Pay0014044 (gene) Melon (Payzawat) v1

Overview


Name	Pay0014044
Type	gene
Organism	Cucumis melo L. var. inodorus cv. Payzawat (Melon (Payzawat) v1)
Description	Coatomer, beta' subunit
Location	chr03: 26237567 .. 26239424 (-)
RNA-Seq Expression	Pay0014044
Synteny	Pay0014044

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCGATTGGAAAGGTTCCTTTCCTCATTTTGAACTGTTGCAAGCGCTCATTTTTTGTGTATGTCGATTGACATTTGTTTTCTTGATTTGTTCCTTTGTTTCATTTGCAGTTGGACATGGCCGAGGAATGTTTGAAGTATGCTGTAGATTATAGTGGTTTGTTATTGTTGTACTCTTCCCTAGGAGACGCTCAAGGCATATCACAACTTGCAACCCTTGCCAAGGAGCAAGGAAAGAACAACGTTGCATTCCTTTGTTTATTTGTGTTGGGTAAATTGGAAGACTGCCTTCAGTTGTTAGTAGAAAGGTAAAAAACAAGAAAAATCTTCTTGCACATCATCCTCATGTTGAATAAAGTTAATTTTATATTGTATAACTTAAAAAACATCCTCATGTTGAATAAAGTTAATTTTATATTGTATAACTTAAAAAACATACAATGTGTATGTATAATTTTTTGACAGTAATCGGATTCCAGAAGCTGCTTTGATGGTTCGATCTTATCTTCCAAGCAAGGTATCAGAGATAGTTGCAATTTGGAGGAAAGACCTGAGTAAGGTAAACTAGATGGTTACCTCTCTGTTGATGTTCTATTTATTTAAACTAGTTCATAACATGCGAGATGGATGTACAATTTATAGTTTATGGAAATTATGAAAATTTTGAAAATTTTAAGAGCAAAATAGGAAAACATTCTTTTCCATAACCCCATTTATAAAATAGGAACAAGAATTTTGATTTCTTTCTTTTTATACACGATTTGTACTAATTGTAAACTAAAGATTTTCAATCACTGAACCAATATTTGTAACACAATAGTATACTATGCATAATTAAGTATAAAGATATATAACAGTTACTCTTCATTGTCTAAAATAAGTTCTTGATTTTTTCAAAGCTTCGTTATGACATGGTTCCGTAGCTCCTTTACGAAGAACAAAACTTTTTAATCTTCATTATTTATAATGGTTTGAGTGTTCTAATTTATGGTATCACTTGCATCTTGATAATTTGAAAAGGACCATATTTGTATTGACAATGATTTTTAAATTATTTTTTATATTATGGATCGCAACCACACATATGTGAATGGATTCGCCAATTTAATTTATAGCTTTTACTTGGATAGTTGCCTCCTATTAGCATCAATTGTGCTTACTGGACCAAAAAACACTTTACATACTAACTGCTTCTCAAATTTCCATTAGTGAAGTTTTGGATTACAAGGTTTTTCTGTTTTGGTACCCCTATATAATTTACTGACTTCTACAAGTTCTTTACTTGTTAGTGAATTATTACCTAGTTGTGGCCATTTCCAATATGTATTCCTACCGCATAGGCCAAGAAAAACCAATCCAAAATTCTACTTTTGGCCATCAATTATTTGCTCTTTAATTAGCTTTTTTCTACACTTGGAAGTAGATCATACTCATTCTGAGAATGGGAAGATTGGATTTTTGTCTGTAAAAGTTGGATTGGAGTATTCTTTCTCAGGTTATAGATAGTGAACATATGAGAAATTAGATATTGATTATAGCTATATTGGTTATGGAGTTGTTTGCTGTTTTGCTTTGTAATGTGGTTATGTTGTTCAAATCAGATTCTTGTTTTTGATGGCTCTATTGTAATAATTGTTGTTTAGCCATAAGAACACCCAAGAGATATATTGTTTTCTTTTCTGTGTAATCAAGCAAATCACAAGCACCAAATAATATGTAGGAAATTGATGGTTCAAGTTCAAGCTTCAGTCAACTGTTTGGAATTGAAGGTATTATACAAAAAAGTTTATCTTACCATGTTTCTCAATTTTTTTTTTAGGAAGACTTGAATGAACAAGCTACAATATTATCTTGGTAA

mRNA sequence

ATGTCGATTGGAAAGTTGGACATGGCCGAGGAATGTTTGAAGTATGCTGTAGATTATAGTGGTTTGTTATTGTTGTACTCTTCCCTAGGAGACGCTCAAGGCATATCACAACTTGCAACCCTTGCCAAGGAGCAAGGAAAGAACAACGTTGCATTCCTTTGTTTATTTGTGTTGGGTAAATTGGAAGACTGCCTTCAGTTGTTAGTAGAAAGTAATCGGATTCCAGAAGCTGCTTTGATGGTTCGATCTTATCTTCCAAGCAAGGTATCAGAGATAGTTGCAATTTGGAGGAAAGACCTGAGTAAGGAAGACTTGAATGAACAAGCTACAATATTATCTTGGTAA

Coding sequence (CDS)

ATGTCGATTGGAAAGTTGGACATGGCCGAGGAATGTTTGAAGTATGCTGTAGATTATAGTGGTTTGTTATTGTTGTACTCTTCCCTAGGAGACGCTCAAGGCATATCACAACTTGCAACCCTTGCCAAGGAGCAAGGAAAGAACAACGTTGCATTCCTTTGTTTATTTGTGTTGGGTAAATTGGAAGACTGCCTTCAGTTGTTAGTAGAAAGTAATCGGATTCCAGAAGCTGCTTTGATGGTTCGATCTTATCTTCCAAGCAAGGTATCAGAGATAGTTGCAATTTGGAGGAAAGACCTGAGTAAGGAAGACTTGAATGAACAAGCTACAATATTATCTTGGTAA

Protein sequence

MSIGKLDMAEECLKYAVDYSGLLLLYSSLGDAQGISQLATLAKEQGKNNVAFLCLFVLGKLEDCLQLLVESNRIPEAALMVRSYLPSKVSEIVAIWRKDLSKEDLNEQATILSW

Homology

[Close]

BLAST of Pay0014044 vs. ExPASy Swiss-Prot
Match: Q9C827 (Coatomer subunit beta'-2 OS=Arabidopsis thaliana OX=3702 GN=At1g52360 PE=1 SV=1)

HSP 1 Score: 181.8 bits (460), Expect = 4.4e-45
Identity = 90/102 (88.24%), Postives = 98/102 (96.08%), Query Frame = 0


Query: 1   MSIGKLDMAEECLKYAVDYSGLLLLYSSLGDAQGISQLATLAKEQGKNNVAFLCLFVLGK 60
           MS GKL MAEEC+KYA+D SGLLLLYSSLGDA+G+++LATLAKEQGKNNVAFLCLF+LGK
Sbjct: 679 MSSGKLQMAEECMKYAMDLSGLLLLYSSLGDAEGVTKLATLAKEQGKNNVAFLCLFMLGK 738

Query: 61  LEDCLQLLVESNRIPEAALMVRSYLPSKVSEIVAIWRKDLSK 103
           LEDCLQLLVESNRIPEAALM RSYLPSKVSEIVA+WRKDLSK
Sbjct: 739 LEDCLQLLVESNRIPEAALMARSYLPSKVSEIVALWRKDLSK 780

[Close]

BLAST of Pay0014044 vs. ExPASy Swiss-Prot
Match: Q8L828 (Coatomer subunit beta'-3 OS=Arabidopsis thaliana OX=3702 GN=At3g15980 PE=2 SV=1)

HSP 1 Score: 175.3 bits (443), Expect = 4.1e-43
Identity = 86/102 (84.31%), Postives = 96/102 (94.12%), Query Frame = 0


Query: 1   MSIGKLDMAEECLKYAVDYSGLLLLYSSLGDAQGISQLATLAKEQGKNNVAFLCLFVLGK 60
           MS GKL +AE+C+KYA+D SGLLLLYSSLGDA+G+S+LA LAKEQGKNNVAFLCLF LG+
Sbjct: 679 MSSGKLQLAEDCMKYAMDLSGLLLLYSSLGDAEGVSKLACLAKEQGKNNVAFLCLFTLGR 738

Query: 61  LEDCLQLLVESNRIPEAALMVRSYLPSKVSEIVAIWRKDLSK 103
           LEDCLQLLVESNRIPEAALM RSYLPSKVSEIVA+WR+DLSK
Sbjct: 739 LEDCLQLLVESNRIPEAALMARSYLPSKVSEIVALWREDLSK 780

[Close]

BLAST of Pay0014044 vs. ExPASy Swiss-Prot
Match: Q9CAA0 (Coatomer subunit beta'-1 OS=Arabidopsis thaliana OX=3702 GN=At1g79990 PE=2 SV=2)

HSP 1 Score: 169.1 bits (427), Expect = 2.9e-41
Identity = 83/102 (81.37%), Postives = 94/102 (92.16%), Query Frame = 0


Query: 1   MSIGKLDMAEECLKYAVDYSGLLLLYSSLGDAQGISQLATLAKEQGKNNVAFLCLFVLGK 60
           MS GKLDMAEEC+++A+D SGLLLLYSSLGDA G+ +LA LAKEQGKNNVAFLCLF+LG+
Sbjct: 678 MSSGKLDMAEECMRHAMDLSGLLLLYSSLGDADGMMKLAALAKEQGKNNVAFLCLFMLGQ 737

Query: 61  LEDCLQLLVESNRIPEAALMVRSYLPSKVSEIVAIWRKDLSK 103
           +EDCL LLVESNRIPEAALM RSYLPSKVSEIVA+WR DL+K
Sbjct: 738 VEDCLHLLVESNRIPEAALMARSYLPSKVSEIVALWRNDLTK 779

[Close]

BLAST of Pay0014044 vs. ExPASy Swiss-Prot
Match: Q5VQ78 (Coatomer subunit beta'-1 OS=Oryza sativa subsp. japonica OX=39947 GN=Os06g0143900 PE=2 SV=1)

HSP 1 Score: 169.1 bits (427), Expect = 2.9e-41
Identity = 85/102 (83.33%), Postives = 92/102 (90.20%), Query Frame = 0


Query: 1   MSIGKLDMAEECLKYAVDYSGLLLLYSSLGDAQGISQLATLAKEQGKNNVAFLCLFVLGK 60
           MS GKLDMAEECL  A D SGLLLLYSSLGDA+GI +LA+ AKE GKNNVAFLCLF+LGK
Sbjct: 679 MSTGKLDMAEECLVQAKDLSGLLLLYSSLGDAEGIEKLASQAKEHGKNNVAFLCLFMLGK 738

Query: 61  LEDCLQLLVESNRIPEAALMVRSYLPSKVSEIVAIWRKDLSK 103
           LEDC+QLL++SNRIPEAALM RSYLPSKVSEIVAIWR DLSK
Sbjct: 739 LEDCIQLLIDSNRIPEAALMARSYLPSKVSEIVAIWRNDLSK 780

[Close]

BLAST of Pay0014044 vs. ExPASy Swiss-Prot
Match: Q6H8D5 (Coatomer subunit beta'-2 OS=Oryza sativa subsp. japonica OX=39947 GN=Os02g0209100 PE=2 SV=1)

HSP 1 Score: 166.0 bits (419), Expect = 2.5e-40
Identity = 80/102 (78.43%), Postives = 93/102 (91.18%), Query Frame = 0


Query: 1   MSIGKLDMAEECLKYAVDYSGLLLLYSSLGDAQGISQLATLAKEQGKNNVAFLCLFVLGK 60
           MS GKLDMAEECL +A+D SGLLLLYSSLGDA+G+++L ++AKEQGKNNVAFLC F+LGK
Sbjct: 679 MSTGKLDMAEECLLHAMDLSGLLLLYSSLGDAEGLTKLTSMAKEQGKNNVAFLCFFMLGK 738

Query: 61  LEDCLQLLVESNRIPEAALMVRSYLPSKVSEIVAIWRKDLSK 103
           LE+CLQLL+ESNRIPEAALM RSYLPSKV EIV +W+KDL K
Sbjct: 739 LEECLQLLIESNRIPEAALMSRSYLPSKVPEIVTLWKKDLQK 780

[Close]

BLAST of Pay0014044 vs. ExPASy TrEMBL
Match: A0A1S4DVC7 (coatomer subunit beta'-2-like OS=Cucumis melo OX=3656 GN=LOC103488562 PE=4 SV=1)

HSP 1 Score: 223.8 bits (569), Expect = 3.7e-55
Identity = 114/114 (100.00%), Postives = 114/114 (100.00%), Query Frame = 0


Query: 1   MSIGKLDMAEECLKYAVDYSGLLLLYSSLGDAQGISQLATLAKEQGKNNVAFLCLFVLGK 60
           MSIGKLDMAEECLKYAVDYSGLLLLYSSLGDAQGISQLATLAKEQGKNNVAFLCLFVLGK
Sbjct: 1   MSIGKLDMAEECLKYAVDYSGLLLLYSSLGDAQGISQLATLAKEQGKNNVAFLCLFVLGK 60

Query: 61  LEDCLQLLVESNRIPEAALMVRSYLPSKVSEIVAIWRKDLSKEDLNEQATILSW 115
           LEDCLQLLVESNRIPEAALMVRSYLPSKVSEIVAIWRKDLSKEDLNEQATILSW
Sbjct: 61  LEDCLQLLVESNRIPEAALMVRSYLPSKVSEIVAIWRKDLSKEDLNEQATILSW 114

[Close]

BLAST of Pay0014044 vs. ExPASy TrEMBL
Match: A0A5A7UAX5 (Coatomer subunit beta'-2-like isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold404G00140 PE=4 SV=1)

HSP 1 Score: 196.4 bits (498), Expect = 6.3e-47
Identity = 100/102 (98.04%), Postives = 101/102 (99.02%), Query Frame = 0


Query: 1   MSIGKLDMAEECLKYAVDYSGLLLLYSSLGDAQGISQLATLAKEQGKNNVAFLCLFVLGK 60
           MSIGKLDMAEECLKYAVDYSGLLLLYSSLGDAQGISQLATLAKEQGKNNVAFLCLF+LGK
Sbjct: 807 MSIGKLDMAEECLKYAVDYSGLLLLYSSLGDAQGISQLATLAKEQGKNNVAFLCLFMLGK 866

Query: 61  LEDCLQLLVESNRIPEAALMVRSYLPSKVSEIVAIWRKDLSK 103
           LEDCLQLLVESNRIPEAALM RSYLPSKVSEIVAIWRKDLSK
Sbjct: 867 LEDCLQLLVESNRIPEAALMARSYLPSKVSEIVAIWRKDLSK 908

[Close]

BLAST of Pay0014044 vs. ExPASy TrEMBL
Match: A0A0A0L8I6 (Coatomer subunit beta' OS=Cucumis sativus OX=3659 GN=Csa_3G516570 PE=3 SV=1)

HSP 1 Score: 196.4 bits (498), Expect = 6.3e-47
Identity = 100/102 (98.04%), Postives = 101/102 (99.02%), Query Frame = 0


Query: 1   MSIGKLDMAEECLKYAVDYSGLLLLYSSLGDAQGISQLATLAKEQGKNNVAFLCLFVLGK 60
           MSIGKLDMAEECLKYAVDYSGLLLLYSSLGDAQGISQLATLAKEQGKNNVAFLCLF+LGK
Sbjct: 679 MSIGKLDMAEECLKYAVDYSGLLLLYSSLGDAQGISQLATLAKEQGKNNVAFLCLFMLGK 738

Query: 61  LEDCLQLLVESNRIPEAALMVRSYLPSKVSEIVAIWRKDLSK 103
           LEDCLQLLVESNRIPEAALM RSYLPSKVSEIVAIWRKDLSK
Sbjct: 739 LEDCLQLLVESNRIPEAALMARSYLPSKVSEIVAIWRKDLSK 780

[Close]

BLAST of Pay0014044 vs. ExPASy TrEMBL
Match: A0A1S3BIG1 (Coatomer subunit beta' OS=Cucumis melo OX=3656 GN=LOC103489926 PE=3 SV=1)

HSP 1 Score: 196.4 bits (498), Expect = 6.3e-47
Identity = 100/102 (98.04%), Postives = 101/102 (99.02%), Query Frame = 0


Query: 1   MSIGKLDMAEECLKYAVDYSGLLLLYSSLGDAQGISQLATLAKEQGKNNVAFLCLFVLGK 60
           MSIGKLDMAEECLKYAVDYSGLLLLYSSLGDAQGISQLATLAKEQGKNNVAFLCLF+LGK
Sbjct: 679 MSIGKLDMAEECLKYAVDYSGLLLLYSSLGDAQGISQLATLAKEQGKNNVAFLCLFMLGK 738

Query: 61  LEDCLQLLVESNRIPEAALMVRSYLPSKVSEIVAIWRKDLSK 103
           LEDCLQLLVESNRIPEAALM RSYLPSKVSEIVAIWRKDLSK
Sbjct: 739 LEDCLQLLVESNRIPEAALMARSYLPSKVSEIVAIWRKDLSK 780

[Close]

BLAST of Pay0014044 vs. ExPASy TrEMBL
Match: A0A1S3BGZ7 (Coatomer subunit beta' OS=Cucumis melo OX=3656 GN=LOC103489926 PE=3 SV=1)

HSP 1 Score: 196.4 bits (498), Expect = 6.3e-47
Identity = 100/102 (98.04%), Postives = 101/102 (99.02%), Query Frame = 0


Query: 1   MSIGKLDMAEECLKYAVDYSGLLLLYSSLGDAQGISQLATLAKEQGKNNVAFLCLFVLGK 60
           MSIGKLDMAEECLKYAVDYSGLLLLYSSLGDAQGISQLATLAKEQGKNNVAFLCLF+LGK
Sbjct: 679 MSIGKLDMAEECLKYAVDYSGLLLLYSSLGDAQGISQLATLAKEQGKNNVAFLCLFMLGK 738

Query: 61  LEDCLQLLVESNRIPEAALMVRSYLPSKVSEIVAIWRKDLSK 103
           LEDCLQLLVESNRIPEAALM RSYLPSKVSEIVAIWRKDLSK
Sbjct: 739 LEDCLQLLVESNRIPEAALMARSYLPSKVSEIVAIWRKDLSK 780

[Close]

BLAST of Pay0014044 vs. NCBI nr
Match: XP_016899939.1 (PREDICTED: coatomer subunit beta'-2-like [Cucumis melo])

HSP 1 Score: 223.8 bits (569), Expect = 7.6e-55
Identity = 114/114 (100.00%), Postives = 114/114 (100.00%), Query Frame = 0


Query: 1   MSIGKLDMAEECLKYAVDYSGLLLLYSSLGDAQGISQLATLAKEQGKNNVAFLCLFVLGK 60
           MSIGKLDMAEECLKYAVDYSGLLLLYSSLGDAQGISQLATLAKEQGKNNVAFLCLFVLGK
Sbjct: 1   MSIGKLDMAEECLKYAVDYSGLLLLYSSLGDAQGISQLATLAKEQGKNNVAFLCLFVLGK 60

Query: 61  LEDCLQLLVESNRIPEAALMVRSYLPSKVSEIVAIWRKDLSKEDLNEQATILSW 115
           LEDCLQLLVESNRIPEAALMVRSYLPSKVSEIVAIWRKDLSKEDLNEQATILSW
Sbjct: 61  LEDCLQLLVESNRIPEAALMVRSYLPSKVSEIVAIWRKDLSKEDLNEQATILSW 114

[Close]

BLAST of Pay0014044 vs. NCBI nr
Match: XP_008447491.1 (PREDICTED: coatomer subunit beta'-2-like isoform X2 [Cucumis melo])

HSP 1 Score: 196.4 bits (498), Expect = 1.3e-46
Identity = 100/102 (98.04%), Postives = 101/102 (99.02%), Query Frame = 0


Query: 1   MSIGKLDMAEECLKYAVDYSGLLLLYSSLGDAQGISQLATLAKEQGKNNVAFLCLFVLGK 60
           MSIGKLDMAEECLKYAVDYSGLLLLYSSLGDAQGISQLATLAKEQGKNNVAFLCLF+LGK
Sbjct: 679 MSIGKLDMAEECLKYAVDYSGLLLLYSSLGDAQGISQLATLAKEQGKNNVAFLCLFMLGK 738

Query: 61  LEDCLQLLVESNRIPEAALMVRSYLPSKVSEIVAIWRKDLSK 103
           LEDCLQLLVESNRIPEAALM RSYLPSKVSEIVAIWRKDLSK
Sbjct: 739 LEDCLQLLVESNRIPEAALMARSYLPSKVSEIVAIWRKDLSK 780

[Close]

BLAST of Pay0014044 vs. NCBI nr
Match: XP_004149846.1 (coatomer subunit beta'-2 isoform X1 [Cucumis sativus] >XP_031739285.1 coatomer subunit beta'-2 isoform X1 [Cucumis sativus])

HSP 1 Score: 196.4 bits (498), Expect = 1.3e-46
Identity = 100/102 (98.04%), Postives = 101/102 (99.02%), Query Frame = 0


Query: 1   MSIGKLDMAEECLKYAVDYSGLLLLYSSLGDAQGISQLATLAKEQGKNNVAFLCLFVLGK 60
           MSIGKLDMAEECLKYAVDYSGLLLLYSSLGDAQGISQLATLAKEQGKNNVAFLCLF+LGK
Sbjct: 679 MSIGKLDMAEECLKYAVDYSGLLLLYSSLGDAQGISQLATLAKEQGKNNVAFLCLFMLGK 738

Query: 61  LEDCLQLLVESNRIPEAALMVRSYLPSKVSEIVAIWRKDLSK 103
           LEDCLQLLVESNRIPEAALM RSYLPSKVSEIVAIWRKDLSK
Sbjct: 739 LEDCLQLLVESNRIPEAALMARSYLPSKVSEIVAIWRKDLSK 780

[Close]

BLAST of Pay0014044 vs. NCBI nr
Match: XP_008447490.1 (PREDICTED: coatomer subunit beta'-2-like isoform X1 [Cucumis melo])

HSP 1 Score: 196.4 bits (498), Expect = 1.3e-46
Identity = 100/102 (98.04%), Postives = 101/102 (99.02%), Query Frame = 0


Query: 1   MSIGKLDMAEECLKYAVDYSGLLLLYSSLGDAQGISQLATLAKEQGKNNVAFLCLFVLGK 60
           MSIGKLDMAEECLKYAVDYSGLLLLYSSLGDAQGISQLATLAKEQGKNNVAFLCLF+LGK
Sbjct: 679 MSIGKLDMAEECLKYAVDYSGLLLLYSSLGDAQGISQLATLAKEQGKNNVAFLCLFMLGK 738

Query: 61  LEDCLQLLVESNRIPEAALMVRSYLPSKVSEIVAIWRKDLSK 103
           LEDCLQLLVESNRIPEAALM RSYLPSKVSEIVAIWRKDLSK
Sbjct: 739 LEDCLQLLVESNRIPEAALMARSYLPSKVSEIVAIWRKDLSK 780

[Close]

BLAST of Pay0014044 vs. NCBI nr
Match: XP_011651524.1 (coatomer subunit beta'-2 isoform X2 [Cucumis sativus] >KAE8650745.1 hypothetical protein Csa_017623 [Cucumis sativus])

HSP 1 Score: 196.4 bits (498), Expect = 1.3e-46
Identity = 100/102 (98.04%), Postives = 101/102 (99.02%), Query Frame = 0


Query: 1   MSIGKLDMAEECLKYAVDYSGLLLLYSSLGDAQGISQLATLAKEQGKNNVAFLCLFVLGK 60
           MSIGKLDMAEECLKYAVDYSGLLLLYSSLGDAQGISQLATLAKEQGKNNVAFLCLF+LGK
Sbjct: 679 MSIGKLDMAEECLKYAVDYSGLLLLYSSLGDAQGISQLATLAKEQGKNNVAFLCLFMLGK 738

Query: 61  LEDCLQLLVESNRIPEAALMVRSYLPSKVSEIVAIWRKDLSK 103
           LEDCLQLLVESNRIPEAALM RSYLPSKVSEIVAIWRKDLSK
Sbjct: 739 LEDCLQLLVESNRIPEAALMARSYLPSKVSEIVAIWRKDLSK 780

[Close]

BLAST of Pay0014044 vs. TAIR 10
Match: AT1G52360.1 (Coatomer, beta' subunit )

HSP 1 Score: 181.8 bits (460), Expect = 3.1e-46
Identity = 90/102 (88.24%), Postives = 98/102 (96.08%), Query Frame = 0


Query: 1   MSIGKLDMAEECLKYAVDYSGLLLLYSSLGDAQGISQLATLAKEQGKNNVAFLCLFVLGK 60
           MS GKL MAEEC+KYA+D SGLLLLYSSLGDA+G+++LATLAKEQGKNNVAFLCLF+LGK
Sbjct: 679 MSSGKLQMAEECMKYAMDLSGLLLLYSSLGDAEGVTKLATLAKEQGKNNVAFLCLFMLGK 738

Query: 61  LEDCLQLLVESNRIPEAALMVRSYLPSKVSEIVAIWRKDLSK 103
           LEDCLQLLVESNRIPEAALM RSYLPSKVSEIVA+WRKDLSK
Sbjct: 739 LEDCLQLLVESNRIPEAALMARSYLPSKVSEIVALWRKDLSK 780

[Close]

BLAST of Pay0014044 vs. TAIR 10
Match: AT1G52360.2 (Coatomer, beta' subunit )

HSP 1 Score: 181.8 bits (460), Expect = 3.1e-46
Identity = 90/102 (88.24%), Postives = 98/102 (96.08%), Query Frame = 0


Query: 1   MSIGKLDMAEECLKYAVDYSGLLLLYSSLGDAQGISQLATLAKEQGKNNVAFLCLFVLGK 60
           MS GKL MAEEC+KYA+D SGLLLLYSSLGDA+G+++LATLAKEQGKNNVAFLCLF+LGK
Sbjct: 723 MSSGKLQMAEECMKYAMDLSGLLLLYSSLGDAEGVTKLATLAKEQGKNNVAFLCLFMLGK 782

Query: 61  LEDCLQLLVESNRIPEAALMVRSYLPSKVSEIVAIWRKDLSK 103
           LEDCLQLLVESNRIPEAALM RSYLPSKVSEIVA+WRKDLSK
Sbjct: 783 LEDCLQLLVESNRIPEAALMARSYLPSKVSEIVALWRKDLSK 824

[Close]

BLAST of Pay0014044 vs. TAIR 10
Match: AT3G15980.1 (Coatomer, beta' subunit )

HSP 1 Score: 175.3 bits (443), Expect = 2.9e-44
Identity = 86/102 (84.31%), Postives = 96/102 (94.12%), Query Frame = 0


Query: 1   MSIGKLDMAEECLKYAVDYSGLLLLYSSLGDAQGISQLATLAKEQGKNNVAFLCLFVLGK 60
           MS GKL +AE+C+KYA+D SGLLLLYSSLGDA+G+S+LA LAKEQGKNNVAFLCLF LG+
Sbjct: 679 MSSGKLQLAEDCMKYAMDLSGLLLLYSSLGDAEGVSKLACLAKEQGKNNVAFLCLFTLGR 738

Query: 61  LEDCLQLLVESNRIPEAALMVRSYLPSKVSEIVAIWRKDLSK 103
           LEDCLQLLVESNRIPEAALM RSYLPSKVSEIVA+WR+DLSK
Sbjct: 739 LEDCLQLLVESNRIPEAALMARSYLPSKVSEIVALWREDLSK 780

[Close]

BLAST of Pay0014044 vs. TAIR 10
Match: AT3G15980.2 (Coatomer, beta' subunit )

HSP 1 Score: 175.3 bits (443), Expect = 2.9e-44
Identity = 86/102 (84.31%), Postives = 96/102 (94.12%), Query Frame = 0


Query: 1   MSIGKLDMAEECLKYAVDYSGLLLLYSSLGDAQGISQLATLAKEQGKNNVAFLCLFVLGK 60
           MS GKL +AE+C+KYA+D SGLLLLYSSLGDA+G+S+LA LAKEQGKNNVAFLCLF LG+
Sbjct: 679 MSSGKLQLAEDCMKYAMDLSGLLLLYSSLGDAEGVSKLACLAKEQGKNNVAFLCLFTLGR 738

Query: 61  LEDCLQLLVESNRIPEAALMVRSYLPSKVSEIVAIWRKDLSK 103
           LEDCLQLLVESNRIPEAALM RSYLPSKVSEIVA+WR+DLSK
Sbjct: 739 LEDCLQLLVESNRIPEAALMARSYLPSKVSEIVALWREDLSK 780

[Close]

BLAST of Pay0014044 vs. TAIR 10
Match: AT3G15980.3 (Coatomer, beta' subunit )

HSP 1 Score: 175.3 bits (443), Expect = 2.9e-44
Identity = 86/102 (84.31%), Postives = 96/102 (94.12%), Query Frame = 0


Query: 1   MSIGKLDMAEECLKYAVDYSGLLLLYSSLGDAQGISQLATLAKEQGKNNVAFLCLFVLGK 60
           MS GKL +AE+C+KYA+D SGLLLLYSSLGDA+G+S+LA LAKEQGKNNVAFLCLF LG+
Sbjct: 679 MSSGKLQLAEDCMKYAMDLSGLLLLYSSLGDAEGVSKLACLAKEQGKNNVAFLCLFTLGR 738

Query: 61  LEDCLQLLVESNRIPEAALMVRSYLPSKVSEIVAIWRKDLSK 103
           LEDCLQLLVESNRIPEAALM RSYLPSKVSEIVA+WR+DLSK
Sbjct: 739 LEDCLQLLVESNRIPEAALMARSYLPSKVSEIVALWREDLSK 780

The following BLAST results are available for this feature:

BLAST of Pay0014044 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9C827	4.4e-45	88.24	Coatomer subunit beta'-2 OS=Arabidopsis thaliana OX=3702 GN=At1g52360 PE=1 SV=1	[more]
Q8L828	4.1e-43	84.31	Coatomer subunit beta'-3 OS=Arabidopsis thaliana OX=3702 GN=At3g15980 PE=2 SV=1	[more]
Q9CAA0	2.9e-41	81.37	Coatomer subunit beta'-1 OS=Arabidopsis thaliana OX=3702 GN=At1g79990 PE=2 SV=2	[more]
Q5VQ78	2.9e-41	83.33	Coatomer subunit beta'-1 OS=Oryza sativa subsp. japonica OX=39947 GN=Os06g014390...	[more]
Q6H8D5	2.5e-40	78.43	Coatomer subunit beta'-2 OS=Oryza sativa subsp. japonica OX=39947 GN=Os02g020910...	[more]

BLAST of Pay0014044 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S4DVC7	3.7e-55	100.00	coatomer subunit beta'-2-like OS=Cucumis melo OX=3656 GN=LOC103488562 PE=4 SV=1	[more]
A0A5A7UAX5	6.3e-47	98.04	Coatomer subunit beta'-2-like isoform X1 OS=Cucumis melo var. makuwa OX=1194695 ...	[more]
A0A0A0L8I6	6.3e-47	98.04	Coatomer subunit beta' OS=Cucumis sativus OX=3659 GN=Csa_3G516570 PE=3 SV=1	[more]
A0A1S3BIG1	6.3e-47	98.04	Coatomer subunit beta' OS=Cucumis melo OX=3656 GN=LOC103489926 PE=3 SV=1	[more]
A0A1S3BGZ7	6.3e-47	98.04	Coatomer subunit beta' OS=Cucumis melo OX=3656 GN=LOC103489926 PE=3 SV=1	[more]

BLAST of Pay0014044 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_016899939.1	7.6e-55	100.00	PREDICTED: coatomer subunit beta'-2-like [Cucumis melo]	[more]
XP_008447491.1	1.3e-46	98.04	PREDICTED: coatomer subunit beta'-2-like isoform X2 [Cucumis melo]	[more]
XP_004149846.1	1.3e-46	98.04	coatomer subunit beta'-2 isoform X1 [Cucumis sativus] >XP_031739285.1 coatomer s...	[more]
XP_008447490.1	1.3e-46	98.04	PREDICTED: coatomer subunit beta'-2-like isoform X1 [Cucumis melo]	[more]
XP_011651524.1	1.3e-46	98.04	coatomer subunit beta'-2 isoform X2 [Cucumis sativus] >KAE8650745.1 hypothetical...	[more]

BLAST of Pay0014044 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G52360.1	3.1e-46	88.24	Coatomer, beta' subunit	[more]
AT1G52360.2	3.1e-46	88.24	Coatomer, beta' subunit	[more]
AT3G15980.1	2.9e-44	84.31	Coatomer, beta' subunit	[more]
AT3G15980.2	2.9e-44	84.31	Coatomer, beta' subunit	[more]
AT3G15980.3	2.9e-44	84.31	Coatomer, beta' subunit	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (Payzawat) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	1.25.40.470		coord: 1..113 e-value: 4.5E-37 score: 129.9
None	No IPR available	PANTHER	PTHR19876	COATOMER	coord: 1..104
None	No IPR available	PANTHER	PTHR19876:SF45	COATOMER SUBUNIT BETA'	coord: 1..104
IPR006692	Coatomer, WD associated region	PFAM	PF04053	Coatomer_WDAD	coord: 2..85 e-value: 9.1E-23 score: 81.0

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Pay0014044.1	Pay0014044.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006888	endoplasmic reticulum to Golgi vesicle-mediated transport
biological_process	GO:0006886	intracellular protein transport
biological_process	GO:0006891	intra-Golgi vesicle-mediated transport
biological_process	GO:0006890	retrograde vesicle-mediated transport, Golgi to endoplasmic reticulum
biological_process	GO:0016192	vesicle-mediated transport
cellular_component	GO:0030126	COPI vesicle coat
cellular_component	GO:0000139	Golgi membrane
cellular_component	GO:0030117	membrane coat
molecular_function	GO:0005198	structural molecule activity