Pay0014245 (gene) Melon (Payzawat) v1

Overview


Name	Pay0014245
Type	gene
Organism	Cucumis melo L. var. inodorus cv. Payzawat (Melon (Payzawat) v1)
Description	ribosome biogenesis protein BRX1 homolog
Location	chr10: 16239001 .. 16241065 (+)
RNA-Seq Expression	Pay0014245
Synteny	Pay0014245

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexonpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGAAGTGGTCGCTTGATGAAAGCGAAAAGGGTGAATAAAAATGAAAACGCTTTGTTCTGTACGACCGCCGACCGTTAACCTATTGAAGTTATCCTTGTTCTTTATAGAAAATCTTAGAAGATGGATGTTTCAACATTTACCATTCATTTTTCTTTGCAGGTGGTCCTAAACAAAAAGAAAGAATTTTAATAGCAAAGGGTTGTTCTTTTTCTAAGAATAGGTGCAATGAGGTATGTTAGGTTATGTTTCGTTTCACTTGAATTCGTAATATGCTTTTCTACACTCTCATGAGTCATTCATCTAAGGAAAAGTGTTATATCCTTTCCAATACACCCATAGTTATTATTTATACACTTGCGTGGGTTGACAAAGCATCTTCAAAATTATTGAGGATAGGCCATGATTATAGTTCAAGGAATTGGATCTTTCAACTTCAACATCCTGGTTATTAAGGCAATAACTTTGGTAGTATATGAATCCAAAACCTTTTTTATGTATTGAATATCAGGAAAGGTTTACAGCATCGTAGTTAAACAATATTATGATGTAATTGTTTCTTTTTCTAGAATAAGTGTTGAATGTTCTATCAAGTTTAGTTCAATTGGAATGTAAATAAGAGCAAGATTTTCTTCATTGCTGGGTAATGTTATGATGGAAAATATTATGATAGAATGGTTGCAATGGCTATTTTACTCTTTCCAGAGAACATGGTAGCATGGGCTTTTTCTTACCAAGTTGATTCAATTCTCATTTTGGTAGCTCCTCTCTTCTTCGATCTTGATCTCTATGATCACTTACTTGCATGCTTTAGATTTAATTGGCATTTTGCATAAGAAAGCTAAAAGACTCTATGTTTGTTCCTATCTCAATCTACTTGGGATGATGAACTTTTTTTTTTATCTTGATTGCATTTTTGTTCTTTTAGTTCAATGATTTTGGTACTGATGGAGGACCGGCAGCCAAGTATCTTAATCCAAGTTTTCTTACTTCTCCATTTTTTTTTGCTTTCAGTGCAATAGAAGAATTGAAGCTTATAGGGAACTATCTTAAAGGTTCCCGTCCAATTTTGACATTTTCATCGAATTTTGATAAAGATGTCCTCTGGAAACTTCTGAAGGAAATGATTATTCAGGTACCAATGGCAAAGTTATAGAATTTAATGCGTATGCAAACATTTTCTACTTGCTACAAAATTTAATGCTAATTGTGGATAGCATCCAAAAGTACAACCTCCCCTTGACACCTAAATAATGCACTGGATGTTGTCTTTCTTCTAAATGTTTGCTCGCCGCTCTTTTCCATGAAGTGGCAAATGAATGCAGAAAAATATTCTACTTTGTGTTTGGCGAAGACATTGAAAAGAGTTTTAGGAGTATTGTGGTATTAATGGCAACTATTTATTATGATATTGGAAGTATATTAGTCATTAGTTTTTAGGGGGATTGTCAATGAATGGTTACACTTTAGAGAAAGACTAAGATAAGAGCTTGGATAGGTACAAGTAAAGAAACAGTCCTCCTAACTTCAGATTTAATGACCAAGATTTCACTTAGAGAAAAAATAAAAAATTGGCCCTTAGGTGGCAGTGAGCTTCAGCTTTTAACTCCGTGAATGTTGAAGTGTTGCACATTTTTTAATTGACAGATTGGTAGATTAATGAGTTTTCTAAAAAGATATTTATTCCATAAACTATGTTTCTGATTGCAGTATTCTTAGTTGGCTTGAATCTTACTTGTCAGGATTTTATATATGCTCCTGTGTCTGTGTTATAAAACTAACATTCTAAATGTTTCTATAGAAATTCACATCTTCTCCTAATCACAGTATGAAGGTTAGTACAACGTTTACATTTTCAATGTGCAACCCTTTCATAGTTTTGTTTTATATGTGTAAGTGTTGAGATGATCTGACTAAAAAGTTTTAAAGATGAATTGTTGTTCTTTTTTACTAAAACTTGCGAAATTCTATTGTAGGTTGTTGCTTCAAGAATTATTTGGTGAAACGTACTACGAGGCTTCGTGAAGTATTTAACACCCGTAAAGAAGTAATTATTGAGTGTTAG

mRNA sequence

ATGAGAAGTGGTCGCTTGATGAAAGCGAAAAGGGTGAATAAAAATGAAAACGCTTTGTTCTGTGGTCCTAAACAAAAAGAAAGAATTTTAATAGCAAAGGGTTGTTCTTTTTCTAAGAATAGGTGCAATGAGTTCAATGATTTTGGTACTGATGGAGGACCGGCAGCCAATGCAATAGAAGAATTGAAGCTTATAGGGAACTATCTTAAAGGTTCCCGTCCAATTTTGACATTTTCATCGAATTTTGATAAAGATGTCCTCTGGAAACTTCTGAAGGAAATGATTATTCAGAAATTCACATCTTCTCCTAATCACAGTATGAAGGTTAGTACAACGTTTACATTTTCAATGTGCAACCCTTTCATAGTTTTGTTTTATATGTGTTGTTGCTTCAAGAATTATTTGGTGAAACGTACTACGAGGCTTCGTGAAGTATTTAACACCCGTAAAGAAGTAATTATTGAGTGTTAG

Coding sequence (CDS)

ATGAGAAGTGGTCGCTTGATGAAAGCGAAAAGGGTGAATAAAAATGAAAACGCTTTGTTCTGTGGTCCTAAACAAAAAGAAAGAATTTTAATAGCAAAGGGTTGTTCTTTTTCTAAGAATAGGTGCAATGAGTTCAATGATTTTGGTACTGATGGAGGACCGGCAGCCAATGCAATAGAAGAATTGAAGCTTATAGGGAACTATCTTAAAGGTTCCCGTCCAATTTTGACATTTTCATCGAATTTTGATAAAGATGTCCTCTGGAAACTTCTGAAGGAAATGATTATTCAGAAATTCACATCTTCTCCTAATCACAGTATGAAGGTTAGTACAACGTTTACATTTTCAATGTGCAACCCTTTCATAGTTTTGTTTTATATGTGTTGTTGCTTCAAGAATTATTTGGTGAAACGTACTACGAGGCTTCGTGAAGTATTTAACACCCGTAAAGAAGTAATTATTGAGTGTTAG

Protein sequence

MRSGRLMKAKRVNKNENALFCGPKQKERILIAKGCSFSKNRCNEFNDFGTDGGPAANAIEELKLIGNYLKGSRPILTFSSNFDKDVLWKLLKEMIIQKFTSSPNHSMKVSTTFTFSMCNPFIVLFYMCCCFKNYLVKRTTRLREVFNTRKEVIIEC

Homology

[Close]

BLAST of Pay0014245 vs. ExPASy Swiss-Prot
Match: Q9C928 (Ribosome biogenesis protein BRX1 homolog 2 OS=Arabidopsis thaliana OX=3702 GN=BRIX1-2 PE=2 SV=1)

HSP 1 Score: 73.2 bits (178), Expect = 3.0e-12
Identity = 41/85 (48.24%), Postives = 51/85 (60.00%), Query Frame = 0


Query: 55  AANAIEELKLIGNYLKGSRPILTFSSNFDKDVLWKLLKEMIIQKFTSSPNHSMKV---ST 114
           A +A+EE+KL GN+LKGSRP+LTFSSNFDKD  WKLLKEM+ Q F     H         
Sbjct: 143 AVHAMEEMKLTGNHLKGSRPLLTFSSNFDKDAHWKLLKEMLTQVFGIPKEHRKSKPYHDH 202

Query: 115 TFTFSMCNPFIVLFYMCCCFKNYLV 137
            F FS+ +  I        F+NY +
Sbjct: 203 VFVFSIVDEHI-------WFRNYQI 220

[Close]

BLAST of Pay0014245 vs. ExPASy Swiss-Prot
Match: Q9LE16 (Ribosome biogenesis protein BRX1 homolog 1 OS=Arabidopsis thaliana OX=3702 GN=BRIX1-1 PE=2 SV=1)

HSP 1 Score: 68.6 bits (166), Expect = 7.4e-11
Identity = 42/95 (44.21%), Postives = 52/95 (54.74%), Query Frame = 0


Query: 52  GGP-------AANAIEELKLIGNYLKGSRPILTFSSNFDKDVLWKLLKEMIIQKFTSSPN 111
           GGP       A + +EELKL GN+LKGSRP+LTFSSNF+ D  WKLLKEM+ Q F     
Sbjct: 129 GGPSVKFLVNAVHTMEELKLTGNHLKGSRPLLTFSSNFENDAHWKLLKEMLTQIFGIPEG 188

Query: 112 HSMKV---STTFTFSMCNPFIVLFYMCCCFKNYLV 137
           H          F FS+ +  I        F+NY +
Sbjct: 189 HRKSKPYHDHVFVFSIVDDHI-------WFRNYQI 216

[Close]

BLAST of Pay0014245 vs. ExPASy Swiss-Prot
Match: Q9VZE6 (Ribosome biogenesis protein BRX1 homolog OS=Drosophila melanogaster OX=7227 GN=CG11583 PE=2 SV=2)

HSP 1 Score: 54.3 bits (129), Expect = 1.4e-06
Identity = 36/81 (44.44%), Postives = 46/81 (56.79%), Query Frame = 0


Query: 46  NDFGTDGGPAANAIE------ELKLIGNYLKGSRPILTFSSNFDKDVLWKLLKEMIIQKF 105
           N  G+ G  A   IE      ELK+ GN L+GSRP+L+F S FD+    KLLKE+ +Q +
Sbjct: 122 NTSGSTGPSAKFLIENIHTMAELKMTGNCLRGSRPLLSFDSKFDELPHLKLLKELFVQTY 181

Query: 106 TSSPNHSMK----VSTTFTFS 117
            S PNH  K    V   FTF+
Sbjct: 182 -SVPNHHPKSQPFVDHVFTFT 201

[Close]

BLAST of Pay0014245 vs. ExPASy Swiss-Prot
Match: Q8UVY2 (Ribosome biogenesis protein BRX1 homolog OS=Xenopus laevis OX=8355 GN=brix1 PE=2 SV=1)

HSP 1 Score: 51.2 bits (121), Expect = 1.2e-05
Identity = 32/83 (38.55%), Postives = 46/83 (55.42%), Query Frame = 0


Query: 57  NAIEELKLIGNYLKGSRPILTFSSNFDKDVLWKLLKEMIIQKFTSSPNHSMK---VSTTF 116
           + + ELK+ GN LKGSRPIL+F   FD++  + LLKE++ Q F +   H      V   F
Sbjct: 140 HTLAELKMSGNCLKGSRPILSFDPAFDREPQYALLKELLTQIFGTPRYHPRSQPFVDHIF 199

Query: 117 TFSMCNPFIVLFYMCCCFKNYLV 137
           TFS+ +  I        F+NY +
Sbjct: 200 TFSIADNRI-------WFRNYQI 215

[Close]

BLAST of Pay0014245 vs. ExPASy Swiss-Prot
Match: Q3SZZ0 (Ribosome biogenesis protein BRX1 homolog OS=Bos taurus OX=9913 GN=BRIX1 PE=2 SV=1)

HSP 1 Score: 50.1 bits (118), Expect = 2.7e-05
Identity = 27/64 (42.19%), Postives = 40/64 (62.50%), Query Frame = 0


Query: 57  NAIEELKLIGNYLKGSRPILTFSSNFDKDVLWKLLKEMIIQKFTSSPNHSMK---VSTTF 116
           + + ELK+ GN LKGSRP+L+F   FD+   + LLKE++IQ F++   H      V   F
Sbjct: 147 HTLAELKMTGNCLKGSRPLLSFDPAFDELPHYALLKELLIQIFSTPRYHPKSQPFVDHVF 206

Query: 117 TFSM 118
           TF++
Sbjct: 207 TFTI 210

[Close]

BLAST of Pay0014245 vs. ExPASy TrEMBL
Match: A0A1S3CC56 (ribosome biogenesis protein BRX1 homolog OS=Cucumis melo OX=3656 GN=LOC103499121 PE=4 SV=1)

HSP 1 Score: 204.5 bits (519), Expect = 3.2e-49
Identity = 99/100 (99.00%), Postives = 100/100 (100.00%), Query Frame = 0


Query: 57  NAIEELKLIGNYLKGSRPILTFSSNFDKDVLWKLLKEMIIQKFTSSPNHSMKVSTTFTFS 116
           +AIEELKLIGNYLKGSRPILTFSSNFDKDVLWKLLKEMIIQKFTSSPNHSMKVSTTFTFS
Sbjct: 2   SAIEELKLIGNYLKGSRPILTFSSNFDKDVLWKLLKEMIIQKFTSSPNHSMKVSTTFTFS 61

Query: 117 MCNPFIVLFYMCCCFKNYLVKRTTRLREVFNTRKEVIIEC 157
           MCNPFIVLFYMCCCFKNYLVKRTTRLREVFNTRKEVIIEC
Sbjct: 62  MCNPFIVLFYMCCCFKNYLVKRTTRLREVFNTRKEVIIEC 101

[Close]

BLAST of Pay0014245 vs. ExPASy TrEMBL
Match: A0A5A7SQ25 (Ribosome biogenesis protein BRX1-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold139G004140 PE=4 SV=1)

HSP 1 Score: 176.0 bits (445), Expect = 1.2e-40
Identity = 89/112 (79.46%), Postives = 94/112 (83.93%), Query Frame = 0


Query: 1   MRSGRLMKAKRVNKNENALFCGPKQKERILIAKGCSFSKNRCNEFNDFGTDGGPAA---- 60
           MRSGRLMKAKRVNKNENALFCGPKQKERI +AKGCSFSKNRCNEFNDFGT+ GP A    
Sbjct: 1   MRSGRLMKAKRVNKNENALFCGPKQKERISMAKGCSFSKNRCNEFNDFGTNRGPTAKYLN 60

Query: 61  -----------NAIEELKLIGNYLKGSRPILTFSSNFDKDVLWKLLKEMIIQ 98
                      +A+EELKLIGNYLKGSRPILTFSSNFDKDVLWKL+KEMIIQ
Sbjct: 61  PSFLTSPFFAFSAMEELKLIGNYLKGSRPILTFSSNFDKDVLWKLMKEMIIQ 112

[Close]

BLAST of Pay0014245 vs. ExPASy TrEMBL
Match: A0A1S4DVW8 (uncharacterized protein LOC103487553 OS=Cucumis melo OX=3656 GN=LOC103487553 PE=4 SV=1)

HSP 1 Score: 102.1 bits (253), Expect = 2.2e-18
Identity = 56/86 (65.12%), Postives = 60/86 (69.77%), Query Frame = 0


Query: 2   RSGRLMKAKRVNKNENALFCGPKQKERILIAKGCSFSKNRCNEFNDFGTDGGPAANAIEE 61
           RSGRLMKAKRVNKNENALFCGPKQKERI +AKGCSFSKNRCNE N            IE 
Sbjct: 45  RSGRLMKAKRVNKNENALFCGPKQKERISMAKGCSFSKNRCNECN----------GRIEA 104

Query: 62  LKLIGNYLKGSRPILTFSSNFDKDVL 88
            + +      +   LTFSSNFDKDVL
Sbjct: 105 YRELSERFPSN---LTFSSNFDKDVL 117

[Close]

BLAST of Pay0014245 vs. ExPASy TrEMBL
Match: A0A1S3C4K0 (ribosome biogenesis protein BRX1 homolog OS=Cucumis melo OX=3656 GN=LOC103496572 PE=4 SV=1)

HSP 1 Score: 83.2 bits (204), Expect = 1.1e-12
Identity = 40/47 (85.11%), Postives = 43/47 (91.49%), Query Frame = 0


Query: 55  AANAIEELKLIGNYLKGSRPILTFSSNFDKDVLWKLLKEMIIQKFTS 102
           A +A+EELKLIGNYLKGSRPILTFSSNFDKDVLWKL+KEMIIQ   S
Sbjct: 28  AMSAMEELKLIGNYLKGSRPILTFSSNFDKDVLWKLMKEMIIQVVAS 74

[Close]

BLAST of Pay0014245 vs. ExPASy TrEMBL
Match: A0A1S3BQS3 (ribosome biogenesis protein BRX1-like OS=Cucumis melo OX=3656 GN=LOC103492188 PE=3 SV=1)

HSP 1 Score: 80.5 bits (197), Expect = 6.9e-12
Identity = 54/113 (47.79%), Postives = 63/113 (55.75%), Query Frame = 0


Query: 6   LMKAKRVNKNENALFCGPKQKERILIAKGCSFSK-NRCNEFNDF-----GTDGGP----- 65
           L   K+ NK E+    G    E + + KGCS S    C +  D          GP     
Sbjct: 80  LPHCKKDNKVESRSSKGATLNELVEL-KGCSSSLFFECRKHKDLYLWMAKCPSGPSVKFL 139

Query: 66  --AANAIEELKLIGNYLKGSRPILTFSSNFDKDVLWKLLKEMIIQKFTSSPNH 106
             A + +EELKL GN+LKGSRPILTFSSNFDKDV WKLLKEMIIQ F +   H
Sbjct: 140 VNAVHTMEELKLTGNHLKGSRPILTFSSNFDKDVHWKLLKEMIIQIFGTPKEH 191

[Close]

BLAST of Pay0014245 vs. NCBI nr
Match: XP_008460241.1 (PREDICTED: ribosome biogenesis protein BRX1 homolog [Cucumis melo] >XP_008460242.1 PREDICTED: ribosome biogenesis protein BRX1 homolog [Cucumis melo])

HSP 1 Score: 204.5 bits (519), Expect = 6.5e-49
Identity = 99/100 (99.00%), Postives = 100/100 (100.00%), Query Frame = 0


Query: 57  NAIEELKLIGNYLKGSRPILTFSSNFDKDVLWKLLKEMIIQKFTSSPNHSMKVSTTFTFS 116
           +AIEELKLIGNYLKGSRPILTFSSNFDKDVLWKLLKEMIIQKFTSSPNHSMKVSTTFTFS
Sbjct: 2   SAIEELKLIGNYLKGSRPILTFSSNFDKDVLWKLLKEMIIQKFTSSPNHSMKVSTTFTFS 61

Query: 117 MCNPFIVLFYMCCCFKNYLVKRTTRLREVFNTRKEVIIEC 157
           MCNPFIVLFYMCCCFKNYLVKRTTRLREVFNTRKEVIIEC
Sbjct: 62  MCNPFIVLFYMCCCFKNYLVKRTTRLREVFNTRKEVIIEC 101

[Close]

BLAST of Pay0014245 vs. NCBI nr
Match: KAA0031641.1 (ribosome biogenesis protein BRX1-like protein [Cucumis melo var. makuwa])

HSP 1 Score: 176.0 bits (445), Expect = 2.5e-40
Identity = 89/112 (79.46%), Postives = 94/112 (83.93%), Query Frame = 0


Query: 1   MRSGRLMKAKRVNKNENALFCGPKQKERILIAKGCSFSKNRCNEFNDFGTDGGPAA---- 60
           MRSGRLMKAKRVNKNENALFCGPKQKERI +AKGCSFSKNRCNEFNDFGT+ GP A    
Sbjct: 1   MRSGRLMKAKRVNKNENALFCGPKQKERISMAKGCSFSKNRCNEFNDFGTNRGPTAKYLN 60

Query: 61  -----------NAIEELKLIGNYLKGSRPILTFSSNFDKDVLWKLLKEMIIQ 98
                      +A+EELKLIGNYLKGSRPILTFSSNFDKDVLWKL+KEMIIQ
Sbjct: 61  PSFLTSPFFAFSAMEELKLIGNYLKGSRPILTFSSNFDKDVLWKLMKEMIIQ 112

[Close]

BLAST of Pay0014245 vs. NCBI nr
Match: XP_016899860.1 (PREDICTED: uncharacterized protein LOC103487553 [Cucumis melo] >XP_016899861.1 PREDICTED: uncharacterized protein LOC103487553 [Cucumis melo])

HSP 1 Score: 102.1 bits (253), Expect = 4.6e-18
Identity = 56/86 (65.12%), Postives = 60/86 (69.77%), Query Frame = 0


Query: 2   RSGRLMKAKRVNKNENALFCGPKQKERILIAKGCSFSKNRCNEFNDFGTDGGPAANAIEE 61
           RSGRLMKAKRVNKNENALFCGPKQKERI +AKGCSFSKNRCNE N            IE 
Sbjct: 45  RSGRLMKAKRVNKNENALFCGPKQKERISMAKGCSFSKNRCNECN----------GRIEA 104

Query: 62  LKLIGNYLKGSRPILTFSSNFDKDVL 88
            + +      +   LTFSSNFDKDVL
Sbjct: 105 YRELSERFPSN---LTFSSNFDKDVL 117

[Close]

BLAST of Pay0014245 vs. NCBI nr
Match: XP_008456708.1 (PREDICTED: ribosome biogenesis protein BRX1 homolog [Cucumis melo])

HSP 1 Score: 83.2 bits (204), Expect = 2.2e-12
Identity = 40/47 (85.11%), Postives = 43/47 (91.49%), Query Frame = 0


Query: 55  AANAIEELKLIGNYLKGSRPILTFSSNFDKDVLWKLLKEMIIQKFTS 102
           A +A+EELKLIGNYLKGSRPILTFSSNFDKDVLWKL+KEMIIQ   S
Sbjct: 28  AMSAMEELKLIGNYLKGSRPILTFSSNFDKDVLWKLMKEMIIQVVAS 74

[Close]

BLAST of Pay0014245 vs. NCBI nr
Match: XP_008450669.1 (PREDICTED: ribosome biogenesis protein BRX1-like [Cucumis melo] >XP_008450670.1 PREDICTED: ribosome biogenesis protein BRX1-like [Cucumis melo] >XP_008450671.1 PREDICTED: ribosome biogenesis protein BRX1-like [Cucumis melo] >TYK10224.1 ribosome biogenesis protein BRX1-like [Cucumis melo var. makuwa])

HSP 1 Score: 80.5 bits (197), Expect = 1.4e-11
Identity = 54/113 (47.79%), Postives = 63/113 (55.75%), Query Frame = 0


Query: 6   LMKAKRVNKNENALFCGPKQKERILIAKGCSFSK-NRCNEFNDF-----GTDGGP----- 65
           L   K+ NK E+    G    E + + KGCS S    C +  D          GP     
Sbjct: 80  LPHCKKDNKVESRSSKGATLNELVEL-KGCSSSLFFECRKHKDLYLWMAKCPSGPSVKFL 139

Query: 66  --AANAIEELKLIGNYLKGSRPILTFSSNFDKDVLWKLLKEMIIQKFTSSPNH 106
             A + +EELKL GN+LKGSRPILTFSSNFDKDV WKLLKEMIIQ F +   H
Sbjct: 140 VNAVHTMEELKLTGNHLKGSRPILTFSSNFDKDVHWKLLKEMIIQIFGTPKEH 191

[Close]

BLAST of Pay0014245 vs. TAIR 10
Match: AT1G52930.1 (Ribosomal RNA processing Brix domain protein )

HSP 1 Score: 73.2 bits (178), Expect = 2.1e-13
Identity = 41/85 (48.24%), Postives = 51/85 (60.00%), Query Frame = 0


Query: 55  AANAIEELKLIGNYLKGSRPILTFSSNFDKDVLWKLLKEMIIQKFTSSPNHSMKV---ST 114
           A +A+EE+KL GN+LKGSRP+LTFSSNFDKD  WKLLKEM+ Q F     H         
Sbjct: 143 AVHAMEEMKLTGNHLKGSRPLLTFSSNFDKDAHWKLLKEMLTQVFGIPKEHRKSKPYHDH 202

Query: 115 TFTFSMCNPFIVLFYMCCCFKNYLV 137
            F FS+ +  I        F+NY +
Sbjct: 203 VFVFSIVDEHI-------WFRNYQI 220

[Close]

BLAST of Pay0014245 vs. TAIR 10
Match: AT3G15460.1 (Ribosomal RNA processing Brix domain protein )

HSP 1 Score: 68.6 bits (166), Expect = 5.2e-12
Identity = 42/95 (44.21%), Postives = 52/95 (54.74%), Query Frame = 0


Query: 52  GGP-------AANAIEELKLIGNYLKGSRPILTFSSNFDKDVLWKLLKEMIIQKFTSSPN 111
           GGP       A + +EELKL GN+LKGSRP+LTFSSNF+ D  WKLLKEM+ Q F     
Sbjct: 129 GGPSVKFLVNAVHTMEELKLTGNHLKGSRPLLTFSSNFENDAHWKLLKEMLTQIFGIPEG 188

Query: 112 HSMKV---STTFTFSMCNPFIVLFYMCCCFKNYLV 137
           H          F FS+ +  I        F+NY +
Sbjct: 189 HRKSKPYHDHVFVFSIVDDHI-------WFRNYQI 216

The following BLAST results are available for this feature:

BLAST of Pay0014245 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9C928	3.0e-12	48.24	Ribosome biogenesis protein BRX1 homolog 2 OS=Arabidopsis thaliana OX=3702 GN=BR...	[more]
Q9LE16	7.4e-11	44.21	Ribosome biogenesis protein BRX1 homolog 1 OS=Arabidopsis thaliana OX=3702 GN=BR...	[more]
Q9VZE6	1.4e-06	44.44	Ribosome biogenesis protein BRX1 homolog OS=Drosophila melanogaster OX=7227 GN=C...	[more]
Q8UVY2	1.2e-05	38.55	Ribosome biogenesis protein BRX1 homolog OS=Xenopus laevis OX=8355 GN=brix1 PE=2...	[more]
Q3SZZ0	2.7e-05	42.19	Ribosome biogenesis protein BRX1 homolog OS=Bos taurus OX=9913 GN=BRIX1 PE=2 SV=...	[more]

BLAST of Pay0014245 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S3CC56	3.2e-49	99.00	ribosome biogenesis protein BRX1 homolog OS=Cucumis melo OX=3656 GN=LOC103499121...	[more]
A0A5A7SQ25	1.2e-40	79.46	Ribosome biogenesis protein BRX1-like protein OS=Cucumis melo var. makuwa OX=119...	[more]
A0A1S4DVW8	2.2e-18	65.12	uncharacterized protein LOC103487553 OS=Cucumis melo OX=3656 GN=LOC103487553 PE=...	[more]
A0A1S3C4K0	1.1e-12	85.11	ribosome biogenesis protein BRX1 homolog OS=Cucumis melo OX=3656 GN=LOC103496572...	[more]
A0A1S3BQS3	6.9e-12	47.79	ribosome biogenesis protein BRX1-like OS=Cucumis melo OX=3656 GN=LOC103492188 PE...	[more]

BLAST of Pay0014245 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008460241.1	6.5e-49	99.00	PREDICTED: ribosome biogenesis protein BRX1 homolog [Cucumis melo] >XP_008460242...	[more]
KAA0031641.1	2.5e-40	79.46	ribosome biogenesis protein BRX1-like protein [Cucumis melo var. makuwa]	[more]
XP_016899860.1	4.6e-18	65.12	PREDICTED: uncharacterized protein LOC103487553 [Cucumis melo] >XP_016899861.1 P...	[more]
XP_008456708.1	2.2e-12	85.11	PREDICTED: ribosome biogenesis protein BRX1 homolog [Cucumis melo]	[more]
XP_008450669.1	1.4e-11	47.79	PREDICTED: ribosome biogenesis protein BRX1-like [Cucumis melo] >XP_008450670.1 ...	[more]

BLAST of Pay0014245 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G52930.1	2.1e-13	48.24	Ribosomal RNA processing Brix domain protein	[more]
AT3G15460.1	5.2e-12	44.21	Ribosomal RNA processing Brix domain protein	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (Payzawat) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR13634:SF3	RIBOSOME BIOGENESIS PROTEIN BRX1 HOMOLOG 2	coord: 55..122
IPR026532	Ribosome biogenesis protein BRX1	PANTHER	PTHR13634	RIBOSOME BIOGENESIS PROTEIN BRIX	coord: 55..122

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Pay0014245.1	Pay0014245.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006364	rRNA processing
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0019843	rRNA binding