Pay0014315 (gene) Melon (Payzawat) v1

Overview
NamePay0014315
Typegene
OrganismCucumis melo L. var. inodorus cv. Payzawat (Melon (Payzawat) v1)
DescriptionReverse transcriptase
Locationchr02: 8503797 .. 8504351 (+)
RNA-Seq ExpressionPay0014315
SyntenyPay0014315
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexonpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCAGGTGTTGTAGATCTCTTATATGTTGAGATGAGGTTGGGTGAGCAAATAATGTTAGGCCCTAAGTTAGGTCATATCACAATTGCAGCCATACAAAAGATTAGAGCTCGTATGTTGACAGCGCAGAGCAAACAGAAGAGTTATGCTGATGAACGACGTAAGGATCTAAAGTTTGTTGTGGGAGACATGGTTTTTCTAAAGGTAACACCTATGAAGGGTGTTTTGAGGTTCGAGAAGAAGGGGAAGTTAAGTCCATGTTTTGTAGAGTCATTTAAGATACTTGAGCGAATTGGCTCTGTAGCATGTCGTTTGGCGTTGCCTCCATCGTTTTCTACAGTTTATGATGTGTTCCACGTCTCTATGCTGAGGAAGTATGTGGCAAATCTGACACATGTAGTTGACTTTGAACCATTGCAGATTAATGAGAACATGAGTTTTGAGGAGCAACCCGTTGAGATTTTGGCAAGAGAGGTCAAGATGCTTCGCAATAGAAGAATTGTGCTGGTCAAAGTTCTTTGTCGAAACCACGAGTTGAAGAGGCTACATGGGTGA

mRNA sequence

ATGGCAGGTGTTGTAGATCTCTTATATGTTGAGATGAGGTTGGGTGAGCAAATAATGTTAGGCCCTAAGTTAGGTCATATCACAATTGCAGCCATACAAAAGATTAGAGCTCGTATGTTGACAGCGCAGAGCAAACAGAAGAGTTATGCTGATGAACGACGTAAGGATCTAAAGTTTGTTGTGGGAGACATGGTTTTTCTAAAGGTAACACCTATGAAGGGTGTTTTGAGGTTCGAGAAGAAGGGGAAGTTAAGTCCATGTTTTGTAGAGTCATTTAAGATACTTGAGCGAATTGGCTCTGTAGCATGTCGTTTGGCGTTGCCTCCATCGTTTTCTACAGTTTATGATGTGTTCCACGTCTCTATGCTGAGGAAGTATGTGGCAAATCTGACACATGTAGTTGACTTTGAACCATTGCAGATTAATGAGAACATGAGTTTTGAGGAGCAACCCGTTGAGATTTTGGCAAGAGAGGTCAAGATGCTTCGCAATAGAAGAATTGTGCTGGTCAAAGTTCTTTGTCGAAACCACGAGTTGAAGAGGCTACATGGGTGA

Coding sequence (CDS)

ATGGCAGGTGTTGTAGATCTCTTATATGTTGAGATGAGGTTGGGTGAGCAAATAATGTTAGGCCCTAAGTTAGGTCATATCACAATTGCAGCCATACAAAAGATTAGAGCTCGTATGTTGACAGCGCAGAGCAAACAGAAGAGTTATGCTGATGAACGACGTAAGGATCTAAAGTTTGTTGTGGGAGACATGGTTTTTCTAAAGGTAACACCTATGAAGGGTGTTTTGAGGTTCGAGAAGAAGGGGAAGTTAAGTCCATGTTTTGTAGAGTCATTTAAGATACTTGAGCGAATTGGCTCTGTAGCATGTCGTTTGGCGTTGCCTCCATCGTTTTCTACAGTTTATGATGTGTTCCACGTCTCTATGCTGAGGAAGTATGTGGCAAATCTGACACATGTAGTTGACTTTGAACCATTGCAGATTAATGAGAACATGAGTTTTGAGGAGCAACCCGTTGAGATTTTGGCAAGAGAGGTCAAGATGCTTCGCAATAGAAGAATTGTGCTGGTCAAAGTTCTTTGTCGAAACCACGAGTTGAAGAGGCTACATGGGTGA

Protein sequence

MAGVVDLLYVEMRLGEQIMLGPKLGHITIAAIQKIRARMLTAQSKQKSYADERRKDLKFVVGDMVFLKVTPMKGVLRFEKKGKLSPCFVESFKILERIGSVACRLALPPSFSTVYDVFHVSMLRKYVANLTHVVDFEPLQINENMSFEEQPVEILAREVKMLRNRRIVLVKVLCRNHELKRLHG
Homology
BLAST of Pay0014315 vs. ExPASy TrEMBL
Match: A0A1S3BPB9 (uncharacterized protein LOC103492060 OS=Cucumis melo OX=3656 GN=LOC103492060 PE=4 SV=1)

HSP 1 Score: 356.3 bits (913), Expect = 7.7e-95
Identity = 184/184 (100.00%), Postives = 184/184 (100.00%), Query Frame = 0

Query: 1   MAGVVDLLYVEMRLGEQIMLGPKLGHITIAAIQKIRARMLTAQSKQKSYADERRKDLKFV 60
           MAGVVDLLYVEMRLGEQIMLGPKLGHITIAAIQKIRARMLTAQSKQKSYADERRKDLKFV
Sbjct: 1   MAGVVDLLYVEMRLGEQIMLGPKLGHITIAAIQKIRARMLTAQSKQKSYADERRKDLKFV 60

Query: 61  VGDMVFLKVTPMKGVLRFEKKGKLSPCFVESFKILERIGSVACRLALPPSFSTVYDVFHV 120
           VGDMVFLKVTPMKGVLRFEKKGKLSPCFVESFKILERIGSVACRLALPPSFSTVYDVFHV
Sbjct: 61  VGDMVFLKVTPMKGVLRFEKKGKLSPCFVESFKILERIGSVACRLALPPSFSTVYDVFHV 120

Query: 121 SMLRKYVANLTHVVDFEPLQINENMSFEEQPVEILAREVKMLRNRRIVLVKVLCRNHELK 180
           SMLRKYVANLTHVVDFEPLQINENMSFEEQPVEILAREVKMLRNRRIVLVKVLCRNHELK
Sbjct: 121 SMLRKYVANLTHVVDFEPLQINENMSFEEQPVEILAREVKMLRNRRIVLVKVLCRNHELK 180

Query: 181 RLHG 185
           RLHG
Sbjct: 181 RLHG 184

BLAST of Pay0014315 vs. ExPASy TrEMBL
Match: A0A5A7TF93 (Pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold2228G00140 PE=4 SV=1)

HSP 1 Score: 350.9 bits (899), Expect = 3.2e-93
Identity = 182/183 (99.45%), Postives = 182/183 (99.45%), Query Frame = 0

Query: 2   AGVVDLLYVEMRLGEQIMLGPKLGHITIAAIQKIRARMLTAQSKQKSYADERRKDLKFVV 61
           A VVDLLYVEMRLGEQIMLGPKLGHITIAAIQKIRARMLTAQSKQKSYADERRKDLKFVV
Sbjct: 65  ACVVDLLYVEMRLGEQIMLGPKLGHITIAAIQKIRARMLTAQSKQKSYADERRKDLKFVV 124

Query: 62  GDMVFLKVTPMKGVLRFEKKGKLSPCFVESFKILERIGSVACRLALPPSFSTVYDVFHVS 121
           GDMVFLKVTPMKGVLRFEKKGKLSPCFVESFKILERIGSVACRLALPPSFSTVYDVFHVS
Sbjct: 125 GDMVFLKVTPMKGVLRFEKKGKLSPCFVESFKILERIGSVACRLALPPSFSTVYDVFHVS 184

Query: 122 MLRKYVANLTHVVDFEPLQINENMSFEEQPVEILAREVKMLRNRRIVLVKVLCRNHELKR 181
           MLRKYVANLTHVVDFEPLQINENMSFEEQPVEILAREVKMLRNRRIVLVKVLCRNHELKR
Sbjct: 185 MLRKYVANLTHVVDFEPLQINENMSFEEQPVEILAREVKMLRNRRIVLVKVLCRNHELKR 244

Query: 182 LHG 185
           LHG
Sbjct: 245 LHG 247

BLAST of Pay0014315 vs. ExPASy TrEMBL
Match: A0A5D3CC37 (Pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1933G00250 PE=4 SV=1)

HSP 1 Score: 260.4 bits (664), Expect = 5.7e-66
Identity = 145/183 (79.23%), Postives = 146/183 (79.78%), Query Frame = 0

Query: 2   AGVVDLLYVEMRLGEQIMLGPKLGHITIAAIQKIRARMLTAQSKQKSYADERRKDLKFVV 61
           A VVDLLYVEMRLGEQIMLGPKLGHITIAAIQKIRARMLTAQSKQKSYADER        
Sbjct: 79  ACVVDLLYVEMRLGEQIMLGPKLGHITIAAIQKIRARMLTAQSKQKSYADER-------- 138

Query: 62  GDMVFLKVTPMKGVLRFEKKGKLSPCFVESFKILERIGSVACRLALPPSFSTVYDVFHVS 121
                                       +SFKILERIGSVACRLALPPSFSTVYDVFHVS
Sbjct: 139 ----------------------------QSFKILERIGSVACRLALPPSFSTVYDVFHVS 198

Query: 122 MLRKYVANLTHVVDFEPLQINENMSFEEQPVEILAREVKMLRNRRIVLVKVLCRNHELKR 181
           MLRKYVANLTHVVDFEPLQINENMSFEEQPVEILAREVKMLRNRRIVLVKVLCRNHELKR
Sbjct: 199 MLRKYVANLTHVVDFEPLQINENMSFEEQPVEILAREVKMLRNRRIVLVKVLCRNHELKR 225

Query: 182 LHG 185
           LHG
Sbjct: 259 LHG 225

BLAST of Pay0014315 vs. ExPASy TrEMBL
Match: A0A5A7TV58 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1810G00130 PE=4 SV=1)

HSP 1 Score: 254.2 bits (648), Expect = 4.1e-64
Identity = 135/167 (80.84%), Postives = 149/167 (89.22%), Query Frame = 0

Query: 14   LGEQIMLGPKLGHITIAAIQKIRARMLTAQSKQKSYADERRKDLKFVVGDMVFLKVTPMK 73
            +GEQ MLGP+L   T AAIQKIRARM T QSKQKSYADERRKDL+F VGDMVFLKV PMK
Sbjct: 852  VGEQRMLGPELVQTTNAAIQKIRARMFTTQSKQKSYADERRKDLEFEVGDMVFLKVAPMK 911

Query: 74   GVLRFEKKGKLSPCFVESFKILERIGSVACRLALPPSFSTVYDVFHVSMLRKYVANLTHV 133
            GVLRF+KKGKLSP FV  F+ILERIGSVA  LALPPSFS V+DVFHVSMLR+YVA+LTHV
Sbjct: 912  GVLRFQKKGKLSPQFVGPFEILERIGSVAYCLALPPSFSAVHDVFHVSMLRRYVADLTHV 971

Query: 134  VDFEPLQINENMSFEEQPVEILAREVKMLRNRRIVLVKVLCRNHELK 181
            VDF+PLQINENMS++EQPVEILAREVKMLRNR I LVKVL RNH+++
Sbjct: 972  VDFKPLQINENMSYKEQPVEILAREVKMLRNRGISLVKVLWRNHKVE 1018

BLAST of Pay0014315 vs. ExPASy TrEMBL
Match: A0A5D3E202 (Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold208G00040 PE=4 SV=1)

HSP 1 Score: 248.8 bits (634), Expect = 1.7e-62
Identity = 133/164 (81.10%), Postives = 144/164 (87.80%), Query Frame = 0

Query: 14  LGEQIMLGPKLGHITIAAIQKIRARMLTAQSKQKSYADERRKDLKFVVGDMVFLKVTPMK 73
           +GEQ MLGP+L   T  AIQKIRARMLTAQS+QKSYADERRKDL+F VGDMVFLKV PMK
Sbjct: 588 VGEQRMLGPELVQTTNVAIQKIRARMLTAQSRQKSYADERRKDLEFDVGDMVFLKVAPMK 647

Query: 74  GVLRFEKKGKLSPCFVESFKILERIGSVACRLALPPSFSTVYDVFHVSMLRKYVANLTHV 133
           G LRFEKKGKLSP FV  F+ILERIG VA RLALPPSFS V+DVFHVSMLR+YVA+ THV
Sbjct: 648 GFLRFEKKGKLSPRFVGPFEILERIGPVAYRLALPPSFSAVHDVFHVSMLRRYVADPTHV 707

Query: 134 VDFEPLQINENMSFEEQPVEILAREVKMLRNRRIVLVKVLCRNH 178
           V FEPLQINE++S+EEQPVEILAREVKMLRNR I LVKVL RNH
Sbjct: 708 VAFEPLQINEDLSYEEQPVEILAREVKMLRNRHISLVKVLWRNH 751

BLAST of Pay0014315 vs. NCBI nr
Match: XP_008450467.1 (PREDICTED: uncharacterized protein LOC103492060 [Cucumis melo])

HSP 1 Score: 356.3 bits (913), Expect = 1.6e-94
Identity = 184/184 (100.00%), Postives = 184/184 (100.00%), Query Frame = 0

Query: 1   MAGVVDLLYVEMRLGEQIMLGPKLGHITIAAIQKIRARMLTAQSKQKSYADERRKDLKFV 60
           MAGVVDLLYVEMRLGEQIMLGPKLGHITIAAIQKIRARMLTAQSKQKSYADERRKDLKFV
Sbjct: 1   MAGVVDLLYVEMRLGEQIMLGPKLGHITIAAIQKIRARMLTAQSKQKSYADERRKDLKFV 60

Query: 61  VGDMVFLKVTPMKGVLRFEKKGKLSPCFVESFKILERIGSVACRLALPPSFSTVYDVFHV 120
           VGDMVFLKVTPMKGVLRFEKKGKLSPCFVESFKILERIGSVACRLALPPSFSTVYDVFHV
Sbjct: 61  VGDMVFLKVTPMKGVLRFEKKGKLSPCFVESFKILERIGSVACRLALPPSFSTVYDVFHV 120

Query: 121 SMLRKYVANLTHVVDFEPLQINENMSFEEQPVEILAREVKMLRNRRIVLVKVLCRNHELK 180
           SMLRKYVANLTHVVDFEPLQINENMSFEEQPVEILAREVKMLRNRRIVLVKVLCRNHELK
Sbjct: 121 SMLRKYVANLTHVVDFEPLQINENMSFEEQPVEILAREVKMLRNRRIVLVKVLCRNHELK 180

Query: 181 RLHG 185
           RLHG
Sbjct: 181 RLHG 184

BLAST of Pay0014315 vs. NCBI nr
Match: KAA0040217.1 (pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 350.9 bits (899), Expect = 6.7e-93
Identity = 182/183 (99.45%), Postives = 182/183 (99.45%), Query Frame = 0

Query: 2   AGVVDLLYVEMRLGEQIMLGPKLGHITIAAIQKIRARMLTAQSKQKSYADERRKDLKFVV 61
           A VVDLLYVEMRLGEQIMLGPKLGHITIAAIQKIRARMLTAQSKQKSYADERRKDLKFVV
Sbjct: 65  ACVVDLLYVEMRLGEQIMLGPKLGHITIAAIQKIRARMLTAQSKQKSYADERRKDLKFVV 124

Query: 62  GDMVFLKVTPMKGVLRFEKKGKLSPCFVESFKILERIGSVACRLALPPSFSTVYDVFHVS 121
           GDMVFLKVTPMKGVLRFEKKGKLSPCFVESFKILERIGSVACRLALPPSFSTVYDVFHVS
Sbjct: 125 GDMVFLKVTPMKGVLRFEKKGKLSPCFVESFKILERIGSVACRLALPPSFSTVYDVFHVS 184

Query: 122 MLRKYVANLTHVVDFEPLQINENMSFEEQPVEILAREVKMLRNRRIVLVKVLCRNHELKR 181
           MLRKYVANLTHVVDFEPLQINENMSFEEQPVEILAREVKMLRNRRIVLVKVLCRNHELKR
Sbjct: 185 MLRKYVANLTHVVDFEPLQINENMSFEEQPVEILAREVKMLRNRRIVLVKVLCRNHELKR 244

Query: 182 LHG 185
           LHG
Sbjct: 245 LHG 247

BLAST of Pay0014315 vs. NCBI nr
Match: TYK07879.1 (pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 260.4 bits (664), Expect = 1.2e-65
Identity = 145/183 (79.23%), Postives = 146/183 (79.78%), Query Frame = 0

Query: 2   AGVVDLLYVEMRLGEQIMLGPKLGHITIAAIQKIRARMLTAQSKQKSYADERRKDLKFVV 61
           A VVDLLYVEMRLGEQIMLGPKLGHITIAAIQKIRARMLTAQSKQKSYADER        
Sbjct: 79  ACVVDLLYVEMRLGEQIMLGPKLGHITIAAIQKIRARMLTAQSKQKSYADER-------- 138

Query: 62  GDMVFLKVTPMKGVLRFEKKGKLSPCFVESFKILERIGSVACRLALPPSFSTVYDVFHVS 121
                                       +SFKILERIGSVACRLALPPSFSTVYDVFHVS
Sbjct: 139 ----------------------------QSFKILERIGSVACRLALPPSFSTVYDVFHVS 198

Query: 122 MLRKYVANLTHVVDFEPLQINENMSFEEQPVEILAREVKMLRNRRIVLVKVLCRNHELKR 181
           MLRKYVANLTHVVDFEPLQINENMSFEEQPVEILAREVKMLRNRRIVLVKVLCRNHELKR
Sbjct: 199 MLRKYVANLTHVVDFEPLQINENMSFEEQPVEILAREVKMLRNRRIVLVKVLCRNHELKR 225

Query: 182 LHG 185
           LHG
Sbjct: 259 LHG 225

BLAST of Pay0014315 vs. NCBI nr
Match: KAA0045265.1 (ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa] >TYK28691.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 254.2 bits (648), Expect = 8.5e-64
Identity = 135/167 (80.84%), Postives = 149/167 (89.22%), Query Frame = 0

Query: 14   LGEQIMLGPKLGHITIAAIQKIRARMLTAQSKQKSYADERRKDLKFVVGDMVFLKVTPMK 73
            +GEQ MLGP+L   T AAIQKIRARM T QSKQKSYADERRKDL+F VGDMVFLKV PMK
Sbjct: 852  VGEQRMLGPELVQTTNAAIQKIRARMFTTQSKQKSYADERRKDLEFEVGDMVFLKVAPMK 911

Query: 74   GVLRFEKKGKLSPCFVESFKILERIGSVACRLALPPSFSTVYDVFHVSMLRKYVANLTHV 133
            GVLRF+KKGKLSP FV  F+ILERIGSVA  LALPPSFS V+DVFHVSMLR+YVA+LTHV
Sbjct: 912  GVLRFQKKGKLSPQFVGPFEILERIGSVAYCLALPPSFSAVHDVFHVSMLRRYVADLTHV 971

Query: 134  VDFEPLQINENMSFEEQPVEILAREVKMLRNRRIVLVKVLCRNHELK 181
            VDF+PLQINENMS++EQPVEILAREVKMLRNR I LVKVL RNH+++
Sbjct: 972  VDFKPLQINENMSYKEQPVEILAREVKMLRNRGISLVKVLWRNHKVE 1018

BLAST of Pay0014315 vs. NCBI nr
Match: TYK29789.1 (ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 248.8 bits (634), Expect = 3.6e-62
Identity = 133/164 (81.10%), Postives = 144/164 (87.80%), Query Frame = 0

Query: 14  LGEQIMLGPKLGHITIAAIQKIRARMLTAQSKQKSYADERRKDLKFVVGDMVFLKVTPMK 73
           +GEQ MLGP+L   T  AIQKIRARMLTAQS+QKSYADERRKDL+F VGDMVFLKV PMK
Sbjct: 588 VGEQRMLGPELVQTTNVAIQKIRARMLTAQSRQKSYADERRKDLEFDVGDMVFLKVAPMK 647

Query: 74  GVLRFEKKGKLSPCFVESFKILERIGSVACRLALPPSFSTVYDVFHVSMLRKYVANLTHV 133
           G LRFEKKGKLSP FV  F+ILERIG VA RLALPPSFS V+DVFHVSMLR+YVA+ THV
Sbjct: 648 GFLRFEKKGKLSPRFVGPFEILERIGPVAYRLALPPSFSAVHDVFHVSMLRRYVADPTHV 707

Query: 134 VDFEPLQINENMSFEEQPVEILAREVKMLRNRRIVLVKVLCRNH 178
           V FEPLQINE++S+EEQPVEILAREVKMLRNR I LVKVL RNH
Sbjct: 708 VAFEPLQINEDLSYEEQPVEILAREVKMLRNRHISLVKVLWRNH 751

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A1S3BPB97.7e-95100.00uncharacterized protein LOC103492060 OS=Cucumis melo OX=3656 GN=LOC103492060 PE=... [more]
A0A5A7TF933.2e-9399.45Pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold2228G00140 P... [more]
A0A5D3CC375.7e-6679.23Pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1933G00250 P... [more]
A0A5A7TV584.1e-6480.84Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold18... [more]
A0A5D3E2021.7e-6281.10Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E567... [more]
Match NameE-valueIdentityDescription
XP_008450467.11.6e-94100.00PREDICTED: uncharacterized protein LOC103492060 [Cucumis melo][more]
KAA0040217.16.7e-9399.45pol protein [Cucumis melo var. makuwa][more]
TYK07879.11.2e-6579.23pol protein [Cucumis melo var. makuwa][more]
KAA0045265.18.5e-6480.84ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa] >TYK28691.1 ty3-gyp... [more]
TYK29789.13.6e-6281.10ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa][more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Melon (Payzawat) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR46148:SF11CCHC-TYPE INTEGRASEcoord: 26..177
NoneNo IPR availablePANTHERPTHR46148FAMILY NOT NAMEDcoord: 26..177

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Pay0014315.1Pay0014315.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0015074 DNA integration
biological_process GO:0090305 nucleic acid phosphodiester bond hydrolysis
biological_process GO:0006508 proteolysis
biological_process GO:0006278 RNA-dependent DNA biosynthetic process
molecular_function GO:0004190 aspartic-type endopeptidase activity
molecular_function GO:0004519 endonuclease activity
molecular_function GO:0003676 nucleic acid binding
molecular_function GO:0003964 RNA-directed DNA polymerase activity
molecular_function GO:0008270 zinc ion binding