Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: CDSexonpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCAGGTGTTGTAGATCTCTTATATGTTGAGATGAGGTTGGGTGAGCAAATAATGTTAGGCCCTAAGTTAGGTCATATCACAATTGCAGCCATACAAAAGATTAGAGCTCGTATGTTGACAGCGCAGAGCAAACAGAAGAGTTATGCTGATGAACGACGTAAGGATCTAAAGTTTGTTGTGGGAGACATGGTTTTTCTAAAGGTAACACCTATGAAGGGTGTTTTGAGGTTCGAGAAGAAGGGGAAGTTAAGTCCATGTTTTGTAGAGTCATTTAAGATACTTGAGCGAATTGGCTCTGTAGCATGTCGTTTGGCGTTGCCTCCATCGTTTTCTACAGTTTATGATGTGTTCCACGTCTCTATGCTGAGGAAGTATGTGGCAAATCTGACACATGTAGTTGACTTTGAACCATTGCAGATTAATGAGAACATGAGTTTTGAGGAGCAACCCGTTGAGATTTTGGCAAGAGAGGTCAAGATGCTTCGCAATAGAAGAATTGTGCTGGTCAAAGTTCTTTGTCGAAACCACGAGTTGAAGAGGCTACATGGGTGA
mRNA sequence
ATGGCAGGTGTTGTAGATCTCTTATATGTTGAGATGAGGTTGGGTGAGCAAATAATGTTAGGCCCTAAGTTAGGTCATATCACAATTGCAGCCATACAAAAGATTAGAGCTCGTATGTTGACAGCGCAGAGCAAACAGAAGAGTTATGCTGATGAACGACGTAAGGATCTAAAGTTTGTTGTGGGAGACATGGTTTTTCTAAAGGTAACACCTATGAAGGGTGTTTTGAGGTTCGAGAAGAAGGGGAAGTTAAGTCCATGTTTTGTAGAGTCATTTAAGATACTTGAGCGAATTGGCTCTGTAGCATGTCGTTTGGCGTTGCCTCCATCGTTTTCTACAGTTTATGATGTGTTCCACGTCTCTATGCTGAGGAAGTATGTGGCAAATCTGACACATGTAGTTGACTTTGAACCATTGCAGATTAATGAGAACATGAGTTTTGAGGAGCAACCCGTTGAGATTTTGGCAAGAGAGGTCAAGATGCTTCGCAATAGAAGAATTGTGCTGGTCAAAGTTCTTTGTCGAAACCACGAGTTGAAGAGGCTACATGGGTGA
Coding sequence (CDS)
ATGGCAGGTGTTGTAGATCTCTTATATGTTGAGATGAGGTTGGGTGAGCAAATAATGTTAGGCCCTAAGTTAGGTCATATCACAATTGCAGCCATACAAAAGATTAGAGCTCGTATGTTGACAGCGCAGAGCAAACAGAAGAGTTATGCTGATGAACGACGTAAGGATCTAAAGTTTGTTGTGGGAGACATGGTTTTTCTAAAGGTAACACCTATGAAGGGTGTTTTGAGGTTCGAGAAGAAGGGGAAGTTAAGTCCATGTTTTGTAGAGTCATTTAAGATACTTGAGCGAATTGGCTCTGTAGCATGTCGTTTGGCGTTGCCTCCATCGTTTTCTACAGTTTATGATGTGTTCCACGTCTCTATGCTGAGGAAGTATGTGGCAAATCTGACACATGTAGTTGACTTTGAACCATTGCAGATTAATGAGAACATGAGTTTTGAGGAGCAACCCGTTGAGATTTTGGCAAGAGAGGTCAAGATGCTTCGCAATAGAAGAATTGTGCTGGTCAAAGTTCTTTGTCGAAACCACGAGTTGAAGAGGCTACATGGGTGA
Protein sequence
MAGVVDLLYVEMRLGEQIMLGPKLGHITIAAIQKIRARMLTAQSKQKSYADERRKDLKFVVGDMVFLKVTPMKGVLRFEKKGKLSPCFVESFKILERIGSVACRLALPPSFSTVYDVFHVSMLRKYVANLTHVVDFEPLQINENMSFEEQPVEILAREVKMLRNRRIVLVKVLCRNHELKRLHG
Homology
BLAST of Pay0014315 vs. ExPASy TrEMBL
Match:
A0A1S3BPB9 (uncharacterized protein LOC103492060 OS=Cucumis melo OX=3656 GN=LOC103492060 PE=4 SV=1)
HSP 1 Score: 356.3 bits (913), Expect = 7.7e-95
Identity = 184/184 (100.00%), Postives = 184/184 (100.00%), Query Frame = 0
Query: 1 MAGVVDLLYVEMRLGEQIMLGPKLGHITIAAIQKIRARMLTAQSKQKSYADERRKDLKFV 60
MAGVVDLLYVEMRLGEQIMLGPKLGHITIAAIQKIRARMLTAQSKQKSYADERRKDLKFV
Sbjct: 1 MAGVVDLLYVEMRLGEQIMLGPKLGHITIAAIQKIRARMLTAQSKQKSYADERRKDLKFV 60
Query: 61 VGDMVFLKVTPMKGVLRFEKKGKLSPCFVESFKILERIGSVACRLALPPSFSTVYDVFHV 120
VGDMVFLKVTPMKGVLRFEKKGKLSPCFVESFKILERIGSVACRLALPPSFSTVYDVFHV
Sbjct: 61 VGDMVFLKVTPMKGVLRFEKKGKLSPCFVESFKILERIGSVACRLALPPSFSTVYDVFHV 120
Query: 121 SMLRKYVANLTHVVDFEPLQINENMSFEEQPVEILAREVKMLRNRRIVLVKVLCRNHELK 180
SMLRKYVANLTHVVDFEPLQINENMSFEEQPVEILAREVKMLRNRRIVLVKVLCRNHELK
Sbjct: 121 SMLRKYVANLTHVVDFEPLQINENMSFEEQPVEILAREVKMLRNRRIVLVKVLCRNHELK 180
Query: 181 RLHG 185
RLHG
Sbjct: 181 RLHG 184
BLAST of Pay0014315 vs. ExPASy TrEMBL
Match:
A0A5A7TF93 (Pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold2228G00140 PE=4 SV=1)
HSP 1 Score: 350.9 bits (899), Expect = 3.2e-93
Identity = 182/183 (99.45%), Postives = 182/183 (99.45%), Query Frame = 0
Query: 2 AGVVDLLYVEMRLGEQIMLGPKLGHITIAAIQKIRARMLTAQSKQKSYADERRKDLKFVV 61
A VVDLLYVEMRLGEQIMLGPKLGHITIAAIQKIRARMLTAQSKQKSYADERRKDLKFVV
Sbjct: 65 ACVVDLLYVEMRLGEQIMLGPKLGHITIAAIQKIRARMLTAQSKQKSYADERRKDLKFVV 124
Query: 62 GDMVFLKVTPMKGVLRFEKKGKLSPCFVESFKILERIGSVACRLALPPSFSTVYDVFHVS 121
GDMVFLKVTPMKGVLRFEKKGKLSPCFVESFKILERIGSVACRLALPPSFSTVYDVFHVS
Sbjct: 125 GDMVFLKVTPMKGVLRFEKKGKLSPCFVESFKILERIGSVACRLALPPSFSTVYDVFHVS 184
Query: 122 MLRKYVANLTHVVDFEPLQINENMSFEEQPVEILAREVKMLRNRRIVLVKVLCRNHELKR 181
MLRKYVANLTHVVDFEPLQINENMSFEEQPVEILAREVKMLRNRRIVLVKVLCRNHELKR
Sbjct: 185 MLRKYVANLTHVVDFEPLQINENMSFEEQPVEILAREVKMLRNRRIVLVKVLCRNHELKR 244
Query: 182 LHG 185
LHG
Sbjct: 245 LHG 247
BLAST of Pay0014315 vs. ExPASy TrEMBL
Match:
A0A5D3CC37 (Pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1933G00250 PE=4 SV=1)
HSP 1 Score: 260.4 bits (664), Expect = 5.7e-66
Identity = 145/183 (79.23%), Postives = 146/183 (79.78%), Query Frame = 0
Query: 2 AGVVDLLYVEMRLGEQIMLGPKLGHITIAAIQKIRARMLTAQSKQKSYADERRKDLKFVV 61
A VVDLLYVEMRLGEQIMLGPKLGHITIAAIQKIRARMLTAQSKQKSYADER
Sbjct: 79 ACVVDLLYVEMRLGEQIMLGPKLGHITIAAIQKIRARMLTAQSKQKSYADER-------- 138
Query: 62 GDMVFLKVTPMKGVLRFEKKGKLSPCFVESFKILERIGSVACRLALPPSFSTVYDVFHVS 121
+SFKILERIGSVACRLALPPSFSTVYDVFHVS
Sbjct: 139 ----------------------------QSFKILERIGSVACRLALPPSFSTVYDVFHVS 198
Query: 122 MLRKYVANLTHVVDFEPLQINENMSFEEQPVEILAREVKMLRNRRIVLVKVLCRNHELKR 181
MLRKYVANLTHVVDFEPLQINENMSFEEQPVEILAREVKMLRNRRIVLVKVLCRNHELKR
Sbjct: 199 MLRKYVANLTHVVDFEPLQINENMSFEEQPVEILAREVKMLRNRRIVLVKVLCRNHELKR 225
Query: 182 LHG 185
LHG
Sbjct: 259 LHG 225
BLAST of Pay0014315 vs. ExPASy TrEMBL
Match:
A0A5A7TV58 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1810G00130 PE=4 SV=1)
HSP 1 Score: 254.2 bits (648), Expect = 4.1e-64
Identity = 135/167 (80.84%), Postives = 149/167 (89.22%), Query Frame = 0
Query: 14 LGEQIMLGPKLGHITIAAIQKIRARMLTAQSKQKSYADERRKDLKFVVGDMVFLKVTPMK 73
+GEQ MLGP+L T AAIQKIRARM T QSKQKSYADERRKDL+F VGDMVFLKV PMK
Sbjct: 852 VGEQRMLGPELVQTTNAAIQKIRARMFTTQSKQKSYADERRKDLEFEVGDMVFLKVAPMK 911
Query: 74 GVLRFEKKGKLSPCFVESFKILERIGSVACRLALPPSFSTVYDVFHVSMLRKYVANLTHV 133
GVLRF+KKGKLSP FV F+ILERIGSVA LALPPSFS V+DVFHVSMLR+YVA+LTHV
Sbjct: 912 GVLRFQKKGKLSPQFVGPFEILERIGSVAYCLALPPSFSAVHDVFHVSMLRRYVADLTHV 971
Query: 134 VDFEPLQINENMSFEEQPVEILAREVKMLRNRRIVLVKVLCRNHELK 181
VDF+PLQINENMS++EQPVEILAREVKMLRNR I LVKVL RNH+++
Sbjct: 972 VDFKPLQINENMSYKEQPVEILAREVKMLRNRGISLVKVLWRNHKVE 1018
BLAST of Pay0014315 vs. ExPASy TrEMBL
Match:
A0A5D3E202 (Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold208G00040 PE=4 SV=1)
HSP 1 Score: 248.8 bits (634), Expect = 1.7e-62
Identity = 133/164 (81.10%), Postives = 144/164 (87.80%), Query Frame = 0
Query: 14 LGEQIMLGPKLGHITIAAIQKIRARMLTAQSKQKSYADERRKDLKFVVGDMVFLKVTPMK 73
+GEQ MLGP+L T AIQKIRARMLTAQS+QKSYADERRKDL+F VGDMVFLKV PMK
Sbjct: 588 VGEQRMLGPELVQTTNVAIQKIRARMLTAQSRQKSYADERRKDLEFDVGDMVFLKVAPMK 647
Query: 74 GVLRFEKKGKLSPCFVESFKILERIGSVACRLALPPSFSTVYDVFHVSMLRKYVANLTHV 133
G LRFEKKGKLSP FV F+ILERIG VA RLALPPSFS V+DVFHVSMLR+YVA+ THV
Sbjct: 648 GFLRFEKKGKLSPRFVGPFEILERIGPVAYRLALPPSFSAVHDVFHVSMLRRYVADPTHV 707
Query: 134 VDFEPLQINENMSFEEQPVEILAREVKMLRNRRIVLVKVLCRNH 178
V FEPLQINE++S+EEQPVEILAREVKMLRNR I LVKVL RNH
Sbjct: 708 VAFEPLQINEDLSYEEQPVEILAREVKMLRNRHISLVKVLWRNH 751
BLAST of Pay0014315 vs. NCBI nr
Match:
XP_008450467.1 (PREDICTED: uncharacterized protein LOC103492060 [Cucumis melo])
HSP 1 Score: 356.3 bits (913), Expect = 1.6e-94
Identity = 184/184 (100.00%), Postives = 184/184 (100.00%), Query Frame = 0
Query: 1 MAGVVDLLYVEMRLGEQIMLGPKLGHITIAAIQKIRARMLTAQSKQKSYADERRKDLKFV 60
MAGVVDLLYVEMRLGEQIMLGPKLGHITIAAIQKIRARMLTAQSKQKSYADERRKDLKFV
Sbjct: 1 MAGVVDLLYVEMRLGEQIMLGPKLGHITIAAIQKIRARMLTAQSKQKSYADERRKDLKFV 60
Query: 61 VGDMVFLKVTPMKGVLRFEKKGKLSPCFVESFKILERIGSVACRLALPPSFSTVYDVFHV 120
VGDMVFLKVTPMKGVLRFEKKGKLSPCFVESFKILERIGSVACRLALPPSFSTVYDVFHV
Sbjct: 61 VGDMVFLKVTPMKGVLRFEKKGKLSPCFVESFKILERIGSVACRLALPPSFSTVYDVFHV 120
Query: 121 SMLRKYVANLTHVVDFEPLQINENMSFEEQPVEILAREVKMLRNRRIVLVKVLCRNHELK 180
SMLRKYVANLTHVVDFEPLQINENMSFEEQPVEILAREVKMLRNRRIVLVKVLCRNHELK
Sbjct: 121 SMLRKYVANLTHVVDFEPLQINENMSFEEQPVEILAREVKMLRNRRIVLVKVLCRNHELK 180
Query: 181 RLHG 185
RLHG
Sbjct: 181 RLHG 184
BLAST of Pay0014315 vs. NCBI nr
Match:
KAA0040217.1 (pol protein [Cucumis melo var. makuwa])
HSP 1 Score: 350.9 bits (899), Expect = 6.7e-93
Identity = 182/183 (99.45%), Postives = 182/183 (99.45%), Query Frame = 0
Query: 2 AGVVDLLYVEMRLGEQIMLGPKLGHITIAAIQKIRARMLTAQSKQKSYADERRKDLKFVV 61
A VVDLLYVEMRLGEQIMLGPKLGHITIAAIQKIRARMLTAQSKQKSYADERRKDLKFVV
Sbjct: 65 ACVVDLLYVEMRLGEQIMLGPKLGHITIAAIQKIRARMLTAQSKQKSYADERRKDLKFVV 124
Query: 62 GDMVFLKVTPMKGVLRFEKKGKLSPCFVESFKILERIGSVACRLALPPSFSTVYDVFHVS 121
GDMVFLKVTPMKGVLRFEKKGKLSPCFVESFKILERIGSVACRLALPPSFSTVYDVFHVS
Sbjct: 125 GDMVFLKVTPMKGVLRFEKKGKLSPCFVESFKILERIGSVACRLALPPSFSTVYDVFHVS 184
Query: 122 MLRKYVANLTHVVDFEPLQINENMSFEEQPVEILAREVKMLRNRRIVLVKVLCRNHELKR 181
MLRKYVANLTHVVDFEPLQINENMSFEEQPVEILAREVKMLRNRRIVLVKVLCRNHELKR
Sbjct: 185 MLRKYVANLTHVVDFEPLQINENMSFEEQPVEILAREVKMLRNRRIVLVKVLCRNHELKR 244
Query: 182 LHG 185
LHG
Sbjct: 245 LHG 247
BLAST of Pay0014315 vs. NCBI nr
Match:
TYK07879.1 (pol protein [Cucumis melo var. makuwa])
HSP 1 Score: 260.4 bits (664), Expect = 1.2e-65
Identity = 145/183 (79.23%), Postives = 146/183 (79.78%), Query Frame = 0
Query: 2 AGVVDLLYVEMRLGEQIMLGPKLGHITIAAIQKIRARMLTAQSKQKSYADERRKDLKFVV 61
A VVDLLYVEMRLGEQIMLGPKLGHITIAAIQKIRARMLTAQSKQKSYADER
Sbjct: 79 ACVVDLLYVEMRLGEQIMLGPKLGHITIAAIQKIRARMLTAQSKQKSYADER-------- 138
Query: 62 GDMVFLKVTPMKGVLRFEKKGKLSPCFVESFKILERIGSVACRLALPPSFSTVYDVFHVS 121
+SFKILERIGSVACRLALPPSFSTVYDVFHVS
Sbjct: 139 ----------------------------QSFKILERIGSVACRLALPPSFSTVYDVFHVS 198
Query: 122 MLRKYVANLTHVVDFEPLQINENMSFEEQPVEILAREVKMLRNRRIVLVKVLCRNHELKR 181
MLRKYVANLTHVVDFEPLQINENMSFEEQPVEILAREVKMLRNRRIVLVKVLCRNHELKR
Sbjct: 199 MLRKYVANLTHVVDFEPLQINENMSFEEQPVEILAREVKMLRNRRIVLVKVLCRNHELKR 225
Query: 182 LHG 185
LHG
Sbjct: 259 LHG 225
BLAST of Pay0014315 vs. NCBI nr
Match:
KAA0045265.1 (ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa] >TYK28691.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa])
HSP 1 Score: 254.2 bits (648), Expect = 8.5e-64
Identity = 135/167 (80.84%), Postives = 149/167 (89.22%), Query Frame = 0
Query: 14 LGEQIMLGPKLGHITIAAIQKIRARMLTAQSKQKSYADERRKDLKFVVGDMVFLKVTPMK 73
+GEQ MLGP+L T AAIQKIRARM T QSKQKSYADERRKDL+F VGDMVFLKV PMK
Sbjct: 852 VGEQRMLGPELVQTTNAAIQKIRARMFTTQSKQKSYADERRKDLEFEVGDMVFLKVAPMK 911
Query: 74 GVLRFEKKGKLSPCFVESFKILERIGSVACRLALPPSFSTVYDVFHVSMLRKYVANLTHV 133
GVLRF+KKGKLSP FV F+ILERIGSVA LALPPSFS V+DVFHVSMLR+YVA+LTHV
Sbjct: 912 GVLRFQKKGKLSPQFVGPFEILERIGSVAYCLALPPSFSAVHDVFHVSMLRRYVADLTHV 971
Query: 134 VDFEPLQINENMSFEEQPVEILAREVKMLRNRRIVLVKVLCRNHELK 181
VDF+PLQINENMS++EQPVEILAREVKMLRNR I LVKVL RNH+++
Sbjct: 972 VDFKPLQINENMSYKEQPVEILAREVKMLRNRGISLVKVLWRNHKVE 1018
BLAST of Pay0014315 vs. NCBI nr
Match:
TYK29789.1 (ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa])
HSP 1 Score: 248.8 bits (634), Expect = 3.6e-62
Identity = 133/164 (81.10%), Postives = 144/164 (87.80%), Query Frame = 0
Query: 14 LGEQIMLGPKLGHITIAAIQKIRARMLTAQSKQKSYADERRKDLKFVVGDMVFLKVTPMK 73
+GEQ MLGP+L T AIQKIRARMLTAQS+QKSYADERRKDL+F VGDMVFLKV PMK
Sbjct: 588 VGEQRMLGPELVQTTNVAIQKIRARMLTAQSRQKSYADERRKDLEFDVGDMVFLKVAPMK 647
Query: 74 GVLRFEKKGKLSPCFVESFKILERIGSVACRLALPPSFSTVYDVFHVSMLRKYVANLTHV 133
G LRFEKKGKLSP FV F+ILERIG VA RLALPPSFS V+DVFHVSMLR+YVA+ THV
Sbjct: 648 GFLRFEKKGKLSPRFVGPFEILERIGPVAYRLALPPSFSAVHDVFHVSMLRRYVADPTHV 707
Query: 134 VDFEPLQINENMSFEEQPVEILAREVKMLRNRRIVLVKVLCRNH 178
V FEPLQINE++S+EEQPVEILAREVKMLRNR I LVKVL RNH
Sbjct: 708 VAFEPLQINEDLSYEEQPVEILAREVKMLRNRHISLVKVLWRNH 751
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
Match Name | E-value | Identity | Description | |
A0A1S3BPB9 | 7.7e-95 | 100.00 | uncharacterized protein LOC103492060 OS=Cucumis melo OX=3656 GN=LOC103492060 PE=... | [more] |
A0A5A7TF93 | 3.2e-93 | 99.45 | Pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold2228G00140 P... | [more] |
A0A5D3CC37 | 5.7e-66 | 79.23 | Pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1933G00250 P... | [more] |
A0A5A7TV58 | 4.1e-64 | 80.84 | Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold18... | [more] |
A0A5D3E202 | 1.7e-62 | 81.10 | Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E567... | [more] |
Match Name | E-value | Identity | Description | |
XP_008450467.1 | 1.6e-94 | 100.00 | PREDICTED: uncharacterized protein LOC103492060 [Cucumis melo] | [more] |
KAA0040217.1 | 6.7e-93 | 99.45 | pol protein [Cucumis melo var. makuwa] | [more] |
TYK07879.1 | 1.2e-65 | 79.23 | pol protein [Cucumis melo var. makuwa] | [more] |
KAA0045265.1 | 8.5e-64 | 80.84 | ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa] >TYK28691.1 ty3-gyp... | [more] |
TYK29789.1 | 3.6e-62 | 81.10 | ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa] | [more] |
Match Name | E-value | Identity | Description | |