Pay0013430 (gene) Melon (Payzawat) v1

Overview


Name	Pay0013430
Type	gene
Organism	Cucumis melo L. var. inodorus cv. Payzawat (Melon (Payzawat) v1)
Description	Retrotransposon protein
Location	chr08: 7922221 .. 7923221 (+)
RNA-Seq Expression	Pay0013430
Synteny	Pay0013430

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCAAGTTTGTCACGAGCACCGAAACATACATGGACTGAAAAGGAAGAAGCAAAACTTGTTGAGTGCTTGGTGGAATTGGTTTCATCTGGGGGATGGAGGTCCGATAATGGGACATTTCGACCTGGGTACCTGGCCCAATTGCAATGAATGATGGCAGAGAAGTTGCCCGGCACTAATATCCAAGCATCACCGACAATAGATTGTCGTGTGAAATCTCTTAAAAAAACCTACCATGCAATTGCAGAAATGAGGGGCCCATCATGTAGTGGCTTTGGATGGAATGAAGAATTCCAATGCATCATCGTAGAACGGGATTTGTTTGATAGTTGGGTTAAGGTATTAATTTCATAATGCAATTATACATATTTTTTATAATCACAATCATCAACTAATCTCCCTAAGTTACATTTGTACAGAGTCATCCTGCAACCAAAGGCCTTCTACACAAATCATTTCCATATTATGATGATCTGACCTATGTCTTTGGCAAAGATCGGGCAACAGGAGCACGTTCAGAGACCTTTGTTGATGTAGGATCTAATGTGCCAAACATGTTTAATGACACAATTCCCCTTGGTGATTCACATGATGAAGACATCCCGACGATGTATAGCCAAGGAGTGCATATATCACCAGATGAGATGTTTGGAATACGTGCAGGTCAAGCAAGTGAGAGAAGAAATTGTTCAAGTGGAAGTAAAAGGAAATGAGGTAGCGAACGTTATGAAATGGTAGAGGTGATCAGGAGTGTAATGGAATTTGGAAATGAGCAATTAAAGGCAATTGCAGATTGGCCAAAAGAGAAGCATACAATGGAGATCGAAATGCGTGCTCAAGTTGTGAAACAACTGCAAGATATCCCCGAACTACGAAGCCAATATAGGACAAAGCTTAAGCAAATCTTATTCCGTAGTTTGGAGGCCATTGAGGGATTCTTGTCGATTCCAACAGAACTTAAATTGGAGTATTGCAATATTCTCTTGCAAAATAATGTTTGA

mRNA sequence

ATGGCAAGTTTGTCACGAGCACCGAAACATACATGGACTGAAAAGGAAGAAGCAAAACTTGTTGAGTGCTTGGTGGAATTGGTTTCATCTGGGGGATGGAGGTCCGATAATGGGACATTTCGACCTGGGTACCTGTTGCCCGGCACTAATATCCAAGCATCACCGACAATAGATTGTCGTGTGAAATCTCTTAAAAAAACCTACCATGCAATTGCAGAAATGAGGGGCCCATCATGTAGTGGCTTTGGATGGAATGAAGAATTCCAATGCATCATCGTAGAACGGGATTTGTTTGATAGTTGGGTTAAGAGTCATCCTGCAACCAAAGGCCTTCTACACAAATCATTTCCATATTATGATGATCTGACCTATGTCTTTGGCAAAGATCGGGCAACAGGAGCACGTTCAGAGACCTTTGTTGATGTAGGATCTAATGTGCCAAACATGTTTAATGACACAATTCCCCTTGGTGATTCACATGATGAAGACATCCCGACGATGTATAGCCAAGGAGTGCATATATCACCAGATGAGATGTTTGGAATACGTGCAGGTCAAGCAAGTGAGAGAAGAAATTGTTCAAGTGGAAAGGTGATCAGGAGTGTAATGGAATTTGGAAATGAGCAATTAAAGGCAATTGCAGATTGGCCAAAAGAGAAGCATACAATGGAGATCGAAATGCGTGCTCAAGTTGTGAAACAACTGCAAGATATCCCCGAACTACGAAGCCAATATAGGACAAAGCTTAAGCAAATCTTATTCCGTAGTTTGGAGGCCATTGAGGGATTCTTGTCGATTCCAACAGAACTTAAATTGGAGTATTGCAATATTCTCTTGCAAAATAATGTTTGA

Coding sequence (CDS)

ATGGCAAGTTTGTCACGAGCACCGAAACATACATGGACTGAAAAGGAAGAAGCAAAACTTGTTGAGTGCTTGGTGGAATTGGTTTCATCTGGGGGATGGAGGTCCGATAATGGGACATTTCGACCTGGGTACCTGTTGCCCGGCACTAATATCCAAGCATCACCGACAATAGATTGTCGTGTGAAATCTCTTAAAAAAACCTACCATGCAATTGCAGAAATGAGGGGCCCATCATGTAGTGGCTTTGGATGGAATGAAGAATTCCAATGCATCATCGTAGAACGGGATTTGTTTGATAGTTGGGTTAAGAGTCATCCTGCAACCAAAGGCCTTCTACACAAATCATTTCCATATTATGATGATCTGACCTATGTCTTTGGCAAAGATCGGGCAACAGGAGCACGTTCAGAGACCTTTGTTGATGTAGGATCTAATGTGCCAAACATGTTTAATGACACAATTCCCCTTGGTGATTCACATGATGAAGACATCCCGACGATGTATAGCCAAGGAGTGCATATATCACCAGATGAGATGTTTGGAATACGTGCAGGTCAAGCAAGTGAGAGAAGAAATTGTTCAAGTGGAAAGGTGATCAGGAGTGTAATGGAATTTGGAAATGAGCAATTAAAGGCAATTGCAGATTGGCCAAAAGAGAAGCATACAATGGAGATCGAAATGCGTGCTCAAGTTGTGAAACAACTGCAAGATATCCCCGAACTACGAAGCCAATATAGGACAAAGCTTAAGCAAATCTTATTCCGTAGTTTGGAGGCCATTGAGGGATTCTTGTCGATTCCAACAGAACTTAAATTGGAGTATTGCAATATTCTCTTGCAAAATAATGTTTGA

Protein sequence

MASLSRAPKHTWTEKEEAKLVECLVELVSSGGWRSDNGTFRPGYLLPGTNIQASPTIDCRVKSLKKTYHAIAEMRGPSCSGFGWNEEFQCIIVERDLFDSWVKSHPATKGLLHKSFPYYDDLTYVFGKDRATGARSETFVDVGSNVPNMFNDTIPLGDSHDEDIPTMYSQGVHISPDEMFGIRAGQASERRNCSSGKVIRSVMEFGNEQLKAIADWPKEKHTMEIEMRAQVVKQLQDIPELRSQYRTKLKQILFRSLEAIEGFLSIPTELKLEYCNILLQNNV

Homology

[Close]

BLAST of Pay0013430 vs. ExPASy TrEMBL
Match: A0A5A7U0H7 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold648G002060 PE=4 SV=1)

HSP 1 Score: 516.2 bits (1328), Expect = 8.9e-143
Identity = 257/306 (83.99%), Postives = 267/306 (87.25%), Query Frame = 0


Query: 1   MASLSRAPKHTWTEKEEAKLVECLVELVSSGGWRSDNGTFRPGYL----------LPGTN 60
           MASLSRAPKHTWT++EE K VECLVELVSSGGWRSDNGTF+PGYL          LPGTN
Sbjct: 1   MASLSRAPKHTWTKEEEEKFVECLVELVSSGGWRSDNGTFQPGYLAQLQRMMAEKLPGTN 60

Query: 61  IQASPTIDCRVKSLKKTYHAIAEMRGPSCSGFGWNEEFQCIIVERDLFDSWVKSHPATKG 120
           IQ S TIDC VKSLKKTYHAIAEMRGPSCSGFGWNEEFQCII ERDLFDSW+KSHPA KG
Sbjct: 61  IQESSTIDCHVKSLKKTYHAIAEMRGPSCSGFGWNEEFQCIIAERDLFDSWIKSHPAAKG 120

Query: 121 LLHKSFPYYDDLTYVFGKDRATGARSETFVDVGSNVPNMFNDTIPLGDSHDEDIPTMYSQ 180
           LLHKSFPYYDDL+YVFGKDRATGARSETF +VGSNV NMFNDTIPLGDSHDEDIPTMYSQ
Sbjct: 121 LLHKSFPYYDDLSYVFGKDRATGARSETFPNVGSNVSNMFNDTIPLGDSHDEDIPTMYSQ 180

Query: 181 GVHISPDEMFGIRAGQASERRNCSS-------------GKVIRSVMEFGNEQLKAIADWP 240
           GVH+SPDEMFGIRAGQASERRNCSS              +VIRSVMEFGNEQLKAIADWP
Sbjct: 181 GVHMSPDEMFGIRAGQASERRNCSSVSKRKRGSERYETVEVIRSVMEFGNEQLKAIADWP 240

Query: 241 KEKHTMEIEMRAQVVKQLQDIPELRSQYRTKLKQILFRSLEAIEGFLSIPTELKLEYCNI 284
           KEK  ME+EMRAQVVKQLQDIP+LRSQ R KL QILFRSLEAIEGFLSIPTELKLEYCNI
Sbjct: 241 KEKRAMEVEMRAQVVKQLQDIPKLRSQDRAKLMQILFRSLEAIEGFLSIPTELKLEYCNI 300

[Close]

BLAST of Pay0013430 vs. ExPASy TrEMBL
Match: A0A1S3B4L3 (uncharacterized protein LOC103485953 OS=Cucumis melo OX=3656 GN=LOC103485953 PE=4 SV=1)

HSP 1 Score: 516.2 bits (1328), Expect = 8.9e-143
Identity = 257/306 (83.99%), Postives = 267/306 (87.25%), Query Frame = 0


Query: 1   MASLSRAPKHTWTEKEEAKLVECLVELVSSGGWRSDNGTFRPGYL----------LPGTN 60
           MASLSRAPKHTWT++EE K VECLVELVSSGGWRSDNGTF+PGYL          LPGTN
Sbjct: 1   MASLSRAPKHTWTKEEEEKFVECLVELVSSGGWRSDNGTFQPGYLAQLQRMMAEKLPGTN 60

Query: 61  IQASPTIDCRVKSLKKTYHAIAEMRGPSCSGFGWNEEFQCIIVERDLFDSWVKSHPATKG 120
           IQ S TIDC VKSLKKTYHAIAEMRGPSCSGFGWNEEFQCII ERDLFDSW+KSHPA KG
Sbjct: 61  IQESSTIDCHVKSLKKTYHAIAEMRGPSCSGFGWNEEFQCIIAERDLFDSWIKSHPAAKG 120

Query: 121 LLHKSFPYYDDLTYVFGKDRATGARSETFVDVGSNVPNMFNDTIPLGDSHDEDIPTMYSQ 180
           LLHKSFPYYDDL+YVFGKDRATGARSETF +VGSNV NMFNDTIPLGDSHDEDIPTMYSQ
Sbjct: 121 LLHKSFPYYDDLSYVFGKDRATGARSETFPNVGSNVSNMFNDTIPLGDSHDEDIPTMYSQ 180

Query: 181 GVHISPDEMFGIRAGQASERRNCSS-------------GKVIRSVMEFGNEQLKAIADWP 240
           GVH+SPDEMFGIRAGQASERRNCSS              +VIRSVMEFGNEQLKAIADWP
Sbjct: 181 GVHMSPDEMFGIRAGQASERRNCSSVSKRKRGSERYETVEVIRSVMEFGNEQLKAIADWP 240

Query: 241 KEKHTMEIEMRAQVVKQLQDIPELRSQYRTKLKQILFRSLEAIEGFLSIPTELKLEYCNI 284
           KEK  ME+EMRAQVVKQLQDIP+LRSQ R KL QILFRSLEAIEGFLSIPTELKLEYCNI
Sbjct: 241 KEKRAMEVEMRAQVVKQLQDIPKLRSQDRAKLMQILFRSLEAIEGFLSIPTELKLEYCNI 300

[Close]

BLAST of Pay0013430 vs. ExPASy TrEMBL
Match: A0A5D3DG22 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold523G00290 PE=3 SV=1)

HSP 1 Score: 386.3 bits (991), Expect = 1.1e-103
Identity = 192/215 (89.30%), Postives = 194/215 (90.23%), Query Frame = 0


Query: 69  HAIAEMRGPSCSGFGWNEEFQCIIVERDLFDSWVKSHPATKGLLHKSFPYYDDLTYVFGK 128
           H   EMRGPSCSGFGWNEEFQCII ERDLFDSWVKSHPATKGLLHKSFPYYDDL+YVFGK
Sbjct: 361 HFNLEMRGPSCSGFGWNEEFQCIIAERDLFDSWVKSHPATKGLLHKSFPYYDDLSYVFGK 420

Query: 129 DRATGARSETFVDVGSNVPNMFNDTIPLGDSHDEDIPTMYSQGVHISPDEMFGIRAGQAS 188
           DRATGARSETFVDVGSNVPNMFNDTIPLGDSHDEDIPTMYSQGVHISPDEMFGIRA    
Sbjct: 421 DRATGARSETFVDVGSNVPNMFNDTIPLGDSHDEDIPTMYSQGVHISPDEMFGIRA---- 480

Query: 189 ERRNCSSGKVIRSVMEFGNEQLKAIADWPKEKHTMEIEMRAQVVKQLQDIPELRSQYRTK 248
                   +VIRSVMEFGNEQLKAIADW KEK  MEIEMRAQVVKQLQDIPELRSQYRTK
Sbjct: 481 --------EVIRSVMEFGNEQLKAIADWTKEKRAMEIEMRAQVVKQLQDIPELRSQYRTK 540

Query: 249 LKQILFRSLEAIEGFLSIPTELKLEYCNILLQNNV 284
           L QILFRSLEAI GFLSIPTELKLEYCNILLQNNV
Sbjct: 541 LMQILFRSLEAIGGFLSIPTELKLEYCNILLQNNV 563

[Close]

BLAST of Pay0013430 vs. ExPASy TrEMBL
Match: A0A5D3BZU3 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold409G00280 PE=4 SV=1)

HSP 1 Score: 357.8 bits (917), Expect = 4.1e-95
Identity = 192/306 (62.75%), Postives = 211/306 (68.95%), Query Frame = 0


Query: 1   MASLSRAPKHTWTEKEEAKLVECLVELVSSGGWRSDNGTFRPGYL----------LPGTN 60
           MAS SRA KH WT++EEAKLVECLVELVS+GGWRSDNGTFR GYL          LP TN
Sbjct: 1   MASSSRATKHAWTKEEEAKLVECLVELVSAGGWRSDNGTFRHGYLTQLQRMMAEKLPDTN 60

Query: 61  IQASPTIDCRVKSLKKTYHAIAEMRGPSCSGFGWNEEFQCIIVERDLFDSWVKSHPATKG 120
           IQ SPTIDCR                                           SHPA KG
Sbjct: 61  IQGSPTIDCR-------------------------------------------SHPAAKG 120

Query: 121 LLHKSFPYYDDLTYVFGKDRATGARSETFVDVGSNVPNMFNDTIPLGDSHDEDIPTMYSQ 180
           LLHKSFPYYDDL+YVFG D ATGA SETF D GSNV NMFND +PLGDSH++DI T+YSQ
Sbjct: 121 LLHKSFPYYDDLSYVFGNDGATGAHSETFADGGSNVSNMFNDGVPLGDSHNQDILTIYSQ 180

Query: 181 GVHISPDEMFGIRAGQASERRNCSSG-------------KVIRSVMEFGNEQLKAIADWP 240
           GVH+S DE+FGIRAGQASERRN SSG             +VI S  EFGN+QLK I DWP
Sbjct: 181 GVHMSLDEIFGIRAGQASERRNYSSGSKRKRGSKHYEMVEVISSATEFGNDQLKTITDWP 240

Query: 241 KEKHTMEIEMRAQVVKQLQDIPELRSQYRTKLKQILFRSLEAIEGFLSIPTELKLEYCNI 284
           KEK   E+E+R +VVKQLQDIP+LRSQ R KL QILFRS+EAIEGFLSIPT+LKLEYCNI
Sbjct: 241 KEKRATEVELRTEVVKQLQDIPQLRSQDRAKLMQILFRSVEAIEGFLSIPTKLKLEYCNI 263

[Close]

BLAST of Pay0013430 vs. ExPASy TrEMBL
Match: A0A5D3DPR5 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold259G00580 PE=4 SV=1)

HSP 1 Score: 320.1 bits (819), Expect = 9.4e-84
Identity = 155/305 (50.82%), Postives = 212/305 (69.51%), Query Frame = 0


Query: 1   MASLSRAPKHTWTEKEEAKLVECLVELVSSGGWRSDNGTFRPGYL----------LPGTN 60
           M S SR PKHTWT++EEA LVECLVELV++GGWRSDNGTFRPGYL          +PG+N
Sbjct: 1   MTSSSRLPKHTWTKEEEAGLVECLVELVNAGGWRSDNGTFRPGYLNQLARMMAFKIPGSN 60

Query: 61  IQASPTIDCRVKSLKKTYHAIAEMRGPSCSGFGWNEEFQCIIVERDLFDSWVKSHPATKG 120
           I AS TID R+K +K+ +HA+AEMRGP+CSGFGWN+E +CI+ E+++FD W  SHPA KG
Sbjct: 61  IHAS-TIDSRIKLMKRMFHALAEMRGPNCSGFGWNDEKKCIVAEKEVFDDW--SHPAAKG 120

Query: 121 LLHKSFPYYDDLTYVFGKDRATGARSETFVDVGSNVPNMFNDTIPLGDSHDEDIPTMYSQ 180
           LL+KSF +YD+L+YVFGKDRATG R+E+F D+GSN P  + D +      D D P MYS 
Sbjct: 121 LLNKSFVHYDELSYVFGKDRATGGRAESFADIGSNDPPGY-DAVAADAMPDTDFPPMYSP 180

Query: 181 GVHISPDEMFGIRAGQASERRNCSSGK-------------VIRSVMEFGNEQLKAIADWP 240
           G+++SPD++   R  + SERRN SSG              ++R+ +E+GNEQL  IA+WP
Sbjct: 181 GLNMSPDDLMETRTARVSERRNVSSGSKRKRPGHATDSGDIVRTAIEYGNEQLHRIAEWP 240

Query: 241 KEKHTMEIEMRAQVVKQLQDIPELRSQYRTKLKQILFRSLEAIEGFLSIPTELKLEYCNI 283
             +     + R ++V+ L+ IPEL    R +L +IL R+++ ++ FL +P  +K  YC++
Sbjct: 241 ILQRQDATQTRQEIVRHLEAIPELTLMDRCRLMRILMRNVDDMKAFLEVPDHMKYPYCSL 300

[Close]

BLAST of Pay0013430 vs. NCBI nr
Match: XP_008441954.1 (PREDICTED: uncharacterized protein LOC103485953 [Cucumis melo] >KAA0047736.1 retrotransposon protein [Cucumis melo var. makuwa] >TYK08388.1 retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 516.2 bits (1328), Expect = 1.8e-142
Identity = 257/306 (83.99%), Postives = 267/306 (87.25%), Query Frame = 0


Query: 1   MASLSRAPKHTWTEKEEAKLVECLVELVSSGGWRSDNGTFRPGYL----------LPGTN 60
           MASLSRAPKHTWT++EE K VECLVELVSSGGWRSDNGTF+PGYL          LPGTN
Sbjct: 1   MASLSRAPKHTWTKEEEEKFVECLVELVSSGGWRSDNGTFQPGYLAQLQRMMAEKLPGTN 60

Query: 61  IQASPTIDCRVKSLKKTYHAIAEMRGPSCSGFGWNEEFQCIIVERDLFDSWVKSHPATKG 120
           IQ S TIDC VKSLKKTYHAIAEMRGPSCSGFGWNEEFQCII ERDLFDSW+KSHPA KG
Sbjct: 61  IQESSTIDCHVKSLKKTYHAIAEMRGPSCSGFGWNEEFQCIIAERDLFDSWIKSHPAAKG 120

Query: 121 LLHKSFPYYDDLTYVFGKDRATGARSETFVDVGSNVPNMFNDTIPLGDSHDEDIPTMYSQ 180
           LLHKSFPYYDDL+YVFGKDRATGARSETF +VGSNV NMFNDTIPLGDSHDEDIPTMYSQ
Sbjct: 121 LLHKSFPYYDDLSYVFGKDRATGARSETFPNVGSNVSNMFNDTIPLGDSHDEDIPTMYSQ 180

Query: 181 GVHISPDEMFGIRAGQASERRNCSS-------------GKVIRSVMEFGNEQLKAIADWP 240
           GVH+SPDEMFGIRAGQASERRNCSS              +VIRSVMEFGNEQLKAIADWP
Sbjct: 181 GVHMSPDEMFGIRAGQASERRNCSSVSKRKRGSERYETVEVIRSVMEFGNEQLKAIADWP 240

Query: 241 KEKHTMEIEMRAQVVKQLQDIPELRSQYRTKLKQILFRSLEAIEGFLSIPTELKLEYCNI 284
           KEK  ME+EMRAQVVKQLQDIP+LRSQ R KL QILFRSLEAIEGFLSIPTELKLEYCNI
Sbjct: 241 KEKRAMEVEMRAQVVKQLQDIPKLRSQDRAKLMQILFRSLEAIEGFLSIPTELKLEYCNI 300

[Close]

BLAST of Pay0013430 vs. NCBI nr
Match: KAA0062747.1 (retrotransposon protein [Cucumis melo var. makuwa] >TYK22546.1 retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 386.3 bits (991), Expect = 2.2e-103
Identity = 192/215 (89.30%), Postives = 194/215 (90.23%), Query Frame = 0


Query: 69  HAIAEMRGPSCSGFGWNEEFQCIIVERDLFDSWVKSHPATKGLLHKSFPYYDDLTYVFGK 128
           H   EMRGPSCSGFGWNEEFQCII ERDLFDSWVKSHPATKGLLHKSFPYYDDL+YVFGK
Sbjct: 361 HFNLEMRGPSCSGFGWNEEFQCIIAERDLFDSWVKSHPATKGLLHKSFPYYDDLSYVFGK 420

Query: 129 DRATGARSETFVDVGSNVPNMFNDTIPLGDSHDEDIPTMYSQGVHISPDEMFGIRAGQAS 188
           DRATGARSETFVDVGSNVPNMFNDTIPLGDSHDEDIPTMYSQGVHISPDEMFGIRA    
Sbjct: 421 DRATGARSETFVDVGSNVPNMFNDTIPLGDSHDEDIPTMYSQGVHISPDEMFGIRA---- 480

Query: 189 ERRNCSSGKVIRSVMEFGNEQLKAIADWPKEKHTMEIEMRAQVVKQLQDIPELRSQYRTK 248
                   +VIRSVMEFGNEQLKAIADW KEK  MEIEMRAQVVKQLQDIPELRSQYRTK
Sbjct: 481 --------EVIRSVMEFGNEQLKAIADWTKEKRAMEIEMRAQVVKQLQDIPELRSQYRTK 540

Query: 249 LKQILFRSLEAIEGFLSIPTELKLEYCNILLQNNV 284
           L QILFRSLEAI GFLSIPTELKLEYCNILLQNNV
Sbjct: 541 LMQILFRSLEAIGGFLSIPTELKLEYCNILLQNNV 563

[Close]

BLAST of Pay0013430 vs. NCBI nr
Match: KAA0031678.1 (retrotransposon protein [Cucumis melo var. makuwa] >TYK04432.1 retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 357.8 bits (917), Expect = 8.4e-95
Identity = 192/306 (62.75%), Postives = 211/306 (68.95%), Query Frame = 0


Query: 1   MASLSRAPKHTWTEKEEAKLVECLVELVSSGGWRSDNGTFRPGYL----------LPGTN 60
           MAS SRA KH WT++EEAKLVECLVELVS+GGWRSDNGTFR GYL          LP TN
Sbjct: 1   MASSSRATKHAWTKEEEAKLVECLVELVSAGGWRSDNGTFRHGYLTQLQRMMAEKLPDTN 60

Query: 61  IQASPTIDCRVKSLKKTYHAIAEMRGPSCSGFGWNEEFQCIIVERDLFDSWVKSHPATKG 120
           IQ SPTIDCR                                           SHPA KG
Sbjct: 61  IQGSPTIDCR-------------------------------------------SHPAAKG 120

Query: 121 LLHKSFPYYDDLTYVFGKDRATGARSETFVDVGSNVPNMFNDTIPLGDSHDEDIPTMYSQ 180
           LLHKSFPYYDDL+YVFG D ATGA SETF D GSNV NMFND +PLGDSH++DI T+YSQ
Sbjct: 121 LLHKSFPYYDDLSYVFGNDGATGAHSETFADGGSNVSNMFNDGVPLGDSHNQDILTIYSQ 180

Query: 181 GVHISPDEMFGIRAGQASERRNCSSG-------------KVIRSVMEFGNEQLKAIADWP 240
           GVH+S DE+FGIRAGQASERRN SSG             +VI S  EFGN+QLK I DWP
Sbjct: 181 GVHMSLDEIFGIRAGQASERRNYSSGSKRKRGSKHYEMVEVISSATEFGNDQLKTITDWP 240

Query: 241 KEKHTMEIEMRAQVVKQLQDIPELRSQYRTKLKQILFRSLEAIEGFLSIPTELKLEYCNI 284
           KEK   E+E+R +VVKQLQDIP+LRSQ R KL QILFRS+EAIEGFLSIPT+LKLEYCNI
Sbjct: 241 KEKRATEVELRTEVVKQLQDIPQLRSQDRAKLMQILFRSVEAIEGFLSIPTKLKLEYCNI 263

[Close]

BLAST of Pay0013430 vs. NCBI nr
Match: KAA0035621.1 (retrotransposon protein [Cucumis melo var. makuwa] >KAA0041647.1 retrotransposon protein [Cucumis melo var. makuwa] >KAA0046728.1 retrotransposon protein [Cucumis melo var. makuwa] >KAA0052099.1 retrotransposon protein [Cucumis melo var. makuwa] >KAA0054495.1 retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 320.1 bits (819), Expect = 1.9e-83
Identity = 155/305 (50.82%), Postives = 212/305 (69.51%), Query Frame = 0


Query: 1   MASLSRAPKHTWTEKEEAKLVECLVELVSSGGWRSDNGTFRPGYL----------LPGTN 60
           M S SR PKHTWT++EEA LVECLVELV++GGWRSDNGTFRPGYL          +PG+N
Sbjct: 1   MTSSSRLPKHTWTKEEEAGLVECLVELVNAGGWRSDNGTFRPGYLNQLARMMAFKIPGSN 60

Query: 61  IQASPTIDCRVKSLKKTYHAIAEMRGPSCSGFGWNEEFQCIIVERDLFDSWVKSHPATKG 120
           I AS TID R+K +K+ +HA+AEMRGP+CSGFGWN+E +CI+ E+++FD W  SHPA KG
Sbjct: 61  IHAS-TIDSRIKLMKRMFHALAEMRGPNCSGFGWNDEKKCIVAEKEVFDDW--SHPAAKG 120

Query: 121 LLHKSFPYYDDLTYVFGKDRATGARSETFVDVGSNVPNMFNDTIPLGDSHDEDIPTMYSQ 180
           LL+KSF +YD+L+YVFGKDRATG R+E+F D+GSN P  + D +      D D P MYS 
Sbjct: 121 LLNKSFVHYDELSYVFGKDRATGGRAESFADIGSNDPPGY-DAVAADAMPDTDFPPMYSP 180

Query: 181 GVHISPDEMFGIRAGQASERRNCSSGK-------------VIRSVMEFGNEQLKAIADWP 240
           G+++SPD++   R  + SERRN SSG              ++R+ +E+GNEQL  IA+WP
Sbjct: 181 GLNMSPDDLMETRTARVSERRNVSSGSKRKRPGHATDSGDIVRTAIEYGNEQLHRIAEWP 240

Query: 241 KEKHTMEIEMRAQVVKQLQDIPELRSQYRTKLKQILFRSLEAIEGFLSIPTELKLEYCNI 283
             +     + R ++V+ L+ IPEL    R +L +IL R+++ ++ FL +P  +K  YC++
Sbjct: 241 ILQRQDATQTRQEIVRHLEAIPELTLMDRCRLMRILMRNVDDMKAFLEVPDHMKYPYCSL 300

[Close]

BLAST of Pay0013430 vs. NCBI nr
Match: KAA0038122.1 (retrotransposon protein [Cucumis melo var. makuwa] >KAA0047362.1 retrotransposon protein [Cucumis melo var. makuwa] >KAA0055248.1 retrotransposon protein [Cucumis melo var. makuwa] >TYJ97185.1 retrotransposon protein [Cucumis melo var. makuwa] >TYK00369.1 retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 317.8 bits (813), Expect = 9.6e-83
Identity = 156/309 (50.49%), Postives = 214/309 (69.26%), Query Frame = 0


Query: 1   MASLSRAPKHTWTEKEEAKLVECLVELVSSGGWRSDNGTFRPGYL----------LPGTN 60
           M S SR PKHTWT++EEA LVECLVELV++GGWRSDNGTFRPGYL          +PG+N
Sbjct: 1   MTSSSRLPKHTWTKEEEAGLVECLVELVNAGGWRSDNGTFRPGYLNQLARMMAFKIPGSN 60

Query: 61  IQASPTIDCRVKSLKKTYHAIAEMRGPSCSGFGWNEEFQCIIVERDLFDSWVKSHPATKG 120
           I AS TID R+K +K+ +HA+AEMRGP+CSGFGWN+E +CI+ E+++FD W  SHPA KG
Sbjct: 61  IHAS-TIDSRIKLMKRMFHALAEMRGPNCSGFGWNDEKKCIVAEKEVFDDW--SHPAAKG 120

Query: 121 LLHKSFPYYDDLTYVFGKDRATGARSETFVDVGSNVPNMFN----DTIPLGDSHDEDIPT 180
           LL+KSF +YD+L+YVFGKDRATG R+E+F D+GSN P  ++    D +P     D D P 
Sbjct: 121 LLNKSFVHYDELSYVFGKDRATGGRAESFADIGSNDPPGYDAGAADAMP-----DTDFPP 180

Query: 181 MYSQGVHISPDEMFGIRAGQASERRNCSSGK-------------VIRSVMEFGNEQLKAI 240
           MYS G+++SPD++   R  + SERRN SSG              ++R+ +E+GNEQL  I
Sbjct: 181 MYSPGLNMSPDDLMETRTARVSERRNVSSGSKRKRPGHATDSGDIVRTAIEYGNEQLHRI 240

Query: 241 ADWPKEKHTMEIEMRAQVVKQLQDIPELRSQYRTKLKQILFRSLEAIEGFLSIPTELKLE 283
           A+WP  +     + R ++V+ L+ IPEL    R +L +IL R+++ ++ FL +P  +K  
Sbjct: 241 AEWPILQRQDATQTRQEIVRHLEAIPELTLMDRCRLMRILMRNVDDMKAFLEVPDHMKYP 300

[Close]

BLAST of Pay0013430 vs. TAIR 10
Match: AT5G27260.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G29880.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). )

HSP 1 Score: 66.2 bits (160), Expect = 4.7e-11
Identity = 64/296 (21.62%), Postives = 128/296 (43.24%), Query Frame = 0


Query: 12  WTEKEEAKLVECLVELVSSGGWRSDNGTFR----PGYLLPGTNIQASPTID-----CRVK 71
           W+ +E   LV+ LVE +++  WR  NGT          +P  N +   + +      R+K
Sbjct: 17  WSPEETKLLVQLLVEGINN-NWRDSNGTISKLTVETKFMPEINKEFCRSKNYNHYLSRMK 76

Query: 72  SLKKTYHAIAEMRGPSCSGFGWNEEFQCIIVERDLFDSWVKSHPATKGLLHKSFPYYDDL 131
            LK  Y +  +++  S SGFGW+   +      +++  ++K+HP  K L + +F ++D+L
Sbjct: 77  YLKIQYQSCLDLQRFS-SGFGWDPLTKRFTASDEVWSDYLKAHPNNKQLRYDTFEFFDEL 136

Query: 132 TYVFGKDRATGARSETFVD--------VGSNVPNMFNDTIPLGDSHDEDIPTMYSQGVHI 191
             +FG+  ATG  +    D         G N    + D     + ++ D  T +    H 
Sbjct: 137 QIIFGEGVATGKNAIGLCDSTDGLTYRAGENPRKEYVD--DFDNVYEYDTTTHHESSEHY 196

Query: 192 SPDEMFGIRAG-----QASERRNCSSGKVIRSVMEFGNEQLKAIADWPKEKHTMEIEMRA 251
           +P    G         +   R   S+ +   S M   + ++  I    +E+   E+  + 
Sbjct: 197 APFMSHGTSESPKLPPRKRTRSERSTSQKEESPMMVVSSKILDIIQQREERQQNEVAQKK 256

Query: 252 ----QVVKQLQDIPE-LRSQYRTKLKQILFRSLEAIEGFLSIPTELKLEYCNILLQ 281
                 +K++ D+ E +R +  TK+  +  + +     F+S+  E +L +   +++
Sbjct: 257 NNVWDAIKEISDLDECIRYKALTKIYHLGIQDV-----FVSMSVEERLGWIQTIME 303

[Close]

BLAST of Pay0013430 vs. TAIR 10
Match: AT2G24960.2 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 12 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G02210.2); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 55.8 bits (133), Expect = 6.4e-08
Identity = 30/132 (22.73%), Postives = 61/132 (46.21%), Query Frame = 0


Query: 12  WTEKEEAKLVECLVELVSSG----------GWRSDNGTFRPGYLLPGTNIQASPTIDCRV 71
           WT   +  L++ LVE V++G           W      F   +     +      +  R 
Sbjct: 327 WTPPMDYHLIDLLVEQVNNGNRVGQTFITSAWNEMVTAFNAKF----GSQHNKDVLKNRY 386

Query: 72  KSLKKTYHAIAEMRGPSCSGFGWNEEFQCIIVERDLFDSWVKSHPATKGLLHKSFPYYDD 131
           K L++ Y+ I  +     +GF W+     +I + D++++++++HP  +    K+ P Y +
Sbjct: 387 KHLRRLYNDIKFLL--EQNGFSWDARRDMVIADDDIWNTYIQAHPEARSYRVKTIPSYPN 446

Query: 132 LTYVFGKDRATG 134
           L ++FGK+ + G
Sbjct: 447 LCFIFGKETSDG 452

[Close]

BLAST of Pay0013430 vs. TAIR 10
Match: AT4G02210.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G24960.2); Has 791 Blast hits to 465 proteins in 19 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 17; Plants - 748; Viruses - 0; Other Eukaryotes - 26 (source: NCBI BLink). )

HSP 1 Score: 50.8 bits (120), Expect = 2.0e-06
Identity = 30/141 (21.28%), Postives = 62/141 (43.97%), Query Frame = 0


Query: 12  WTEKEEAKLVECLVELVSSGGWRSDNGTFRPGYLLPGTNIQA-------SPTIDCRVKSL 71
           WT + +   +E +VE V  G    D+   +  +     +  A          +  R K+L
Sbjct: 14  WTPEMDQYFIELMVEQVRKGNRFEDHLFSKRAWKFMSCSFTAKFKFLYGKDVLKNRHKTL 73

Query: 72  KKTYHAIAEMRGPSCSGFGWNEEFQCIIVERDLFDSWVKSHPATKGLLHKSFPYYDDLTY 131
           +  + ++  +      GF W++  Q ++ +  ++D ++K HP ++    KS P Y DL  
Sbjct: 74  RNLFKSVNNLLIE--DGFSWDDTRQMVVADNCVWDEYLKIHPDSRSFRIKSIPCYKDLCL 133

Query: 132 VFGKDRATGARSETFVDVGSN 146
           V+  D  +  ++E  +  G +
Sbjct: 134 VY-SDGMSEHKAEESISEGES 151

[Close]

BLAST of Pay0013430 vs. TAIR 10
Match: AT4G02210.2 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G24960.2). )

HSP 1 Score: 50.8 bits (120), Expect = 2.0e-06
Identity = 30/141 (21.28%), Postives = 62/141 (43.97%), Query Frame = 0


Query: 12  WTEKEEAKLVECLVELVSSGGWRSDNGTFRPGYLLPGTNIQA-------SPTIDCRVKSL 71
           WT + +   +E +VE V  G    D+   +  +     +  A          +  R K+L
Sbjct: 14  WTPEMDQYFIELMVEQVRKGNRFEDHLFSKRAWKFMSCSFTAKFKFLYGKDVLKNRHKTL 73

Query: 72  KKTYHAIAEMRGPSCSGFGWNEEFQCIIVERDLFDSWVKSHPATKGLLHKSFPYYDDLTY 131
           +  + ++  +      GF W++  Q ++ +  ++D ++K HP ++    KS P Y DL  
Sbjct: 74  RNLFKSVNNLLIE--DGFSWDDTRQMVVADNCVWDEYLKIHPDSRSFRIKSIPCYKDLCL 133

Query: 132 VFGKDRATGARSETFVDVGSN 146
           V+  D  +  ++E  +  G +
Sbjct: 134 VY-SDGMSEHKAEESISEGES 151

The following BLAST results are available for this feature:

BLAST of Pay0013430 vs.


Match Name	E-value	Identity	Description

BLAST of Pay0013430 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7U0H7	8.9e-143	83.99	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A1S3B4L3	8.9e-143	83.99	uncharacterized protein LOC103485953 OS=Cucumis melo OX=3656 GN=LOC103485953 PE=...	[more]
A0A5D3DG22	1.1e-103	89.30	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5D3BZU3	4.1e-95	62.75	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5D3DPR5	9.4e-84	50.82	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]

BLAST of Pay0013430 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008441954.1	1.8e-142	83.99	PREDICTED: uncharacterized protein LOC103485953 [Cucumis melo] >KAA0047736.1 ret...	[more]
KAA0062747.1	2.2e-103	89.30	retrotransposon protein [Cucumis melo var. makuwa] >TYK22546.1 retrotransposon p...	[more]
KAA0031678.1	8.4e-95	62.75	retrotransposon protein [Cucumis melo var. makuwa] >TYK04432.1 retrotransposon p...	[more]
KAA0035621.1	1.9e-83	50.82	retrotransposon protein [Cucumis melo var. makuwa] >KAA0041647.1 retrotransposon...	[more]
KAA0038122.1	9.6e-83	50.49	retrotransposon protein [Cucumis melo var. makuwa] >KAA0047362.1 retrotransposon...	[more]

BLAST of Pay0013430 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G27260.1	4.7e-11	21.62	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]
AT2G24960.2	6.4e-08	22.73	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]
AT4G02210.1	2.0e-06	21.28	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]
AT4G02210.2	2.0e-06	21.28	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (Payzawat) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR46250:SF3	MYB/SANT-LIKE DNA-BINDING DOMAIN PROTEIN	coord: 5..275
None	No IPR available	PANTHER	PTHR46250	MYB/SANT-LIKE DNA-BINDING DOMAIN PROTEIN-RELATED	coord: 5..275

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Pay0013430.1	Pay0013430.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0046872	metal ion binding