Pay0014115 (gene) Melon (Payzawat) v1

Overview


Name	Pay0014115
Type	gene
Organism	Cucumis melo L. var. inodorus cv. Payzawat (Melon (Payzawat) v1)
Description	NAD(P)H-quinone oxidoreductase subunit S, chloroplastic
Location	chr07: 24392004 .. 24393312 (-)
RNA-Seq Expression	Pay0014115
Synteny	Pay0014115

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ACTAAAGAGAAGAGTAAACTTCCAATATTTAAAAAATTTCTAACTTTATAAATTACAGGCTCATTAAATATTTTAATAGGTTTTTATATTCATGAAAATGAATTAATTTGAATAAAGATTAGACAACTTAATTAAAATTTATTTTTAATAAATGGATAAACCCAAACCCATTTCTCGGGTTGGCTAATTTACATTCACAGTCTCACACTCATCTCTGTAATCAGTAGAGTCATATCCATGGCTTCCTCAATCTCCCTTCCATCTCCTCAAACTTCGCTTCTCAAATCCTCCTTCCTCCCCCAAAACCGCCGCCGCCTCCTTCTCCACCGCCCATTCCCCCTGCCCGGCCGTCACGCATCATCAACCCATCACGCTTTCCGGCCCTCCGCCGCCTTCGATTTAGCCCAGCTTCTAGGCGGAAGAGGCCTCTGCAATGGCGAGCGAGGTGTGGAAGAGGAACTCAAGAGAAACGTCGACGACAATCCCGTCATCGCAGATGGAAATGAAATTCCAGAAACCTCCACGAAATTACCCGTTGATAGTGTTCCAGAAGATGGATTCGAGAAGGAATTAATGGGCTTAACCGGTGGATTTCCCGGCGGAGAGAAAGGATTAAAAAAATTCATATCGGAAAATCCTCCTCCTCGGAAACCTTCCGCTTCAAAATCCGGCGAAATCGGCTCGATTTTAAATACAGAGAAACCAAAGCCGCCGGATCTTCCACTGTTGCTACCGGGAATGATTGCGATTGTGAAGAATCCAAACAATCCGTACTACATGTATTGTGGAATCGTTCAGAGAATCACAGATGGAAAAGCTGGGGTTCTTTTTGAAGGAGGAAATTGGGATCGATTGATAACGTTTAGATTGGAGGAGCTGGAACGAAGAGAAAAAGGACCGCCGATGAAGAACCCTAGATCGGCTGTTCTTGAACCGTTTCTTCAAAAGGATTCTCAATGATGATAAACAGATCGGTGATGGCGATTTCTTCTTTATCTTCTTCCTTGTAGTTATCTCATCTGTTTGTTCTTCTGGAATTTCGACTTGGAAAAATTTGTGAATATTTCCAATCCAAGAAACGCCATTTTTCAGTTGTTGTTATTAGAGATTTTTTTAAAGATTAATTACATATTTACTCCTAATTTTATGACTAAACTAAGTCACCAAAATTTTAAACATCCAAGTATACATTTTTTATTTTTTAGTTTTTTGACCCTGAAATTTTAAAATTACCTATTTAATCTCTCAAACCTCGTTTGCTTTTTTCTTTGGTTTTGGAAATTTAGCCCAAATGTTACTTCATTAGTTC

mRNA sequence

ACTAAAGAGAAGAGTAAACTTCCAATATTTAAAAAATTTCTAACTTTATAAATTACAGGCTCATTAAATATTTTAATAGGTTTTTATATTCATGAAAATGAATTAATTTGAATAAAGATTAGACAACTTAATTAAAATTTATTTTTAATAAATGGATAAACCCAAACCCATTTCTCGGGTTGGCTAATTTACATTCACAGTCTCACACTCATCTCTGTAATCAGTAGAGTCATATCCATGGCTTCCTCAATCTCCCTTCCATCTCCTCAAACTTCGCTTCTCAAATCCTCCTTCCTCCCCCAAAACCGCCGCCGCCTCCTTCTCCACCGCCCATTCCCCCTGCCCGGCCGTCACGCATCATCAACCCATCACGCTTTCCGGCCCTCCGCCGCCTTCGATTTAGCCCAGCTTCTAGGCGGAAGAGGCCTCTGCAATGGCGAGCGAGGTGTGGAAGAGGAACTCAAGAGAAACGTCGACGACAATCCCGTCATCGCAGATGGAAATGAAATTCCAGAAACCTCCACGAAATTACCCGTTGATAGTGTTCCAGAAGATGGATTCGAGAAGGAATTAATGGGCTTAACCGGTGGATTTCCCGGCGGAGAGAAAGGATTAAAAAAATTCATATCGGAAAATCCTCCTCCTCGGAAACCTTCCGCTTCAAAATCCGGCGAAATCGGCTCGATTTTAAATACAGAGAAACCAAAGCCGCCGGATCTTCCACTGTTGCTACCGGGAATGATTGCGATTGTGAAGAATCCAAACAATCCGTACTACATGTATTGTGGAATCGTTCAGAGAATCACAGATGGAAAAGCTGGGGTTCTTTTTGAAGGAGGAAATTGGGATCGATTGATAACGTTTAGATTGGAGGAGCTGGAACGAAGAGAAAAAGGACCGCCGATGAAGAACCCTAGATCGGCTGTTCTTGAACCGTTTCTTCAAAAGGATTCTCAATGATGATAAACAGATCGGTGATGGCGATTTCTTCTTTATCTTCTTCCTTGTAGTTATCTCATCTGTTTGTTCTTCTGGAATTTCGACTTGGAAAAATTTGTGAATATTTCCAATCCAAGAAACGCCATTTTTCAGTTGTTGTTATTAGAGATTTTTTTAAAGATTAATTACATATTTACTCCTAATTTTATGACTAAACTAAGTCACCAAAATTTTAAACATCCAAGTATACATTTTTTATTTTTTAGTTTTTTGACCCTGAAATTTTAAAATTACCTATTTAATCTCTCAAACCTCGTTTGCTTTTTTCTTTGGTTTTGGAAATTTAGCCCAAATGTTACTTCATTAGTTC

Coding sequence (CDS)

ATGGCTTCCTCAATCTCCCTTCCATCTCCTCAAACTTCGCTTCTCAAATCCTCCTTCCTCCCCCAAAACCGCCGCCGCCTCCTTCTCCACCGCCCATTCCCCCTGCCCGGCCGTCACGCATCATCAACCCATCACGCTTTCCGGCCCTCCGCCGCCTTCGATTTAGCCCAGCTTCTAGGCGGAAGAGGCCTCTGCAATGGCGAGCGAGGTGTGGAAGAGGAACTCAAGAGAAACGTCGACGACAATCCCGTCATCGCAGATGGAAATGAAATTCCAGAAACCTCCACGAAATTACCCGTTGATAGTGTTCCAGAAGATGGATTCGAGAAGGAATTAATGGGCTTAACCGGTGGATTTCCCGGCGGAGAGAAAGGATTAAAAAAATTCATATCGGAAAATCCTCCTCCTCGGAAACCTTCCGCTTCAAAATCCGGCGAAATCGGCTCGATTTTAAATACAGAGAAACCAAAGCCGCCGGATCTTCCACTGTTGCTACCGGGAATGATTGCGATTGTGAAGAATCCAAACAATCCGTACTACATGTATTGTGGAATCGTTCAGAGAATCACAGATGGAAAAGCTGGGGTTCTTTTTGAAGGAGGAAATTGGGATCGATTGATAACGTTTAGATTGGAGGAGCTGGAACGAAGAGAAAAAGGACCGCCGATGAAGAACCCTAGATCGGCTGTTCTTGAACCGTTTCTTCAAAAGGATTCTCAATGA

Protein sequence

MASSISLPSPQTSLLKSSFLPQNRRRLLLHRPFPLPGRHASSTHHAFRPSAAFDLAQLLGGRGLCNGERGVEEELKRNVDDNPVIADGNEIPETSTKLPVDSVPEDGFEKELMGLTGGFPGGEKGLKKFISENPPPRKPSASKSGEIGSILNTEKPKPPDLPLLLPGMIAIVKNPNNPYYMYCGIVQRITDGKAGVLFEGGNWDRLITFRLEELERREKGPPMKNPRSAVLEPFLQKDSQ

Homology

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BLAST of Pay0014115 vs. ExPASy Swiss-Prot
Match: Q9T0A4 (NAD(P)H-quinone oxidoreductase subunit S, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=ndhS PE=1 SV=1)

HSP 1 Score: 263.1 bits (671), Expect = 3.1e-69
Identity = 137/241 (56.85%), Postives = 176/241 (73.03%), Query Frame = 0


Query: 3   SSISLPSPQTSLLKSSFLPQNRRRLLLHRP-FPLPGRHASSTHHAFRPSAAFDLAQLLGG 62
           SSI++P+ +T + +S FL Q  +   ++R  FP P +   S  +  +    F+L +++GG
Sbjct: 4   SSITIPTIRTPIHRSKFLGQTHQFSTVNRSVFPPPKQ--QSKLYQVKAMGKFNLWEVMGG 63

Query: 63  RGLCNGERGVEEELKRNVDDNPVI--ADGNEIPETSTKLPVD-SVPEDGFEKELMGLTGG 122
           RGLCNGE+G+E+EL+RN++D      A+ NE    S    +   VPEDGFEKE+MGLTGG
Sbjct: 64  RGLCNGEKGIEKELQRNIEDEQETSKAENNETERESDDSNLSFKVPEDGFEKEMMGLTGG 123

Query: 123 FPGGEKGLKKFISEN--PPPRKPSASKSGEIGSILNTEKPKPPDLPLLLPGMIAIVKNPN 182
           FPGGEKGLK FI +N  PPP  P A +  +  ++   +KPK P LPLL+PGMIAIVKN N
Sbjct: 124 FPGGEKGLKTFIEKNPPPPPPPPPAKQGSDASAVATDKKPKAPKLPLLMPGMIAIVKNQN 183

Query: 183 NPYYMYCGIVQRITDGKAGVLFEGGNWDRLITFRLEELERREKGPPMKNPRSAVLEPFLQ 238
           +PY+MYCGIVQRITDGKAGVLFEGGNWDRLITFRLEELERREKGPP KNP+S +LEP ++
Sbjct: 184 SPYHMYCGIVQRITDGKAGVLFEGGNWDRLITFRLEELERREKGPPGKNPKSCILEPLIE 242

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BLAST of Pay0014115 vs. ExPASy TrEMBL
Match: A0A5D3CYY1 (NAD(P)H-quinone oxidoreductase subunit S OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold21G003910 PE=4 SV=1)

HSP 1 Score: 483.8 bits (1244), Expect = 4.2e-133
Identity = 239/240 (99.58%), Postives = 239/240 (99.58%), Query Frame = 0


Query: 1   MASSISLPSPQTSLLKSSFLPQNRRRLLLHRPFPLPGRHASSTHHAFRPSAAFDLAQLLG 60
           MASSISLPSPQT LLKSSFLPQNRRRLLLHRPFPLPGRHASSTHHAFRPSAAFDLAQLLG
Sbjct: 1   MASSISLPSPQTPLLKSSFLPQNRRRLLLHRPFPLPGRHASSTHHAFRPSAAFDLAQLLG 60

Query: 61  GRGLCNGERGVEEELKRNVDDNPVIADGNEIPETSTKLPVDSVPEDGFEKELMGLTGGFP 120
           GRGLCNGERGVEEELKRNVDDNPVIADGNEIPETSTKLPVDSVPEDGFEKELMGLTGGFP
Sbjct: 61  GRGLCNGERGVEEELKRNVDDNPVIADGNEIPETSTKLPVDSVPEDGFEKELMGLTGGFP 120

Query: 121 GGEKGLKKFISENPPPRKPSASKSGEIGSILNTEKPKPPDLPLLLPGMIAIVKNPNNPYY 180
           GGEKGLKKFISENPPPRKPSASKSGEIGSILNTEKPKPPDLPLLLPGMIAIVKNPNNPYY
Sbjct: 121 GGEKGLKKFISENPPPRKPSASKSGEIGSILNTEKPKPPDLPLLLPGMIAIVKNPNNPYY 180

Query: 181 MYCGIVQRITDGKAGVLFEGGNWDRLITFRLEELERREKGPPMKNPRSAVLEPFLQKDSQ 240
           MYCGIVQRITDGKAGVLFEGGNWDRLITFRLEELERREKGPPMKNPRSAVLEPFLQKDSQ
Sbjct: 181 MYCGIVQRITDGKAGVLFEGGNWDRLITFRLEELERREKGPPMKNPRSAVLEPFLQKDSQ 240

[Close]

BLAST of Pay0014115 vs. ExPASy TrEMBL
Match: A0A1S3BSR5 (NAD(P)H-quinone oxidoreductase subunit S, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103493099 PE=4 SV=1)

HSP 1 Score: 483.8 bits (1244), Expect = 4.2e-133
Identity = 239/240 (99.58%), Postives = 239/240 (99.58%), Query Frame = 0


Query: 1   MASSISLPSPQTSLLKSSFLPQNRRRLLLHRPFPLPGRHASSTHHAFRPSAAFDLAQLLG 60
           MASSISLPSPQT LLKSSFLPQNRRRLLLHRPFPLPGRHASSTHHAFRPSAAFDLAQLLG
Sbjct: 1   MASSISLPSPQTPLLKSSFLPQNRRRLLLHRPFPLPGRHASSTHHAFRPSAAFDLAQLLG 60

Query: 61  GRGLCNGERGVEEELKRNVDDNPVIADGNEIPETSTKLPVDSVPEDGFEKELMGLTGGFP 120
           GRGLCNGERGVEEELKRNVDDNPVIADGNEIPETSTKLPVDSVPEDGFEKELMGLTGGFP
Sbjct: 61  GRGLCNGERGVEEELKRNVDDNPVIADGNEIPETSTKLPVDSVPEDGFEKELMGLTGGFP 120

Query: 121 GGEKGLKKFISENPPPRKPSASKSGEIGSILNTEKPKPPDLPLLLPGMIAIVKNPNNPYY 180
           GGEKGLKKFISENPPPRKPSASKSGEIGSILNTEKPKPPDLPLLLPGMIAIVKNPNNPYY
Sbjct: 121 GGEKGLKKFISENPPPRKPSASKSGEIGSILNTEKPKPPDLPLLLPGMIAIVKNPNNPYY 180

Query: 181 MYCGIVQRITDGKAGVLFEGGNWDRLITFRLEELERREKGPPMKNPRSAVLEPFLQKDSQ 240
           MYCGIVQRITDGKAGVLFEGGNWDRLITFRLEELERREKGPPMKNPRSAVLEPFLQKDSQ
Sbjct: 181 MYCGIVQRITDGKAGVLFEGGNWDRLITFRLEELERREKGPPMKNPRSAVLEPFLQKDSQ 240

[Close]

BLAST of Pay0014115 vs. ExPASy TrEMBL
Match: A0A0A0KV29 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G052580 PE=4 SV=1)

HSP 1 Score: 446.0 bits (1146), Expect = 9.6e-122
Identity = 219/236 (92.80%), Postives = 228/236 (96.61%), Query Frame = 0


Query: 1   MASSISLPSPQTSLLKSSFLPQNRRRLLLHRPFPLPGRHASSTHHAFRPSAAFDLAQLLG 60
           MASSISLPSPQT LLKSSFLPQNRRRLLLHRPFPLPGRHASST HAFRPSAAFDLAQLLG
Sbjct: 3   MASSISLPSPQTPLLKSSFLPQNRRRLLLHRPFPLPGRHASSTQHAFRPSAAFDLAQLLG 62

Query: 61  GRGLCNGERGVEEELKRNVDDNPVIADGNEIPETSTKLPVDSVPEDGFEKELMGLTGGFP 120
           GRGLCNGE+G++EELKRNVDDNPV+ADG+EIP TS KLPVDSVPEDGFEKELMGLTGGFP
Sbjct: 63  GRGLCNGEQGLKEELKRNVDDNPVLADGSEIPGTSDKLPVDSVPEDGFEKELMGLTGGFP 122

Query: 121 GGEKGLKKFISENPPPRKPSASKSGEIGSILNTEKPKPPDLPLLLPGMIAIVKNPNNPYY 180
           GGEKGLKKFISENPPPRKPSASKSGEIGSI+NT+KPKPPDLPLLLPGMIAIVKNPNNPYY
Sbjct: 123 GGEKGLKKFISENPPPRKPSASKSGEIGSIINTQKPKPPDLPLLLPGMIAIVKNPNNPYY 182

Query: 181 MYCGIVQRITDGKAGVLFEGGNWDRLITFRLEELERREKGPPMKNPRSAVLEPFLQ 237
           MYCGIVQRITDGKAGVLFEGGNWDRLITFRLEELERREKGPPMKNP+SA   P L+
Sbjct: 183 MYCGIVQRITDGKAGVLFEGGNWDRLITFRLEELERREKGPPMKNPKSAGGGPLLR 238

[Close]

BLAST of Pay0014115 vs. ExPASy TrEMBL
Match: A0A6J1IWU0 (NAD(P)H-quinone oxidoreductase subunit S, chloroplastic OS=Cucurbita maxima OX=3661 GN=LOC111481312 PE=4 SV=1)

HSP 1 Score: 385.2 bits (988), Expect = 2.0e-103
Identity = 197/242 (81.40%), Postives = 215/242 (88.84%), Query Frame = 0


Query: 1   MASSISLPSPQTSLLKSSFLPQNRRRLLLHRPFPLPGRHASSTHHAFRPSAAFDLAQLLG 60
           MASSISLPSPQ+ LLKS+FL +  RR  LHR FPLP R AS +HH FRPSAAFDLAQLLG
Sbjct: 1   MASSISLPSPQSPLLKSTFLGRTTRRFHLHRQFPLP-RRASPSHHTFRPSAAFDLAQLLG 60

Query: 61  GRGLCNGERGVEEELKRNVDDNPVIADGNEIPETSTKLPVDSVPEDGFEKELMGLTGGFP 120
           GRGLCNGE+G++EELKRNV +  +   G EIPET+ KL VD VPEDGF+KELMGLTGGFP
Sbjct: 61  GRGLCNGEKGLKEELKRNVVEETI---GAEIPETTEKLAVDKVPEDGFDKELMGLTGGFP 120

Query: 121 GGEKGLKKFISEN--PPPRKPSASKSGEIGSILNTEKPKPPDLPLLLPGMIAIVKNPNNP 180
           GGEKGL+KFI+EN  PPP KPSASKS EIG+I +++KPKPPDLPLLLPGMIAIVKNPN+P
Sbjct: 121 GGEKGLRKFITENPPPPPPKPSASKSVEIGAIPSSQKPKPPDLPLLLPGMIAIVKNPNSP 180

Query: 181 YYMYCGIVQRITDGKAGVLFEGGNWDRLITFRLEELERREKGPPMKNPRSAVLEPFLQKD 240
           YYMYCGIVQRITDGKAGVLFEGGNWDRLITFRLEELERREKGPPMKNPRSAVLEP LQKD
Sbjct: 181 YYMYCGIVQRITDGKAGVLFEGGNWDRLITFRLEELERREKGPPMKNPRSAVLEPLLQKD 238

[Close]

BLAST of Pay0014115 vs. ExPASy TrEMBL
Match: A0A6J1FWM0 (NAD(P)H-quinone oxidoreductase subunit S, chloroplastic OS=Cucurbita moschata OX=3662 GN=LOC111448039 PE=4 SV=1)

HSP 1 Score: 380.2 bits (975), Expect = 6.5e-102
Identity = 196/242 (80.99%), Postives = 212/242 (87.60%), Query Frame = 0


Query: 1   MASSISLPSPQTSLLKSSFLPQNRRRLLLHRPFPLPGRHASSTHHAFRPSAAFDLAQLLG 60
           MASSISLPSPQ+ LLKS+FL +  RR  LHR FPLP R A  +HH  RPSAAFDLAQLLG
Sbjct: 1   MASSISLPSPQSPLLKSTFLGRTTRRFHLHRQFPLP-RRALPSHHTSRPSAAFDLAQLLG 60

Query: 61  GRGLCNGERGVEEELKRNVDDNPVIADGNEIPETSTKLPVDSVPEDGFEKELMGLTGGFP 120
           GRGLCNGE+G+ EELKRNV +  +   G EIPET+ KL VD VPEDGF+KELMGLTGGFP
Sbjct: 61  GRGLCNGEKGLNEELKRNVVEETI---GAEIPETTEKLAVDKVPEDGFDKELMGLTGGFP 120

Query: 121 GGEKGLKKFISEN--PPPRKPSASKSGEIGSILNTEKPKPPDLPLLLPGMIAIVKNPNNP 180
           GGEKGL+KFISEN  PPP KPSASKS EIG+I +++KPKPPDLPLLLPGMIAIVKNPN+P
Sbjct: 121 GGEKGLRKFISENPPPPPPKPSASKSIEIGAIPSSQKPKPPDLPLLLPGMIAIVKNPNSP 180

Query: 181 YYMYCGIVQRITDGKAGVLFEGGNWDRLITFRLEELERREKGPPMKNPRSAVLEPFLQKD 240
           YYMYCGIVQRITDGKAGVLFEGGNWDRLITFRLEELERREKGPPMKNPRSAVLEP LQKD
Sbjct: 181 YYMYCGIVQRITDGKAGVLFEGGNWDRLITFRLEELERREKGPPMKNPRSAVLEPLLQKD 238

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BLAST of Pay0014115 vs. NCBI nr
Match: XP_008451952.1 (PREDICTED: NAD(P)H-quinone oxidoreductase subunit S, chloroplastic [Cucumis melo] >KAA0044900.1 NAD(P)H-quinone oxidoreductase subunit S [Cucumis melo var. makuwa] >TYK16570.1 NAD(P)H-quinone oxidoreductase subunit S [Cucumis melo var. makuwa])

HSP 1 Score: 483.8 bits (1244), Expect = 8.6e-133
Identity = 239/240 (99.58%), Postives = 239/240 (99.58%), Query Frame = 0


Query: 1   MASSISLPSPQTSLLKSSFLPQNRRRLLLHRPFPLPGRHASSTHHAFRPSAAFDLAQLLG 60
           MASSISLPSPQT LLKSSFLPQNRRRLLLHRPFPLPGRHASSTHHAFRPSAAFDLAQLLG
Sbjct: 1   MASSISLPSPQTPLLKSSFLPQNRRRLLLHRPFPLPGRHASSTHHAFRPSAAFDLAQLLG 60

Query: 61  GRGLCNGERGVEEELKRNVDDNPVIADGNEIPETSTKLPVDSVPEDGFEKELMGLTGGFP 120
           GRGLCNGERGVEEELKRNVDDNPVIADGNEIPETSTKLPVDSVPEDGFEKELMGLTGGFP
Sbjct: 61  GRGLCNGERGVEEELKRNVDDNPVIADGNEIPETSTKLPVDSVPEDGFEKELMGLTGGFP 120

Query: 121 GGEKGLKKFISENPPPRKPSASKSGEIGSILNTEKPKPPDLPLLLPGMIAIVKNPNNPYY 180
           GGEKGLKKFISENPPPRKPSASKSGEIGSILNTEKPKPPDLPLLLPGMIAIVKNPNNPYY
Sbjct: 121 GGEKGLKKFISENPPPRKPSASKSGEIGSILNTEKPKPPDLPLLLPGMIAIVKNPNNPYY 180

Query: 181 MYCGIVQRITDGKAGVLFEGGNWDRLITFRLEELERREKGPPMKNPRSAVLEPFLQKDSQ 240
           MYCGIVQRITDGKAGVLFEGGNWDRLITFRLEELERREKGPPMKNPRSAVLEPFLQKDSQ
Sbjct: 181 MYCGIVQRITDGKAGVLFEGGNWDRLITFRLEELERREKGPPMKNPRSAVLEPFLQKDSQ 240

[Close]

BLAST of Pay0014115 vs. NCBI nr
Match: XP_004148998.1 (NAD(P)H-quinone oxidoreductase subunit S, chloroplastic [Cucumis sativus] >KAE8649207.1 hypothetical protein Csa_014581 [Cucumis sativus])

HSP 1 Score: 463.4 bits (1191), Expect = 1.2e-126
Identity = 227/240 (94.58%), Postives = 235/240 (97.92%), Query Frame = 0


Query: 1   MASSISLPSPQTSLLKSSFLPQNRRRLLLHRPFPLPGRHASSTHHAFRPSAAFDLAQLLG 60
           MASSISLPSPQT LLKSSFLPQNRRRLLLHRPFPLPGRHASST HAFRPSAAFDLAQLLG
Sbjct: 3   MASSISLPSPQTPLLKSSFLPQNRRRLLLHRPFPLPGRHASSTQHAFRPSAAFDLAQLLG 62

Query: 61  GRGLCNGERGVEEELKRNVDDNPVIADGNEIPETSTKLPVDSVPEDGFEKELMGLTGGFP 120
           GRGLCNGE+G++EELKRNVDDNPV+ADG+EIP TS KLPVDSVPEDGFEKELMGLTGGFP
Sbjct: 63  GRGLCNGEQGLKEELKRNVDDNPVLADGSEIPGTSDKLPVDSVPEDGFEKELMGLTGGFP 122

Query: 121 GGEKGLKKFISENPPPRKPSASKSGEIGSILNTEKPKPPDLPLLLPGMIAIVKNPNNPYY 180
           GGEKGLKKFISENPPPRKPSASKSGEIGSI+NT+KPKPPDLPLLLPGMIAIVKNPNNPYY
Sbjct: 123 GGEKGLKKFISENPPPRKPSASKSGEIGSIINTQKPKPPDLPLLLPGMIAIVKNPNNPYY 182

Query: 181 MYCGIVQRITDGKAGVLFEGGNWDRLITFRLEELERREKGPPMKNPRSAVLEPFLQKDSQ 240
           MYCGIVQRITDGKAGVLFEGGNWDRLITFRLEELERREKGPPMKNP+SAVLEP LQKDSQ
Sbjct: 183 MYCGIVQRITDGKAGVLFEGGNWDRLITFRLEELERREKGPPMKNPKSAVLEPLLQKDSQ 242

[Close]

BLAST of Pay0014115 vs. NCBI nr
Match: XP_038902579.1 (NAD(P)H-quinone oxidoreductase subunit S, chloroplastic [Benincasa hispida] >XP_038902587.1 NAD(P)H-quinone oxidoreductase subunit S, chloroplastic [Benincasa hispida] >XP_038902595.1 NAD(P)H-quinone oxidoreductase subunit S, chloroplastic [Benincasa hispida] >XP_038902601.1 NAD(P)H-quinone oxidoreductase subunit S, chloroplastic [Benincasa hispida] >XP_038902605.1 NAD(P)H-quinone oxidoreductase subunit S, chloroplastic [Benincasa hispida])

HSP 1 Score: 420.2 bits (1079), Expect = 1.2e-113
Identity = 214/243 (88.07%), Postives = 224/243 (92.18%), Query Frame = 0


Query: 1   MASSISLPSPQTSLLKSSFLPQNRRRLLLHRPFPLPGRHASSTHHAFRPSAAFDLAQLLG 60
           MASSISLP+PQT LLKS+FL QNRRR LLHRPFPLP R AS THHAFRPSAAFDLAQLLG
Sbjct: 1   MASSISLPTPQTPLLKSTFLGQNRRRFLLHRPFPLPHR-ASPTHHAFRPSAAFDLAQLLG 60

Query: 61  GRGLCNGERGVEEELKRNVDDNPVIADGNEIPETSTKLPVDSVPEDGFEKELMGLTGGFP 120
           GRGLCNGERG++EELKRNV+DNPV ADG EIPETS KL VD VPEDGFEKELMGLTGGFP
Sbjct: 61  GRGLCNGERGLKEELKRNVEDNPV-ADGGEIPETSEKLAVDRVPEDGFEKELMGLTGGFP 120

Query: 121 GGEKGLKKFISENPPP---RKPSASKSGEIGSILNTEKPKPPDLPLLLPGMIAIVKNPNN 180
           GGEKGL+KFISENPPP    KPSAS S EIG+IL+++KPKPPDLPLLLPGMIAIVKNPNN
Sbjct: 121 GGEKGLRKFISENPPPPPRPKPSASNSSEIGAILSSQKPKPPDLPLLLPGMIAIVKNPNN 180

Query: 181 PYYMYCGIVQRITDGKAGVLFEGGNWDRLITFRLEELERREKGPPMKNPRSAVLEPFLQK 240
           PYYMYCGIVQRITDGKAGVLFEGGNWDRLITFRLEELERREKGPPMKNPRSAVLEP LQ 
Sbjct: 181 PYYMYCGIVQRITDGKAGVLFEGGNWDRLITFRLEELERREKGPPMKNPRSAVLEPLLQN 240

[Close]

BLAST of Pay0014115 vs. NCBI nr
Match: XP_023553886.1 (NAD(P)H-quinone oxidoreductase subunit S, chloroplastic [Cucurbita pepo subsp. pepo])

HSP 1 Score: 386.3 bits (991), Expect = 1.9e-103
Identity = 198/242 (81.82%), Postives = 215/242 (88.84%), Query Frame = 0


Query: 1   MASSISLPSPQTSLLKSSFLPQNRRRLLLHRPFPLPGRHASSTHHAFRPSAAFDLAQLLG 60
           MASSISLPSPQ+ LLKS+FL Q  RR  LHR FPLP R AS +HH FRPSA+FDLAQLLG
Sbjct: 1   MASSISLPSPQSPLLKSTFLGQTTRRFHLHRQFPLP-RRASPSHHTFRPSASFDLAQLLG 60

Query: 61  GRGLCNGERGVEEELKRNVDDNPVIADGNEIPETSTKLPVDSVPEDGFEKELMGLTGGFP 120
           GRGLCNGE+G++EELKRNV +  +   G EIPET+ KL VD VPEDGF+KELMGLTGGFP
Sbjct: 61  GRGLCNGEKGLKEELKRNVVEETI---GAEIPETTEKLAVDKVPEDGFDKELMGLTGGFP 120

Query: 121 GGEKGLKKFISEN--PPPRKPSASKSGEIGSILNTEKPKPPDLPLLLPGMIAIVKNPNNP 180
           GGEKGL+KFISEN  PPP KPSASKS EIG+I +++KPKPPDLPLLLPGMIAIVKNPN+P
Sbjct: 121 GGEKGLRKFISENPPPPPPKPSASKSIEIGAIPSSQKPKPPDLPLLLPGMIAIVKNPNSP 180

Query: 181 YYMYCGIVQRITDGKAGVLFEGGNWDRLITFRLEELERREKGPPMKNPRSAVLEPFLQKD 240
           YYMYCGIVQRITDGKAGVLFEGGNWDRLITFRLEELERREKGPPMKNPRSAVLEP LQKD
Sbjct: 181 YYMYCGIVQRITDGKAGVLFEGGNWDRLITFRLEELERREKGPPMKNPRSAVLEPLLQKD 238

[Close]

BLAST of Pay0014115 vs. NCBI nr
Match: XP_022982522.1 (NAD(P)H-quinone oxidoreductase subunit S, chloroplastic [Cucurbita maxima])

HSP 1 Score: 385.2 bits (988), Expect = 4.2e-103
Identity = 197/242 (81.40%), Postives = 215/242 (88.84%), Query Frame = 0


Query: 1   MASSISLPSPQTSLLKSSFLPQNRRRLLLHRPFPLPGRHASSTHHAFRPSAAFDLAQLLG 60
           MASSISLPSPQ+ LLKS+FL +  RR  LHR FPLP R AS +HH FRPSAAFDLAQLLG
Sbjct: 1   MASSISLPSPQSPLLKSTFLGRTTRRFHLHRQFPLP-RRASPSHHTFRPSAAFDLAQLLG 60

Query: 61  GRGLCNGERGVEEELKRNVDDNPVIADGNEIPETSTKLPVDSVPEDGFEKELMGLTGGFP 120
           GRGLCNGE+G++EELKRNV +  +   G EIPET+ KL VD VPEDGF+KELMGLTGGFP
Sbjct: 61  GRGLCNGEKGLKEELKRNVVEETI---GAEIPETTEKLAVDKVPEDGFDKELMGLTGGFP 120

Query: 121 GGEKGLKKFISEN--PPPRKPSASKSGEIGSILNTEKPKPPDLPLLLPGMIAIVKNPNNP 180
           GGEKGL+KFI+EN  PPP KPSASKS EIG+I +++KPKPPDLPLLLPGMIAIVKNPN+P
Sbjct: 121 GGEKGLRKFITENPPPPPPKPSASKSVEIGAIPSSQKPKPPDLPLLLPGMIAIVKNPNSP 180

Query: 181 YYMYCGIVQRITDGKAGVLFEGGNWDRLITFRLEELERREKGPPMKNPRSAVLEPFLQKD 240
           YYMYCGIVQRITDGKAGVLFEGGNWDRLITFRLEELERREKGPPMKNPRSAVLEP LQKD
Sbjct: 181 YYMYCGIVQRITDGKAGVLFEGGNWDRLITFRLEELERREKGPPMKNPRSAVLEPLLQKD 238

[Close]

BLAST of Pay0014115 vs. TAIR 10
Match: AT4G23890.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast thylakoid membrane, chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF3252 (InterPro:IPR021659); Has 287 Blast hits to 287 proteins in 81 species: Archae - 0; Bacteria - 118; Metazoa - 12; Fungi - 6; Plants - 40; Viruses - 0; Other Eukaryotes - 111 (source: NCBI BLink). )

HSP 1 Score: 263.1 bits (671), Expect = 2.2e-70
Identity = 137/241 (56.85%), Postives = 176/241 (73.03%), Query Frame = 0


Query: 3   SSISLPSPQTSLLKSSFLPQNRRRLLLHRP-FPLPGRHASSTHHAFRPSAAFDLAQLLGG 62
           SSI++P+ +T + +S FL Q  +   ++R  FP P +   S  +  +    F+L +++GG
Sbjct: 4   SSITIPTIRTPIHRSKFLGQTHQFSTVNRSVFPPPKQ--QSKLYQVKAMGKFNLWEVMGG 63

Query: 63  RGLCNGERGVEEELKRNVDDNPVI--ADGNEIPETSTKLPVD-SVPEDGFEKELMGLTGG 122
           RGLCNGE+G+E+EL+RN++D      A+ NE    S    +   VPEDGFEKE+MGLTGG
Sbjct: 64  RGLCNGEKGIEKELQRNIEDEQETSKAENNETERESDDSNLSFKVPEDGFEKEMMGLTGG 123

Query: 123 FPGGEKGLKKFISEN--PPPRKPSASKSGEIGSILNTEKPKPPDLPLLLPGMIAIVKNPN 182
           FPGGEKGLK FI +N  PPP  P A +  +  ++   +KPK P LPLL+PGMIAIVKN N
Sbjct: 124 FPGGEKGLKTFIEKNPPPPPPPPPAKQGSDASAVATDKKPKAPKLPLLMPGMIAIVKNQN 183

Query: 183 NPYYMYCGIVQRITDGKAGVLFEGGNWDRLITFRLEELERREKGPPMKNPRSAVLEPFLQ 238
           +PY+MYCGIVQRITDGKAGVLFEGGNWDRLITFRLEELERREKGPP KNP+S +LEP ++
Sbjct: 184 SPYHMYCGIVQRITDGKAGVLFEGGNWDRLITFRLEELERREKGPPGKNPKSCILEPLIE 242

The following BLAST results are available for this feature:

BLAST of Pay0014115 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9T0A4	3.1e-69	56.85	NAD(P)H-quinone oxidoreductase subunit S, chloroplastic OS=Arabidopsis thaliana ...	[more]

BLAST of Pay0014115 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3CYY1	4.2e-133	99.58	NAD(P)H-quinone oxidoreductase subunit S OS=Cucumis melo var. makuwa OX=1194695 ...	[more]
A0A1S3BSR5	4.2e-133	99.58	NAD(P)H-quinone oxidoreductase subunit S, chloroplastic OS=Cucumis melo OX=3656 ...	[more]
A0A0A0KV29	9.6e-122	92.80	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G052580 PE=4 SV=1	[more]
A0A6J1IWU0	2.0e-103	81.40	NAD(P)H-quinone oxidoreductase subunit S, chloroplastic OS=Cucurbita maxima OX=3...	[more]
A0A6J1FWM0	6.5e-102	80.99	NAD(P)H-quinone oxidoreductase subunit S, chloroplastic OS=Cucurbita moschata OX...	[more]

BLAST of Pay0014115 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008451952.1	8.6e-133	99.58	PREDICTED: NAD(P)H-quinone oxidoreductase subunit S, chloroplastic [Cucumis melo...	[more]
XP_004148998.1	1.2e-126	94.58	NAD(P)H-quinone oxidoreductase subunit S, chloroplastic [Cucumis sativus] >KAE86...	[more]
XP_038902579.1	1.2e-113	88.07	NAD(P)H-quinone oxidoreductase subunit S, chloroplastic [Benincasa hispida] >XP_...	[more]
XP_023553886.1	1.9e-103	81.82	NAD(P)H-quinone oxidoreductase subunit S, chloroplastic [Cucurbita pepo subsp. p...	[more]
XP_022982522.1	4.2e-103	81.40	NAD(P)H-quinone oxidoreductase subunit S, chloroplastic [Cucurbita maxima]	[more]

BLAST of Pay0014115 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G23890.1	2.2e-70	56.85	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (Payzawat) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR021659	NADH dehydrogenase-like complex, subunit S	PFAM	PF11623	NdhS	coord: 164..215 e-value: 9.0E-29 score: 98.8
IPR021659	NADH dehydrogenase-like complex, subunit S	PANTHER	PTHR35494	NAD(P)H-QUINONE OXIDOREDUCTASE SUBUNIT S, CHLOROPLASTIC	coord: 1..239
None	No IPR available	GENE3D	2.30.30.140		coord: 159..228 e-value: 6.3E-33 score: 114.0
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 216..240
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 75..102
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 123..157
None	No IPR available	PANTHER	PTHR35494:SF1	NAD(P)H-QUINONE OXIDOREDUCTASE SUBUNIT S, CHLOROPLASTIC	coord: 1..239

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Pay0014115.1	Pay0014115.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009767	photosynthetic electron transport chain
cellular_component	GO:0009535	chloroplast thylakoid membrane
cellular_component	GO:0010598	NAD(P)H dehydrogenase complex (plastoquinone)