
Pay0013251 (gene) Melon (Payzawat) v1
Overview
Sequences
The following sequences are available for this feature:
Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.GGACACTCTTTGTACAATCCCATCGAGGATGAAGACTAGGAGCAAACAAAATTCGAGAGAAACTATAAATACAAGAGTAAGTTAATTAGACTAATCGAAGGTATTTTCAAATGAACCAAAATATATGAAATATACATTGGGAGTCTGTGTTTAAGAGAACCTCTAAAGAAAAGAAAGAAAAGGTCTTTCTTCCCGTCGGCCACACTCTCTCGCTTGATCGCACAGCAAGGCCATCCCCCCATCTCCGATCGTTCTGCTGCCGGCCGGCCAGTCGTGTAGAATTGCCAGCAGTCCGCCGGAGGTAAGGTTTCTTTCTCTTTCTCTCTCTCTCTCATCATTTTTCGAGCTTCAATTGAAAATATGATCTATTGCCTTCCAATTTTCAATCGGCACTACGACAATAGGTTTCTTCTCATTCCCTAACCCTAGAATAGATTTATTAGCCATGAAATGATTAATCTGAAAATTGACCTTGGAATGCTTCTCTACTGCCGTCTTTATTAAGAATGAGAAGAAATTAAAGTTTCATAAGTTTCGAAGGAAGATGATTTAGAACACTTCAACTAGAAATCTCTTCTATAACGAGGGCTGCCTTAGAAGCTTGAAGATTCTTCTCATACTTCCTAAGAAGATCCTTTTTCATAGACTAGAAAGTGAGCCAGCCTTGTTTATTGATTAATCAATTGAAATTGGAATGTAGGGACTGAGTTTCAGTTAAATTTGTTCTGCTGCTGTTTGAGGGACGGCGTTTTTGACATCATGGTTAATGCTATTAAAGGGATGTTCATCTCCTGGTAAAATGCCTTCTTCTGCATTACTTGAAAGATAGATATCTATTTTTGGGTGTACTTTCTTCTGTTTGATTATGGAGTTTTGTTTCCTTCTGTTAGTTGTTTCGTTGATCTCTTTGGAATTGCTATGATATTTGAACGACACAGCTTCTACGAGACTAGAGACTTCAATTGCGATTTTGTTTATTATTTCTCTTGTTTGGTTATGTTCAACTTCAATCTTTCTTCCCCCCTTCCCCGTTTTTCTTTATGATCTCTTCTGATTACTGTAATAGAGTTTGTGATTATTATGACAGTTTAAATGGTGGAGCTTCTTATAATTCTTAGAAATTTCACTGGGAGTCTACTAATACTTGGGGCTATAAGATTCTTCTTTCTTTCTTTTTCCTCAGTACTTGTCGGATGATAATCTCGTCTTTGGACTTGGTATGACAATCGAAATGGCTTCACTTTTAAAAGACTTCAAACTTGCATTGTGATATTGTTTGGTTACTTGGGATTTTGTTGGTCTTTCTTTTTCTCTCCCTGATTTTTAAATGATTGTTTCTAAACGTTGGGCTAGAGTTTGGCATGGAGTGGAGTTGTTTAGTTTTGGATATGAAATCAATGTTTTTTAGTTATGGGAACCATAGTGGGTCAGGGTCTAAGAACTCGTTAAGCCAAACGAGAAGCAGAGTTAGCAACTCCATTCCCCCAACTCCGACTCCTTGGGTCAAACATGCCTTTATGTGATCATTATGTCATTCTAAAGGAAAGCTTTGATGATGTCTACCAATACTTGGGGTCGTGTTCTCTTCTTCTCTCTCCCCCTGCTCCTCCCTAGTCATTGTTGGATGATCTCTTTTGAACACTATGATAGGCCTTTAGAATTAGTACGACAATCAAAATGACAACACTTTTAGAAGACTCGAAACTTTGTGATATCGTTTACCATTTGGGATCTTGTTCATTTTTTTCTCCCTGTTCTGTTGATGATTATATTCTCTTCTAAACATTGGAATAGGTCACTGGGATGTTGGTACGACTTTTGAGTTATTGTTTCTTATTCAAATAACGAGGCACAATGACCTTGGCAGTTATCCATTTTGCAATGATGTGGTAGAATTTGTTATTAGCAGCAGTTCGTATAGCTTGAAATATCTTTGTGTATTCTATCATACACCATTTGTGAACACGGTAAATGGTTTTTGATATGCATTTGATGTTGCCTTCCTTTCATCTTTAATTTGCAACTTTTGGCAAAACTTCATGCTAGCTTTACTAAGGGGGGATTGGATTGGGAGAAAATGCAAAACTTCTTGCTTTTCAGGATGAATAGAATTGTTGGCATTTTCTTGTGTTAAGATAAATTAACTTCTTCCTTTATGCAGTGACGTACCTATGGCACAATTTATCATCAATTACAATGCCTCCTTGCCTGCATCCCATAGATTTATAATCCATATACTGGATAACACTCACATGTTTGTGCAACCCCATGTAGCTGACATGATTCGGAACGCCATCTCAGAATTTCGAGATCAGATTTCTTATGAGAAACCTACTTGAGCCATGTTGTTAATCGAAGTTTCACTATATAATTGTATTTTTTTTTTTTTTTTTGGAGTTATAGATTTTGCTTCTAAAATTTATTGTGCATTTAAACAGTTTTACTTTGTAGTGATGTCTCTCCACTATGCAATGTATATCATCTGACTTGAAGATCTAAAATGGCAGAGACTGGTCATTTTTAAGGTGGACACCAAATTTAAAATAATATATTTCTCTTTAAAAAGG GGACACTCTTTGTACAATCCCATCGAGGATGAAGACTAGGAGCAAACAAAATTCGAGAGAAACTATAAATACAAGAGTAAGTTAATTAGACTAATCGAAGGTATTTTCAAATGAACCAAAATATATGAAATATACATTGGGAGTCTGTGTTTAAGAGAACCTCTAAAGAAAAGAAAGAAAAGGTCTTTCTTCCCGTCGGCCACACTCTCTCGCTTGATCGCACAGCAAGGCCATCCCCCCATCTCCGATCGTTCTGCTGCCGGCCGGCCAGTCGTGTAGAATTGCCAGCAGTCCGCCGGAGGGACTGAGTTTCAGTTAAATTTGTTCTGCTGCTGTTTGAGGGACGGCGTTTTTGACATCATGGTTAATGCTATTAAAGGGATGTTCATCTCCTGTGACGTACCTATGGCACAATTTATCATCAATTACAATGCCTCCTTGCCTGCATCCCATAGATTTATAATCCATATACTGGATAACACTCACATGTTTGTGCAACCCCATGTAGCTGACATGATTCGGAACGCCATCTCAGAATTTCGAGATCAGATTTCTTATGAGAAACCTACTTGAGCCATGTTGTTAATCGAAGTTTCACTATATAATTGTATTTTTTTTTTTTTTTTTGGAGTTATAGATTTTGCTTCTAAAATTTATTGTGCATTTAAACAGTTTTACTTTGTAGTGATGTCTCTCCACTATGCAATGTATATCATCTGACTTGAAGATCTAAAATGGCAGAGACTGGTCATTTTTAAGGTGGACACCAAATTTAAAATAATATATTTCTCTTTAAAAAGG ATGGTTAATGCTATTAAAGGGATGTTCATCTCCTGTGACGTACCTATGGCACAATTTATCATCAATTACAATGCCTCCTTGCCTGCATCCCATAGATTTATAATCCATATACTGGATAACACTCACATGTTTGTGCAACCCCATGTAGCTGACATGATTCGGAACGCCATCTCAGAATTTCGAGATCAGATTTCTTATGAGAAACCTACTTGA MVNAIKGMFISCDVPMAQFIINYNASLPASHRFIIHILDNTHMFVQPHVADMIRNAISEFRDQISYEKPT Homology
BLAST of Pay0013251 vs. ExPASy Swiss-Prot
Match: Q6NNM0 (General transcription and DNA repair factor IIH subunit TFB5 OS=Arabidopsis thaliana OX=3702 GN=TFB5 PE=3 SV=1) HSP 1 Score: 115.2 bits (287), Expect = 3.1e-25 Identity = 51/70 (72.86%), Postives = 62/70 (88.57%), Query Frame = 0
BLAST of Pay0013251 vs. ExPASy Swiss-Prot
Match: Q5ZKH0 (General transcription factor IIH subunit 5 OS=Gallus gallus OX=9031 GN=GTF2H5 PE=3 SV=1) HSP 1 Score: 53.9 bits (128), Expect = 8.4e-07 Identity = 25/66 (37.88%), Postives = 38/66 (57.58%), Query Frame = 0
BLAST of Pay0013251 vs. ExPASy Swiss-Prot
Match: Q2T9Z5 (General transcription factor IIH subunit 5 OS=Bos taurus OX=9913 GN=GTF2H5 PE=3 SV=1) HSP 1 Score: 52.4 bits (124), Expect = 2.4e-06 Identity = 23/66 (34.85%), Postives = 40/66 (60.61%), Query Frame = 0
BLAST of Pay0013251 vs. ExPASy Swiss-Prot
Match: Q6ZYL4 (General transcription factor IIH subunit 5 OS=Homo sapiens OX=9606 GN=GTF2H5 PE=1 SV=1) HSP 1 Score: 52.4 bits (124), Expect = 2.4e-06 Identity = 23/66 (34.85%), Postives = 40/66 (60.61%), Query Frame = 0
BLAST of Pay0013251 vs. ExPASy Swiss-Prot
Match: Q8K2X8 (General transcription factor IIH subunit 5 OS=Mus musculus OX=10090 GN=Gtf2h5 PE=1 SV=1) HSP 1 Score: 51.2 bits (121), Expect = 5.5e-06 Identity = 22/66 (33.33%), Postives = 40/66 (60.61%), Query Frame = 0
BLAST of Pay0013251 vs. ExPASy TrEMBL
Match: A0A1S3BK87 (RNA polymerase II transcription factor B subunit 5 OS=Cucumis melo OX=3656 GN=LOC103490941 PE=3 SV=1) HSP 1 Score: 145.2 bits (365), Expect = 1.0e-31 Identity = 70/70 (100.00%), Postives = 70/70 (100.00%), Query Frame = 0
BLAST of Pay0013251 vs. ExPASy TrEMBL
Match: A0A0A0L4F5 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G036500 PE=3 SV=1) HSP 1 Score: 143.3 bits (360), Expect = 3.9e-31 Identity = 68/70 (97.14%), Postives = 70/70 (100.00%), Query Frame = 0
BLAST of Pay0013251 vs. ExPASy TrEMBL
Match: A0A6J1L2N1 (RNA polymerase II transcription factor B subunit 5 isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111498544 PE=3 SV=1) HSP 1 Score: 135.6 bits (340), Expect = 8.1e-29 Identity = 64/70 (91.43%), Postives = 68/70 (97.14%), Query Frame = 0
BLAST of Pay0013251 vs. ExPASy TrEMBL
Match: A0A6J1FX17 (RNA polymerase II transcription factor B subunit 5 OS=Cucurbita moschata OX=3662 GN=LOC111448261 PE=3 SV=1) HSP 1 Score: 135.6 bits (340), Expect = 8.1e-29 Identity = 64/70 (91.43%), Postives = 68/70 (97.14%), Query Frame = 0
BLAST of Pay0013251 vs. ExPASy TrEMBL
Match: A0A6J1DFN4 (RNA polymerase II transcription factor B subunit 5 OS=Momordica charantia OX=3673 GN=LOC111020387 PE=3 SV=1) HSP 1 Score: 131.0 bits (328), Expect = 2.0e-27 Identity = 64/70 (91.43%), Postives = 66/70 (94.29%), Query Frame = 0
BLAST of Pay0013251 vs. NCBI nr
Match: XP_008448918.1 (PREDICTED: RNA polymerase II transcription factor B subunit 5 [Cucumis melo] >XP_008448919.1 PREDICTED: RNA polymerase II transcription factor B subunit 5 [Cucumis melo]) HSP 1 Score: 145.2 bits (365), Expect = 2.1e-31 Identity = 70/70 (100.00%), Postives = 70/70 (100.00%), Query Frame = 0
BLAST of Pay0013251 vs. NCBI nr
Match: XP_004147953.1 (general transcription and DNA repair factor IIH subunit TFB5 [Cucumis sativus] >KGN55924.1 hypothetical protein Csa_011761 [Cucumis sativus]) HSP 1 Score: 143.3 bits (360), Expect = 8.0e-31 Identity = 68/70 (97.14%), Postives = 70/70 (100.00%), Query Frame = 0
BLAST of Pay0013251 vs. NCBI nr
Match: XP_038876808.1 (general transcription and DNA repair factor IIH subunit TFB5 [Benincasa hispida] >XP_038876809.1 general transcription and DNA repair factor IIH subunit TFB5 [Benincasa hispida]) HSP 1 Score: 142.5 bits (358), Expect = 1.4e-30 Identity = 68/70 (97.14%), Postives = 69/70 (98.57%), Query Frame = 0
BLAST of Pay0013251 vs. NCBI nr
Match: KAG6596831.1 (General transcription and DNA repair factor IIH subunit TFB5, partial [Cucurbita argyrosperma subsp. sororia]) HSP 1 Score: 135.6 bits (340), Expect = 1.7e-28 Identity = 64/70 (91.43%), Postives = 68/70 (97.14%), Query Frame = 0
BLAST of Pay0013251 vs. NCBI nr
Match: XP_022943513.1 (RNA polymerase II transcription factor B subunit 5 [Cucurbita moschata] >XP_022943520.1 RNA polymerase II transcription factor B subunit 5 [Cucurbita moschata] >XP_023005606.1 RNA polymerase II transcription factor B subunit 5 isoform X1 [Cucurbita maxima] >XP_023005608.1 RNA polymerase II transcription factor B subunit 5 isoform X1 [Cucurbita maxima]) HSP 1 Score: 135.6 bits (340), Expect = 1.7e-28 Identity = 64/70 (91.43%), Postives = 68/70 (97.14%), Query Frame = 0
BLAST of Pay0013251 vs. TAIR 10
Match: AT1G12400.1 (Nucleotide excision repair, TFIIH, subunit TTDA ) HSP 1 Score: 115.2 bits (287), Expect = 2.2e-26 Identity = 51/70 (72.86%), Postives = 62/70 (88.57%), Query Frame = 0
BLAST of Pay0013251 vs. TAIR 10
Match: AT1G62886.1 (Nucleotide excision repair, TFIIH, subunit TTDA ) HSP 1 Score: 89.0 bits (219), Expect = 1.7e-18 Identity = 44/70 (62.86%), Postives = 56/70 (80.00%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Melon (Payzawat) v1
Date Performed: 2021-10-25
Relationships
The following mRNA feature(s) are a part of this gene:
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
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