTGAATGATAGTTATGAGATTCTTTTTAACTTTTTAGGAGAAAGTCGAAAAGTTATAGTCGATTTATTTAGCATATATTCTCCCAAGTGGTGAGAATACTCAAAACTTAGCAACTCCACGTTAGTTGTTTTTGTGACTTTGATAGAATCTTTGTGCCATTATCAAATTCTGGAATCTGGCGTGTCTCATTTAACTATTATTTTGCTTGCAGTTTTGTATTGGAACCATAAAAGATGACTTCTTGGGTGTGATCAATGACCCTTCAGCGGCTTAG

mRNA sequence

ATGTTTTTTCACATAGTTCTGGAGAGGAATATGCAGCTACACCCTCGCCACTTTGGCCGTAACGAACCCTACGTGAGAACCTGCGGCCGGCATGGGTTTGTAGTTGCAATCACAGGAATTGAGAATATTGGGAAAGGATTGATTCGCGATGGGACTGGCTTTGTCACTTTTCCCGTGAAATACCAATGTGTGGTGTTTCGACCATTCAAGGGAGAAATTTTGGAAGCGGTTGTTACTATGGTAAACAAGATGGGCTTCTTTGCTGAAGCTGGACCTGTTCAGATTTTTGTTTCAAACCATTTGATACCAGATGATATGGAGTTTCAGTCTGGAGATGTGCCAAACTATACCACGTCAGATGGATCGGTTAAGATTCAGAAGGATAGTGAAGTTCGATTAAAGATAATTGGCACTCGAGTAGATGCAACTGAAATTTTTTGTATTGGAACCATAAAAGATGACTTCTTGGGTGTGATCAATGACCCTTCAGCGGCTTAG

Coding sequence (CDS)

ATGTTTTTTCACATAGTTCTGGAGAGGAATATGCAGCTACACCCTCGCCACTTTGGCCGTAACGAACCCTACGTGAGAACCTGCGGCCGGCATGGGTTTGTAGTTGCAATCACAGGAATTGAGAATATTGGGAAAGGATTGATTCGCGATGGGACTGGCTTTGTCACTTTTCCCGTGAAATACCAATGTGTGGTGTTTCGACCATTCAAGGGAGAAATTTTGGAAGCGGTTGTTACTATGGTAAACAAGATGGGCTTCTTTGCTGAAGCTGGACCTGTTCAGATTTTTGTTTCAAACCATTTGATACCAGATGATATGGAGTTTCAGTCTGGAGATGTGCCAAACTATACCACGTCAGATGGATCGGTTAAGATTCAGAAGGATAGTGAAGTTCGATTAAAGATAATTGGCACTCGAGTAGATGCAACTGAAATTTTTTGTATTGGAACCATAAAAGATGACTTCTTGGGTGTGATCAATGACCCTTCAGCGGCTTAG

Protein sequence

MFFHIVLERNMQLHPRHFGRNEPYVRTCGRHGFVVAITGIENIGKGLIRDGTGFVTFPVKYQCVVFRPFKGEILEAVVTMVNKMGFFAEAGPVQIFVSNHLIPDDMEFQSGDVPNYTTSDGSVKIQKDSEVRLKIIGTRVDATEIFCIGTIKDDFLGVINDPSAA

Homology

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BLAST of Pay0014383 vs. ExPASy Swiss-Prot
Match: P46279 (DNA-directed RNA polymerase II subunit RPB7 OS=Glycine max OX=3847 PE=2 SV=1)

HSP 1 Score: 307.8 bits (787), Expect = 7.6e-83
Identity = 154/174 (88.51%), Postives = 159/174 (91.38%), Query Frame = 0


Query: 1   MFFHIVLERNMQLHPRHFGRN----------EPYVRTC-GRHGFVVAITGIENIGKGLIR 60
           MFFHIVLERNMQLHPR+FGRN          +    TC GRHGFVVA+TGIENIGKGLIR
Sbjct: 1   MFFHIVLERNMQLHPRYFGRNLRDNLVSKLMKDVEGTCSGRHGFVVAVTGIENIGKGLIR 60

Query: 61  DGTGFVTFPVKYQCVVFRPFKGEILEAVVTMVNKMGFFAEAGPVQIFVSNHLIPDDMEFQ 120
           DGTGFVTFPVKYQCVVFRPFKGEILEAVVTMVNKMGFFAEAGPVQIFVSNHLIPDDMEFQ
Sbjct: 61  DGTGFVTFPVKYQCVVFRPFKGEILEAVVTMVNKMGFFAEAGPVQIFVSNHLIPDDMEFQ 120

Query: 121 SGDVPNYTTSDGSVKIQKDSEVRLKIIGTRVDATEIFCIGTIKDDFLGVINDPS 164
           SGD+PNYTTSDGSVKIQKDSEVRLKIIGTRVDATEIFCIGTIKDDFLGVINDP+
Sbjct: 121 SGDMPNYTTSDGSVKIQKDSEVRLKIIGTRVDATEIFCIGTIKDDFLGVINDPA 174

[Close]

BLAST of Pay0014383 vs. ExPASy Swiss-Prot
Match: P38421 (DNA-directed RNA polymerase II subunit 7 OS=Arabidopsis thaliana OX=3702 GN=NRPB7 PE=1 SV=1)

HSP 1 Score: 295.8 bits (756), Expect = 3.0e-79
Identity = 148/176 (84.09%), Postives = 156/176 (88.64%), Query Frame = 0


Query: 1   MFFHIVLERNMQLHPRHFGRN----------EPYVRTC-GRHGFVVAITGIENIGKGLIR 60
           MFFHIVLERNMQLHPR FGRN          +    TC GRHGFVVAITGI+ IGKGLIR
Sbjct: 1   MFFHIVLERNMQLHPRFFGRNLKENLVSKLMKDVEGTCSGRHGFVVAITGIDTIGKGLIR 60

Query: 61  DGTGFVTFPVKYQCVVFRPFKGEILEAVVTMVNKMGFFAEAGPVQIFVSNHLIPDDMEFQ 120
           DGTGFVTFPVKYQCVVFRPFKGEILEAVVT+VNKMGFFAEAGPVQIFVS HLIPDDMEFQ
Sbjct: 61  DGTGFVTFPVKYQCVVFRPFKGEILEAVVTLVNKMGFFAEAGPVQIFVSKHLIPDDMEFQ 120

Query: 121 SGDVPNYTTSDGSVKIQKDSEVRLKIIGTRVDATEIFCIGTIKDDFLGVINDPSAA 166
           +GD+PNYTTSDGSVKIQK+ EVRLKIIGTRVDAT IFC+GTIKDDFLGVINDP+AA
Sbjct: 121 AGDMPNYTTSDGSVKIQKECEVRLKIIGTRVDATAIFCVGTIKDDFLGVINDPAAA 176

[Close]

BLAST of Pay0014383 vs. ExPASy Swiss-Prot
Match: Q5E9B8 (DNA-directed RNA polymerase II subunit RPB7 OS=Bos taurus OX=9913 GN=POLR2G PE=1 SV=1)

HSP 1 Score: 183.7 bits (465), Expect = 1.7e-45
Identity = 88/172 (51.16%), Postives = 121/172 (70.35%), Query Frame = 0


Query: 1   MFFHIVLERNMQLHPRHFGRN----------EPYVRTC-GRHGFVVAITGIENIGKGLIR 60
           MF+HI LE  + LHPR+FG N               TC G++GFV+A+T I+NIG G+I+
Sbjct: 1   MFYHISLEHEILLHPRYFGPNLLNTVKQKLFTEVEGTCTGKYGFVIAVTTIDNIGAGVIQ 60

Query: 61  DGTGFVTFPVKYQCVVFRPFKGEILEAVVTMVNKMGFFAEAGPVQIFVSNHLIPDDMEFQ 120
            G GFV +PVKY+ +VFRPFKGE+++AVVT VNK+G F E GP+  F+S H IP +MEF 
Sbjct: 61  PGRGFVLYPVKYKAIVFRPFKGEVVDAVVTQVNKVGLFTEIGPMSCFISRHSIPSEMEFD 120

Query: 121 -SGDVPNYTTSDGSVKIQKDSEVRLKIIGTRVDATEIFCIGTIKDDFLGVIN 161
            + + P Y T D  + IQ+D E+RLKI+GTRVD  +IF IG++ DD+LG+++
Sbjct: 121 PNSNPPCYKTMDEDIVIQQDDEIRLKIVGTRVDKNDIFAIGSLMDDYLGLVS 172

[Close]

BLAST of Pay0014383 vs. ExPASy Swiss-Prot
Match: Q7ZW41 (DNA-directed RNA polymerase II subunit RPB7 OS=Danio rerio OX=7955 GN=polr2g PE=2 SV=1)

HSP 1 Score: 183.7 bits (465), Expect = 1.7e-45
Identity = 89/172 (51.74%), Postives = 121/172 (70.35%), Query Frame = 0


Query: 1   MFFHIVLERNMQLHPRHFGRN----------EPYVRTC-GRHGFVVAITGIENIGKGLIR 60
           MF+HI LE  + LHPR+FG N               TC G++GFV+A+T I+NIG G+I+
Sbjct: 1   MFYHISLEHEILLHPRYFGPNLLNTVKQKLFTEVEGTCTGKYGFVIAVTTIDNIGAGVIQ 60

Query: 61  DGTGFVTFPVKYQCVVFRPFKGEILEAVVTMVNKMGFFAEAGPVQIFVSNHLIPDDMEFQ 120
            G GFV +PVKY+ +VFRPFKGE+++AVVT VNK+G F E GP+  F+S H IP +MEF 
Sbjct: 61  PGRGFVLYPVKYKAIVFRPFKGEVVDAVVTQVNKVGLFTEIGPMSCFISRHSIPSEMEFD 120

Query: 121 -SGDVPNYTTSDGSVKIQKDSEVRLKIIGTRVDATEIFCIGTIKDDFLGVIN 161
            + + P Y T D  V IQ+D E+RLKI+GTRVD  +IF IG++ DD+LG+++
Sbjct: 121 PNSNPPCYKTVDEDVVIQQDDEIRLKIVGTRVDKNDIFAIGSLMDDYLGLVS 172

[Close]

BLAST of Pay0014383 vs. ExPASy Swiss-Prot
Match: P62487 (DNA-directed RNA polymerase II subunit RPB7 OS=Homo sapiens OX=9606 GN=POLR2G PE=1 SV=1)

HSP 1 Score: 183.7 bits (465), Expect = 1.7e-45
Identity = 88/172 (51.16%), Postives = 121/172 (70.35%), Query Frame = 0


Query: 1   MFFHIVLERNMQLHPRHFGRN----------EPYVRTC-GRHGFVVAITGIENIGKGLIR 60
           MF+HI LE  + LHPR+FG N               TC G++GFV+A+T I+NIG G+I+
Sbjct: 1   MFYHISLEHEILLHPRYFGPNLLNTVKQKLFTEVEGTCTGKYGFVIAVTTIDNIGAGVIQ 60

Query: 61  DGTGFVTFPVKYQCVVFRPFKGEILEAVVTMVNKMGFFAEAGPVQIFVSNHLIPDDMEFQ 120
            G GFV +PVKY+ +VFRPFKGE+++AVVT VNK+G F E GP+  F+S H IP +MEF 
Sbjct: 61  PGRGFVLYPVKYKAIVFRPFKGEVVDAVVTQVNKVGLFTEIGPMSCFISRHSIPSEMEFD 120

Query: 121 -SGDVPNYTTSDGSVKIQKDSEVRLKIIGTRVDATEIFCIGTIKDDFLGVIN 161
            + + P Y T D  + IQ+D E+RLKI+GTRVD  +IF IG++ DD+LG+++
Sbjct: 121 PNSNPPCYKTMDEDIVIQQDDEIRLKIVGTRVDKNDIFAIGSLMDDYLGLVS 172

[Close]

BLAST of Pay0014383 vs. ExPASy TrEMBL
Match: A0A0A0KPS4 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G312340 PE=3 SV=1)

HSP 1 Score: 315.8 bits (808), Expect = 1.0e-82
Identity = 160/176 (90.91%), Postives = 161/176 (91.48%), Query Frame = 0


Query: 1   MFFHIVLERNMQLHPRHFGRN----------EPYVRTC-GRHGFVVAITGIENIGKGLIR 60
           MFFHIVLERNMQLHPRHFGRN          +    TC GRHGFVVAITGIENIGKGLIR
Sbjct: 1   MFFHIVLERNMQLHPRHFGRNLRENLVSKLMKDVEGTCSGRHGFVVAITGIENIGKGLIR 60

Query: 61  DGTGFVTFPVKYQCVVFRPFKGEILEAVVTMVNKMGFFAEAGPVQIFVSNHLIPDDMEFQ 120
           DGTGFVTFPVKYQCVVFRPFKGEILEAVVTMVNKMGFFAEAGPVQIFVSNHLIPDDMEFQ
Sbjct: 61  DGTGFVTFPVKYQCVVFRPFKGEILEAVVTMVNKMGFFAEAGPVQIFVSNHLIPDDMEFQ 120

Query: 121 SGDVPNYTTSDGSVKIQKDSEVRLKIIGTRVDATEIFCIGTIKDDFLGVINDPSAA 166
           SGDVPNYTTSDGSVKIQKDSEVRLKIIGTRVDATEIFCIGTIKDDFLGVINDPSAA
Sbjct: 121 SGDVPNYTTSDGSVKIQKDSEVRLKIIGTRVDATEIFCIGTIKDDFLGVINDPSAA 176

[Close]

BLAST of Pay0014383 vs. ExPASy TrEMBL
Match: A0A6J1JSG6 (DNA-directed RNA polymerase II subunit RPB7-like OS=Cucurbita maxima OX=3661 GN=LOC111487136 PE=3 SV=1)

HSP 1 Score: 314.7 bits (805), Expect = 2.3e-82
Identity = 159/176 (90.34%), Postives = 161/176 (91.48%), Query Frame = 0


Query: 1   MFFHIVLERNMQLHPRHFGRN----------EPYVRTC-GRHGFVVAITGIENIGKGLIR 60
           MFFHIVLERNMQLHPRHFGRN          +    TC GRHGFVVAITGIENIGKGLIR
Sbjct: 1   MFFHIVLERNMQLHPRHFGRNLRENLVTKLMKDVEGTCSGRHGFVVAITGIENIGKGLIR 60

Query: 61  DGTGFVTFPVKYQCVVFRPFKGEILEAVVTMVNKMGFFAEAGPVQIFVSNHLIPDDMEFQ 120
           DGTGFVTFPVKYQCVVFRPFKGEILEAVVTMVNKMGFFAEAGPVQIFVSNHLIPDDMEFQ
Sbjct: 61  DGTGFVTFPVKYQCVVFRPFKGEILEAVVTMVNKMGFFAEAGPVQIFVSNHLIPDDMEFQ 120

Query: 121 SGDVPNYTTSDGSVKIQKDSEVRLKIIGTRVDATEIFCIGTIKDDFLGVINDPSAA 166
           SGDVPNYTTSDGSVKIQKDSEVRLKIIGTRVDATEIFCIGTIKDDFLGVINDP+AA
Sbjct: 121 SGDVPNYTTSDGSVKIQKDSEVRLKIIGTRVDATEIFCIGTIKDDFLGVINDPAAA 176

[Close]

BLAST of Pay0014383 vs. ExPASy TrEMBL
Match: A0A6J1E6V3 (DNA-directed RNA polymerase II subunit RPB7-like OS=Cucurbita moschata OX=3662 GN=LOC111431229 PE=3 SV=1)

HSP 1 Score: 314.7 bits (805), Expect = 2.3e-82
Identity = 159/176 (90.34%), Postives = 161/176 (91.48%), Query Frame = 0


Query: 1   MFFHIVLERNMQLHPRHFGRN----------EPYVRTC-GRHGFVVAITGIENIGKGLIR 60
           MFFHIVLERNMQLHPRHFGRN          +    TC GRHGFVVAITGIENIGKGLIR
Sbjct: 1   MFFHIVLERNMQLHPRHFGRNLRENLVTKLMKDVEGTCSGRHGFVVAITGIENIGKGLIR 60

Query: 61  DGTGFVTFPVKYQCVVFRPFKGEILEAVVTMVNKMGFFAEAGPVQIFVSNHLIPDDMEFQ 120
           DGTGFVTFPVKYQCVVFRPFKGEILEAVVTMVNKMGFFAEAGPVQIFVSNHLIPDDMEFQ
Sbjct: 61  DGTGFVTFPVKYQCVVFRPFKGEILEAVVTMVNKMGFFAEAGPVQIFVSNHLIPDDMEFQ 120

Query: 121 SGDVPNYTTSDGSVKIQKDSEVRLKIIGTRVDATEIFCIGTIKDDFLGVINDPSAA 166
           SGDVPNYTTSDGSVKIQKDSEVRLKIIGTRVDATEIFCIGTIKDDFLGVINDP+AA
Sbjct: 121 SGDVPNYTTSDGSVKIQKDSEVRLKIIGTRVDATEIFCIGTIKDDFLGVINDPAAA 176

[Close]

BLAST of Pay0014383 vs. ExPASy TrEMBL
Match: A0A2P5BPN1 (Polyribonucleotide nucleotidyltransferase OS=Parasponia andersonii OX=3476 GN=PanWU01x14_221400 PE=3 SV=1)

HSP 1 Score: 313.5 bits (802), Expect = 5.1e-82
Identity = 158/176 (89.77%), Postives = 161/176 (91.48%), Query Frame = 0


Query: 1   MFFHIVLERNMQLHPRHFGRN----------EPYVRTC-GRHGFVVAITGIENIGKGLIR 60
           MFFHIVLERNMQLHPRHFGRN          +    TC GRHGFVVAITGIENIGKGLIR
Sbjct: 1   MFFHIVLERNMQLHPRHFGRNLRDNIVSKLMKDVEGTCSGRHGFVVAITGIENIGKGLIR 60

Query: 61  DGTGFVTFPVKYQCVVFRPFKGEILEAVVTMVNKMGFFAEAGPVQIFVSNHLIPDDMEFQ 120
           DGTGFVTFPVKYQCVVFRPFKGEILEAVVTMVNKMGFFAEAGPVQIFVSNHLIPDDMEFQ
Sbjct: 61  DGTGFVTFPVKYQCVVFRPFKGEILEAVVTMVNKMGFFAEAGPVQIFVSNHLIPDDMEFQ 120

Query: 121 SGDVPNYTTSDGSVKIQKDSEVRLKIIGTRVDATEIFCIGTIKDDFLGVINDPSAA 166
           SGD+PNYTTSDGSVKIQKDSEVRLKIIGTRVDATEIFCIGTIKDDFLGVINDP+AA
Sbjct: 121 SGDMPNYTTSDGSVKIQKDSEVRLKIIGTRVDATEIFCIGTIKDDFLGVINDPAAA 176

[Close]

BLAST of Pay0014383 vs. ExPASy TrEMBL
Match: A0A2P5BKN9 (Polyribonucleotide nucleotidyltransferase OS=Trema orientale OX=63057 GN=TorRG33x02_317910 PE=3 SV=1)

HSP 1 Score: 313.5 bits (802), Expect = 5.1e-82
Identity = 158/176 (89.77%), Postives = 161/176 (91.48%), Query Frame = 0


Query: 1   MFFHIVLERNMQLHPRHFGRN----------EPYVRTC-GRHGFVVAITGIENIGKGLIR 60
           MFFHIVLERNMQLHPRHFGRN          +    TC GRHGFVVAITGIENIGKGLIR
Sbjct: 1   MFFHIVLERNMQLHPRHFGRNLRDNIVSKLMKDVEGTCSGRHGFVVAITGIENIGKGLIR 60

Query: 61  DGTGFVTFPVKYQCVVFRPFKGEILEAVVTMVNKMGFFAEAGPVQIFVSNHLIPDDMEFQ 120
           DGTGFVTFPVKYQCVVFRPFKGEILEAVVTMVNKMGFFAEAGPVQIFVSNHLIPDDMEFQ
Sbjct: 61  DGTGFVTFPVKYQCVVFRPFKGEILEAVVTMVNKMGFFAEAGPVQIFVSNHLIPDDMEFQ 120

Query: 121 SGDVPNYTTSDGSVKIQKDSEVRLKIIGTRVDATEIFCIGTIKDDFLGVINDPSAA 166
           SGD+PNYTTSDGSVKIQKDSEVRLKIIGTRVDATEIFCIGTIKDDFLGVINDP+AA
Sbjct: 121 SGDMPNYTTSDGSVKIQKDSEVRLKIIGTRVDATEIFCIGTIKDDFLGVINDPAAA 176

[Close]

BLAST of Pay0014383 vs. NCBI nr
Match: XP_038906991.1 (DNA-directed RNA polymerase II subunit RPB7-like [Benincasa hispida])

HSP 1 Score: 315.8 bits (808), Expect = 2.1e-82
Identity = 160/176 (90.91%), Postives = 161/176 (91.48%), Query Frame = 0


Query: 1   MFFHIVLERNMQLHPRHFGRN----------EPYVRTC-GRHGFVVAITGIENIGKGLIR 60
           MFFHIVLERNMQLHPRHFGRN          +    TC GRHGFVVAITGIENIGKGLIR
Sbjct: 1   MFFHIVLERNMQLHPRHFGRNLRDNIVSKLMKDVEGTCSGRHGFVVAITGIENIGKGLIR 60

Query: 61  DGTGFVTFPVKYQCVVFRPFKGEILEAVVTMVNKMGFFAEAGPVQIFVSNHLIPDDMEFQ 120
           DGTGFVTFPVKYQCVVFRPFKGEILEAVVTMVNKMGFFAEAGPVQIFVSNHLIPDDMEFQ
Sbjct: 61  DGTGFVTFPVKYQCVVFRPFKGEILEAVVTMVNKMGFFAEAGPVQIFVSNHLIPDDMEFQ 120

Query: 121 SGDVPNYTTSDGSVKIQKDSEVRLKIIGTRVDATEIFCIGTIKDDFLGVINDPSAA 166
           SGDVPNYTTSDGSVKIQKDSEVRLKIIGTRVDATEIFCIGTIKDDFLGVINDPSAA
Sbjct: 121 SGDVPNYTTSDGSVKIQKDSEVRLKIIGTRVDATEIFCIGTIKDDFLGVINDPSAA 176

[Close]

BLAST of Pay0014383 vs. NCBI nr
Match: XP_038906688.1 (DNA-directed RNA polymerase II subunit RPB7 [Benincasa hispida] >XP_038906689.1 DNA-directed RNA polymerase II subunit RPB7 [Benincasa hispida] >XP_038906690.1 DNA-directed RNA polymerase II subunit RPB7 [Benincasa hispida])

HSP 1 Score: 315.8 bits (808), Expect = 2.1e-82
Identity = 160/176 (90.91%), Postives = 161/176 (91.48%), Query Frame = 0


Query: 1   MFFHIVLERNMQLHPRHFGRN----------EPYVRTC-GRHGFVVAITGIENIGKGLIR 60
           MFFHIVLERNMQLHPRHFGRN          +    TC GRHGFVVAITGIENIGKGLIR
Sbjct: 1   MFFHIVLERNMQLHPRHFGRNLRDNLVSKLMKDVEGTCSGRHGFVVAITGIENIGKGLIR 60

Query: 61  DGTGFVTFPVKYQCVVFRPFKGEILEAVVTMVNKMGFFAEAGPVQIFVSNHLIPDDMEFQ 120
           DGTGFVTFPVKYQCVVFRPFKGEILEAVVTMVNKMGFFAEAGPVQIFVSNHLIPDDMEFQ
Sbjct: 61  DGTGFVTFPVKYQCVVFRPFKGEILEAVVTMVNKMGFFAEAGPVQIFVSNHLIPDDMEFQ 120

Query: 121 SGDVPNYTTSDGSVKIQKDSEVRLKIIGTRVDATEIFCIGTIKDDFLGVINDPSAA 166
           SGDVPNYTTSDGSVKIQKDSEVRLKIIGTRVDATEIFCIGTIKDDFLGVINDPSAA
Sbjct: 121 SGDVPNYTTSDGSVKIQKDSEVRLKIIGTRVDATEIFCIGTIKDDFLGVINDPSAA 176

[Close]

BLAST of Pay0014383 vs. NCBI nr
Match: XP_004150740.1 (DNA-directed RNA polymerase II subunit RPB7 isoform X1 [Cucumis sativus] >XP_011655125.1 DNA-directed RNA polymerase II subunit RPB7 isoform X1 [Cucumis sativus] >XP_031742310.1 DNA-directed RNA polymerase II subunit RPB7 isoform X1 [Cucumis sativus] >KGN50884.1 hypothetical protein Csa_023096 [Cucumis sativus])

HSP 1 Score: 315.8 bits (808), Expect = 2.1e-82
Identity = 160/176 (90.91%), Postives = 161/176 (91.48%), Query Frame = 0


Query: 1   MFFHIVLERNMQLHPRHFGRN----------EPYVRTC-GRHGFVVAITGIENIGKGLIR 60
           MFFHIVLERNMQLHPRHFGRN          +    TC GRHGFVVAITGIENIGKGLIR
Sbjct: 1   MFFHIVLERNMQLHPRHFGRNLRENLVSKLMKDVEGTCSGRHGFVVAITGIENIGKGLIR 60

Query: 61  DGTGFVTFPVKYQCVVFRPFKGEILEAVVTMVNKMGFFAEAGPVQIFVSNHLIPDDMEFQ 120
           DGTGFVTFPVKYQCVVFRPFKGEILEAVVTMVNKMGFFAEAGPVQIFVSNHLIPDDMEFQ
Sbjct: 61  DGTGFVTFPVKYQCVVFRPFKGEILEAVVTMVNKMGFFAEAGPVQIFVSNHLIPDDMEFQ 120

Query: 121 SGDVPNYTTSDGSVKIQKDSEVRLKIIGTRVDATEIFCIGTIKDDFLGVINDPSAA 166
           SGDVPNYTTSDGSVKIQKDSEVRLKIIGTRVDATEIFCIGTIKDDFLGVINDPSAA
Sbjct: 121 SGDVPNYTTSDGSVKIQKDSEVRLKIIGTRVDATEIFCIGTIKDDFLGVINDPSAA 176

[Close]

BLAST of Pay0014383 vs. NCBI nr
Match: KAG7032688.1 (hypothetical protein SDJN02_06738, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 314.7 bits (805), Expect = 4.8e-82
Identity = 159/176 (90.34%), Postives = 161/176 (91.48%), Query Frame = 0


Query: 1   MFFHIVLERNMQLHPRHFGRN----------EPYVRTC-GRHGFVVAITGIENIGKGLIR 60
           MFFHIVLERNMQLHPRHFGRN          +    TC GRHGFVVAITGIENIGKGLIR
Sbjct: 6   MFFHIVLERNMQLHPRHFGRNLRENLVTKLMKDVEGTCSGRHGFVVAITGIENIGKGLIR 65

Query: 61  DGTGFVTFPVKYQCVVFRPFKGEILEAVVTMVNKMGFFAEAGPVQIFVSNHLIPDDMEFQ 120
           DGTGFVTFPVKYQCVVFRPFKGEILEAVVTMVNKMGFFAEAGPVQIFVSNHLIPDDMEFQ
Sbjct: 66  DGTGFVTFPVKYQCVVFRPFKGEILEAVVTMVNKMGFFAEAGPVQIFVSNHLIPDDMEFQ 125

Query: 121 SGDVPNYTTSDGSVKIQKDSEVRLKIIGTRVDATEIFCIGTIKDDFLGVINDPSAA 166
           SGDVPNYTTSDGSVKIQKDSEVRLKIIGTRVDATEIFCIGTIKDDFLGVINDP+AA
Sbjct: 126 SGDVPNYTTSDGSVKIQKDSEVRLKIIGTRVDATEIFCIGTIKDDFLGVINDPAAA 181

[Close]

BLAST of Pay0014383 vs. NCBI nr
Match: XP_022923594.1 (DNA-directed RNA polymerase II subunit RPB7-like [Cucurbita moschata] >XP_022923602.1 DNA-directed RNA polymerase II subunit RPB7-like [Cucurbita moschata] >XP_022990163.1 DNA-directed RNA polymerase II subunit RPB7-like [Cucurbita maxima] >XP_022990164.1 DNA-directed RNA polymerase II subunit RPB7-like [Cucurbita maxima] >XP_023525602.1 DNA-directed RNA polymerase II subunit RPB7-like [Cucurbita pepo subsp. pepo] >KAG6601991.1 hypothetical protein SDJN03_07224, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 314.7 bits (805), Expect = 4.8e-82
Identity = 159/176 (90.34%), Postives = 161/176 (91.48%), Query Frame = 0


Query: 1   MFFHIVLERNMQLHPRHFGRN----------EPYVRTC-GRHGFVVAITGIENIGKGLIR 60
           MFFHIVLERNMQLHPRHFGRN          +    TC GRHGFVVAITGIENIGKGLIR
Sbjct: 1   MFFHIVLERNMQLHPRHFGRNLRENLVTKLMKDVEGTCSGRHGFVVAITGIENIGKGLIR 60

Query: 61  DGTGFVTFPVKYQCVVFRPFKGEILEAVVTMVNKMGFFAEAGPVQIFVSNHLIPDDMEFQ 120
           DGTGFVTFPVKYQCVVFRPFKGEILEAVVTMVNKMGFFAEAGPVQIFVSNHLIPDDMEFQ
Sbjct: 61  DGTGFVTFPVKYQCVVFRPFKGEILEAVVTMVNKMGFFAEAGPVQIFVSNHLIPDDMEFQ 120

Query: 121 SGDVPNYTTSDGSVKIQKDSEVRLKIIGTRVDATEIFCIGTIKDDFLGVINDPSAA 166
           SGDVPNYTTSDGSVKIQKDSEVRLKIIGTRVDATEIFCIGTIKDDFLGVINDP+AA
Sbjct: 121 SGDVPNYTTSDGSVKIQKDSEVRLKIIGTRVDATEIFCIGTIKDDFLGVINDPAAA 176

[Close]

BLAST of Pay0014383 vs. TAIR 10
Match: AT5G59180.1 (DNA-directed RNA polymerase II )

HSP 1 Score: 295.8 bits (756), Expect = 2.1e-80
Identity = 148/176 (84.09%), Postives = 156/176 (88.64%), Query Frame = 0


Query: 1   MFFHIVLERNMQLHPRHFGRN----------EPYVRTC-GRHGFVVAITGIENIGKGLIR 60
           MFFHIVLERNMQLHPR FGRN          +    TC GRHGFVVAITGI+ IGKGLIR
Sbjct: 1   MFFHIVLERNMQLHPRFFGRNLKENLVSKLMKDVEGTCSGRHGFVVAITGIDTIGKGLIR 60

Query: 61  DGTGFVTFPVKYQCVVFRPFKGEILEAVVTMVNKMGFFAEAGPVQIFVSNHLIPDDMEFQ 120
           DGTGFVTFPVKYQCVVFRPFKGEILEAVVT+VNKMGFFAEAGPVQIFVS HLIPDDMEFQ
Sbjct: 61  DGTGFVTFPVKYQCVVFRPFKGEILEAVVTLVNKMGFFAEAGPVQIFVSKHLIPDDMEFQ 120

Query: 121 SGDVPNYTTSDGSVKIQKDSEVRLKIIGTRVDATEIFCIGTIKDDFLGVINDPSAA 166
           +GD+PNYTTSDGSVKIQK+ EVRLKIIGTRVDAT IFC+GTIKDDFLGVINDP+AA
Sbjct: 121 AGDMPNYTTSDGSVKIQKECEVRLKIIGTRVDATAIFCVGTIKDDFLGVINDPAAA 176

[Close]

BLAST of Pay0014383 vs. TAIR 10
Match: AT3G22900.1 (RNA polymerase Rpb7-like, N-terminal domain )

HSP 1 Score: 77.0 bits (188), Expect = 1.6e-14
Identity = 44/128 (34.38%), Postives = 71/128 (55.47%), Query Frame = 0


Query: 32  GFVVAITGIENIGKGLIRDGTGFVTFPVKYQCVVFRPFKGEILEAVVTMVNKMGFFAEAG 91
           G+++  T +ENIG+G I++ TG + FPV +  + F+ FKGEI+  VV  V+K G F ++G
Sbjct: 46  GYLITPTILENIGEGKIKEQTGEIQFPVVFNGICFKMFKGEIVHGVVHKVHKTGVFLKSG 105

Query: 92  PVQIFVSNHLIPDDMEFQSGDVPNYTTSDGSVKIQKDSEVRLKIIGT--RVDATEIFCIG 151
           P +I   +H+     EF  G+ P +     S +IQ  + VR  ++ T  R    +   + 
Sbjct: 106 PYEIIYLSHMKMPGYEFIPGENPFFMNQYMS-RIQIGARVRFVVLDTEWREAEKDFMALA 165

Query: 152 TIKDDFLG 158
           +I  D LG
Sbjct: 166 SIDGDNLG 172

[Close]

BLAST of Pay0014383 vs. TAIR 10
Match: AT4G14660.1 (RNA polymerase Rpb7-like, N-terminal domain )

HSP 1 Score: 77.0 bits (188), Expect = 1.6e-14
Identity = 43/132 (32.58%), Postives = 75/132 (56.82%), Query Frame = 0


Query: 32  GFVVAITGIENIGKGLIRDGTGFVTFPVKYQCVVFRPFKGEILEAVVTMVNKMGFFAEAG 91
           G+ VA+T ++ IG+G IR+ TG V FPV +  + F+ FKGEI+  VV  V K G F   G
Sbjct: 47  GYYVAVTTLDKIGEGKIREHTGEVLFPVMFSGMTFKIFKGEIIHGVVHKVLKHGVFMRCG 106

Query: 92  PVQIFVSNHLIPDDMEFQSGDVPNYTTSDGSVKIQKDSEVRLKIIGTR--VDATEIFCIG 151
           P++    ++    D ++  G+ P +     S +IQ ++ VR+ +IG +      E   + 
Sbjct: 107 PIENVYLSYTKMPDYKYIPGENPIFMNEKTS-RIQVETTVRVVVIGIKWMEVEREFQALA 166

Query: 152 TIKDDFLGVIND 162
           +++ D+LG +++
Sbjct: 167 SLEGDYLGPLSE 177

The following BLAST results are available for this feature:

BLAST of Pay0014383 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P46279	7.6e-83	88.51	DNA-directed RNA polymerase II subunit RPB7 OS=Glycine max OX=3847 PE=2 SV=1	[more]
P38421	3.0e-79	84.09	DNA-directed RNA polymerase II subunit 7 OS=Arabidopsis thaliana OX=3702 GN=NRPB...	[more]
Q5E9B8	1.7e-45	51.16	DNA-directed RNA polymerase II subunit RPB7 OS=Bos taurus OX=9913 GN=POLR2G PE=1...	[more]
Q7ZW41	1.7e-45	51.74	DNA-directed RNA polymerase II subunit RPB7 OS=Danio rerio OX=7955 GN=polr2g PE=...	[more]
P62487	1.7e-45	51.16	DNA-directed RNA polymerase II subunit RPB7 OS=Homo sapiens OX=9606 GN=POLR2G PE...	[more]

BLAST of Pay0014383 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KPS4	1.0e-82	90.91	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G312340 PE=3 SV=1	[more]
A0A6J1JSG6	2.3e-82	90.34	DNA-directed RNA polymerase II subunit RPB7-like OS=Cucurbita maxima OX=3661 GN=...	[more]
A0A6J1E6V3	2.3e-82	90.34	DNA-directed RNA polymerase II subunit RPB7-like OS=Cucurbita moschata OX=3662 G...	[more]
A0A2P5BPN1	5.1e-82	89.77	Polyribonucleotide nucleotidyltransferase OS=Parasponia andersonii OX=3476 GN=Pa...	[more]
A0A2P5BKN9	5.1e-82	89.77	Polyribonucleotide nucleotidyltransferase OS=Trema orientale OX=63057 GN=TorRG33...	[more]

BLAST of Pay0014383 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038906991.1	2.1e-82	90.91	DNA-directed RNA polymerase II subunit RPB7-like [Benincasa hispida]	[more]
XP_038906688.1	2.1e-82	90.91	DNA-directed RNA polymerase II subunit RPB7 [Benincasa hispida] >XP_038906689.1 ...	[more]
XP_004150740.1	2.1e-82	90.91	DNA-directed RNA polymerase II subunit RPB7 isoform X1 [Cucumis sativus] >XP_011...	[more]
KAG7032688.1	4.8e-82	90.34	hypothetical protein SDJN02_06738, partial [Cucurbita argyrosperma subsp. argyro...	[more]
XP_022923594.1	4.8e-82	90.34	DNA-directed RNA polymerase II subunit RPB7-like [Cucurbita moschata] >XP_022923...	[more]

BLAST of Pay0014383 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G59180.1	2.1e-80	84.09	DNA-directed RNA polymerase II	[more]
AT3G22900.1	1.6e-14	34.38	RNA polymerase Rpb7-like, N-terminal domain	[more]
AT4G14660.1	1.6e-14	32.58	RNA polymerase Rpb7-like, N-terminal domain	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (Payzawat) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR003029	S1 domain	PFAM	PF00575	S1	coord: 67..145 e-value: 1.2E-16 score: 60.8
None	No IPR available	GENE3D	2.40.50.140		coord: 70..160 e-value: 5.9E-37 score: 127.6
None	No IPR available	PANTHER	PTHR12709:SF8	BNAA10G12180D PROTEIN	coord: 1..165
None	No IPR available	CDD	cd04462	S1_RNAPII_Rpb7	coord: 70..157 e-value: 8.59322E-46 score: 143.17
None	No IPR available	CDD	cd04329	RNAP_II_Rpb7_N	coord: 2..70 e-value: 1.30639E-26 score: 94.1711
IPR036898	RNA polymerase Rpb7-like, N-terminal domain superfamily	GENE3D	3.30.1490.120		coord: 1..69 e-value: 2.2E-14 score: 55.5
IPR036898	RNA polymerase Rpb7-like, N-terminal domain superfamily	SUPERFAMILY	88798	N-terminal, heterodimerisation domain of RBP7 (RpoE)	coord: 1..67
IPR045113	RNA polymerase Rpb7-like	PANTHER	PTHR12709	DNA-DIRECTED RNA POLYMERASE II, III	coord: 1..165
IPR012340	Nucleic acid-binding, OB-fold	SUPERFAMILY	50249	Nucleic acid-binding proteins	coord: 68..158

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Pay0014383.1	Pay0014383.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0000291	nuclear-transcribed mRNA catabolic process, exonucleolytic
biological_process	GO:0060213	positive regulation of nuclear-transcribed mRNA poly(A) tail shortening
biological_process	GO:0045948	positive regulation of translational initiation
biological_process	GO:0006367	transcription initiation from RNA polymerase II promoter
biological_process	GO:0006352	DNA-templated transcription, initiation
cellular_component	GO:0000932	P-body
cellular_component	GO:0005665	RNA polymerase II, core complex
molecular_function	GO:0003899	DNA-directed 5'-3' RNA polymerase activity
molecular_function	GO:0003697	single-stranded DNA binding
molecular_function	GO:0003727	single-stranded RNA binding
molecular_function	GO:0031369	translation initiation factor binding
molecular_function	GO:0003676	nucleic acid binding