Pay0014117 (gene) Melon (Payzawat) v1

Overview
NamePay0014117
Typegene
OrganismCucumis melo L. var. inodorus cv. Payzawat (Melon (Payzawat) v1)
DescriptionRetrotransposon protein
Locationchr05: 20997392 .. 20997864 (+)
RNA-Seq ExpressionPay0014117
SyntenyPay0014117
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGATGGCGGAGAAACTACCTGGATGTCAGATCCACGCAACGACTGTAATTGACAGTAGAATAAAGACACTGAAGCAGACATTCCAGGCCATCGCCGAAATGCAGGGTTCAGCGTGTAATGACTTTGGGTGGAACGATAAAGAGAAATGTATCATTGCGGAGAAAGGATTATTTGATAATTGGGTTAGGGTAAGGAAAATAATATAAACATCACACAACATTTGCAATGTACATTTACTTAACAATTTTTCTCTCAGTACACATAAGTGATCTTTTTTTCCCCGCAGTCGTATCCTGCAGCAAAGGAACTCCTGAACAAACTGTTTTCGTATTACGACGAACTTACATATGTGTTCAGTCGCGATAAGGCAACGGGTCGGTTCGCTGAGACATTTGCCGACGTGGGTCTAACGAGCTTAACGGGTATGACGGATTTGATATGGGAGATGGAAATGAGGAGTTCTCGCCCGTGA

mRNA sequence

ATGATGGCGGAGAAACTACCTGGATGTCAGATCCACGCAACGACTGTAATTGACAGTAGAATAAAGACACTGAAGCAGACATTCCAGGCCATCGCCGAAATGCAGGGTTCAGCGTGTAATGACTTTGGGTGGAACGATAAAGAGAAATGTATCATTGCGGAGAAAGGATTATTTGATAATTGGGTTAGGTCGTATCCTGCAGCAAAGGAACTCCTGAACAAACTGTTTTCGTATTACGACGAACTTACATATGTGTTCAGTCGCGATAAGGCAACGGGTCGGTTCGCTGAGACATTTGCCGACGTGGGTCTAACGAGCTTAACGGGTATGACGGATTTGATATGGGAGATGGAAATGAGGAGTTCTCGCCCGTGA

Coding sequence (CDS)

ATGATGGCGGAGAAACTACCTGGATGTCAGATCCACGCAACGACTGTAATTGACAGTAGAATAAAGACACTGAAGCAGACATTCCAGGCCATCGCCGAAATGCAGGGTTCAGCGTGTAATGACTTTGGGTGGAACGATAAAGAGAAATGTATCATTGCGGAGAAAGGATTATTTGATAATTGGGTTAGGTCGTATCCTGCAGCAAAGGAACTCCTGAACAAACTGTTTTCGTATTACGACGAACTTACATATGTGTTCAGTCGCGATAAGGCAACGGGTCGGTTCGCTGAGACATTTGCCGACGTGGGTCTAACGAGCTTAACGGGTATGACGGATTTGATATGGGAGATGGAAATGAGGAGTTCTCGCCCGTGA

Protein sequence

MMAEKLPGCQIHATTVIDSRIKTLKQTFQAIAEMQGSACNDFGWNDKEKCIIAEKGLFDNWVRSYPAAKELLNKLFSYYDELTYVFSRDKATGRFAETFADVGLTSLTGMTDLIWEMEMRSSRP
Homology
BLAST of Pay0014117 vs. ExPASy TrEMBL
Match: A0A1S4DU21 (uncharacterized protein LOC107990554 OS=Cucumis melo OX=3656 GN=LOC107990554 PE=4 SV=1)

HSP 1 Score: 241.5 bits (615), Expect = 1.9e-60
Identity = 115/124 (92.74%), Postives = 118/124 (95.16%), Query Frame = 0

Query: 1   MMAEKLPGCQIHATTVIDSRIKTLKQTFQAIAEMQGSACNDFGWNDKEKCIIAEKGLFDN 60
           MMAEKLPGCQ+HATTVIDSRIKTLKQTFQAIAEM+G AC+  GWNDKEKCIIAEKGLFDN
Sbjct: 1   MMAEKLPGCQVHATTVIDSRIKTLKQTFQAIAEMRGPACSGLGWNDKEKCIIAEKGLFDN 60

Query: 61  WVRSYPAAKELLNKLFSYYDELTYVFSRDKATGRFAETFADVGLTSLTGMTDLIWEMEMR 120
           WVRSYPAAKELLNKLF YYDELTYVF RDKATGRFAETFADVGLTSLTGMTDLIW MEMR
Sbjct: 61  WVRSYPAAKELLNKLFPYYDELTYVFGRDKATGRFAETFADVGLTSLTGMTDLIWGMEMR 120

Query: 121 SSRP 125
           SSRP
Sbjct: 121 SSRP 124

BLAST of Pay0014117 vs. ExPASy TrEMBL
Match: A0A5A7T2E6 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold285G002060 PE=4 SV=1)

HSP 1 Score: 201.1 bits (510), Expect = 2.8e-48
Identity = 97/123 (78.86%), Postives = 105/123 (85.37%), Query Frame = 0

Query: 2   MAEKLPGCQIHATTVIDSRIKTLKQTFQAIAEMQGSACNDFGWNDKEKCIIAEKGLFDNW 61
           MAEKLP CQ+ ATTVID RIKTLK+TFQAIA+M G AC+ FGWND+EKCIIAEK LFDNW
Sbjct: 1   MAEKLPVCQVRATTVIDYRIKTLKRTFQAIAQMWGPACSGFGWNDEEKCIIAEKRLFDNW 60

Query: 62  VRSYPAAKELLNKLFSYYDELTYVFSRDKATGRFAETFADVGLTSLTGMTDLIWEMEMRS 121
           VRS+PAAK LLNKLF YYDELTYV   D   GRFAETFADVGLTSLTGM +LIW ME +S
Sbjct: 61  VRSHPAAKGLLNKLFPYYDELTYVLGCDTVMGRFAETFADVGLTSLTGMANLIWGMETKS 120

Query: 122 SRP 125
           SRP
Sbjct: 121 SRP 123

BLAST of Pay0014117 vs. ExPASy TrEMBL
Match: A0A5A7UNC0 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold288G00650 PE=4 SV=1)

HSP 1 Score: 199.9 bits (507), Expect = 6.2e-48
Identity = 96/125 (76.80%), Postives = 107/125 (85.60%), Query Frame = 0

Query: 1   MMAEKLPGCQIHATTVIDSRIKTLKQTFQAIAEMQGSACNDFGWNDKEKCIIAEKGLFDN 60
           MMAEKLPGCQ+ ATTVID RIKTLK+TFQAIAEM+G AC+ FGWND+EKCI+AEK LFDN
Sbjct: 51  MMAEKLPGCQVRATTVIDCRIKTLKRTFQAIAEMRGPACSGFGWNDEEKCIVAEKELFDN 110

Query: 61  WVRSYPAAKELLNKLFSYYDELTYVFSRDKATGRFAETFADVGLTS-LTGMTDLIWEMEM 120
           WVRS+PAAK LLNK F YYDELTYVF RD+ATGRFAETFA+V     +  MTDLIW ME 
Sbjct: 111 WVRSHPAAKGLLNKPFPYYDELTYVFGRDRATGRFAETFANVASNEPVADMTDLIWGMET 170

Query: 121 RSSRP 125
           R+SRP
Sbjct: 171 RTSRP 175

BLAST of Pay0014117 vs. ExPASy TrEMBL
Match: A0A5D3C970 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold105G001440 PE=4 SV=1)

HSP 1 Score: 198.4 bits (503), Expect = 1.8e-47
Identity = 93/101 (92.08%), Postives = 96/101 (95.05%), Query Frame = 0

Query: 1   MMAEKLPGCQIHATTVIDSRIKTLKQTFQAIAEMQGSACNDFGWNDKEKCIIAEKGLFDN 60
           MMAEKLPGCQ+HATTVIDSRIKTLKQTFQAIAEM+G AC+  GWNDKEKCIIAEKGLFDN
Sbjct: 1   MMAEKLPGCQVHATTVIDSRIKTLKQTFQAIAEMRGPACSGLGWNDKEKCIIAEKGLFDN 60

Query: 61  WVRSYPAAKELLNKLFSYYDELTYVFSRDKATGRFAETFAD 102
           WVRSYPAAKELLNKLF YYDELTYVF RDKATGRFAETFAD
Sbjct: 61  WVRSYPAAKELLNKLFPYYDELTYVFGRDKATGRFAETFAD 101

BLAST of Pay0014117 vs. ExPASy TrEMBL
Match: A0A5A7U3X7 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold13G001660 PE=4 SV=1)

HSP 1 Score: 198.4 bits (503), Expect = 1.8e-47
Identity = 93/101 (92.08%), Postives = 96/101 (95.05%), Query Frame = 0

Query: 1   MMAEKLPGCQIHATTVIDSRIKTLKQTFQAIAEMQGSACNDFGWNDKEKCIIAEKGLFDN 60
           MMAEKLPGCQ+HATTVIDSRIKTLKQTFQAIAEM+G AC+  GWNDKEKCIIAEKGLFDN
Sbjct: 1   MMAEKLPGCQVHATTVIDSRIKTLKQTFQAIAEMRGPACSGLGWNDKEKCIIAEKGLFDN 60

Query: 61  WVRSYPAAKELLNKLFSYYDELTYVFSRDKATGRFAETFAD 102
           WVRSYPAAKELLNKLF YYDELTYVF RDKATGRFAETFAD
Sbjct: 61  WVRSYPAAKELLNKLFPYYDELTYVFGRDKATGRFAETFAD 101

BLAST of Pay0014117 vs. NCBI nr
Match: XP_016899497.1 (PREDICTED: uncharacterized protein LOC107990554 [Cucumis melo])

HSP 1 Score: 241.5 bits (615), Expect = 3.8e-60
Identity = 115/124 (92.74%), Postives = 118/124 (95.16%), Query Frame = 0

Query: 1   MMAEKLPGCQIHATTVIDSRIKTLKQTFQAIAEMQGSACNDFGWNDKEKCIIAEKGLFDN 60
           MMAEKLPGCQ+HATTVIDSRIKTLKQTFQAIAEM+G AC+  GWNDKEKCIIAEKGLFDN
Sbjct: 1   MMAEKLPGCQVHATTVIDSRIKTLKQTFQAIAEMRGPACSGLGWNDKEKCIIAEKGLFDN 60

Query: 61  WVRSYPAAKELLNKLFSYYDELTYVFSRDKATGRFAETFADVGLTSLTGMTDLIWEMEMR 120
           WVRSYPAAKELLNKLF YYDELTYVF RDKATGRFAETFADVGLTSLTGMTDLIW MEMR
Sbjct: 61  WVRSYPAAKELLNKLFPYYDELTYVFGRDKATGRFAETFADVGLTSLTGMTDLIWGMEMR 120

Query: 121 SSRP 125
           SSRP
Sbjct: 121 SSRP 124

BLAST of Pay0014117 vs. NCBI nr
Match: KAA0035539.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 201.1 bits (510), Expect = 5.8e-48
Identity = 97/123 (78.86%), Postives = 105/123 (85.37%), Query Frame = 0

Query: 2   MAEKLPGCQIHATTVIDSRIKTLKQTFQAIAEMQGSACNDFGWNDKEKCIIAEKGLFDNW 61
           MAEKLP CQ+ ATTVID RIKTLK+TFQAIA+M G AC+ FGWND+EKCIIAEK LFDNW
Sbjct: 1   MAEKLPVCQVRATTVIDYRIKTLKRTFQAIAQMWGPACSGFGWNDEEKCIIAEKRLFDNW 60

Query: 62  VRSYPAAKELLNKLFSYYDELTYVFSRDKATGRFAETFADVGLTSLTGMTDLIWEMEMRS 121
           VRS+PAAK LLNKLF YYDELTYV   D   GRFAETFADVGLTSLTGM +LIW ME +S
Sbjct: 61  VRSHPAAKGLLNKLFPYYDELTYVLGCDTVMGRFAETFADVGLTSLTGMANLIWGMETKS 120

Query: 122 SRP 125
           SRP
Sbjct: 121 SRP 123

BLAST of Pay0014117 vs. NCBI nr
Match: KAA0056560.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 199.9 bits (507), Expect = 1.3e-47
Identity = 96/125 (76.80%), Postives = 107/125 (85.60%), Query Frame = 0

Query: 1   MMAEKLPGCQIHATTVIDSRIKTLKQTFQAIAEMQGSACNDFGWNDKEKCIIAEKGLFDN 60
           MMAEKLPGCQ+ ATTVID RIKTLK+TFQAIAEM+G AC+ FGWND+EKCI+AEK LFDN
Sbjct: 51  MMAEKLPGCQVRATTVIDCRIKTLKRTFQAIAEMRGPACSGFGWNDEEKCIVAEKELFDN 110

Query: 61  WVRSYPAAKELLNKLFSYYDELTYVFSRDKATGRFAETFADVGLTS-LTGMTDLIWEMEM 120
           WVRS+PAAK LLNK F YYDELTYVF RD+ATGRFAETFA+V     +  MTDLIW ME 
Sbjct: 111 WVRSHPAAKGLLNKPFPYYDELTYVFGRDRATGRFAETFANVASNEPVADMTDLIWGMET 170

Query: 121 RSSRP 125
           R+SRP
Sbjct: 171 RTSRP 175

BLAST of Pay0014117 vs. NCBI nr
Match: TYK07718.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 198.4 bits (503), Expect = 3.7e-47
Identity = 93/101 (92.08%), Postives = 96/101 (95.05%), Query Frame = 0

Query: 1   MMAEKLPGCQIHATTVIDSRIKTLKQTFQAIAEMQGSACNDFGWNDKEKCIIAEKGLFDN 60
           MMAEKLPGCQ+HATTVIDSRIKTLKQTFQAIAEM+G AC+  GWNDKEKCIIAEKGLFDN
Sbjct: 1   MMAEKLPGCQVHATTVIDSRIKTLKQTFQAIAEMRGPACSGLGWNDKEKCIIAEKGLFDN 60

Query: 61  WVRSYPAAKELLNKLFSYYDELTYVFSRDKATGRFAETFAD 102
           WVRSYPAAKELLNKLF YYDELTYVF RDKATGRFAETFAD
Sbjct: 61  WVRSYPAAKELLNKLFPYYDELTYVFGRDKATGRFAETFAD 101

BLAST of Pay0014117 vs. NCBI nr
Match: KAA0049990.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 198.4 bits (503), Expect = 3.7e-47
Identity = 93/101 (92.08%), Postives = 96/101 (95.05%), Query Frame = 0

Query: 1   MMAEKLPGCQIHATTVIDSRIKTLKQTFQAIAEMQGSACNDFGWNDKEKCIIAEKGLFDN 60
           MMAEKLPGCQ+HATTVIDSRIKTLKQTFQAIAEM+G AC+  GWNDKEKCIIAEKGLFDN
Sbjct: 1   MMAEKLPGCQVHATTVIDSRIKTLKQTFQAIAEMRGPACSGLGWNDKEKCIIAEKGLFDN 60

Query: 61  WVRSYPAAKELLNKLFSYYDELTYVFSRDKATGRFAETFAD 102
           WVRSYPAAKELLNKLF YYDELTYVF RDKATGRFAETFAD
Sbjct: 61  WVRSYPAAKELLNKLFPYYDELTYVFGRDKATGRFAETFAD 101

BLAST of Pay0014117 vs. TAIR 10
Match: AT5G27260.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G29880.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). )

HSP 1 Score: 49.3 bits (116), Expect = 2.6e-06
Identity = 29/93 (31.18%), Postives = 50/93 (53.76%), Query Frame = 0

Query: 19  SRIKTLKQTFQAIAEMQGSACNDFGWNDKEKCIIAEKGLFDNWVRSYPAAKELLNKLFSY 78
           SR+K LK  +Q+  ++Q  + + FGW+   K   A   ++ ++++++P  K+L    F +
Sbjct: 72  SRMKYLKIQYQSCLDLQRFS-SGFGWDPLTKRFTASDEVWSDYLKAHPNNKQLRYDTFEF 131

Query: 79  YDELTYVFSRDKATGRFAETFADV--GLTSLTG 110
           +DEL  +F    ATG+ A    D   GLT   G
Sbjct: 132 FDELQIIFGEGVATGKNAIGLCDSTDGLTYRAG 163

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A1S4DU211.9e-6092.74uncharacterized protein LOC107990554 OS=Cucumis melo OX=3656 GN=LOC107990554 PE=... [more]
A0A5A7T2E62.8e-4878.86Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
A0A5A7UNC06.2e-4876.80Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
A0A5D3C9701.8e-4792.08Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5A7U3X71.8e-4792.08Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
Match NameE-valueIdentityDescription
XP_016899497.13.8e-6092.74PREDICTED: uncharacterized protein LOC107990554 [Cucumis melo][more]
KAA0035539.15.8e-4878.86retrotransposon protein [Cucumis melo var. makuwa][more]
KAA0056560.11.3e-4776.80retrotransposon protein [Cucumis melo var. makuwa][more]
TYK07718.13.7e-4792.08retrotransposon protein [Cucumis melo var. makuwa][more]
KAA0049990.13.7e-4792.08retrotransposon protein [Cucumis melo var. makuwa][more]
Match NameE-valueIdentityDescription
AT5G27260.12.6e-0631.18unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA... [more]
InterPro
Analysis Name: InterPro Annotations of Melon (Payzawat) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR46250MYB/SANT-LIKE DNA-BINDING DOMAIN PROTEIN-RELATEDcoord: 1..102
NoneNo IPR availablePANTHERPTHR46250:SF3MYB/SANT-LIKE DNA-BINDING DOMAIN PROTEINcoord: 1..102

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Pay0014117.1Pay0014117.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0016021 integral component of membrane