Pay0013374 (gene) Melon (Payzawat) v1

Overview
NamePay0013374
Typegene
OrganismCucumis melo L. var. inodorus cv. Payzawat (Melon (Payzawat) v1)
DescriptionReverse transcriptase
Locationchr05: 15238071 .. 15238763 (+)
RNA-Seq ExpressionPay0013374
SyntenyPay0013374
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGTGGATACTGGAGAGGTTGATGTATCCCTGTCATTAGAACCAGTGGTAAGGGACTATCCGGATGTTTTTTCTGAAGAGCTTCCAGGGTTACCTCCTCATAGAGAGATTGAGTTTGCCATAGAGCTGGAGCCAGGTACGATTCCTATATCCAGAGCCCCATACAGAATGGCCCCAGCAGAATTGAAGGAACTGAAAGTGCAGCTACAGGAGTTGCTTGATAAAGGCTTCATTCGACCGAGTGTGTCACCTTTTGGTGCGGTAGTTTTATTTGTTAAGAAGAAGGATGGATCGATGCGCCTATGCATTGACTATAGGGAGTTGAATAAGGTAACCGTTAAGAACAGATATCCCTTGCCCAAGATCGACGATCTATTTGACCAGTTACAGGGAGCTACAGTGTTCTCTAAGATTGATCTTCGATCAGGATATCATCAGCTGAGGATTAAGGATGGTGATGTACCGAAGACAGCCTTTCGTTCCAGATACGGACACTATGAGTTTATTGTGATGTCTTTTGGTTTGACGAATGCTCCAGCAGTGTTTATGGACTTGATGAACAAAGTGTTTAGGGAGTTCCTAGACACTTTTGTGATCGTGTTTATTGATGATATTTTGATATATTCCAAGACAGAGGCCGAGCATGAGGAGCATTTACGTATGGTTCTGCAAACCCTTCGGGATAATAAATGA

mRNA sequence

ATGGTGGATACTGGAGAGGTTGATGTATCCCTGTCATTAGAACCAGTGGTAAGGGACTATCCGGATGTTTTTTCTGAAGAGCTTCCAGGGTTACCTCCTCATAGAGAGATTGAGTTTGCCATAGAGCTGGAGCCAGGTACGATTCCTATATCCAGAGCCCCATACAGAATGGCCCCAGCAGAATTGAAGGAACTGAAAGTGCAGCTACAGGAGTTGCTTGATAAAGGCTTCATTCGACCGAGTGTGTCACCTTTTGGTGCGGTAGTTTTATTTGTTAAGAAGAAGGATGGATCGATGCGCCTATGCATTGACTATAGGGAGTTGAATAAGGTAACCGTTAAGAACAGATATCCCTTGCCCAAGATCGACGATCTATTTGACCAGTTACAGGGAGCTACAGTGTTCTCTAAGATTGATCTTCGATCAGGATATCATCAGCTGAGGATTAAGGATGGTGATGTACCGAAGACAGCCTTTCGTTCCAGATACGGACACTATGAGTTTATTGTGATGTCTTTTGGTTTGACGAATGCTCCAGCAGTGTTTATGGACTTGATGAACAAAGTGTTTAGGGAGTTCCTAGACACTTTTGTGATCGTGTTTATTGATGATATTTTGATATATTCCAAGACAGAGGCCGAGCATGAGGAGCATTTACGTATGGTTCTGCAAACCCTTCGGGATAATAAATGA

Coding sequence (CDS)

ATGGTGGATACTGGAGAGGTTGATGTATCCCTGTCATTAGAACCAGTGGTAAGGGACTATCCGGATGTTTTTTCTGAAGAGCTTCCAGGGTTACCTCCTCATAGAGAGATTGAGTTTGCCATAGAGCTGGAGCCAGGTACGATTCCTATATCCAGAGCCCCATACAGAATGGCCCCAGCAGAATTGAAGGAACTGAAAGTGCAGCTACAGGAGTTGCTTGATAAAGGCTTCATTCGACCGAGTGTGTCACCTTTTGGTGCGGTAGTTTTATTTGTTAAGAAGAAGGATGGATCGATGCGCCTATGCATTGACTATAGGGAGTTGAATAAGGTAACCGTTAAGAACAGATATCCCTTGCCCAAGATCGACGATCTATTTGACCAGTTACAGGGAGCTACAGTGTTCTCTAAGATTGATCTTCGATCAGGATATCATCAGCTGAGGATTAAGGATGGTGATGTACCGAAGACAGCCTTTCGTTCCAGATACGGACACTATGAGTTTATTGTGATGTCTTTTGGTTTGACGAATGCTCCAGCAGTGTTTATGGACTTGATGAACAAAGTGTTTAGGGAGTTCCTAGACACTTTTGTGATCGTGTTTATTGATGATATTTTGATATATTCCAAGACAGAGGCCGAGCATGAGGAGCATTTACGTATGGTTCTGCAAACCCTTCGGGATAATAAATGA

Protein sequence

MVDTGEVDVSLSLEPVVRDYPDVFSEELPGLPPHREIEFAIELEPGTIPISRAPYRMAPAELKELKVQLQELLDKGFIRPSVSPFGAVVLFVKKKDGSMRLCIDYRELNKVTVKNRYPLPKIDDLFDQLQGATVFSKIDLRSGYHQLRIKDGDVPKTAFRSRYGHYEFIVMSFGLTNAPAVFMDLMNKVFREFLDTFVIVFIDDILIYSKTEAEHEEHLRMVLQTLRDNK
Homology
BLAST of Pay0013374 vs. ExPASy Swiss-Prot
Match: Q99315 (Transposon Ty3-G Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=TY3B-G PE=1 SV=3)

HSP 1 Score: 168.3 bits (425), Expect = 1.0e-40
Identity = 88/212 (41.51%), Postives = 131/212 (61.79%), Query Frame = 0

Query: 20  YPDVFSEELPGLPP---HREIEFAIELEPGTIPISRAPYRMAPAELKELKVQLQELLDKG 79
           Y ++   +LP  P    +  ++  IE++PG       PY +     +E+   +Q+LLD  
Sbjct: 564 YREIIRNDLPPRPADINNIPVKHDIEIKPGARLPRLQPYHVTEKNEQEINKIVQKLLDNK 623

Query: 80  FIRPSVSPFGAVVLFVKKKDGSMRLCIDYRELNKVTVKNRYPLPKIDDLFDQLQGATVFS 139
           FI PS SP  + V+ V KKDG+ RLC+DYR LNK T+ + +PLP+ID+L  ++  A +F+
Sbjct: 624 FIVPSKSPCSSPVVLVPKKDGTFRLCVDYRTLNKATISDPFPLPRIDNLLSRIGNAQIFT 683

Query: 140 KIDLRSGYHQLRIKDGDVPKTAFRSRYGHYEFIVMSFGLTNAPAVFMDLMNKVFREFLDT 199
            +DL SGYHQ+ ++  D  KTAF +  G YE+ VM FGL NAP+ F   M   FR+    
Sbjct: 684 TLDLHSGYHQIPMEPKDRYKTAFVTPSGKYEYTVMPFGLVNAPSTFARYMADTFRDL--R 743

Query: 200 FVIVFIDDILIYSKTEAEHEEHLRMVLQTLRD 229
           FV V++DDILI+S++  EH +HL  VL+ L++
Sbjct: 744 FVNVYLDDILIFSESPEEHWKHLDTVLERLKN 773

BLAST of Pay0013374 vs. ExPASy Swiss-Prot
Match: Q7LHG5 (Transposon Ty3-I Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=TY3B-I PE=1 SV=2)

HSP 1 Score: 168.3 bits (425), Expect = 1.0e-40
Identity = 88/212 (41.51%), Postives = 131/212 (61.79%), Query Frame = 0

Query: 20  YPDVFSEELPGLPP---HREIEFAIELEPGTIPISRAPYRMAPAELKELKVQLQELLDKG 79
           Y ++   +LP  P    +  ++  IE++PG       PY +     +E+   +Q+LLD  
Sbjct: 590 YREIIRNDLPPRPADINNIPVKHDIEIKPGARLPRLQPYHVTEKNEQEINKIVQKLLDNK 649

Query: 80  FIRPSVSPFGAVVLFVKKKDGSMRLCIDYRELNKVTVKNRYPLPKIDDLFDQLQGATVFS 139
           FI PS SP  + V+ V KKDG+ RLC+DYR LNK T+ + +PLP+ID+L  ++  A +F+
Sbjct: 650 FIVPSKSPCSSPVVLVPKKDGTFRLCVDYRTLNKATISDPFPLPRIDNLLSRIGNAQIFT 709

Query: 140 KIDLRSGYHQLRIKDGDVPKTAFRSRYGHYEFIVMSFGLTNAPAVFMDLMNKVFREFLDT 199
            +DL SGYHQ+ ++  D  KTAF +  G YE+ VM FGL NAP+ F   M   FR+    
Sbjct: 710 TLDLHSGYHQIPMEPKDRYKTAFVTPSGKYEYTVMPFGLVNAPSTFARYMADTFRDL--R 769

Query: 200 FVIVFIDDILIYSKTEAEHEEHLRMVLQTLRD 229
           FV V++DDILI+S++  EH +HL  VL+ L++
Sbjct: 770 FVNVYLDDILIFSESPEEHWKHLDTVLERLKN 799

BLAST of Pay0013374 vs. ExPASy Swiss-Prot
Match: P0CT41 (Transposon Tf2-12 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=Tf2-12 PE=3 SV=1)

HSP 1 Score: 162.2 bits (409), Expect = 7.2e-39
Identity = 80/220 (36.36%), Postives = 139/220 (63.18%), Query Frame = 0

Query: 13  LEPVVRDYPDVF----SEELPGLPPHREIEFAIELEPGTIPISRAPYRMAPAELKELKVQ 72
           L  + +++ D+     +E+LP   P + +EF +EL      +    Y + P +++ +  +
Sbjct: 374 LPDIYKEFKDITAETNTEKLP--KPIKGLEFEVELTQENYRLPIRNYPLPPGKMQAMNDE 433

Query: 73  LQELLDKGFIRPSVSPFGAVVLFVKKKDGSMRLCIDYRELNKVTVKNRYPLPKIDDLFDQ 132
           + + L  G IR S +     V+FV KK+G++R+ +DY+ LNK    N YPLP I+ L  +
Sbjct: 434 INQGLKSGIIRESKAINACPVMFVPKKEGTLRMVVDYKPLNKYVKPNIYPLPLIEQLLAK 493

Query: 133 LQGATVFSKIDLRSGYHQLRIKDGDVPKTAFRSRYGHYEFIVMSFGLTNAPAVFMDLMNK 192
           +QG+T+F+K+DL+S YH +R++ GD  K AFR   G +E++VM +G++ APA F   +N 
Sbjct: 494 IQGSTIFTKLDLKSAYHLIRVRKGDEHKLAFRCPRGVFEYLVMPYGISTAPAHFQYFINT 553

Query: 193 VFREFLDTFVIVFIDDILIYSKTEAEHEEHLRMVLQTLRD 229
           +  E  ++ V+ ++DDILI+SK+E+EH +H++ VLQ L++
Sbjct: 554 ILGEAKESHVVCYMDDILIHSKSESEHVKHVKDVLQKLKN 591

BLAST of Pay0013374 vs. ExPASy Swiss-Prot
Match: P0CT34 (Transposon Tf2-1 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=Tf2-1 PE=3 SV=1)

HSP 1 Score: 162.2 bits (409), Expect = 7.2e-39
Identity = 80/220 (36.36%), Postives = 139/220 (63.18%), Query Frame = 0

Query: 13  LEPVVRDYPDVF----SEELPGLPPHREIEFAIELEPGTIPISRAPYRMAPAELKELKVQ 72
           L  + +++ D+     +E+LP   P + +EF +EL      +    Y + P +++ +  +
Sbjct: 374 LPDIYKEFKDITAETNTEKLP--KPIKGLEFEVELTQENYRLPIRNYPLPPGKMQAMNDE 433

Query: 73  LQELLDKGFIRPSVSPFGAVVLFVKKKDGSMRLCIDYRELNKVTVKNRYPLPKIDDLFDQ 132
           + + L  G IR S +     V+FV KK+G++R+ +DY+ LNK    N YPLP I+ L  +
Sbjct: 434 INQGLKSGIIRESKAINACPVMFVPKKEGTLRMVVDYKPLNKYVKPNIYPLPLIEQLLAK 493

Query: 133 LQGATVFSKIDLRSGYHQLRIKDGDVPKTAFRSRYGHYEFIVMSFGLTNAPAVFMDLMNK 192
           +QG+T+F+K+DL+S YH +R++ GD  K AFR   G +E++VM +G++ APA F   +N 
Sbjct: 494 IQGSTIFTKLDLKSAYHLIRVRKGDEHKLAFRCPRGVFEYLVMPYGISTAPAHFQYFINT 553

Query: 193 VFREFLDTFVIVFIDDILIYSKTEAEHEEHLRMVLQTLRD 229
           +  E  ++ V+ ++DDILI+SK+E+EH +H++ VLQ L++
Sbjct: 554 ILGEAKESHVVCYMDDILIHSKSESEHVKHVKDVLQKLKN 591

BLAST of Pay0013374 vs. ExPASy Swiss-Prot
Match: P0CT35 (Transposon Tf2-2 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=Tf2-2 PE=3 SV=1)

HSP 1 Score: 162.2 bits (409), Expect = 7.2e-39
Identity = 80/220 (36.36%), Postives = 139/220 (63.18%), Query Frame = 0

Query: 13  LEPVVRDYPDVF----SEELPGLPPHREIEFAIELEPGTIPISRAPYRMAPAELKELKVQ 72
           L  + +++ D+     +E+LP   P + +EF +EL      +    Y + P +++ +  +
Sbjct: 374 LPDIYKEFKDITAETNTEKLP--KPIKGLEFEVELTQENYRLPIRNYPLPPGKMQAMNDE 433

Query: 73  LQELLDKGFIRPSVSPFGAVVLFVKKKDGSMRLCIDYRELNKVTVKNRYPLPKIDDLFDQ 132
           + + L  G IR S +     V+FV KK+G++R+ +DY+ LNK    N YPLP I+ L  +
Sbjct: 434 INQGLKSGIIRESKAINACPVMFVPKKEGTLRMVVDYKPLNKYVKPNIYPLPLIEQLLAK 493

Query: 133 LQGATVFSKIDLRSGYHQLRIKDGDVPKTAFRSRYGHYEFIVMSFGLTNAPAVFMDLMNK 192
           +QG+T+F+K+DL+S YH +R++ GD  K AFR   G +E++VM +G++ APA F   +N 
Sbjct: 494 IQGSTIFTKLDLKSAYHLIRVRKGDEHKLAFRCPRGVFEYLVMPYGISTAPAHFQYFINT 553

Query: 193 VFREFLDTFVIVFIDDILIYSKTEAEHEEHLRMVLQTLRD 229
           +  E  ++ V+ ++DDILI+SK+E+EH +H++ VLQ L++
Sbjct: 554 ILGEAKESHVVCYMDDILIHSKSESEHVKHVKDVLQKLKN 591

BLAST of Pay0013374 vs. ExPASy TrEMBL
Match: A0A5A7TV57 (Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold498G00240 PE=4 SV=1)

HSP 1 Score: 443.4 bits (1139), Expect = 6.0e-121
Identity = 219/230 (95.22%), Postives = 226/230 (98.26%), Query Frame = 0

Query: 1    MVDTGEVDVSLSLEPVVRDYPDVFSEELPGLPPHREIEFAIELEPGTIPISRAPYRMAPA 60
            +VDT EVDVSLS EPVVRDYPDVF EELPGLPPHRE+EFAIELEPGT+PISRAPYRMAPA
Sbjct: 1007 VVDTREVDVSLSSEPVVRDYPDVFPEELPGLPPHREVEFAIELEPGTVPISRAPYRMAPA 1066

Query: 61   ELKELKVQLQELLDKGFIRPSVSPFGAVVLFVKKKDGSMRLCIDYRELNKVTVKNRYPLP 120
            ELKELKVQLQELLDKGFIRPSVSP+GA VLFVKKKDGSMRLCIDYRELNKVTVKNRYPLP
Sbjct: 1067 ELKELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKDGSMRLCIDYRELNKVTVKNRYPLP 1126

Query: 121  KIDDLFDQLQGATVFSKIDLRSGYHQLRIKDGDVPKTAFRSRYGHYEFIVMSFGLTNAPA 180
            +IDDLFDQLQGATVFSKIDLRSGYHQLRIKDGDVPKTAFRSRYGHYEFIVMSFGLTNAPA
Sbjct: 1127 RIDDLFDQLQGATVFSKIDLRSGYHQLRIKDGDVPKTAFRSRYGHYEFIVMSFGLTNAPA 1186

Query: 181  VFMDLMNKVFREFLDTFVIVFIDDILIYSKTEAEHEEHLRMVLQTLRDNK 231
            VFMDLMN+VFREFLDTFVIVFIDDILIYSKTEAEHEEHLR+VLQTLRDNK
Sbjct: 1187 VFMDLMNRVFREFLDTFVIVFIDDILIYSKTEAEHEEHLRIVLQTLRDNK 1236

BLAST of Pay0013374 vs. ExPASy TrEMBL
Match: A0A5A7SQP5 (Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold219G002220 PE=4 SV=1)

HSP 1 Score: 443.0 bits (1138), Expect = 7.8e-121
Identity = 218/230 (94.78%), Postives = 226/230 (98.26%), Query Frame = 0

Query: 1   MVDTGEVDVSLSLEPVVRDYPDVFSEELPGLPPHREIEFAIELEPGTIPISRAPYRMAPA 60
           +VDT EVDVSLS EPVVRDYPDVF EELPGLPPHRE+EFAIELEPGT+PISRAPYRMAPA
Sbjct: 506 VVDTREVDVSLSSEPVVRDYPDVFPEELPGLPPHREVEFAIELEPGTVPISRAPYRMAPA 565

Query: 61  ELKELKVQLQELLDKGFIRPSVSPFGAVVLFVKKKDGSMRLCIDYRELNKVTVKNRYPLP 120
           ELKELKVQLQELLDKGFIRPSVSP+GA +LFVKKKDGSMRLCIDYRELNKVTVKNRYPLP
Sbjct: 566 ELKELKVQLQELLDKGFIRPSVSPWGAPILFVKKKDGSMRLCIDYRELNKVTVKNRYPLP 625

Query: 121 KIDDLFDQLQGATVFSKIDLRSGYHQLRIKDGDVPKTAFRSRYGHYEFIVMSFGLTNAPA 180
           +IDDLFDQLQGATVFSKIDLRSGYHQLRIKDGDVPKTAFRSRYGHYEFIVMSFGLTNAPA
Sbjct: 626 RIDDLFDQLQGATVFSKIDLRSGYHQLRIKDGDVPKTAFRSRYGHYEFIVMSFGLTNAPA 685

Query: 181 VFMDLMNKVFREFLDTFVIVFIDDILIYSKTEAEHEEHLRMVLQTLRDNK 231
           VFMDLMN+VFREFLDTFVIVFIDDILIYSKTEAEHEEHLR+VLQTLRDNK
Sbjct: 686 VFMDLMNRVFREFLDTFVIVFIDDILIYSKTEAEHEEHLRIVLQTLRDNK 735

BLAST of Pay0013374 vs. ExPASy TrEMBL
Match: A0A5A7TW65 (DNA/RNA polymerases superfamily protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold83G00760 PE=4 SV=1)

HSP 1 Score: 443.0 bits (1138), Expect = 7.8e-121
Identity = 219/230 (95.22%), Postives = 225/230 (97.83%), Query Frame = 0

Query: 1   MVDTGEVDVSLSLEPVVRDYPDVFSEELPGLPPHREIEFAIELEPGTIPISRAPYRMAPA 60
           +VDT EVDVSLS EPVVRDYPDVF EELPGLPPHRE+EFAIELEPGT+PISRAPYRMAPA
Sbjct: 663 VVDTREVDVSLSSEPVVRDYPDVFPEELPGLPPHREVEFAIELEPGTVPISRAPYRMAPA 722

Query: 61  ELKELKVQLQELLDKGFIRPSVSPFGAVVLFVKKKDGSMRLCIDYRELNKVTVKNRYPLP 120
           ELKELKVQLQELLDKGFIRPSVSP+GA VLFVKKKDGSMRLCIDYRELNKVTVKNRYPLP
Sbjct: 723 ELKELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKDGSMRLCIDYRELNKVTVKNRYPLP 782

Query: 121 KIDDLFDQLQGATVFSKIDLRSGYHQLRIKDGDVPKTAFRSRYGHYEFIVMSFGLTNAPA 180
           +IDDLFDQLQGATVFSKIDLRSGYHQLRIKDGDVPKTAFRSRYGHYEFIVMSFGLTNAPA
Sbjct: 783 RIDDLFDQLQGATVFSKIDLRSGYHQLRIKDGDVPKTAFRSRYGHYEFIVMSFGLTNAPA 842

Query: 181 VFMDLMNKVFREFLDTFVIVFIDDILIYSKTEAEHEEHLRMVLQTLRDNK 231
           VFMDLMN+VFREFLDTFVIVFIDDILIYSK EAEHEEHLRMVLQTLRDNK
Sbjct: 843 VFMDLMNRVFREFLDTFVIVFIDDILIYSKAEAEHEEHLRMVLQTLRDNK 892

BLAST of Pay0013374 vs. ExPASy TrEMBL
Match: A0A5A7T190 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold379G001700 PE=4 SV=1)

HSP 1 Score: 442.6 bits (1137), Expect = 1.0e-120
Identity = 219/230 (95.22%), Postives = 225/230 (97.83%), Query Frame = 0

Query: 1   MVDTGEVDVSLSLEPVVRDYPDVFSEELPGLPPHREIEFAIELEPGTIPISRAPYRMAPA 60
           +VDT EVDVSLSLEPVVRDYPDVF EELPGLPPHRE+EFAIELEPGT+PISRAPYRMAPA
Sbjct: 558 VVDTREVDVSLSLEPVVRDYPDVFPEELPGLPPHREVEFAIELEPGTVPISRAPYRMAPA 617

Query: 61  ELKELKVQLQELLDKGFIRPSVSPFGAVVLFVKKKDGSMRLCIDYRELNKVTVKNRYPLP 120
           ELKELKVQLQELLDKGFIRPSVSP+GA VLFVKKKDGSMRLCIDYRELNKVTVKNRYPLP
Sbjct: 618 ELKELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKDGSMRLCIDYRELNKVTVKNRYPLP 677

Query: 121 KIDDLFDQLQGATVFSKIDLRSGYHQLRIKDGDVPKTAFRSRYGHYEFIVMSFGLTNAPA 180
           +IDDLFDQLQGATVFSKIDLRSGYHQLRIKD DVPKTAFRSRYGHYEFIVMSFGLTNAPA
Sbjct: 678 RIDDLFDQLQGATVFSKIDLRSGYHQLRIKDEDVPKTAFRSRYGHYEFIVMSFGLTNAPA 737

Query: 181 VFMDLMNKVFREFLDTFVIVFIDDILIYSKTEAEHEEHLRMVLQTLRDNK 231
           VFMDLMN+VFREFLDTFVIVFIDDILIYSKTE EHEEHLRMVLQTLRDNK
Sbjct: 738 VFMDLMNRVFREFLDTFVIVFIDDILIYSKTEVEHEEHLRMVLQTLRDNK 787

BLAST of Pay0013374 vs. ExPASy TrEMBL
Match: A0A5A7SQU8 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold134G00040 PE=4 SV=1)

HSP 1 Score: 442.2 bits (1136), Expect = 1.3e-120
Identity = 218/230 (94.78%), Postives = 226/230 (98.26%), Query Frame = 0

Query: 1    MVDTGEVDVSLSLEPVVRDYPDVFSEELPGLPPHREIEFAIELEPGTIPISRAPYRMAPA 60
            +VDT EVDVSLS EPVVRDYPDVF EELPGLPPHRE+EFAIELEPGT+PISRAPYRMAPA
Sbjct: 896  VVDTREVDVSLSSEPVVRDYPDVFPEELPGLPPHREVEFAIELEPGTVPISRAPYRMAPA 955

Query: 61   ELKELKVQLQELLDKGFIRPSVSPFGAVVLFVKKKDGSMRLCIDYRELNKVTVKNRYPLP 120
            ELKELKVQLQELLDKGFIRPS+SP+GA VLFVKKKDGSMRLCIDYRELNKVTVKNRYPLP
Sbjct: 956  ELKELKVQLQELLDKGFIRPSMSPWGAPVLFVKKKDGSMRLCIDYRELNKVTVKNRYPLP 1015

Query: 121  KIDDLFDQLQGATVFSKIDLRSGYHQLRIKDGDVPKTAFRSRYGHYEFIVMSFGLTNAPA 180
            +IDDLFDQLQGATVFSKIDLRSGYHQLRIKDGDVPKTAFRSRYGHYEFIVMSFGLTNAPA
Sbjct: 1016 RIDDLFDQLQGATVFSKIDLRSGYHQLRIKDGDVPKTAFRSRYGHYEFIVMSFGLTNAPA 1075

Query: 181  VFMDLMNKVFREFLDTFVIVFIDDILIYSKTEAEHEEHLRMVLQTLRDNK 231
            VFMDLMN+VFREFLDTFVIVFIDDILIYSKTEAEHEEHLR+VLQTLRDNK
Sbjct: 1076 VFMDLMNRVFREFLDTFVIVFIDDILIYSKTEAEHEEHLRIVLQTLRDNK 1125

BLAST of Pay0013374 vs. NCBI nr
Match: KAA0047433.1 (ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 443.4 bits (1139), Expect = 1.2e-120
Identity = 219/230 (95.22%), Postives = 226/230 (98.26%), Query Frame = 0

Query: 1    MVDTGEVDVSLSLEPVVRDYPDVFSEELPGLPPHREIEFAIELEPGTIPISRAPYRMAPA 60
            +VDT EVDVSLS EPVVRDYPDVF EELPGLPPHRE+EFAIELEPGT+PISRAPYRMAPA
Sbjct: 1007 VVDTREVDVSLSSEPVVRDYPDVFPEELPGLPPHREVEFAIELEPGTVPISRAPYRMAPA 1066

Query: 61   ELKELKVQLQELLDKGFIRPSVSPFGAVVLFVKKKDGSMRLCIDYRELNKVTVKNRYPLP 120
            ELKELKVQLQELLDKGFIRPSVSP+GA VLFVKKKDGSMRLCIDYRELNKVTVKNRYPLP
Sbjct: 1067 ELKELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKDGSMRLCIDYRELNKVTVKNRYPLP 1126

Query: 121  KIDDLFDQLQGATVFSKIDLRSGYHQLRIKDGDVPKTAFRSRYGHYEFIVMSFGLTNAPA 180
            +IDDLFDQLQGATVFSKIDLRSGYHQLRIKDGDVPKTAFRSRYGHYEFIVMSFGLTNAPA
Sbjct: 1127 RIDDLFDQLQGATVFSKIDLRSGYHQLRIKDGDVPKTAFRSRYGHYEFIVMSFGLTNAPA 1186

Query: 181  VFMDLMNKVFREFLDTFVIVFIDDILIYSKTEAEHEEHLRMVLQTLRDNK 231
            VFMDLMN+VFREFLDTFVIVFIDDILIYSKTEAEHEEHLR+VLQTLRDNK
Sbjct: 1187 VFMDLMNRVFREFLDTFVIVFIDDILIYSKTEAEHEEHLRIVLQTLRDNK 1236

BLAST of Pay0013374 vs. NCBI nr
Match: KAA0047194.1 (DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa])

HSP 1 Score: 443.0 bits (1138), Expect = 1.6e-120
Identity = 219/230 (95.22%), Postives = 225/230 (97.83%), Query Frame = 0

Query: 1   MVDTGEVDVSLSLEPVVRDYPDVFSEELPGLPPHREIEFAIELEPGTIPISRAPYRMAPA 60
           +VDT EVDVSLS EPVVRDYPDVF EELPGLPPHRE+EFAIELEPGT+PISRAPYRMAPA
Sbjct: 663 VVDTREVDVSLSSEPVVRDYPDVFPEELPGLPPHREVEFAIELEPGTVPISRAPYRMAPA 722

Query: 61  ELKELKVQLQELLDKGFIRPSVSPFGAVVLFVKKKDGSMRLCIDYRELNKVTVKNRYPLP 120
           ELKELKVQLQELLDKGFIRPSVSP+GA VLFVKKKDGSMRLCIDYRELNKVTVKNRYPLP
Sbjct: 723 ELKELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKDGSMRLCIDYRELNKVTVKNRYPLP 782

Query: 121 KIDDLFDQLQGATVFSKIDLRSGYHQLRIKDGDVPKTAFRSRYGHYEFIVMSFGLTNAPA 180
           +IDDLFDQLQGATVFSKIDLRSGYHQLRIKDGDVPKTAFRSRYGHYEFIVMSFGLTNAPA
Sbjct: 783 RIDDLFDQLQGATVFSKIDLRSGYHQLRIKDGDVPKTAFRSRYGHYEFIVMSFGLTNAPA 842

Query: 181 VFMDLMNKVFREFLDTFVIVFIDDILIYSKTEAEHEEHLRMVLQTLRDNK 231
           VFMDLMN+VFREFLDTFVIVFIDDILIYSK EAEHEEHLRMVLQTLRDNK
Sbjct: 843 VFMDLMNRVFREFLDTFVIVFIDDILIYSKAEAEHEEHLRMVLQTLRDNK 892

BLAST of Pay0013374 vs. NCBI nr
Match: KAA0032356.1 (ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 443.0 bits (1138), Expect = 1.6e-120
Identity = 218/230 (94.78%), Postives = 226/230 (98.26%), Query Frame = 0

Query: 1   MVDTGEVDVSLSLEPVVRDYPDVFSEELPGLPPHREIEFAIELEPGTIPISRAPYRMAPA 60
           +VDT EVDVSLS EPVVRDYPDVF EELPGLPPHRE+EFAIELEPGT+PISRAPYRMAPA
Sbjct: 506 VVDTREVDVSLSSEPVVRDYPDVFPEELPGLPPHREVEFAIELEPGTVPISRAPYRMAPA 565

Query: 61  ELKELKVQLQELLDKGFIRPSVSPFGAVVLFVKKKDGSMRLCIDYRELNKVTVKNRYPLP 120
           ELKELKVQLQELLDKGFIRPSVSP+GA +LFVKKKDGSMRLCIDYRELNKVTVKNRYPLP
Sbjct: 566 ELKELKVQLQELLDKGFIRPSVSPWGAPILFVKKKDGSMRLCIDYRELNKVTVKNRYPLP 625

Query: 121 KIDDLFDQLQGATVFSKIDLRSGYHQLRIKDGDVPKTAFRSRYGHYEFIVMSFGLTNAPA 180
           +IDDLFDQLQGATVFSKIDLRSGYHQLRIKDGDVPKTAFRSRYGHYEFIVMSFGLTNAPA
Sbjct: 626 RIDDLFDQLQGATVFSKIDLRSGYHQLRIKDGDVPKTAFRSRYGHYEFIVMSFGLTNAPA 685

Query: 181 VFMDLMNKVFREFLDTFVIVFIDDILIYSKTEAEHEEHLRMVLQTLRDNK 231
           VFMDLMN+VFREFLDTFVIVFIDDILIYSKTEAEHEEHLR+VLQTLRDNK
Sbjct: 686 VFMDLMNRVFREFLDTFVIVFIDDILIYSKTEAEHEEHLRIVLQTLRDNK 735

BLAST of Pay0013374 vs. NCBI nr
Match: KAA0037244.1 (reverse transcriptase [Cucumis melo var. makuwa])

HSP 1 Score: 442.6 bits (1137), Expect = 2.1e-120
Identity = 219/230 (95.22%), Postives = 225/230 (97.83%), Query Frame = 0

Query: 1   MVDTGEVDVSLSLEPVVRDYPDVFSEELPGLPPHREIEFAIELEPGTIPISRAPYRMAPA 60
           +VDT EVDVSLSLEPVVRDYPDVF EELPGLPPHRE+EFAIELEPGT+PISRAPYRMAPA
Sbjct: 558 VVDTREVDVSLSLEPVVRDYPDVFPEELPGLPPHREVEFAIELEPGTVPISRAPYRMAPA 617

Query: 61  ELKELKVQLQELLDKGFIRPSVSPFGAVVLFVKKKDGSMRLCIDYRELNKVTVKNRYPLP 120
           ELKELKVQLQELLDKGFIRPSVSP+GA VLFVKKKDGSMRLCIDYRELNKVTVKNRYPLP
Sbjct: 618 ELKELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKDGSMRLCIDYRELNKVTVKNRYPLP 677

Query: 121 KIDDLFDQLQGATVFSKIDLRSGYHQLRIKDGDVPKTAFRSRYGHYEFIVMSFGLTNAPA 180
           +IDDLFDQLQGATVFSKIDLRSGYHQLRIKD DVPKTAFRSRYGHYEFIVMSFGLTNAPA
Sbjct: 678 RIDDLFDQLQGATVFSKIDLRSGYHQLRIKDEDVPKTAFRSRYGHYEFIVMSFGLTNAPA 737

Query: 181 VFMDLMNKVFREFLDTFVIVFIDDILIYSKTEAEHEEHLRMVLQTLRDNK 231
           VFMDLMN+VFREFLDTFVIVFIDDILIYSKTE EHEEHLRMVLQTLRDNK
Sbjct: 738 VFMDLMNRVFREFLDTFVIVFIDDILIYSKTEVEHEEHLRMVLQTLRDNK 787

BLAST of Pay0013374 vs. NCBI nr
Match: KAA0031931.1 (pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 442.2 bits (1136), Expect = 2.8e-120
Identity = 218/230 (94.78%), Postives = 226/230 (98.26%), Query Frame = 0

Query: 1    MVDTGEVDVSLSLEPVVRDYPDVFSEELPGLPPHREIEFAIELEPGTIPISRAPYRMAPA 60
            +VDT EVDVSLS EPVVRDYPDVF EELPGLPPHRE+EFAIELEPGT+PISRAPYRMAPA
Sbjct: 896  VVDTREVDVSLSSEPVVRDYPDVFPEELPGLPPHREVEFAIELEPGTVPISRAPYRMAPA 955

Query: 61   ELKELKVQLQELLDKGFIRPSVSPFGAVVLFVKKKDGSMRLCIDYRELNKVTVKNRYPLP 120
            ELKELKVQLQELLDKGFIRPS+SP+GA VLFVKKKDGSMRLCIDYRELNKVTVKNRYPLP
Sbjct: 956  ELKELKVQLQELLDKGFIRPSMSPWGAPVLFVKKKDGSMRLCIDYRELNKVTVKNRYPLP 1015

Query: 121  KIDDLFDQLQGATVFSKIDLRSGYHQLRIKDGDVPKTAFRSRYGHYEFIVMSFGLTNAPA 180
            +IDDLFDQLQGATVFSKIDLRSGYHQLRIKDGDVPKTAFRSRYGHYEFIVMSFGLTNAPA
Sbjct: 1016 RIDDLFDQLQGATVFSKIDLRSGYHQLRIKDGDVPKTAFRSRYGHYEFIVMSFGLTNAPA 1075

Query: 181  VFMDLMNKVFREFLDTFVIVFIDDILIYSKTEAEHEEHLRMVLQTLRDNK 231
            VFMDLMN+VFREFLDTFVIVFIDDILIYSKTEAEHEEHLR+VLQTLRDNK
Sbjct: 1076 VFMDLMNRVFREFLDTFVIVFIDDILIYSKTEAEHEEHLRIVLQTLRDNK 1125

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Q993151.0e-4041.51Transposon Ty3-G Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 20... [more]
Q7LHG51.0e-4041.51Transposon Ty3-I Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 20... [more]
P0CT417.2e-3936.36Transposon Tf2-12 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24... [more]
P0CT347.2e-3936.36Transposon Tf2-1 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 248... [more]
P0CT357.2e-3936.36Transposon Tf2-2 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 248... [more]
Match NameE-valueIdentityDescription
A0A5A7TV576.0e-12195.22Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C2... [more]
A0A5A7SQP57.8e-12194.78Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C2... [more]
A0A5A7TW657.8e-12195.22DNA/RNA polymerases superfamily protein OS=Cucumis melo var. makuwa OX=1194695 G... [more]
A0A5A7T1901.0e-12095.22Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold37... [more]
A0A5A7SQU81.3e-12094.78Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold13... [more]
Match NameE-valueIdentityDescription
KAA0047433.11.2e-12095.22ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa][more]
KAA0047194.11.6e-12095.22DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa][more]
KAA0032356.11.6e-12094.78ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa][more]
KAA0037244.12.1e-12095.22reverse transcriptase [Cucumis melo var. makuwa][more]
KAA0031931.12.8e-12094.78pol protein [Cucumis melo var. makuwa][more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Melon (Payzawat) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000477Reverse transcriptase domainPFAMPF00078RVT_1coord: 92..229
e-value: 3.5E-24
score: 85.6
IPR000477Reverse transcriptase domainPROSITEPS50878RT_POLcoord: 73..230
score: 9.593082
IPR043128Reverse transcriptase/Diguanylate cyclase domainGENE3D3.30.70.270coord: 117..230
e-value: 4.9E-81
score: 273.1
NoneNo IPR availableGENE3D3.10.10.10HIV Type 1 Reverse Transcriptase, subunit A, domain 1coord: 37..177
e-value: 4.9E-81
score: 273.1
NoneNo IPR availablePANTHERPTHR24559:SF319SUBFAMILY NOT NAMEDcoord: 13..203
NoneNo IPR availablePANTHERPTHR24559TRANSPOSON TY3-I GAG-POL POLYPROTEINcoord: 13..203
NoneNo IPR availableCDDcd01647RT_LTRcoord: 76..230
e-value: 1.32342E-82
score: 242.116
IPR043502DNA/RNA polymerase superfamilySUPERFAMILY56672DNA/RNA polymerasescoord: 16..229

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Pay0013374.1Pay0013374.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0015074 DNA integration
biological_process GO:0090305 nucleic acid phosphodiester bond hydrolysis
biological_process GO:0006508 proteolysis
biological_process GO:0006355 regulation of transcription, DNA-templated
biological_process GO:0006278 RNA-dependent DNA biosynthetic process
cellular_component GO:0016021 integral component of membrane
molecular_function GO:0004190 aspartic-type endopeptidase activity
molecular_function GO:0003700 DNA-binding transcription factor activity
molecular_function GO:0004519 endonuclease activity
molecular_function GO:0003964 RNA-directed DNA polymerase activity
molecular_function GO:0043565 sequence-specific DNA binding
molecular_function GO:0008270 zinc ion binding