Pay0013251 (gene) Melon (Payzawat) v1

Overview
NamePay0013251
Typegene
OrganismCucumis melo L. var. inodorus cv. Payzawat (Melon (Payzawat) v1)
DescriptionGeneral transcription factor IIH subunit 5-like
Locationchr06: 33176943 .. 33179509 (+)
RNA-Seq ExpressionPay0013251
SyntenyPay0013251
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
GGACACTCTTTGTACAATCCCATCGAGGATGAAGACTAGGAGCAAACAAAATTCGAGAGAAACTATAAATACAAGAGTAAGTTAATTAGACTAATCGAAGGTATTTTCAAATGAACCAAAATATATGAAATATACATTGGGAGTCTGTGTTTAAGAGAACCTCTAAAGAAAAGAAAGAAAAGGTCTTTCTTCCCGTCGGCCACACTCTCTCGCTTGATCGCACAGCAAGGCCATCCCCCCATCTCCGATCGTTCTGCTGCCGGCCGGCCAGTCGTGTAGAATTGCCAGCAGTCCGCCGGAGGTAAGGTTTCTTTCTCTTTCTCTCTCTCTCTCATCATTTTTCGAGCTTCAATTGAAAATATGATCTATTGCCTTCCAATTTTCAATCGGCACTACGACAATAGGTTTCTTCTCATTCCCTAACCCTAGAATAGATTTATTAGCCATGAAATGATTAATCTGAAAATTGACCTTGGAATGCTTCTCTACTGCCGTCTTTATTAAGAATGAGAAGAAATTAAAGTTTCATAAGTTTCGAAGGAAGATGATTTAGAACACTTCAACTAGAAATCTCTTCTATAACGAGGGCTGCCTTAGAAGCTTGAAGATTCTTCTCATACTTCCTAAGAAGATCCTTTTTCATAGACTAGAAAGTGAGCCAGCCTTGTTTATTGATTAATCAATTGAAATTGGAATGTAGGGACTGAGTTTCAGTTAAATTTGTTCTGCTGCTGTTTGAGGGACGGCGTTTTTGACATCATGGTTAATGCTATTAAAGGGATGTTCATCTCCTGGTAAAATGCCTTCTTCTGCATTACTTGAAAGATAGATATCTATTTTTGGGTGTACTTTCTTCTGTTTGATTATGGAGTTTTGTTTCCTTCTGTTAGTTGTTTCGTTGATCTCTTTGGAATTGCTATGATATTTGAACGACACAGCTTCTACGAGACTAGAGACTTCAATTGCGATTTTGTTTATTATTTCTCTTGTTTGGTTATGTTCAACTTCAATCTTTCTTCCCCCCTTCCCCGTTTTTCTTTATGATCTCTTCTGATTACTGTAATAGAGTTTGTGATTATTATGACAGTTTAAATGGTGGAGCTTCTTATAATTCTTAGAAATTTCACTGGGAGTCTACTAATACTTGGGGCTATAAGATTCTTCTTTCTTTCTTTTTCCTCAGTACTTGTCGGATGATAATCTCGTCTTTGGACTTGGTATGACAATCGAAATGGCTTCACTTTTAAAAGACTTCAAACTTGCATTGTGATATTGTTTGGTTACTTGGGATTTTGTTGGTCTTTCTTTTTCTCTCCCTGATTTTTAAATGATTGTTTCTAAACGTTGGGCTAGAGTTTGGCATGGAGTGGAGTTGTTTAGTTTTGGATATGAAATCAATGTTTTTTAGTTATGGGAACCATAGTGGGTCAGGGTCTAAGAACTCGTTAAGCCAAACGAGAAGCAGAGTTAGCAACTCCATTCCCCCAACTCCGACTCCTTGGGTCAAACATGCCTTTATGTGATCATTATGTCATTCTAAAGGAAAGCTTTGATGATGTCTACCAATACTTGGGGTCGTGTTCTCTTCTTCTCTCTCCCCCTGCTCCTCCCTAGTCATTGTTGGATGATCTCTTTTGAACACTATGATAGGCCTTTAGAATTAGTACGACAATCAAAATGACAACACTTTTAGAAGACTCGAAACTTTGTGATATCGTTTACCATTTGGGATCTTGTTCATTTTTTTCTCCCTGTTCTGTTGATGATTATATTCTCTTCTAAACATTGGAATAGGTCACTGGGATGTTGGTACGACTTTTGAGTTATTGTTTCTTATTCAAATAACGAGGCACAATGACCTTGGCAGTTATCCATTTTGCAATGATGTGGTAGAATTTGTTATTAGCAGCAGTTCGTATAGCTTGAAATATCTTTGTGTATTCTATCATACACCATTTGTGAACACGGTAAATGGTTTTTGATATGCATTTGATGTTGCCTTCCTTTCATCTTTAATTTGCAACTTTTGGCAAAACTTCATGCTAGCTTTACTAAGGGGGGATTGGATTGGGAGAAAATGCAAAACTTCTTGCTTTTCAGGATGAATAGAATTGTTGGCATTTTCTTGTGTTAAGATAAATTAACTTCTTCCTTTATGCAGTGACGTACCTATGGCACAATTTATCATCAATTACAATGCCTCCTTGCCTGCATCCCATAGATTTATAATCCATATACTGGATAACACTCACATGTTTGTGCAACCCCATGTAGCTGACATGATTCGGAACGCCATCTCAGAATTTCGAGATCAGATTTCTTATGAGAAACCTACTTGAGCCATGTTGTTAATCGAAGTTTCACTATATAATTGTATTTTTTTTTTTTTTTTTGGAGTTATAGATTTTGCTTCTAAAATTTATTGTGCATTTAAACAGTTTTACTTTGTAGTGATGTCTCTCCACTATGCAATGTATATCATCTGACTTGAAGATCTAAAATGGCAGAGACTGGTCATTTTTAAGGTGGACACCAAATTTAAAATAATATATTTCTCTTTAAAAAGG

mRNA sequence

GGACACTCTTTGTACAATCCCATCGAGGATGAAGACTAGGAGCAAACAAAATTCGAGAGAAACTATAAATACAAGAGTAAGTTAATTAGACTAATCGAAGGTATTTTCAAATGAACCAAAATATATGAAATATACATTGGGAGTCTGTGTTTAAGAGAACCTCTAAAGAAAAGAAAGAAAAGGTCTTTCTTCCCGTCGGCCACACTCTCTCGCTTGATCGCACAGCAAGGCCATCCCCCCATCTCCGATCGTTCTGCTGCCGGCCGGCCAGTCGTGTAGAATTGCCAGCAGTCCGCCGGAGGGACTGAGTTTCAGTTAAATTTGTTCTGCTGCTGTTTGAGGGACGGCGTTTTTGACATCATGGTTAATGCTATTAAAGGGATGTTCATCTCCTGTGACGTACCTATGGCACAATTTATCATCAATTACAATGCCTCCTTGCCTGCATCCCATAGATTTATAATCCATATACTGGATAACACTCACATGTTTGTGCAACCCCATGTAGCTGACATGATTCGGAACGCCATCTCAGAATTTCGAGATCAGATTTCTTATGAGAAACCTACTTGAGCCATGTTGTTAATCGAAGTTTCACTATATAATTGTATTTTTTTTTTTTTTTTTGGAGTTATAGATTTTGCTTCTAAAATTTATTGTGCATTTAAACAGTTTTACTTTGTAGTGATGTCTCTCCACTATGCAATGTATATCATCTGACTTGAAGATCTAAAATGGCAGAGACTGGTCATTTTTAAGGTGGACACCAAATTTAAAATAATATATTTCTCTTTAAAAAGG

Coding sequence (CDS)

ATGGTTAATGCTATTAAAGGGATGTTCATCTCCTGTGACGTACCTATGGCACAATTTATCATCAATTACAATGCCTCCTTGCCTGCATCCCATAGATTTATAATCCATATACTGGATAACACTCACATGTTTGTGCAACCCCATGTAGCTGACATGATTCGGAACGCCATCTCAGAATTTCGAGATCAGATTTCTTATGAGAAACCTACTTGA

Protein sequence

MVNAIKGMFISCDVPMAQFIINYNASLPASHRFIIHILDNTHMFVQPHVADMIRNAISEFRDQISYEKPT
Homology
[Close]
BLAST of Pay0013251 vs. ExPASy Swiss-Prot
Match: Q6NNM0 (General transcription and DNA repair factor IIH subunit TFB5 OS=Arabidopsis thaliana OX=3702 GN=TFB5 PE=3 SV=1)

HSP 1 Score: 115.2 bits (287), Expect = 3.1e-25
Identity = 51/70 (72.86%), Postives = 62/70 (88.57%), Query Frame = 0 

Query: 1  MVNAIKGMFISCDVPMAQFIINYNASLPASHRFIIHILDNTHMFVQPHVADMIRNAISEF 60
          MVNAIKG+F+SCD+PM QFI+N N S+P S +FIIH+LD+TH+FVQPHV  MIR+AIS+F
Sbjct: 1  MVNAIKGVFVSCDIPMTQFIVNMNNSMPPSQKFIIHVLDSTHLFVQPHVEQMIRSAISDF 60

Query: 61 RDQISYEKPT 71
          RDQ SYEKPT
Sbjct: 61 RDQNSYEKPT 70

[Close]
BLAST of Pay0013251 vs. ExPASy Swiss-Prot
Match: Q5ZKH0 (General transcription factor IIH subunit 5 OS=Gallus gallus OX=9031 GN=GTF2H5 PE=3 SV=1)

HSP 1 Score: 53.9 bits (128), Expect = 8.4e-07
Identity = 25/66 (37.88%), Postives = 38/66 (57.58%), Query Frame = 0 

Query: 1  MVNAIKGMFISCDVPMAQFIINYNASLPASHRFIIHILDNTHMFVQPHVADMIRNAISEF 60
          MVN +KG+ I CD  M QF++  + S     +FII  LD TH+FV   + + ++  + E 
Sbjct: 1  MVNVLKGVLIECDPAMKQFLLYLDESNALGKKFIIQDLDETHVFVLAELVNFLQERVGEL 60

Query: 61 RDQISY 67
           DQ S+
Sbjct: 61 MDQNSF 66

[Close]
BLAST of Pay0013251 vs. ExPASy Swiss-Prot
Match: Q2T9Z5 (General transcription factor IIH subunit 5 OS=Bos taurus OX=9913 GN=GTF2H5 PE=3 SV=1)

HSP 1 Score: 52.4 bits (124), Expect = 2.4e-06
Identity = 23/66 (34.85%), Postives = 40/66 (60.61%), Query Frame = 0 

Query: 1  MVNAIKGMFISCDVPMAQFIINYNASLPASHRFIIHILDNTHMFVQPHVADMIRNAISEF 60
          MVN +KG+ I CD  M QF++  + S     +FII  +D+TH+FV   + ++++  + E 
Sbjct: 1  MVNVLKGVLIECDPAMKQFLLYLDESNALGKKFIIQDIDDTHVFVIAELVNVLQERVGEL 60

Query: 61 RDQISY 67
           DQ ++
Sbjct: 61 MDQNAF 66

[Close]
BLAST of Pay0013251 vs. ExPASy Swiss-Prot
Match: Q6ZYL4 (General transcription factor IIH subunit 5 OS=Homo sapiens OX=9606 GN=GTF2H5 PE=1 SV=1)

HSP 1 Score: 52.4 bits (124), Expect = 2.4e-06
Identity = 23/66 (34.85%), Postives = 40/66 (60.61%), Query Frame = 0 

Query: 1  MVNAIKGMFISCDVPMAQFIINYNASLPASHRFIIHILDNTHMFVQPHVADMIRNAISEF 60
          MVN +KG+ I CD  M QF++  + S     +FII  +D+TH+FV   + ++++  + E 
Sbjct: 1  MVNVLKGVLIECDPAMKQFLLYLDESNALGKKFIIQDIDDTHVFVIAELVNVLQERVGEL 60

Query: 61 RDQISY 67
           DQ ++
Sbjct: 61 MDQNAF 66

[Close]
BLAST of Pay0013251 vs. ExPASy Swiss-Prot
Match: Q8K2X8 (General transcription factor IIH subunit 5 OS=Mus musculus OX=10090 GN=Gtf2h5 PE=1 SV=1)

HSP 1 Score: 51.2 bits (121), Expect = 5.5e-06
Identity = 22/66 (33.33%), Postives = 40/66 (60.61%), Query Frame = 0 

Query: 1  MVNAIKGMFISCDVPMAQFIINYNASLPASHRFIIHILDNTHMFVQPHVADMIRNAISEF 60
          MVN +KG+ I CD  M QF++  + +     +FII  +D+TH+FV   + ++++  + E 
Sbjct: 1  MVNVLKGVLIECDPAMKQFLLYLDEANALGKKFIIQDIDDTHVFVIAELVNVLQERVGEL 60

Query: 61 RDQISY 67
           DQ ++
Sbjct: 61 MDQNAF 66

[Close]
BLAST of Pay0013251 vs. ExPASy TrEMBL
Match: A0A1S3BK87 (RNA polymerase II transcription factor B subunit 5 OS=Cucumis melo OX=3656 GN=LOC103490941 PE=3 SV=1)

HSP 1 Score: 145.2 bits (365), Expect = 1.0e-31
Identity = 70/70 (100.00%), Postives = 70/70 (100.00%), Query Frame = 0 

Query: 1  MVNAIKGMFISCDVPMAQFIINYNASLPASHRFIIHILDNTHMFVQPHVADMIRNAISEF 60
          MVNAIKGMFISCDVPMAQFIINYNASLPASHRFIIHILDNTHMFVQPHVADMIRNAISEF
Sbjct: 1  MVNAIKGMFISCDVPMAQFIINYNASLPASHRFIIHILDNTHMFVQPHVADMIRNAISEF 60

Query: 61 RDQISYEKPT 71
          RDQISYEKPT
Sbjct: 61 RDQISYEKPT 70

[Close]
BLAST of Pay0013251 vs. ExPASy TrEMBL
Match: A0A0A0L4F5 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G036500 PE=3 SV=1)

HSP 1 Score: 143.3 bits (360), Expect = 3.9e-31
Identity = 68/70 (97.14%), Postives = 70/70 (100.00%), Query Frame = 0 

Query: 1  MVNAIKGMFISCDVPMAQFIINYNASLPASHRFIIHILDNTHMFVQPHVADMIRNAISEF 60
          MVNAIKGMFISCD+PMAQFIINYNASLPASHRFIIHILDNTHMFVQPHVADMIRNAISEF
Sbjct: 1  MVNAIKGMFISCDIPMAQFIINYNASLPASHRFIIHILDNTHMFVQPHVADMIRNAISEF 60

Query: 61 RDQISYEKPT 71
          R+QISYEKPT
Sbjct: 61 REQISYEKPT 70

[Close]
BLAST of Pay0013251 vs. ExPASy TrEMBL
Match: A0A6J1L2N1 (RNA polymerase II transcription factor B subunit 5 isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111498544 PE=3 SV=1)

HSP 1 Score: 135.6 bits (340), Expect = 8.1e-29
Identity = 64/70 (91.43%), Postives = 68/70 (97.14%), Query Frame = 0 

Query: 1  MVNAIKGMFISCDVPMAQFIINYNASLPASHRFIIHILDNTHMFVQPHVADMIRNAISEF 60
          MVNAIKG+FISCD+PM QFIINYNASLPASHRFIIHILDNTHMFVQP+VADMIRNA+SEF
Sbjct: 1  MVNAIKGLFISCDIPMGQFIINYNASLPASHRFIIHILDNTHMFVQPNVADMIRNAMSEF 60

Query: 61 RDQISYEKPT 71
          RDQ SYEKPT
Sbjct: 61 RDQNSYEKPT 70

[Close]
BLAST of Pay0013251 vs. ExPASy TrEMBL
Match: A0A6J1FX17 (RNA polymerase II transcription factor B subunit 5 OS=Cucurbita moschata OX=3662 GN=LOC111448261 PE=3 SV=1)

HSP 1 Score: 135.6 bits (340), Expect = 8.1e-29
Identity = 64/70 (91.43%), Postives = 68/70 (97.14%), Query Frame = 0 

Query: 1  MVNAIKGMFISCDVPMAQFIINYNASLPASHRFIIHILDNTHMFVQPHVADMIRNAISEF 60
          MVNAIKG+FISCD+PM QFIINYNASLPASHRFIIHILDNTHMFVQP+VADMIRNA+SEF
Sbjct: 1  MVNAIKGLFISCDIPMGQFIINYNASLPASHRFIIHILDNTHMFVQPNVADMIRNAMSEF 60

Query: 61 RDQISYEKPT 71
          RDQ SYEKPT
Sbjct: 61 RDQNSYEKPT 70

[Close]
BLAST of Pay0013251 vs. ExPASy TrEMBL
Match: A0A6J1DFN4 (RNA polymerase II transcription factor B subunit 5 OS=Momordica charantia OX=3673 GN=LOC111020387 PE=3 SV=1)

HSP 1 Score: 131.0 bits (328), Expect = 2.0e-27
Identity = 64/70 (91.43%), Postives = 66/70 (94.29%), Query Frame = 0 

Query: 1  MVNAIKGMFISCDVPMAQFIINYNASLPASHRFIIHILDNTHMFVQPHVADMIRNAISEF 60
          MVNAIKG+FISCDVPMAQFIINYNASLPAS RFIIHILDNTHMFVQP VA MI+NAISEF
Sbjct: 1  MVNAIKGLFISCDVPMAQFIINYNASLPASQRFIIHILDNTHMFVQPQVAGMIQNAISEF 60

Query: 61 RDQISYEKPT 71
          RDQ SYEKPT
Sbjct: 61 RDQNSYEKPT 70

[Close]
BLAST of Pay0013251 vs. NCBI nr
Match: XP_008448918.1 (PREDICTED: RNA polymerase II transcription factor B subunit 5 [Cucumis melo] >XP_008448919.1 PREDICTED: RNA polymerase II transcription factor B subunit 5 [Cucumis melo])

HSP 1 Score: 145.2 bits (365), Expect = 2.1e-31
Identity = 70/70 (100.00%), Postives = 70/70 (100.00%), Query Frame = 0 

Query: 1  MVNAIKGMFISCDVPMAQFIINYNASLPASHRFIIHILDNTHMFVQPHVADMIRNAISEF 60
          MVNAIKGMFISCDVPMAQFIINYNASLPASHRFIIHILDNTHMFVQPHVADMIRNAISEF
Sbjct: 1  MVNAIKGMFISCDVPMAQFIINYNASLPASHRFIIHILDNTHMFVQPHVADMIRNAISEF 60

Query: 61 RDQISYEKPT 71
          RDQISYEKPT
Sbjct: 61 RDQISYEKPT 70

[Close]
BLAST of Pay0013251 vs. NCBI nr
Match: XP_004147953.1 (general transcription and DNA repair factor IIH subunit TFB5 [Cucumis sativus] >KGN55924.1 hypothetical protein Csa_011761 [Cucumis sativus])

HSP 1 Score: 143.3 bits (360), Expect = 8.0e-31
Identity = 68/70 (97.14%), Postives = 70/70 (100.00%), Query Frame = 0 

Query: 1  MVNAIKGMFISCDVPMAQFIINYNASLPASHRFIIHILDNTHMFVQPHVADMIRNAISEF 60
          MVNAIKGMFISCD+PMAQFIINYNASLPASHRFIIHILDNTHMFVQPHVADMIRNAISEF
Sbjct: 1  MVNAIKGMFISCDIPMAQFIINYNASLPASHRFIIHILDNTHMFVQPHVADMIRNAISEF 60

Query: 61 RDQISYEKPT 71
          R+QISYEKPT
Sbjct: 61 REQISYEKPT 70

[Close]
BLAST of Pay0013251 vs. NCBI nr
Match: XP_038876808.1 (general transcription and DNA repair factor IIH subunit TFB5 [Benincasa hispida] >XP_038876809.1 general transcription and DNA repair factor IIH subunit TFB5 [Benincasa hispida])

HSP 1 Score: 142.5 bits (358), Expect = 1.4e-30
Identity = 68/70 (97.14%), Postives = 69/70 (98.57%), Query Frame = 0 

Query: 1  MVNAIKGMFISCDVPMAQFIINYNASLPASHRFIIHILDNTHMFVQPHVADMIRNAISEF 60
          MVNAIKG+FISCDVPMAQFIINYNASLP SHRFIIHILDNTHMFVQPHVADMIRNAISEF
Sbjct: 1  MVNAIKGLFISCDVPMAQFIINYNASLPTSHRFIIHILDNTHMFVQPHVADMIRNAISEF 60

Query: 61 RDQISYEKPT 71
          RDQISYEKPT
Sbjct: 61 RDQISYEKPT 70

[Close]
BLAST of Pay0013251 vs. NCBI nr
Match: KAG6596831.1 (General transcription and DNA repair factor IIH subunit TFB5, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 135.6 bits (340), Expect = 1.7e-28
Identity = 64/70 (91.43%), Postives = 68/70 (97.14%), Query Frame = 0 

Query: 1   MVNAIKGMFISCDVPMAQFIINYNASLPASHRFIIHILDNTHMFVQPHVADMIRNAISEF 60
           MVNAIKG+FISCD+PM QFIINYNASLPASHRFIIHILDNTHMFVQP+VADMIRNA+SEF
Sbjct: 185 MVNAIKGLFISCDIPMGQFIINYNASLPASHRFIIHILDNTHMFVQPNVADMIRNAMSEF 244

Query: 61  RDQISYEKPT 71
           RDQ SYEKPT
Sbjct: 245 RDQNSYEKPT 254

[Close]
BLAST of Pay0013251 vs. NCBI nr
Match: XP_022943513.1 (RNA polymerase II transcription factor B subunit 5 [Cucurbita moschata] >XP_022943520.1 RNA polymerase II transcription factor B subunit 5 [Cucurbita moschata] >XP_023005606.1 RNA polymerase II transcription factor B subunit 5 isoform X1 [Cucurbita maxima] >XP_023005608.1 RNA polymerase II transcription factor B subunit 5 isoform X1 [Cucurbita maxima])

HSP 1 Score: 135.6 bits (340), Expect = 1.7e-28
Identity = 64/70 (91.43%), Postives = 68/70 (97.14%), Query Frame = 0 

Query: 1  MVNAIKGMFISCDVPMAQFIINYNASLPASHRFIIHILDNTHMFVQPHVADMIRNAISEF 60
          MVNAIKG+FISCD+PM QFIINYNASLPASHRFIIHILDNTHMFVQP+VADMIRNA+SEF
Sbjct: 1  MVNAIKGLFISCDIPMGQFIINYNASLPASHRFIIHILDNTHMFVQPNVADMIRNAMSEF 60

Query: 61 RDQISYEKPT 71
          RDQ SYEKPT
Sbjct: 61 RDQNSYEKPT 70

[Close]
BLAST of Pay0013251 vs. TAIR 10
Match: AT1G12400.1 (Nucleotide excision repair, TFIIH, subunit TTDA )

HSP 1 Score: 115.2 bits (287), Expect = 2.2e-26
Identity = 51/70 (72.86%), Postives = 62/70 (88.57%), Query Frame = 0 

Query: 1  MVNAIKGMFISCDVPMAQFIINYNASLPASHRFIIHILDNTHMFVQPHVADMIRNAISEF 60
          MVNAIKG+F+SCD+PM QFI+N N S+P S +FIIH+LD+TH+FVQPHV  MIR+AIS+F
Sbjct: 1  MVNAIKGVFVSCDIPMTQFIVNMNNSMPPSQKFIIHVLDSTHLFVQPHVEQMIRSAISDF 60

Query: 61 RDQISYEKPT 71
          RDQ SYEKPT
Sbjct: 61 RDQNSYEKPT 70

[Close]
BLAST of Pay0013251 vs. TAIR 10
Match: AT1G62886.1 (Nucleotide excision repair, TFIIH, subunit TTDA )

HSP 1 Score: 89.0 bits (219), Expect = 1.7e-18
Identity = 44/70 (62.86%), Postives = 56/70 (80.00%), Query Frame = 0 

Query: 1  MVNAIKGMFISCDVPMAQFIINYNASLPASHRFIIHI--LDNTHMFVQPHVADMIRNAIS 60
          MVN+IKG+FISCDVPMAQFI + N SLPAS +FII +  LD T MFV+P+  +MIR+A+ 
Sbjct: 1  MVNSIKGVFISCDVPMAQFIAHLNNSLPASQKFIIQVLKLDTTSMFVKPYAEEMIRDAVI 60

Query: 61 EFRDQISYEK 69
          +FRD+ SY K
Sbjct: 61 KFRDENSYAK 70

The following BLAST results are available for this feature:
BLAST of Pay0013251 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q6NNM03.1e-2572.86General transcription and DNA repair factor IIH subunit TFB5 OS=Arabidopsis thal... [more]
Q5ZKH08.4e-0737.88General transcription factor IIH subunit 5 OS=Gallus gallus OX=9031 GN=GTF2H5 PE... [more]
Q2T9Z52.4e-0634.85General transcription factor IIH subunit 5 OS=Bos taurus OX=9913 GN=GTF2H5 PE=3 ... [more]
Q6ZYL42.4e-0634.85General transcription factor IIH subunit 5 OS=Homo sapiens OX=9606 GN=GTF2H5 PE=... [more]
Q8K2X85.5e-0633.33General transcription factor IIH subunit 5 OS=Mus musculus OX=10090 GN=Gtf2h5 PE... [more]
BLAST of Pay0013251 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A1S3BK871.0e-31100.00RNA polymerase II transcription factor B subunit 5 OS=Cucumis melo OX=3656 GN=LO... [more]
A0A0A0L4F53.9e-3197.14Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G036500 PE=3 SV=1[more]
A0A6J1L2N18.1e-2991.43RNA polymerase II transcription factor B subunit 5 isoform X1 OS=Cucurbita maxim... [more]
A0A6J1FX178.1e-2991.43RNA polymerase II transcription factor B subunit 5 OS=Cucurbita moschata OX=3662... [more]
A0A6J1DFN42.0e-2791.43RNA polymerase II transcription factor B subunit 5 OS=Momordica charantia OX=367... [more]
BLAST of Pay0013251 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_008448918.12.1e-31100.00PREDICTED: RNA polymerase II transcription factor B subunit 5 [Cucumis melo] >XP... [more]
XP_004147953.18.0e-3197.14general transcription and DNA repair factor IIH subunit TFB5 [Cucumis sativus] >... [more]
XP_038876808.11.4e-3097.14general transcription and DNA repair factor IIH subunit TFB5 [Benincasa hispida]... [more]
KAG6596831.11.7e-2891.43General transcription and DNA repair factor IIH subunit TFB5, partial [Cucurbita... [more]
XP_022943513.11.7e-2891.43RNA polymerase II transcription factor B subunit 5 [Cucurbita moschata] >XP_0229... [more]
BLAST of Pay0013251 vs. TAIR 10
Match NameE-valueIdentityDescription
AT1G12400.12.2e-2672.86Nucleotide excision repair, TFIIH, subunit TTDA [more]
AT1G62886.11.7e-1862.86Nucleotide excision repair, TFIIH, subunit TTDA [more]
InterPro
Analysis Name: InterPro Annotations of Melon (Payzawat) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR009400TFIIH subunit TTDA/Tfb5SMARTSM01395Tbf5_2coord: 1..68
e-value: 1.2E-32
score: 124.5
IPR009400TFIIH subunit TTDA/Tfb5PFAMPF06331Tfb5coord: 1..68
e-value: 1.6E-26
score: 92.1
IPR009400TFIIH subunit TTDA/Tfb5PANTHERPTHR28580GENERAL TRANSCRIPTION FACTOR IIH SUBUNIT 5coord: 1..70
IPR035935TFB5-like superfamilyGENE3D3.30.70.1220coord: 1..68
e-value: 7.6E-26
score: 91.8
IPR035935TFB5-like superfamilySUPERFAMILY142897TFB5-likecoord: 6..69
NoneNo IPR availablePANTHERPTHR28580:SF1GENERAL TRANSCRIPTION FACTOR IIH SUBUNIT 5coord: 1..70

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Pay0013251.1Pay0013251.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006294 nucleotide-excision repair, preincision complex assembly
biological_process GO:0070816 phosphorylation of RNA polymerase II C-terminal domain
biological_process GO:0006367 transcription initiation from RNA polymerase II promoter
biological_process GO:0006289 nucleotide-excision repair
cellular_component GO:0005669 transcription factor TFIID complex
cellular_component GO:0000439 transcription factor TFIIH core complex
cellular_component GO:0005675 transcription factor TFIIH holo complex