Pay0013685 (gene) Melon (Payzawat) v1

Overview


Name	Pay0013685
Type	gene
Organism	Cucumis melo L. var. inodorus cv. Payzawat (Melon (Payzawat) v1)
Description	Ty3-gypsy retrotransposon protein
Location	chr07: 21836407 .. 21837521 (+)
RNA-Seq Expression	Pay0013685
Synteny	Pay0013685

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGACATCTCAAGGCAACACTTCCAAAGCTCTCAGTGACATCGGCAAGCGGCTAAACACTCGCAGCCACTCAAGGGAGATTCAGTCATCTGAAGATATGCCTCCTTTTGAAGTTGCAAAGAATATTTGGGACCAAATCTCTAAGCCACCAAAAGGGGGAATTGTAATCAAAGAGAATCTTGCGATTGACGAACACAACTCGTTGTCTGATCGCTCAAATGAGGAGGCGCCACAGCCAAATATAATGTCAGTTATGGTAACTGATGTGGATACAAGCGAAGACAGAATGGCAGAGCTCGAAAAAAAGGTTAATATGCTAATGAAAGCGGTTGAAGAAAGGGATTTTGAGATCGCATTGTTGAAAAATCACATTGAAAGTCGTGACGCTGCTGAATCAAGTCACACACACATTATAAAAATGTTAACAAAGGGAAAGCAGTTATGCAAGAAAGTCAACCACAAAATTCTACCTCGATCACATCATTGTCTGTCCAGCAGCTGCAAGAGATGATTGCAAACTCTATCAAAACTCAATACGGTGGACTGCTCAAAACGTTCTCTTTATCTTCCAAGCCATATACGAAAAGGATTGACAATATGAGAATGCCACATGGATACCAGCCACTCAAGTTTCAACAGTTCGATGGAAAGGGCAACCCAAAACAACATATTGCTCATTTCATCGAAACTTGTGAAACTGCTGGTACACGGGGAGATTTGTTAGTCAAGCAGTTTGTTCGAACTCTCAAAGGAAACGCCTTCGATTGGTACACCGACTTGGAGCCTGAATCAATTGATAGTTGGGAGCAGCTTGAAAGGGACTTTCTCAACCGTTTCTACAGCACCAGACGTATTGTTAGCATGATAGAGTTAACTGCAACCAAGCAGCGAAAAGGTGAGCCGGTCATTGACTATATTAATCGCTGGAGAGCATTAAGCCTTGACTGTAAAGATAGATTAACTGAATTATCAGCAGTTGAAGTGTGCACTCAAGGAATGCATTGGGGACTCCTGTACATCTTGCAGGGAATAAAACCCTGTACCTTTGAAGAGTTAGCAACTAGAGCTCATTATATGGAGCTAAGTATTGCTATAGAGGAAACAATGATCTTTTAG

mRNA sequence

ATGACATCTCAAGGCAACACTTCCAAAGCTCTCAGTGACATCGGCAAGCGGCTAAACACTCGCAGCCACTCAAGGGAGATTCAGTCATCTGAAGATATGCCTCCTTTTGAAGTTGCAAAGAATATTTGGGACCAAATCTCTAAGCCACCAAAAGGGGGAATTGTAATCAAAGAGAATCTTGCGATTGACGAACACAACTCGTTGTCTGATCGCTCAAATGAGGAGGCGCCACAGCCAAATATAATGTCAGTTATGGTAACTGATGTGGATACAAGCGAAGACAGAATGGCAGAGCTCGAAAAAAAGTCACACACACATTATAAAAATGTTAACAAAGGGAAAGCAGTTATGCAAGAAAGTCAACCACAAAATTCTACCTCGATCACATCATTGTCTGTCCAGCAGCTGCAAGAGATGATTGCAAACTCTATCAAAACTCAATACGGTGGACTGCTCAAAACGTTCTCTTTATCTTCCAAGCCATATACGAAAAGGATTGACAATATGAGAATGCCACATGGATACCAGCCACTCAAGTTTCAACAGTTCGATGGAAAGGGCAACCCAAAACAACATATTGCTCATTTCATCGAAACTTGTGAAACTGCTGGTACACGGGGAGATTTGTTAGTCAAGCAGTTTGTTCGAACTCTCAAAGGAAACGCCTTCGATTGGTACACCGACTTGGAGCCTGAATCAATTGATAGTTGGGAGCAGCTTGAAAGGGACTTTCTCAACCGTTTCTACAGCACCAGACGTATTGTTAGCATGATAGAGTTAACTGCAACCAAGCAGCGAAAAGGTGAGCCGGTCATTGACTATATTAATCGCTGGAGAGCATTAAGCCTTGACTGTAAAGATAGATTAACTGAATTATCAGCAGTTGAAGTGTGCACTCAAGGAATGCATTGGGGACTCCTGTACATCTTGCAGGGAATAAAACCCTGTACCTTTGAAGAGTTAGCAACTAGAGCTCATTATATGGAGCTAAGTATTGCTATAGAGGAAACAATGATCTTTTAG

Coding sequence (CDS)

ATGACATCTCAAGGCAACACTTCCAAAGCTCTCAGTGACATCGGCAAGCGGCTAAACACTCGCAGCCACTCAAGGGAGATTCAGTCATCTGAAGATATGCCTCCTTTTGAAGTTGCAAAGAATATTTGGGACCAAATCTCTAAGCCACCAAAAGGGGGAATTGTAATCAAAGAGAATCTTGCGATTGACGAACACAACTCGTTGTCTGATCGCTCAAATGAGGAGGCGCCACAGCCAAATATAATGTCAGTTATGGTAACTGATGTGGATACAAGCGAAGACAGAATGGCAGAGCTCGAAAAAAAGTCACACACACATTATAAAAATGTTAACAAAGGGAAAGCAGTTATGCAAGAAAGTCAACCACAAAATTCTACCTCGATCACATCATTGTCTGTCCAGCAGCTGCAAGAGATGATTGCAAACTCTATCAAAACTCAATACGGTGGACTGCTCAAAACGTTCTCTTTATCTTCCAAGCCATATACGAAAAGGATTGACAATATGAGAATGCCACATGGATACCAGCCACTCAAGTTTCAACAGTTCGATGGAAAGGGCAACCCAAAACAACATATTGCTCATTTCATCGAAACTTGTGAAACTGCTGGTACACGGGGAGATTTGTTAGTCAAGCAGTTTGTTCGAACTCTCAAAGGAAACGCCTTCGATTGGTACACCGACTTGGAGCCTGAATCAATTGATAGTTGGGAGCAGCTTGAAAGGGACTTTCTCAACCGTTTCTACAGCACCAGACGTATTGTTAGCATGATAGAGTTAACTGCAACCAAGCAGCGAAAAGGTGAGCCGGTCATTGACTATATTAATCGCTGGAGAGCATTAAGCCTTGACTGTAAAGATAGATTAACTGAATTATCAGCAGTTGAAGTGTGCACTCAAGGAATGCATTGGGGACTCCTGTACATCTTGCAGGGAATAAAACCCTGTACCTTTGAAGAGTTAGCAACTAGAGCTCATTATATGGAGCTAAGTATTGCTATAGAGGAAACAATGATCTTTTAG

Protein sequence

MTSQGNTSKALSDIGKRLNTRSHSREIQSSEDMPPFEVAKNIWDQISKPPKGGIVIKENLAIDEHNSLSDRSNEEAPQPNIMSVMVTDVDTSEDRMAELEKKSHTHYKNVNKGKAVMQESQPQNSTSITSLSVQQLQEMIANSIKTQYGGLLKTFSLSSKPYTKRIDNMRMPHGYQPLKFQQFDGKGNPKQHIAHFIETCETAGTRGDLLVKQFVRTLKGNAFDWYTDLEPESIDSWEQLERDFLNRFYSTRRIVSMIELTATKQRKGEPVIDYINRWRALSLDCKDRLTELSAVEVCTQGMHWGLLYILQGIKPCTFEELATRAHYMELSIAIEETMIF

Homology

[Close]

BLAST of Pay0013685 vs. ExPASy TrEMBL
Match: A0A5A7TZU9 (Ribonuclease H OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold498G00940 PE=4 SV=1)

HSP 1 Score: 605.5 bits (1560), Expect = 1.3e-169
Identity = 312/364 (85.71%), Postives = 320/364 (87.91%), Query Frame = 0


Query: 1   MTSQGNTSKALSDIGKRLNTRSHSREIQSSEDMPPFEVAKNIWDQISKPPKGGIVIKENL 60
           MTSQGNTSKALSDIGKR NTRS SREIQSSEDMPPF+VAKNIW+QISKPPKGGIVIKEN 
Sbjct: 1   MTSQGNTSKALSDIGKRPNTRSRSREIQSSEDMPPFDVAKNIWEQISKPPKGGIVIKENP 60

Query: 61  AIDEHNSLSDRSNEEAPQPNIMSVMVTDVDTSEDRMAELEKK------------------ 120
           A+DEHNSLS+RSNEE PQPNIMSVMVTDVDTSEDRMAELEKK                  
Sbjct: 61  AMDEHNSLSERSNEEVPQPNIMSVMVTDVDTSEDRMAELEKKVNMLMKAVEERDFEIALL 120

Query: 121 ------------SHTH-YKNVNKGKAVMQESQPQNSTSITSLSVQQLQEMIANSIKTQYG 180
                       SHTH  KN NKGKA+MQESQPQNSTSI SLSVQQLQEMIANSIKTQYG
Sbjct: 121 KNHIESRDAAESSHTHTIKNANKGKAIMQESQPQNSTSIASLSVQQLQEMIANSIKTQYG 180

Query: 181 GLLKTFSLSSKPYTKRIDNMRMPHGYQPLKFQQFDGKGNPKQHIAHFIETCETAGTRGDL 240
           G  +TFSL SKPYTKRIDNMRMPHGYQP KFQQFDGKGNPKQH+AHFIETCETAGTRGDL
Sbjct: 181 GPAQTFSLYSKPYTKRIDNMRMPHGYQPPKFQQFDGKGNPKQHVAHFIETCETAGTRGDL 240

Query: 241 LVKQFVRTLKGNAFDWYTDLEPESIDSWEQLERDFLNRFYSTRRIVSMIELTATKQRKGE 300
           LVKQFVRTLKGNAFDWYTDLEPESIDSWEQLERDFLNRFYSTRRIVSMIELTATKQRKGE
Sbjct: 241 LVKQFVRTLKGNAFDWYTDLEPESIDSWEQLERDFLNRFYSTRRIVSMIELTATKQRKGE 300

Query: 301 PVIDYINRWRALSLDCKDRLTELSAVEVCTQGMHWGLLYILQGIKPCTFEELATRAHYME 334
           PVIDYINRWRALSLDCKDRLTELSAVE+CTQGMHWGLLYILQGIKP TFEELATRAH ME
Sbjct: 301 PVIDYINRWRALSLDCKDRLTELSAVEMCTQGMHWGLLYILQGIKPRTFEELATRAHDME 360

[Close]

BLAST of Pay0013685 vs. ExPASy TrEMBL
Match: A0A5A7UUI7 (Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold518G00790 PE=4 SV=1)

HSP 1 Score: 578.2 bits (1489), Expect = 2.3e-161
Identity = 299/364 (82.14%), Postives = 315/364 (86.54%), Query Frame = 0


Query: 1   MTSQGNTSKALSDIGKRLNTRSHSREIQSSEDMPPFEVAKNIWDQISKPPKGGIVIKENL 60
           MTSQGNTSKALSDIGKR NTRS SREIQSSEDMPPFEVAKNIW+QISKPPKGGIVIKEN 
Sbjct: 1   MTSQGNTSKALSDIGKRPNTRSRSREIQSSEDMPPFEVAKNIWEQISKPPKGGIVIKENT 60

Query: 61  AIDEHNSLSDRSNEEAPQPNIMSVMVTDVDTSEDRMAELEKK------------------ 120
           A+DEHNSLS+ SNEE PQPNIMSVMVT+VDTSE+RMAELEKK                  
Sbjct: 61  AVDEHNSLSECSNEEVPQPNIMSVMVTNVDTSENRMAELEKKVNMLMKVVEERDYEIAFL 120

Query: 121 ------------SHTH-YKNVNKGKAVMQESQPQNSTSITSLSVQQLQEMIANSIKTQYG 180
                       SH H  KN +KGKAVMQESQPQNSTSI SLSVQQLQEMIA+SIKTQYG
Sbjct: 121 KNHIESRDAAESSHKHTVKNTDKGKAVMQESQPQNSTSIASLSVQQLQEMIASSIKTQYG 180

Query: 181 GLLKTFSLSSKPYTKRIDNMRMPHGYQPLKFQQFDGKGNPKQHIAHFIETCETAGTRGDL 240
           G  +TFSL SKPYTKRIDN+RMP+GYQP KFQQFDGKGNPKQH+AHFIETCETAGTRGDL
Sbjct: 181 GPAQTFSLYSKPYTKRIDNLRMPNGYQPPKFQQFDGKGNPKQHVAHFIETCETAGTRGDL 240

Query: 241 LVKQFVRTLKGNAFDWYTDLEPESIDSWEQLERDFLNRFYSTRRIVSMIELTATKQRKGE 300
           LVKQFVRTLKGNAFDWY DLEPESID+WEQLERDFLNRFYSTRRIVSM+ELT T+Q+KGE
Sbjct: 241 LVKQFVRTLKGNAFDWYIDLEPESIDNWEQLERDFLNRFYSTRRIVSMMELTNTRQQKGE 300

Query: 301 PVIDYINRWRALSLDCKDRLTELSAVEVCTQGMHWGLLYILQGIKPCTFEELATRAHYME 334
            VIDYINRWRALSLDCKDRLTELSAVE+CTQGMHWGLLYILQGIKP TFEELATRAH ME
Sbjct: 301 LVIDYINRWRALSLDCKDRLTELSAVEMCTQGMHWGLLYILQGIKPRTFEELATRAHDME 360

[Close]

BLAST of Pay0013685 vs. ExPASy TrEMBL
Match: A0A5A7T777 (Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold277G00260 PE=4 SV=1)

HSP 1 Score: 562.0 bits (1447), Expect = 1.7e-156
Identity = 293/364 (80.49%), Postives = 309/364 (84.89%), Query Frame = 0


Query: 1   MTSQGNTSKALSDIGKRLNTRSHSREIQSSEDMPPFEVAKNIWDQISKPPKGGIVIKENL 60
           MTSQGNTSKALSDIGKR NTRS SREIQSSEDMPPFEVAKNIW+QISKPPKGGIVIKEN 
Sbjct: 1   MTSQGNTSKALSDIGKRPNTRSRSREIQSSEDMPPFEVAKNIWEQISKPPKGGIVIKENH 60

Query: 61  AIDEHNSLSDRSNEEAPQPNIMSVMVTDVDTSEDRMAELEKK------------------ 120
           AIDEH S S  S+EE P PNIMSVMVT+VDTSE+RMAELEKK                  
Sbjct: 61  AIDEHYSSSKPSSEEMPHPNIMSVMVTNVDTSENRMAELEKKVNMLMKVVEERDYEIAFL 120

Query: 121 ------------SHTH-YKNVNKGKAVMQESQPQNSTSITSLSVQQLQEMIANSIKTQYG 180
                       SH H  KN +KGKAVMQESQPQNSTSI SLSVQQLQEMIA+SIKTQYG
Sbjct: 121 KNHIESCDAAESSHKHTVKNTDKGKAVMQESQPQNSTSIASLSVQQLQEMIASSIKTQYG 180

Query: 181 GLLKTFSLSSKPYTKRIDNMRMPHGYQPLKFQQFDGKGNPKQHIAHFIETCETAGTRGDL 240
           G  +TFSL SKPYTKRIDN+RMP+GYQP  FQQFDGKGNPKQH+AHFIETCETAGTRGDL
Sbjct: 181 GPAQTFSLYSKPYTKRIDNLRMPNGYQPPNFQQFDGKGNPKQHVAHFIETCETAGTRGDL 240

Query: 241 LVKQFVRTLKGNAFDWYTDLEPESIDSWEQLERDFLNRFYSTRRIVSMIELTATKQRKGE 300
           LVKQF+RTLKGNAFDWY DLEPESID+WEQLERDFLNRFYSTRRIVSM+ELT T+Q+KGE
Sbjct: 241 LVKQFIRTLKGNAFDWYIDLEPESIDNWEQLERDFLNRFYSTRRIVSMMELTNTRQQKGE 300

Query: 301 PVIDYINRWRALSLDCKDRLTELSAVEVCTQGMHWGLLYILQGIKPCTFEELATRAHYME 334
            VIDYINRWRALSLDCKDRLTELSAVE+CTQGMHWGLLYILQ IKP TFEELATRAH ME
Sbjct: 301 LVIDYINRWRALSLDCKDRLTELSAVEMCTQGMHWGLLYILQEIKPRTFEELATRAHDME 360

[Close]

BLAST of Pay0013685 vs. ExPASy TrEMBL
Match: A0A5D3BX77 (Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold863G00570 PE=4 SV=1)

HSP 1 Score: 562.0 bits (1447), Expect = 1.7e-156
Identity = 294/363 (80.99%), Postives = 310/363 (85.40%), Query Frame = 0


Query: 1   MTSQGNTSKALSDIGKRLNTRSHSREIQSSEDMPPFEVAKNIWDQISKPPKGGIVIKENL 60
           MTSQGNTSKALS IGKR NT S SREIQS EDMPPFEVAKNIW+QISKPPKGGIVIKEN 
Sbjct: 1   MTSQGNTSKALSYIGKRPNTHSCSREIQSFEDMPPFEVAKNIWEQISKPPKGGIVIKENP 60

Query: 61  AIDEHNSLSDRSNEEAPQPNIMSVMVTDVDTSEDRMAELEKK------------------ 120
           A+DEHNSLS+ SNEE PQPNIMSVMVT+VDTSE+RMAELEKK                  
Sbjct: 61  AVDEHNSLSECSNEEVPQPNIMSVMVTNVDTSENRMAELEKKVNMLMKVVEERDYEIAFL 120

Query: 121 ------------SHTH-YKNVNKGKAVMQESQPQNSTSITSLSVQQLQEMIANSIKTQYG 180
                       SH H  KN +KGKAVMQESQPQNSTSI SLSVQQLQEMIA+SIKTQYG
Sbjct: 121 KNHIESRDAAESSHKHTVKNTDKGKAVMQESQPQNSTSIASLSVQQLQEMIASSIKTQYG 180

Query: 181 GLLKTFSLSSKPYTKRIDNMRMPHGYQPLKFQQFDGKGNPKQHIAHFIETCETAGTRGDL 240
           G  +TFSL SKPYTKRIDN+RMP+GYQP KFQQFDGKGNPKQH+AHFIETCETAGTRGDL
Sbjct: 181 GPAQTFSLYSKPYTKRIDNLRMPNGYQPPKFQQFDGKGNPKQHVAHFIETCETAGTRGDL 240

Query: 241 LVKQFVRTLKGNAFDWYTDLEPESIDSWEQLERDFLNRFYSTRRIVSMIELTATKQRKGE 300
           LVKQFVRTLKGNAFD Y DLEPESID+WEQLERDFLNRFYSTRRIVSM+ELT T+Q+KGE
Sbjct: 241 LVKQFVRTLKGNAFDLYMDLEPESIDNWEQLERDFLNRFYSTRRIVSMMELTNTRQQKGE 300

Query: 301 PVIDYINRWRALSLDCKDRLTELSAVEVCTQGMHWGLLYILQGIKPCTFEELATRAHYME 333
            VIDYINRWRALSLDCKDRLTELSAVE+CTQGMHWGLLYILQGIKP TFEELATRAH ME
Sbjct: 301 LVIDYINRWRALSLDCKDRLTELSAVEMCTQGMHWGLLYILQGIKPRTFEELATRAHDME 360

[Close]

BLAST of Pay0013685 vs. ExPASy TrEMBL
Match: A0A5D3CSH0 (Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold2047G00190 PE=4 SV=1)

HSP 1 Score: 560.5 bits (1443), Expect = 5.0e-156
Identity = 293/363 (80.72%), Postives = 308/363 (84.85%), Query Frame = 0


Query: 1   MTSQGNTSKALSDIGKRLNTRSHSREIQSSEDMPPFEVAKNIWDQISKPPKGGIVIKENL 60
           MTSQGNTSKALSDIGKR NTRS SREIQSSEDMPPFEVAKNIW+QISKPPKGGIVIKEN 
Sbjct: 1   MTSQGNTSKALSDIGKRPNTRSRSREIQSSEDMPPFEVAKNIWEQISKPPKGGIVIKENH 60

Query: 61  AIDEHNSLSDRSNEEAPQPNIMSVMVTDVDTSEDRMAELEKK------------------ 120
           AIDEH S S  S+EE P PNIMSVMVT+VDTSE+RMAELEKK                  
Sbjct: 61  AIDEHYSSSKPSSEEMPHPNIMSVMVTNVDTSENRMAELEKKVNMLMKVVEERDYEIAFL 120

Query: 121 ------------SHTH-YKNVNKGKAVMQESQPQNSTSITSLSVQQLQEMIANSIKTQYG 180
                       SH H  KN +KGKAVMQESQPQN TSI SLSVQQLQEMIA+SIKTQYG
Sbjct: 121 KNHIESRDAAESSHKHTVKNTDKGKAVMQESQPQNLTSIASLSVQQLQEMIASSIKTQYG 180

Query: 181 GLLKTFSLSSKPYTKRIDNMRMPHGYQPLKFQQFDGKGNPKQHIAHFIETCETAGTRGDL 240
           G  +TFSL SKPYTKRIDN+RMP+GYQP KFQQFDGKGNPKQH+AHFIETCETAGTRGDL
Sbjct: 181 GPAQTFSLYSKPYTKRIDNLRMPNGYQPPKFQQFDGKGNPKQHVAHFIETCETAGTRGDL 240

Query: 241 LVKQFVRTLKGNAFDWYTDLEPESIDSWEQLERDFLNRFYSTRRIVSMIELTATKQRKGE 300
           LVKQFVRTLKGNAFDWY DLEPESID+WEQLERDFLNRFYSTRRIVSM+ELT T+Q+KGE
Sbjct: 241 LVKQFVRTLKGNAFDWYIDLEPESIDNWEQLERDFLNRFYSTRRIVSMMELTNTRQQKGE 300

Query: 301 PVIDYINRWRALSLDCKDRLTELSAVEVCTQGMHWGLLYILQGIKPCTFEELATRAHYME 333
            VIDYINRWRALSLDCKDRLTELSAVE+CTQGMHWGLLYILQ IKP TFEELATRAH ME
Sbjct: 301 LVIDYINRWRALSLDCKDRLTELSAVEMCTQGMHWGLLYILQRIKPRTFEELATRAHDME 360

[Close]

BLAST of Pay0013685 vs. NCBI nr
Match: KAA0047477.1 (uncharacterized protein E6C27_scaffold498G00940 [Cucumis melo var. makuwa])

HSP 1 Score: 605.5 bits (1560), Expect = 2.8e-169
Identity = 312/364 (85.71%), Postives = 320/364 (87.91%), Query Frame = 0


Query: 1   MTSQGNTSKALSDIGKRLNTRSHSREIQSSEDMPPFEVAKNIWDQISKPPKGGIVIKENL 60
           MTSQGNTSKALSDIGKR NTRS SREIQSSEDMPPF+VAKNIW+QISKPPKGGIVIKEN 
Sbjct: 1   MTSQGNTSKALSDIGKRPNTRSRSREIQSSEDMPPFDVAKNIWEQISKPPKGGIVIKENP 60

Query: 61  AIDEHNSLSDRSNEEAPQPNIMSVMVTDVDTSEDRMAELEKK------------------ 120
           A+DEHNSLS+RSNEE PQPNIMSVMVTDVDTSEDRMAELEKK                  
Sbjct: 61  AMDEHNSLSERSNEEVPQPNIMSVMVTDVDTSEDRMAELEKKVNMLMKAVEERDFEIALL 120

Query: 121 ------------SHTH-YKNVNKGKAVMQESQPQNSTSITSLSVQQLQEMIANSIKTQYG 180
                       SHTH  KN NKGKA+MQESQPQNSTSI SLSVQQLQEMIANSIKTQYG
Sbjct: 121 KNHIESRDAAESSHTHTIKNANKGKAIMQESQPQNSTSIASLSVQQLQEMIANSIKTQYG 180

Query: 181 GLLKTFSLSSKPYTKRIDNMRMPHGYQPLKFQQFDGKGNPKQHIAHFIETCETAGTRGDL 240
           G  +TFSL SKPYTKRIDNMRMPHGYQP KFQQFDGKGNPKQH+AHFIETCETAGTRGDL
Sbjct: 181 GPAQTFSLYSKPYTKRIDNMRMPHGYQPPKFQQFDGKGNPKQHVAHFIETCETAGTRGDL 240

Query: 241 LVKQFVRTLKGNAFDWYTDLEPESIDSWEQLERDFLNRFYSTRRIVSMIELTATKQRKGE 300
           LVKQFVRTLKGNAFDWYTDLEPESIDSWEQLERDFLNRFYSTRRIVSMIELTATKQRKGE
Sbjct: 241 LVKQFVRTLKGNAFDWYTDLEPESIDSWEQLERDFLNRFYSTRRIVSMIELTATKQRKGE 300

Query: 301 PVIDYINRWRALSLDCKDRLTELSAVEVCTQGMHWGLLYILQGIKPCTFEELATRAHYME 334
           PVIDYINRWRALSLDCKDRLTELSAVE+CTQGMHWGLLYILQGIKP TFEELATRAH ME
Sbjct: 301 PVIDYINRWRALSLDCKDRLTELSAVEMCTQGMHWGLLYILQGIKPRTFEELATRAHDME 360

[Close]

BLAST of Pay0013685 vs. NCBI nr
Match: KAA0059562.1 (ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 578.2 bits (1489), Expect = 4.7e-161
Identity = 299/364 (82.14%), Postives = 315/364 (86.54%), Query Frame = 0


Query: 1   MTSQGNTSKALSDIGKRLNTRSHSREIQSSEDMPPFEVAKNIWDQISKPPKGGIVIKENL 60
           MTSQGNTSKALSDIGKR NTRS SREIQSSEDMPPFEVAKNIW+QISKPPKGGIVIKEN 
Sbjct: 1   MTSQGNTSKALSDIGKRPNTRSRSREIQSSEDMPPFEVAKNIWEQISKPPKGGIVIKENT 60

Query: 61  AIDEHNSLSDRSNEEAPQPNIMSVMVTDVDTSEDRMAELEKK------------------ 120
           A+DEHNSLS+ SNEE PQPNIMSVMVT+VDTSE+RMAELEKK                  
Sbjct: 61  AVDEHNSLSECSNEEVPQPNIMSVMVTNVDTSENRMAELEKKVNMLMKVVEERDYEIAFL 120

Query: 121 ------------SHTH-YKNVNKGKAVMQESQPQNSTSITSLSVQQLQEMIANSIKTQYG 180
                       SH H  KN +KGKAVMQESQPQNSTSI SLSVQQLQEMIA+SIKTQYG
Sbjct: 121 KNHIESRDAAESSHKHTVKNTDKGKAVMQESQPQNSTSIASLSVQQLQEMIASSIKTQYG 180

Query: 181 GLLKTFSLSSKPYTKRIDNMRMPHGYQPLKFQQFDGKGNPKQHIAHFIETCETAGTRGDL 240
           G  +TFSL SKPYTKRIDN+RMP+GYQP KFQQFDGKGNPKQH+AHFIETCETAGTRGDL
Sbjct: 181 GPAQTFSLYSKPYTKRIDNLRMPNGYQPPKFQQFDGKGNPKQHVAHFIETCETAGTRGDL 240

Query: 241 LVKQFVRTLKGNAFDWYTDLEPESIDSWEQLERDFLNRFYSTRRIVSMIELTATKQRKGE 300
           LVKQFVRTLKGNAFDWY DLEPESID+WEQLERDFLNRFYSTRRIVSM+ELT T+Q+KGE
Sbjct: 241 LVKQFVRTLKGNAFDWYIDLEPESIDNWEQLERDFLNRFYSTRRIVSMMELTNTRQQKGE 300

Query: 301 PVIDYINRWRALSLDCKDRLTELSAVEVCTQGMHWGLLYILQGIKPCTFEELATRAHYME 334
            VIDYINRWRALSLDCKDRLTELSAVE+CTQGMHWGLLYILQGIKP TFEELATRAH ME
Sbjct: 301 LVIDYINRWRALSLDCKDRLTELSAVEMCTQGMHWGLLYILQGIKPRTFEELATRAHDME 360

[Close]

BLAST of Pay0013685 vs. NCBI nr
Match: KAA0037441.1 (ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 562.0 bits (1447), Expect = 3.5e-156
Identity = 293/364 (80.49%), Postives = 309/364 (84.89%), Query Frame = 0


Query: 1   MTSQGNTSKALSDIGKRLNTRSHSREIQSSEDMPPFEVAKNIWDQISKPPKGGIVIKENL 60
           MTSQGNTSKALSDIGKR NTRS SREIQSSEDMPPFEVAKNIW+QISKPPKGGIVIKEN 
Sbjct: 1   MTSQGNTSKALSDIGKRPNTRSRSREIQSSEDMPPFEVAKNIWEQISKPPKGGIVIKENH 60

Query: 61  AIDEHNSLSDRSNEEAPQPNIMSVMVTDVDTSEDRMAELEKK------------------ 120
           AIDEH S S  S+EE P PNIMSVMVT+VDTSE+RMAELEKK                  
Sbjct: 61  AIDEHYSSSKPSSEEMPHPNIMSVMVTNVDTSENRMAELEKKVNMLMKVVEERDYEIAFL 120

Query: 121 ------------SHTH-YKNVNKGKAVMQESQPQNSTSITSLSVQQLQEMIANSIKTQYG 180
                       SH H  KN +KGKAVMQESQPQNSTSI SLSVQQLQEMIA+SIKTQYG
Sbjct: 121 KNHIESCDAAESSHKHTVKNTDKGKAVMQESQPQNSTSIASLSVQQLQEMIASSIKTQYG 180

Query: 181 GLLKTFSLSSKPYTKRIDNMRMPHGYQPLKFQQFDGKGNPKQHIAHFIETCETAGTRGDL 240
           G  +TFSL SKPYTKRIDN+RMP+GYQP  FQQFDGKGNPKQH+AHFIETCETAGTRGDL
Sbjct: 181 GPAQTFSLYSKPYTKRIDNLRMPNGYQPPNFQQFDGKGNPKQHVAHFIETCETAGTRGDL 240

Query: 241 LVKQFVRTLKGNAFDWYTDLEPESIDSWEQLERDFLNRFYSTRRIVSMIELTATKQRKGE 300
           LVKQF+RTLKGNAFDWY DLEPESID+WEQLERDFLNRFYSTRRIVSM+ELT T+Q+KGE
Sbjct: 241 LVKQFIRTLKGNAFDWYIDLEPESIDNWEQLERDFLNRFYSTRRIVSMMELTNTRQQKGE 300

Query: 301 PVIDYINRWRALSLDCKDRLTELSAVEVCTQGMHWGLLYILQGIKPCTFEELATRAHYME 334
            VIDYINRWRALSLDCKDRLTELSAVE+CTQGMHWGLLYILQ IKP TFEELATRAH ME
Sbjct: 301 LVIDYINRWRALSLDCKDRLTELSAVEMCTQGMHWGLLYILQEIKPRTFEELATRAHDME 360

[Close]

BLAST of Pay0013685 vs. NCBI nr
Match: TYK03695.1 (retrotransposon gag protein [Cucumis melo var. makuwa])

HSP 1 Score: 562.0 bits (1447), Expect = 3.5e-156
Identity = 294/363 (80.99%), Postives = 310/363 (85.40%), Query Frame = 0


Query: 1   MTSQGNTSKALSDIGKRLNTRSHSREIQSSEDMPPFEVAKNIWDQISKPPKGGIVIKENL 60
           MTSQGNTSKALS IGKR NT S SREIQS EDMPPFEVAKNIW+QISKPPKGGIVIKEN 
Sbjct: 1   MTSQGNTSKALSYIGKRPNTHSCSREIQSFEDMPPFEVAKNIWEQISKPPKGGIVIKENP 60

Query: 61  AIDEHNSLSDRSNEEAPQPNIMSVMVTDVDTSEDRMAELEKK------------------ 120
           A+DEHNSLS+ SNEE PQPNIMSVMVT+VDTSE+RMAELEKK                  
Sbjct: 61  AVDEHNSLSECSNEEVPQPNIMSVMVTNVDTSENRMAELEKKVNMLMKVVEERDYEIAFL 120

Query: 121 ------------SHTH-YKNVNKGKAVMQESQPQNSTSITSLSVQQLQEMIANSIKTQYG 180
                       SH H  KN +KGKAVMQESQPQNSTSI SLSVQQLQEMIA+SIKTQYG
Sbjct: 121 KNHIESRDAAESSHKHTVKNTDKGKAVMQESQPQNSTSIASLSVQQLQEMIASSIKTQYG 180

Query: 181 GLLKTFSLSSKPYTKRIDNMRMPHGYQPLKFQQFDGKGNPKQHIAHFIETCETAGTRGDL 240
           G  +TFSL SKPYTKRIDN+RMP+GYQP KFQQFDGKGNPKQH+AHFIETCETAGTRGDL
Sbjct: 181 GPAQTFSLYSKPYTKRIDNLRMPNGYQPPKFQQFDGKGNPKQHVAHFIETCETAGTRGDL 240

Query: 241 LVKQFVRTLKGNAFDWYTDLEPESIDSWEQLERDFLNRFYSTRRIVSMIELTATKQRKGE 300
           LVKQFVRTLKGNAFD Y DLEPESID+WEQLERDFLNRFYSTRRIVSM+ELT T+Q+KGE
Sbjct: 241 LVKQFVRTLKGNAFDLYMDLEPESIDNWEQLERDFLNRFYSTRRIVSMMELTNTRQQKGE 300

Query: 301 PVIDYINRWRALSLDCKDRLTELSAVEVCTQGMHWGLLYILQGIKPCTFEELATRAHYME 333
            VIDYINRWRALSLDCKDRLTELSAVE+CTQGMHWGLLYILQGIKP TFEELATRAH ME
Sbjct: 301 LVIDYINRWRALSLDCKDRLTELSAVEMCTQGMHWGLLYILQGIKPRTFEELATRAHDME 360

[Close]

BLAST of Pay0013685 vs. NCBI nr
Match: TYK14887.1 (ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 560.5 bits (1443), Expect = 1.0e-155
Identity = 293/363 (80.72%), Postives = 308/363 (84.85%), Query Frame = 0


Query: 1   MTSQGNTSKALSDIGKRLNTRSHSREIQSSEDMPPFEVAKNIWDQISKPPKGGIVIKENL 60
           MTSQGNTSKALSDIGKR NTRS SREIQSSEDMPPFEVAKNIW+QISKPPKGGIVIKEN 
Sbjct: 1   MTSQGNTSKALSDIGKRPNTRSRSREIQSSEDMPPFEVAKNIWEQISKPPKGGIVIKENH 60

Query: 61  AIDEHNSLSDRSNEEAPQPNIMSVMVTDVDTSEDRMAELEKK------------------ 120
           AIDEH S S  S+EE P PNIMSVMVT+VDTSE+RMAELEKK                  
Sbjct: 61  AIDEHYSSSKPSSEEMPHPNIMSVMVTNVDTSENRMAELEKKVNMLMKVVEERDYEIAFL 120

Query: 121 ------------SHTH-YKNVNKGKAVMQESQPQNSTSITSLSVQQLQEMIANSIKTQYG 180
                       SH H  KN +KGKAVMQESQPQN TSI SLSVQQLQEMIA+SIKTQYG
Sbjct: 121 KNHIESRDAAESSHKHTVKNTDKGKAVMQESQPQNLTSIASLSVQQLQEMIASSIKTQYG 180

Query: 181 GLLKTFSLSSKPYTKRIDNMRMPHGYQPLKFQQFDGKGNPKQHIAHFIETCETAGTRGDL 240
           G  +TFSL SKPYTKRIDN+RMP+GYQP KFQQFDGKGNPKQH+AHFIETCETAGTRGDL
Sbjct: 181 GPAQTFSLYSKPYTKRIDNLRMPNGYQPPKFQQFDGKGNPKQHVAHFIETCETAGTRGDL 240

Query: 241 LVKQFVRTLKGNAFDWYTDLEPESIDSWEQLERDFLNRFYSTRRIVSMIELTATKQRKGE 300
           LVKQFVRTLKGNAFDWY DLEPESID+WEQLERDFLNRFYSTRRIVSM+ELT T+Q+KGE
Sbjct: 241 LVKQFVRTLKGNAFDWYIDLEPESIDNWEQLERDFLNRFYSTRRIVSMMELTNTRQQKGE 300

Query: 301 PVIDYINRWRALSLDCKDRLTELSAVEVCTQGMHWGLLYILQGIKPCTFEELATRAHYME 333
            VIDYINRWRALSLDCKDRLTELSAVE+CTQGMHWGLLYILQ IKP TFEELATRAH ME
Sbjct: 301 LVIDYINRWRALSLDCKDRLTELSAVEMCTQGMHWGLLYILQRIKPRTFEELATRAHDME 360

The following BLAST results are available for this feature:

BLAST of Pay0013685 vs.


Match Name	E-value	Identity	Description

BLAST of Pay0013685 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7TZU9	1.3e-169	85.71	Ribonuclease H OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold498G00940...	[more]
A0A5A7UUI7	2.3e-161	82.14	Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C2...	[more]
A0A5A7T777	1.7e-156	80.49	Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C2...	[more]
A0A5D3BX77	1.7e-156	80.99	Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaf...	[more]
A0A5D3CSH0	5.0e-156	80.72	Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E567...	[more]

BLAST of Pay0013685 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0047477.1	2.8e-169	85.71	uncharacterized protein E6C27_scaffold498G00940 [Cucumis melo var. makuwa]	[more]
KAA0059562.1	4.7e-161	82.14	ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]	[more]
KAA0037441.1	3.5e-156	80.49	ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]	[more]
TYK03695.1	3.5e-156	80.99	retrotransposon gag protein [Cucumis melo var. makuwa]	[more]
TYK14887.1	1.0e-155	80.72	ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]	[more]

BLAST of Pay0013685 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (Payzawat) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR005162	Retrotransposon gag domain	PFAM	PF03732	Retrotrans_gag	coord: 214..303 e-value: 2.9E-11 score: 43.5
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..33
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 16..30
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..15
None	No IPR available	PANTHER	PTHR33223	FAMILY NOT NAMED	coord: 70..331

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Pay0013685.1	Pay0013685.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0071897	DNA biosynthetic process
biological_process	GO:0015074	DNA integration
biological_process	GO:0006310	DNA recombination
biological_process	GO:0090502	RNA phosphodiester bond hydrolysis, endonucleolytic
molecular_function	GO:0003887	DNA-directed DNA polymerase activity
molecular_function	GO:0003723	RNA binding
molecular_function	GO:0004523	RNA-DNA hybrid ribonuclease activity