Pay0013338 (gene) Melon (Payzawat) v1

Overview


Name	Pay0013338
Type	gene
Organism	Cucumis melo L. var. inodorus cv. Payzawat (Melon (Payzawat) v1)
Description	Reverse transcriptase
Location	chr01: 20014986 .. 20015366 (-)
RNA-Seq Expression	Pay0013338
Synteny	Pay0013338

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexonpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTCTTTCTGAAGGTAGCACCTATGAAGGGTGTTCTGAGGTTCGAAAAGAAGGGGAAGCTGAGTCCACGCTTCGTAGGACCATTTGAGATACTGGAGCGGATTGGCCCCGTGGCTTATCGCTTGGCGTTGCCCCCATCTTTTTCTGCAGTGCACGATGTATTCCATGTCACCATGCTGAGGAGGTATGTCGCAGACCCGACGCATGTAGTGGACTTCGAACCACCGCAAATCAGTGAGAACTTGAGCTACAAGGAGCAGCCTGTCGAGATCTTGGCAAGGGAAGTCAAGAAGCTCCGTAGCCGAGAAATTTCACTGGTCAAAGTTCTTTGGCGGAACCATGAGTTGAAGAGGCCACATGGGAGAGAGAAGAGGACATGA

mRNA sequence

ATGGTCTTTCTGAAGGTAGCACCTATGAAGGGTGTTCTGAGGTTCGAAAAGAAGGGGAAGCTGAGTCCACGCTTCGTAGGACCATTTGAGATACTGGAGCGGATTGGCCCCGTGGCTTATCGCTTGGCGTTGCCCCCATCTTTTTCTGCAGTGCACGATGTATTCCATGTCACCATGCTGAGGAGGTATGTCGCAGACCCGACGCATGTAGTGGACTTCGAACCACCGCAAATCAGTGAGAACTTGAGCTACAAGGAGCAGCCTGTCGAGATCTTGGCAAGGGAAGTCAAGAAGCTCCGTAGCCGAGAAATTTCACTGGTCAAAGTTCTTTGGCGGAACCATGAGTTGAAGAGGCCACATGGGAGAGAGAAGAGGACATGA

Coding sequence (CDS)

ATGGTCTTTCTGAAGGTAGCACCTATGAAGGGTGTTCTGAGGTTCGAAAAGAAGGGGAAGCTGAGTCCACGCTTCGTAGGACCATTTGAGATACTGGAGCGGATTGGCCCCGTGGCTTATCGCTTGGCGTTGCCCCCATCTTTTTCTGCAGTGCACGATGTATTCCATGTCACCATGCTGAGGAGGTATGTCGCAGACCCGACGCATGTAGTGGACTTCGAACCACCGCAAATCAGTGAGAACTTGAGCTACAAGGAGCAGCCTGTCGAGATCTTGGCAAGGGAAGTCAAGAAGCTCCGTAGCCGAGAAATTTCACTGGTCAAAGTTCTTTGGCGGAACCATGAGTTGAAGAGGCCACATGGGAGAGAGAAGAGGACATGA

Protein sequence

MVFLKVAPMKGVLRFEKKGKLSPRFVGPFEILERIGPVAYRLALPPSFSAVHDVFHVTMLRRYVADPTHVVDFEPPQISENLSYKEQPVEILAREVKKLRSREISLVKVLWRNHELKRPHGREKRT

Homology

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BLAST of Pay0013338 vs. ExPASy TrEMBL
Match: A0A1S4DWH9 (uncharacterized protein LOC107990872 OS=Cucumis melo OX=3656 GN=LOC107990872 PE=4 SV=1)

HSP 1 Score: 251.5 bits (641), Expect = 1.8e-63
Identity = 126/126 (100.00%), Postives = 126/126 (100.00%), Query Frame = 0


Query: 1   MVFLKVAPMKGVLRFEKKGKLSPRFVGPFEILERIGPVAYRLALPPSFSAVHDVFHVTML 60
           MVFLKVAPMKGVLRFEKKGKLSPRFVGPFEILERIGPVAYRLALPPSFSAVHDVFHVTML
Sbjct: 1   MVFLKVAPMKGVLRFEKKGKLSPRFVGPFEILERIGPVAYRLALPPSFSAVHDVFHVTML 60

Query: 61  RRYVADPTHVVDFEPPQISENLSYKEQPVEILAREVKKLRSREISLVKVLWRNHELKRPH 120
           RRYVADPTHVVDFEPPQISENLSYKEQPVEILAREVKKLRSREISLVKVLWRNHELKRPH
Sbjct: 61  RRYVADPTHVVDFEPPQISENLSYKEQPVEILAREVKKLRSREISLVKVLWRNHELKRPH 120

Query: 121 GREKRT 127
           GREKRT
Sbjct: 121 GREKRT 126

[Close]

BLAST of Pay0013338 vs. ExPASy TrEMBL
Match: A0A5D3CIQ3 (Pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold304G00210 PE=4 SV=1)

HSP 1 Score: 219.5 bits (558), Expect = 7.7e-54
Identity = 110/114 (96.49%), Postives = 112/114 (98.25%), Query Frame = 0


Query: 1   MVFLKVAPMKGVLRFEKKGKLSPRFVGPFEILERIGPVAYRLALPPSFSAVHDVFHVTML 60
           MVFLKVAPMKGVLRFEKKGKLSPRFVGPFEILER GPVAYRLALPPSFSAVHDVFHV+ML
Sbjct: 211 MVFLKVAPMKGVLRFEKKGKLSPRFVGPFEILERFGPVAYRLALPPSFSAVHDVFHVSML 270

Query: 61  RRYVADPTHVVDFEPPQISENLSYKEQPVEILAREVKKLRSREISLVKVLWRNH 115
           RRYVADPTHVVDFEP QISENLSY+EQPVEILAREVKKLRSREISLVKVLWRNH
Sbjct: 271 RRYVADPTHVVDFEPLQISENLSYEEQPVEILAREVKKLRSREISLVKVLWRNH 324

[Close]

BLAST of Pay0013338 vs. ExPASy TrEMBL
Match: A0A5A7UDZ3 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold60G003790 PE=4 SV=1)

HSP 1 Score: 217.2 bits (552), Expect = 3.8e-53
Identity = 110/113 (97.35%), Postives = 111/113 (98.23%), Query Frame = 0


Query: 1    MVFLKVAPMKGVLRFEKKGKLSPRFVGPFEILERIGPVAYRLALPPSFSAVHDVFHVTML 60
            MVFLKVAPMKGVLRFEKKGKLSPRFVGPFEILERIGPVAYRLALPPSFSAVHDVFHV+ML
Sbjct: 1214 MVFLKVAPMKGVLRFEKKGKLSPRFVGPFEILERIGPVAYRLALPPSFSAVHDVFHVSML 1273

Query: 61   RRYVADPTHVVDFEPPQISENLSYKEQPVEILAREVKKLRSREISLVKVLWRN 114
            RRYVADPTHVVDFEP QISENLSY EQPVEILAREVKKLRSREISLVKVLWRN
Sbjct: 1274 RRYVADPTHVVDFEPLQISENLSYDEQPVEILAREVKKLRSREISLVKVLWRN 1326

[Close]

BLAST of Pay0013338 vs. ExPASy TrEMBL
Match: A0A5D3CJW2 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold769G00440 PE=4 SV=1)

HSP 1 Score: 217.2 bits (552), Expect = 3.8e-53
Identity = 110/113 (97.35%), Postives = 111/113 (98.23%), Query Frame = 0


Query: 1    MVFLKVAPMKGVLRFEKKGKLSPRFVGPFEILERIGPVAYRLALPPSFSAVHDVFHVTML 60
            MVFLKVAPMKGVLRFEKKGKLSPRFVGPFEILERIGPVAYRLALPPSFSAVHDVFHV+ML
Sbjct: 1214 MVFLKVAPMKGVLRFEKKGKLSPRFVGPFEILERIGPVAYRLALPPSFSAVHDVFHVSML 1273

Query: 61   RRYVADPTHVVDFEPPQISENLSYKEQPVEILAREVKKLRSREISLVKVLWRN 114
            RRYVADPTHVVDFEP QISENLSY EQPVEILAREVKKLRSREISLVKVLWRN
Sbjct: 1274 RRYVADPTHVVDFEPLQISENLSYDEQPVEILAREVKKLRSREISLVKVLWRN 1326

[Close]

BLAST of Pay0013338 vs. ExPASy TrEMBL
Match: A0A5D3C081 (Pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold5117G00010 PE=4 SV=1)

HSP 1 Score: 217.2 bits (552), Expect = 3.8e-53
Identity = 108/114 (94.74%), Postives = 112/114 (98.25%), Query Frame = 0


Query: 1   MVFLKVAPMKGVLRFEKKGKLSPRFVGPFEILERIGPVAYRLALPPSFSAVHDVFHVTML 60
           MVFLKVAPMKGVLRFEKKGKLSPRFVGPFEILERIGPVAYRLALPPSF AVHDVFHV+M+
Sbjct: 535 MVFLKVAPMKGVLRFEKKGKLSPRFVGPFEILERIGPVAYRLALPPSFFAVHDVFHVSMM 594

Query: 61  RRYVADPTHVVDFEPPQISENLSYKEQPVEILAREVKKLRSREISLVKVLWRNH 115
           RRYVADPTHVVDFEP QISENLSY+EQPVEILAREVKKLRSREISLVKV+WRNH
Sbjct: 595 RRYVADPTHVVDFEPLQISENLSYEEQPVEILAREVKKLRSREISLVKVIWRNH 648

[Close]

BLAST of Pay0013338 vs. NCBI nr
Match: XP_016900342.1 (PREDICTED: uncharacterized protein LOC107990872 [Cucumis melo])

HSP 1 Score: 251.5 bits (641), Expect = 3.8e-63
Identity = 126/126 (100.00%), Postives = 126/126 (100.00%), Query Frame = 0


Query: 1   MVFLKVAPMKGVLRFEKKGKLSPRFVGPFEILERIGPVAYRLALPPSFSAVHDVFHVTML 60
           MVFLKVAPMKGVLRFEKKGKLSPRFVGPFEILERIGPVAYRLALPPSFSAVHDVFHVTML
Sbjct: 1   MVFLKVAPMKGVLRFEKKGKLSPRFVGPFEILERIGPVAYRLALPPSFSAVHDVFHVTML 60

Query: 61  RRYVADPTHVVDFEPPQISENLSYKEQPVEILAREVKKLRSREISLVKVLWRNHELKRPH 120
           RRYVADPTHVVDFEPPQISENLSYKEQPVEILAREVKKLRSREISLVKVLWRNHELKRPH
Sbjct: 61  RRYVADPTHVVDFEPPQISENLSYKEQPVEILAREVKKLRSREISLVKVLWRNHELKRPH 120

Query: 121 GREKRT 127
           GREKRT
Sbjct: 121 GREKRT 126

[Close]

BLAST of Pay0013338 vs. NCBI nr
Match: TYK11711.1 (pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 219.5 bits (558), Expect = 1.6e-53
Identity = 110/114 (96.49%), Postives = 112/114 (98.25%), Query Frame = 0


Query: 1   MVFLKVAPMKGVLRFEKKGKLSPRFVGPFEILERIGPVAYRLALPPSFSAVHDVFHVTML 60
           MVFLKVAPMKGVLRFEKKGKLSPRFVGPFEILER GPVAYRLALPPSFSAVHDVFHV+ML
Sbjct: 211 MVFLKVAPMKGVLRFEKKGKLSPRFVGPFEILERFGPVAYRLALPPSFSAVHDVFHVSML 270

Query: 61  RRYVADPTHVVDFEPPQISENLSYKEQPVEILAREVKKLRSREISLVKVLWRNH 115
           RRYVADPTHVVDFEP QISENLSY+EQPVEILAREVKKLRSREISLVKVLWRNH
Sbjct: 271 RRYVADPTHVVDFEPLQISENLSYEEQPVEILAREVKKLRSREISLVKVLWRNH 324

[Close]

BLAST of Pay0013338 vs. NCBI nr
Match: TYK04678.1 (pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 217.2 bits (552), Expect = 7.9e-53
Identity = 108/114 (94.74%), Postives = 112/114 (98.25%), Query Frame = 0


Query: 1   MVFLKVAPMKGVLRFEKKGKLSPRFVGPFEILERIGPVAYRLALPPSFSAVHDVFHVTML 60
           MVFLKVAPMKGVLRFEKKGKLSPRFVGPFEILERIGPVAYRLALPPSF AVHDVFHV+M+
Sbjct: 535 MVFLKVAPMKGVLRFEKKGKLSPRFVGPFEILERIGPVAYRLALPPSFFAVHDVFHVSMM 594

Query: 61  RRYVADPTHVVDFEPPQISENLSYKEQPVEILAREVKKLRSREISLVKVLWRNH 115
           RRYVADPTHVVDFEP QISENLSY+EQPVEILAREVKKLRSREISLVKV+WRNH
Sbjct: 595 RRYVADPTHVVDFEPLQISENLSYEEQPVEILAREVKKLRSREISLVKVIWRNH 648

[Close]

BLAST of Pay0013338 vs. NCBI nr
Match: TYK12237.1 (pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 217.2 bits (552), Expect = 7.9e-53
Identity = 110/113 (97.35%), Postives = 111/113 (98.23%), Query Frame = 0


Query: 1    MVFLKVAPMKGVLRFEKKGKLSPRFVGPFEILERIGPVAYRLALPPSFSAVHDVFHVTML 60
            MVFLKVAPMKGVLRFEKKGKLSPRFVGPFEILERIGPVAYRLALPPSFSAVHDVFHV+ML
Sbjct: 1214 MVFLKVAPMKGVLRFEKKGKLSPRFVGPFEILERIGPVAYRLALPPSFSAVHDVFHVSML 1273

Query: 61   RRYVADPTHVVDFEPPQISENLSYKEQPVEILAREVKKLRSREISLVKVLWRN 114
            RRYVADPTHVVDFEP QISENLSY EQPVEILAREVKKLRSREISLVKVLWRN
Sbjct: 1274 RRYVADPTHVVDFEPLQISENLSYDEQPVEILAREVKKLRSREISLVKVLWRN 1326

[Close]

BLAST of Pay0013338 vs. NCBI nr
Match: KAA0051925.1 (pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 217.2 bits (552), Expect = 7.9e-53
Identity = 110/113 (97.35%), Postives = 111/113 (98.23%), Query Frame = 0


Query: 1    MVFLKVAPMKGVLRFEKKGKLSPRFVGPFEILERIGPVAYRLALPPSFSAVHDVFHVTML 60
            MVFLKVAPMKGVLRFEKKGKLSPRFVGPFEILERIGPVAYRLALPPSFSAVHDVFHV+ML
Sbjct: 1214 MVFLKVAPMKGVLRFEKKGKLSPRFVGPFEILERIGPVAYRLALPPSFSAVHDVFHVSML 1273

Query: 61   RRYVADPTHVVDFEPPQISENLSYKEQPVEILAREVKKLRSREISLVKVLWRN 114
            RRYVADPTHVVDFEP QISENLSY EQPVEILAREVKKLRSREISLVKVLWRN
Sbjct: 1274 RRYVADPTHVVDFEPLQISENLSYDEQPVEILAREVKKLRSREISLVKVLWRN 1326

[Close]

BLAST of Pay0013338 vs. TAIR 10
Match: AT1G42190.1 (GAG/POL/ENV polyprotein )

HSP 1 Score: 42.0 bits (97), Expect = 4.2e-04
Identity = 18/43 (41.86%), Postives = 26/43 (60.47%), Query Frame = 0


Query: 40 YRLALPPSFSAVHDVFHVTMLRRYVADPTHVVDFEPPQISENL 83
          Y+L LP    A H VFHV+MLR+ +    +V+   PP + EN+
Sbjct: 2  YKLDLPTLMDAFHKVFHVSMLRKCITHQENVISEPPPDLLENM 44

The following BLAST results are available for this feature:

BLAST of Pay0013338 vs.


Match Name	E-value	Identity	Description

BLAST of Pay0013338 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S4DWH9	1.8e-63	100.00	uncharacterized protein LOC107990872 OS=Cucumis melo OX=3656 GN=LOC107990872 PE=...	[more]
A0A5D3CIQ3	7.7e-54	96.49	Pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold304G00210 PE...	[more]
A0A5A7UDZ3	3.8e-53	97.35	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold60...	[more]
A0A5D3CJW2	3.8e-53	97.35	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold76...	[more]
A0A5D3C081	3.8e-53	94.74	Pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold5117G00010 P...	[more]

BLAST of Pay0013338 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_016900342.1	3.8e-63	100.00	PREDICTED: uncharacterized protein LOC107990872 [Cucumis melo]	[more]
TYK11711.1	1.6e-53	96.49	pol protein [Cucumis melo var. makuwa]	[more]
TYK04678.1	7.9e-53	94.74	pol protein [Cucumis melo var. makuwa]	[more]
TYK12237.1	7.9e-53	97.35	pol protein [Cucumis melo var. makuwa]	[more]
KAA0051925.1	7.9e-53	97.35	pol protein [Cucumis melo var. makuwa]	[more]

BLAST of Pay0013338 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G42190.1	4.2e-04	41.86	GAG/POL/ENV polyprotein	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (Payzawat) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR46148:SF21	DOMAIN PROTEIN, PUTATIVE-RELATED	coord: 3..115
None	No IPR available	PANTHER	PTHR46148	FAMILY NOT NAMED	coord: 3..115

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Pay0013338.1	Pay0013338.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015074	DNA integration
biological_process	GO:0090305	nucleic acid phosphodiester bond hydrolysis
biological_process	GO:0006508	proteolysis
biological_process	GO:0006278	RNA-dependent DNA biosynthetic process
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0004190	aspartic-type endopeptidase activity
molecular_function	GO:0004519	endonuclease activity
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0003964	RNA-directed DNA polymerase activity
molecular_function	GO:0008270	zinc ion binding