Pay0013286 (gene) Melon (Payzawat) v1

Overview


Name	Pay0013286
Type	gene
Organism	Cucumis melo L. var. inodorus cv. Payzawat (Melon (Payzawat) v1)
Description	conserved peptide upstream open reading frame 17
Location	chr07: 7564171 .. 7564374 (+)
RNA-Seq Expression	Pay0013286
Synteny	Pay0013286

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAACTGTTTGGGAAAGCTGGGTTTAAACTTGAGTTCTAATTCTAATCACTTCATTACGTGTCTTTTGCTTTTTCTCCTCCATTATTCGCCTCAATTGACTCCTTCTTTGTTTAATTTCGACTATAAATCCATTGATCACTTGTTATTACTGCTTTTGAATCTTGATTCCAATCGTTTTCTTAATAATAAACCGACGACTTAA

mRNA sequence

ATGAACTGTTTGGGAAAGCTGGGTTTAAACTTGAGTTCTAATTCTAATCACTTCATTACGTGTCTTTTGCTTTTTCTCCTCCATTATTCGCCTCAATTGACTCCTTCTTTGTTTAATTTCGACTATAAATCCATTGATCACTTGTTATTACTGCTTTTGAATCTTGATTCCAATCGTTTTCTTAATAATAAACCGACGACTTAA

Coding sequence (CDS)

ATGAACTGTTTGGGAAAGCTGGGTTTAAACTTGAGTTCTAATTCTAATCACTTCATTACGTGTCTTTTGCTTTTTCTCCTCCATTATTCGCCTCAATTGACTCCTTCTTTGTTTAATTTCGACTATAAATCCATTGATCACTTGTTATTACTGCTTTTGAATCTTGATTCCAATCGTTTTCTTAATAATAAACCGACGACTTAA

Protein sequence

MNCLGKLGLNLSSNSNHFITCLLLFLLHYSPQLTPSLFNFDYKSIDHLLLLLLNLDSNRFLNNKPTT

Homology

[Close]

BLAST of Pay0013286 vs. ExPASy TrEMBL
Match: A0A1S3CLZ5 (uncharacterized protein LOC103502484 OS=Cucumis melo OX=3656 GN=LOC103502484 PE=4 SV=1)

HSP 1 Score: 136.3 bits (342), Expect = 4.6e-29
Identity = 67/67 (100.00%), Postives = 67/67 (100.00%), Query Frame = 0


Query: 1  MNCLGKLGLNLSSNSNHFITCLLLFLLHYSPQLTPSLFNFDYKSIDHLLLLLLNLDSNRF 60
          MNCLGKLGLNLSSNSNHFITCLLLFLLHYSPQLTPSLFNFDYKSIDHLLLLLLNLDSNRF
Sbjct: 1  MNCLGKLGLNLSSNSNHFITCLLLFLLHYSPQLTPSLFNFDYKSIDHLLLLLLNLDSNRF 60

Query: 61 LNNKPTT 68
          LNNKPTT
Sbjct: 61 LNNKPTT 67

[Close]

BLAST of Pay0013286 vs. ExPASy TrEMBL
Match: A0A2P2MJZ7 (Uncharacterized protein LOC103965579 OS=Rhizophora mucronata OX=61149 PE=4 SV=1)

HSP 1 Score: 63.9 bits (154), Expect = 2.9e-07
Identity = 36/64 (56.25%), Postives = 43/64 (67.19%), Query Frame = 0


Query: 1  MNCLGKLGLN-LSSNSNHFITCLLLFLLHYSPQLTPSLFNFDYKSIDHLLLLLLNLDSNR 60
          M+  GK G    SSNSNHF+TCLL+F LH+SPQL PSLF F  KSI+ LL LL+      
Sbjct: 1  MSWFGKPGCYFFSSNSNHFLTCLLIFTLHFSPQLPPSLFKFQNKSIEPLLALLVASSDRN 60

Query: 61 FLNN 64
          F +N
Sbjct: 61 FNSN 64

[Close]

BLAST of Pay0013286 vs. ExPASy TrEMBL
Match: A0A199VDA8 (Putative polyamine oxidase 2 OS=Ananas comosus OX=4615 GN=ACMD2_00651 PE=4 SV=1)

HSP 1 Score: 55.8 bits (133), Expect = 7.8e-05
Identity = 28/39 (71.79%), Postives = 31/39 (79.49%), Query Frame = 0


Query: 1  MNCLGKLGLNLSSNSNHFITCLLLFLLHYSPQLTPSLFN 40
          MN    LGLN  SNSNHFITCLL+F+LHYSPQL PS+ N
Sbjct: 1  MNWFVNLGLN--SNSNHFITCLLIFVLHYSPQLPPSILN 37

[Close]

BLAST of Pay0013286 vs. ExPASy TrEMBL
Match: A0A1D6JES6 (Uncharacterized protein OS=Zea mays OX=4577 GN=103642073 PE=4 SV=1)

HSP 1 Score: 53.9 bits (128), Expect = 3.0e-04
Identity = 26/39 (66.67%), Postives = 30/39 (76.92%), Query Frame = 0


Query: 1  MNCLGKLGLNLSSNSNHFITCLLLFLLHYSPQLTPSLFN 40
          MNC   LGLN  SNSNH++ CLL+FLLH+SPQL PS  N
Sbjct: 1  MNCFVNLGLN--SNSNHYVACLLIFLLHFSPQLNPSNSN 37

[Close]

BLAST of Pay0013286 vs. ExPASy TrEMBL
Match: B6UEU4 (Uncharacterized protein OS=Zea mays OX=4577 PE=2 SV=1)

HSP 1 Score: 53.9 bits (128), Expect = 3.0e-04
Identity = 26/39 (66.67%), Postives = 30/39 (76.92%), Query Frame = 0


Query: 1  MNCLGKLGLNLSSNSNHFITCLLLFLLHYSPQLTPSLFN 40
          MNC   LGLN  SNSNH++ CLL+FLLH+SPQL PS  N
Sbjct: 1  MNCFVNLGLN--SNSNHYVACLLIFLLHFSPQLNPSNSN 37

[Close]

BLAST of Pay0013286 vs. NCBI nr
Match: XP_008464647.1 (PREDICTED: uncharacterized protein LOC103502484 [Cucumis melo])

HSP 1 Score: 136.3 bits (342), Expect = 9.4e-29
Identity = 67/67 (100.00%), Postives = 67/67 (100.00%), Query Frame = 0


Query: 1  MNCLGKLGLNLSSNSNHFITCLLLFLLHYSPQLTPSLFNFDYKSIDHLLLLLLNLDSNRF 60
          MNCLGKLGLNLSSNSNHFITCLLLFLLHYSPQLTPSLFNFDYKSIDHLLLLLLNLDSNRF
Sbjct: 1  MNCLGKLGLNLSSNSNHFITCLLLFLLHYSPQLTPSLFNFDYKSIDHLLLLLLNLDSNRF 60

Query: 61 LNNKPTT 68
          LNNKPTT
Sbjct: 61 LNNKPTT 67

[Close]

BLAST of Pay0013286 vs. NCBI nr
Match: OAY75003.1 (putative polyamine oxidase 2 [Ananas comosus])

HSP 1 Score: 55.8 bits (133), Expect = 1.6e-04
Identity = 28/39 (71.79%), Postives = 31/39 (79.49%), Query Frame = 0


Query: 1  MNCLGKLGLNLSSNSNHFITCLLLFLLHYSPQLTPSLFN 40
          MN    LGLN  SNSNHFITCLL+F+LHYSPQL PS+ N
Sbjct: 1  MNWFVNLGLN--SNSNHFITCLLIFVLHYSPQLPPSILN 37

[Close]

BLAST of Pay0013286 vs. NCBI nr
Match: ACG47877.1 (hypothetical protein [Zea mays])

HSP 1 Score: 53.9 bits (128), Expect = 6.1e-04
Identity = 26/39 (66.67%), Postives = 30/39 (76.92%), Query Frame = 0


Query: 1  MNCLGKLGLNLSSNSNHFITCLLLFLLHYSPQLTPSLFN 40
          MNC   LGLN  SNSNH++ CLL+FLLH+SPQL PS  N
Sbjct: 1  MNCFVNLGLN--SNSNHYVACLLIFLLHFSPQLNPSNSN 37

[Close]

BLAST of Pay0013286 vs. NCBI nr
Match: AQK46272.1 (hypothetical protein ZEAMMB73_Zm00001d026334 [Zea mays])

HSP 1 Score: 53.9 bits (128), Expect = 6.1e-04
Identity = 26/39 (66.67%), Postives = 30/39 (76.92%), Query Frame = 0


Query: 1  MNCLGKLGLNLSSNSNHFITCLLLFLLHYSPQLTPSLFN 40
          MNC   LGLN  SNSNH++ CLL+FLLH+SPQL PS  N
Sbjct: 1  MNCFVNLGLN--SNSNHYVACLLIFLLHFSPQLNPSNSN 37

[Close]

BLAST of Pay0013286 vs. TAIR 10
Match: AT2G43018.1 (conserved peptide upstream open reading frame 17 )

HSP 1 Score: 42.0 bits (97), Expect = 2.2e-04
Identity = 27/62 (43.55%), Postives = 37/62 (59.68%), Query Frame = 0


Query: 1  MNCLGKLGLNLSSNSNHFITCLLLFLLHYSPQLTPSLFNFDYKSIDHLLLLLLNLDSNRF 60
          MN  G L +  SS S+HF TCLL+F+LH+SPQL  +  N +     +      NL+SNR 
Sbjct: 1  MNLFGSL-IFSSSISSHFTTCLLIFILHFSPQLNSNNNNNNSNRNSN------NLESNRL 55

Query: 61 LN 63
          +N
Sbjct: 61 IN 55

The following BLAST results are available for this feature:

BLAST of Pay0013286 vs.


Match Name	E-value	Identity	Description

BLAST of Pay0013286 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S3CLZ5	4.6e-29	100.00	uncharacterized protein LOC103502484 OS=Cucumis melo OX=3656 GN=LOC103502484 PE=...	[more]
A0A2P2MJZ7	2.9e-07	56.25	Uncharacterized protein LOC103965579 OS=Rhizophora mucronata OX=61149 PE=4 SV=1	[more]
A0A199VDA8	7.8e-05	71.79	Putative polyamine oxidase 2 OS=Ananas comosus OX=4615 GN=ACMD2_00651 PE=4 SV=1	[more]
A0A1D6JES6	3.0e-04	66.67	Uncharacterized protein OS=Zea mays OX=4577 GN=103642073 PE=4 SV=1	[more]
B6UEU4	3.0e-04	66.67	Uncharacterized protein OS=Zea mays OX=4577 PE=2 SV=1	[more]

BLAST of Pay0013286 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008464647.1	9.4e-29	100.00	PREDICTED: uncharacterized protein LOC103502484 [Cucumis melo]	[more]
OAY75003.1	1.6e-04	71.79	putative polyamine oxidase 2 [Ananas comosus]	[more]
ACG47877.1	6.1e-04	66.67	hypothetical protein [Zea mays]	[more]
AQK46272.1	6.1e-04	66.67	hypothetical protein ZEAMMB73_Zm00001d026334 [Zea mays]	[more]

BLAST of Pay0013286 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G43018.1	2.2e-04	43.55	conserved peptide upstream open reading frame 17	[more]

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Pay0013286.1	Pay0013286.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0046208	spermine catabolic process
cellular_component	GO:0005777	peroxisome
molecular_function	GO:0050660	flavin adenine dinucleotide binding
molecular_function	GO:0046592	polyamine oxidase activity