Pay0013145 (gene) Melon (Payzawat) v1

Overview


Name	Pay0013145
Type	gene
Organism	Cucumis melo L. var. inodorus cv. Payzawat (Melon (Payzawat) v1)
Description	Retrovirus-related Pol polyprotein from transposon TNT 1-94
Location	chr10: 14289512 .. 14290280 (+)
RNA-Seq Expression	Pay0013145
Synteny	Pay0013145

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexonpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGACTTCGTCCAGAATATGAATCTGTTAGGGCTGCCTTGTTACACCGCAGTCCCTTGCCCTCATTGGATGCTGCTATTCAAGAAATATTATTTGAAGAAAAACGTCTTGGCATCAATCTCTCTAAACATTCTGATGTTGTTCTTGCCAACACTTATTCACCACCTGGAGCATCAAGCACATTTTGTAAGAATTGTAAGCTCATTGGTCATAAATTTATTGATTGTCCTAAAAACCAGGTCATATTCTGGATAATTGTCCCATAAAACCACCTCGACCTCAAAGCTATTCTGCAAGAGCAAAGAACTTCACTAAACCCAAGAACTCCTCTGTTATTGCTGCTACTTCAGATAATCCTACCACCCCCCAGTTTCAGATAAGTGATCTCCAAAGTTTGCTAAATCTGTTAATTTCATCATCTTCCTCTGCACTTGCCGTCTCACCAGGTAATCGATGGCTTCTTGACTCTGCCTGTTGCAATTATATGACATCTAATTATTCTTTTATGAATACTCCTAGTCTTGCTAAATCTTTACCTCCCATTTATGCTGTTGATGGCAATTGTATGAATATCACCCACATTGGCACCGTTAATACTCCCAATCCTCATACTTACTGTGTCCCAAACTTAACCTTTAATCTAGTATATGTTGGTCAATTGTGCGACCTTGGCTTAGCTGTCTCTTTTTCTCCTAATGGTTGTCAGGTTCAGGATTCGCAGACGGGACAGACGATTGGGACGGGTCGCAAAGTGGGAAGATTGTTTGA

mRNA sequence

ATGGGACTTCGTCCAGAATATGAATCTGTTAGGGCTGCCTTGTTACACCGCAGTCCCTTGCCCTCATTGGATGCTGCTATTCAAGAAATATTATTTGAAGAAAAACGTCTTGGCATCAATCTCTCTAAACATTCTGATGTTGTTCTTGCCAACACTTATTCACCACCTGGAGCATCAAGCACATTTTGTAAGAATTGTAAGCTCATTGGTCATATTCTGGATAATTGTCCCATAAAACCACCTCGACCTCAAAGCTATTCTGCAAGAGCAAAGAACTTCACTAAACCCAAGAACTCCTCTGTTATTGCTGCTACTTCAGATAATCCTACCACCCCCCAGTTTCAGATAAGTGATCTCCAAAGTTTGCTAAATCTGTTAATTTCATCATCTTCCTCTGCACTTGCCGTCTCACCAGGTTCAGGATTCGCAGACGGGACAGACGATTGGGACGGGTCGCAAAGTGGGAAGATTGTTTGA

Coding sequence (CDS)

ATGGGACTTCGTCCAGAATATGAATCTGTTAGGGCTGCCTTGTTACACCGCAGTCCCTTGCCCTCATTGGATGCTGCTATTCAAGAAATATTATTTGAAGAAAAACGTCTTGGCATCAATCTCTCTAAACATTCTGATGTTGTTCTTGCCAACACTTATTCACCACCTGGAGCATCAAGCACATTTTGTAAGAATTGTAAGCTCATTGGTCATATTCTGGATAATTGTCCCATAAAACCACCTCGACCTCAAAGCTATTCTGCAAGAGCAAAGAACTTCACTAAACCCAAGAACTCCTCTGTTATTGCTGCTACTTCAGATAATCCTACCACCCCCCAGTTTCAGATAAGTGATCTCCAAAGTTTGCTAAATCTGTTAATTTCATCATCTTCCTCTGCACTTGCCGTCTCACCAGGTTCAGGATTCGCAGACGGGACAGACGATTGGGACGGGTCGCAAAGTGGGAAGATTGTTTGA

Protein sequence

MGLRPEYESVRAALLHRSPLPSLDAAIQEILFEEKRLGINLSKHSDVVLANTYSPPGASSTFCKNCKLIGHILDNCPIKPPRPQSYSARAKNFTKPKNSSVIAATSDNPTTPQFQISDLQSLLNLLISSSSSALAVSPGSGFADGTDDWDGSQSGKIV

Homology

[Close]

BLAST of Pay0013145 vs. ExPASy TrEMBL
Match: A0A1S4E559 (uncharacterized protein LOC107992140 OS=Cucumis melo OX=3656 GN=LOC107992140 PE=4 SV=1)

HSP 1 Score: 298.9 bits (764), Expect = 1.3e-77
Identity = 156/176 (88.64%), Postives = 157/176 (89.20%), Query Frame = 0


Query: 1   MGLRPEYESVRAALLHRSPLPSLDAAIQEILFEEKRLGINLSKHSDVVLANTYSPPGASS 60
           MGLRPEYESVRAALLHRSPLPSLDAAIQEILFEEKRLGINLSKHSDVVLANTYSPPGASS
Sbjct: 1   MGLRPEYESVRAALLHRSPLPSLDAAIQEILFEEKRLGINLSKHSDVVLANTYSPPGASS 60

Query: 61  TFCKNCKLI------------------GHILDNCPIKPPRPQSYSARAKNFTKPKNSSVI 120
           TFCKNCKLI                  GHILDNCPIKPPRPQSYSARAKNFTKP+NSSVI
Sbjct: 61  TFCKNCKLIGHKFIDCPKIECRYCHKPGHILDNCPIKPPRPQSYSARAKNFTKPRNSSVI 120

Query: 121 AATSDNPTTPQFQISDLQSLLNLLISSSSSALAVSPGSGFADGTDDWDGSQSGKIV 159
           AATSDNPTTPQFQISDLQSLLNLLISSSSSALAVSP SGFADGTDDWDGSQSGKIV
Sbjct: 121 AATSDNPTTPQFQISDLQSLLNLLISSSSSALAVSPSSGFADGTDDWDGSQSGKIV 176

[Close]

BLAST of Pay0013145 vs. ExPASy TrEMBL
Match: A0A5A7UUZ4 (Zinc finger, CCHC-type OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold339G00140 PE=4 SV=1)

HSP 1 Score: 265.0 bits (676), Expect = 2.0e-67
Identity = 141/176 (80.11%), Postives = 146/176 (82.95%), Query Frame = 0


Query: 1   MGLRPEYESVRAALLHRSPLPSLDAAIQEILFEEKRLGINLSKHSDVVLANTYSPPGASS 60
           MGLRPEYESVRAALLHR+PLPSLDA IQEILFEEKRLGINLSKHSDVVLA+TYSP GASS
Sbjct: 214 MGLRPEYESVRAALLHRNPLPSLDAVIQEILFEEKRLGINLSKHSDVVLASTYSPLGASS 273

Query: 61  TFCKNCKLI------------------GHILDNCPIKPPRPQSYSARAKNFTKPKNSSVI 120
           TFCKN KL                   GHILDNCPIKPPRP+SY  RAKNFTKP+NSSV+
Sbjct: 274 TFCKNRKLTGHKFIDCPKIECRYCHKPGHILDNCPIKPPRPRSYFTRAKNFTKPRNSSVV 333

Query: 121 AATSDNPTTPQFQISDLQSLLNLLISSSSSALAVSPGSGFADGTDDWDGSQSGKIV 159
           AAT DN TTPQFQISDLQSLLN LISSSSSALAVS GSG  DGTDDWDGSQSGKIV
Sbjct: 334 AATLDNSTTPQFQISDLQSLLNQLISSSSSALAVSSGSGSVDGTDDWDGSQSGKIV 389

[Close]

BLAST of Pay0013145 vs. ExPASy TrEMBL
Match: A0A5A7VFE6 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold598G00590 PE=4 SV=1)

HSP 1 Score: 260.4 bits (664), Expect = 4.9e-66
Identity = 137/158 (86.71%), Postives = 139/158 (87.97%), Query Frame = 0


Query: 1   MGLRPEYESVRAALLHRSPLPSLDAAIQEILFEEKRLGINLSKHSDVVLANTYSPPGASS 60
           MGLRPEYESVRAALLHRSPLPSLDAAIQEILFEEKRLGINLSKHSDVVLANTYSPPGASS
Sbjct: 1   MGLRPEYESVRAALLHRSPLPSLDAAIQEILFEEKRLGINLSKHSDVVLANTYSPPGASS 60

Query: 61  TFCKNCKLI------------------GHILDNCPIKPPRPQSYSARAKNFTKPKNSSVI 120
           TFCKNCKLI                  GHILDNCPIKPPRPQSYSARAKNFTKP+NSSVI
Sbjct: 61  TFCKNCKLIGHKFIDCPKIECRYCHKPGHILDNCPIKPPRPQSYSARAKNFTKPRNSSVI 120

Query: 121 AATSDNPTTPQFQISDLQSLLNLLISSSSSALAVSPGS 141
           AATSDNPTTPQFQISDLQSLLNLLISSSSSALAVSP +
Sbjct: 121 AATSDNPTTPQFQISDLQSLLNLLISSSSSALAVSPSN 158

[Close]

BLAST of Pay0013145 vs. ExPASy TrEMBL
Match: A0A5D3BI36 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold180G00360 PE=4 SV=1)

HSP 1 Score: 244.6 bits (623), Expect = 2.8e-61
Identity = 128/158 (81.01%), Postives = 133/158 (84.18%), Query Frame = 0


Query: 1   MGLRPEYESVRAALLHRSPLPSLDAAIQEILFEEKRLGINLSKHSDVVLANTYSPPGASS 60
           MGLRPEYES R ALLHRSPLPSLDAAIQEILFEEKRLGINLSKHSDVVLA+TYSPPGASS
Sbjct: 1   MGLRPEYESARVALLHRSPLPSLDAAIQEILFEEKRLGINLSKHSDVVLASTYSPPGASS 60

Query: 61  TFCKNCKLI------------------GHILDNCPIKPPRPQSYSARAKNFTKPKNSSVI 120
           TFCKNCKL                   GHILDNCPIKPPRP+SYS RAKNFTKP+NSSV+
Sbjct: 61  TFCKNCKLTGHKFIDCPKIECRYCHKPGHILDNCPIKPPRPRSYSTRAKNFTKPRNSSVV 120

Query: 121 AATSDNPTTPQFQISDLQSLLNLLISSSSSALAVSPGS 141
           AAT DNPTTPQFQISDLQSLLN LISSSSSALAVS G+
Sbjct: 121 AATLDNPTTPQFQISDLQSLLNQLISSSSSALAVSSGN 158

[Close]

BLAST of Pay0013145 vs. ExPASy TrEMBL
Match: A0A5A7U9P9 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold355G00970 PE=4 SV=1)

HSP 1 Score: 244.6 bits (623), Expect = 2.8e-61
Identity = 128/158 (81.01%), Postives = 133/158 (84.18%), Query Frame = 0


Query: 1   MGLRPEYESVRAALLHRSPLPSLDAAIQEILFEEKRLGINLSKHSDVVLANTYSPPGASS 60
           MGLRPEYES R ALLHRSPLPSLDAAIQEILFEEKRLGINLSKHSDVVLA+TYSPPGASS
Sbjct: 1   MGLRPEYESARVALLHRSPLPSLDAAIQEILFEEKRLGINLSKHSDVVLASTYSPPGASS 60

Query: 61  TFCKNCKLI------------------GHILDNCPIKPPRPQSYSARAKNFTKPKNSSVI 120
           TFCKNCKL                   GHILDNCPIKPPRP+SYS RAKNFTKP+NSSV+
Sbjct: 61  TFCKNCKLTGHKFIDCPKIECRYCHKPGHILDNCPIKPPRPRSYSTRAKNFTKPRNSSVV 120

Query: 121 AATSDNPTTPQFQISDLQSLLNLLISSSSSALAVSPGS 141
           AAT DNPTTPQFQISDLQSLLN LISSSSSALAVS G+
Sbjct: 121 AATLDNPTTPQFQISDLQSLLNQLISSSSSALAVSSGN 158

[Close]

BLAST of Pay0013145 vs. NCBI nr
Match: XP_016903357.1 (PREDICTED: uncharacterized protein LOC107992140 [Cucumis melo])

HSP 1 Score: 298.9 bits (764), Expect = 2.6e-77
Identity = 156/176 (88.64%), Postives = 157/176 (89.20%), Query Frame = 0


Query: 1   MGLRPEYESVRAALLHRSPLPSLDAAIQEILFEEKRLGINLSKHSDVVLANTYSPPGASS 60
           MGLRPEYESVRAALLHRSPLPSLDAAIQEILFEEKRLGINLSKHSDVVLANTYSPPGASS
Sbjct: 1   MGLRPEYESVRAALLHRSPLPSLDAAIQEILFEEKRLGINLSKHSDVVLANTYSPPGASS 60

Query: 61  TFCKNCKLI------------------GHILDNCPIKPPRPQSYSARAKNFTKPKNSSVI 120
           TFCKNCKLI                  GHILDNCPIKPPRPQSYSARAKNFTKP+NSSVI
Sbjct: 61  TFCKNCKLIGHKFIDCPKIECRYCHKPGHILDNCPIKPPRPQSYSARAKNFTKPRNSSVI 120

Query: 121 AATSDNPTTPQFQISDLQSLLNLLISSSSSALAVSPGSGFADGTDDWDGSQSGKIV 159
           AATSDNPTTPQFQISDLQSLLNLLISSSSSALAVSP SGFADGTDDWDGSQSGKIV
Sbjct: 121 AATSDNPTTPQFQISDLQSLLNLLISSSSSALAVSPSSGFADGTDDWDGSQSGKIV 176

[Close]

BLAST of Pay0013145 vs. NCBI nr
Match: KAA0058547.1 (Zinc finger, CCHC-type [Cucumis melo var. makuwa])

HSP 1 Score: 265.0 bits (676), Expect = 4.1e-67
Identity = 141/176 (80.11%), Postives = 146/176 (82.95%), Query Frame = 0


Query: 1   MGLRPEYESVRAALLHRSPLPSLDAAIQEILFEEKRLGINLSKHSDVVLANTYSPPGASS 60
           MGLRPEYESVRAALLHR+PLPSLDA IQEILFEEKRLGINLSKHSDVVLA+TYSP GASS
Sbjct: 214 MGLRPEYESVRAALLHRNPLPSLDAVIQEILFEEKRLGINLSKHSDVVLASTYSPLGASS 273

Query: 61  TFCKNCKLI------------------GHILDNCPIKPPRPQSYSARAKNFTKPKNSSVI 120
           TFCKN KL                   GHILDNCPIKPPRP+SY  RAKNFTKP+NSSV+
Sbjct: 274 TFCKNRKLTGHKFIDCPKIECRYCHKPGHILDNCPIKPPRPRSYFTRAKNFTKPRNSSVV 333

Query: 121 AATSDNPTTPQFQISDLQSLLNLLISSSSSALAVSPGSGFADGTDDWDGSQSGKIV 159
           AAT DN TTPQFQISDLQSLLN LISSSSSALAVS GSG  DGTDDWDGSQSGKIV
Sbjct: 334 AATLDNSTTPQFQISDLQSLLNQLISSSSSALAVSSGSGSVDGTDDWDGSQSGKIV 389

[Close]

BLAST of Pay0013145 vs. NCBI nr
Match: KAA0067102.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa] >TYJ97495.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa])

HSP 1 Score: 260.4 bits (664), Expect = 1.0e-65
Identity = 137/158 (86.71%), Postives = 139/158 (87.97%), Query Frame = 0


Query: 1   MGLRPEYESVRAALLHRSPLPSLDAAIQEILFEEKRLGINLSKHSDVVLANTYSPPGASS 60
           MGLRPEYESVRAALLHRSPLPSLDAAIQEILFEEKRLGINLSKHSDVVLANTYSPPGASS
Sbjct: 1   MGLRPEYESVRAALLHRSPLPSLDAAIQEILFEEKRLGINLSKHSDVVLANTYSPPGASS 60

Query: 61  TFCKNCKLI------------------GHILDNCPIKPPRPQSYSARAKNFTKPKNSSVI 120
           TFCKNCKLI                  GHILDNCPIKPPRPQSYSARAKNFTKP+NSSVI
Sbjct: 61  TFCKNCKLIGHKFIDCPKIECRYCHKPGHILDNCPIKPPRPQSYSARAKNFTKPRNSSVI 120

Query: 121 AATSDNPTTPQFQISDLQSLLNLLISSSSSALAVSPGS 141
           AATSDNPTTPQFQISDLQSLLNLLISSSSSALAVSP +
Sbjct: 121 AATSDNPTTPQFQISDLQSLLNLLISSSSSALAVSPSN 158

[Close]

BLAST of Pay0013145 vs. NCBI nr
Match: TYJ98155.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa])

HSP 1 Score: 244.6 bits (623), Expect = 5.8e-61
Identity = 128/158 (81.01%), Postives = 133/158 (84.18%), Query Frame = 0


Query: 1   MGLRPEYESVRAALLHRSPLPSLDAAIQEILFEEKRLGINLSKHSDVVLANTYSPPGASS 60
           MGLRPEYES R ALLHRSPLPSLDAAIQEILFEEKRLGINLSKHSDVVLA+TYSPPGASS
Sbjct: 1   MGLRPEYESARVALLHRSPLPSLDAAIQEILFEEKRLGINLSKHSDVVLASTYSPPGASS 60

Query: 61  TFCKNCKLI------------------GHILDNCPIKPPRPQSYSARAKNFTKPKNSSVI 120
           TFCKNCKL                   GHILDNCPIKPPRP+SYS RAKNFTKP+NSSV+
Sbjct: 61  TFCKNCKLTGHKFIDCPKIECRYCHKPGHILDNCPIKPPRPRSYSTRAKNFTKPRNSSVV 120

Query: 121 AATSDNPTTPQFQISDLQSLLNLLISSSSSALAVSPGS 141
           AAT DNPTTPQFQISDLQSLLN LISSSSSALAVS G+
Sbjct: 121 AATLDNPTTPQFQISDLQSLLNQLISSSSSALAVSSGN 158

[Close]

BLAST of Pay0013145 vs. NCBI nr
Match: KAA0050251.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa])

HSP 1 Score: 244.6 bits (623), Expect = 5.8e-61
Identity = 128/158 (81.01%), Postives = 133/158 (84.18%), Query Frame = 0


Query: 1   MGLRPEYESVRAALLHRSPLPSLDAAIQEILFEEKRLGINLSKHSDVVLANTYSPPGASS 60
           MGLRPEYES R ALLHRSPLPSLDAAIQEILFEEKRLGINLSKHSDVVLA+TYSPPGASS
Sbjct: 1   MGLRPEYESARVALLHRSPLPSLDAAIQEILFEEKRLGINLSKHSDVVLASTYSPPGASS 60

Query: 61  TFCKNCKLI------------------GHILDNCPIKPPRPQSYSARAKNFTKPKNSSVI 120
           TFCKNCKL                   GHILDNCPIKPPRP+SYS RAKNFTKP+NSSV+
Sbjct: 61  TFCKNCKLTGHKFIDCPKIECRYCHKPGHILDNCPIKPPRPRSYSTRAKNFTKPRNSSVV 120

Query: 121 AATSDNPTTPQFQISDLQSLLNLLISSSSSALAVSPGS 141
           AAT DNPTTPQFQISDLQSLLN LISSSSSALAVS G+
Sbjct: 121 AATLDNPTTPQFQISDLQSLLNQLISSSSSALAVSSGN 158

The following BLAST results are available for this feature:

BLAST of Pay0013145 vs.


Match Name	E-value	Identity	Description

BLAST of Pay0013145 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S4E559	1.3e-77	88.64	uncharacterized protein LOC107992140 OS=Cucumis melo OX=3656 GN=LOC107992140 PE=...	[more]
A0A5A7UUZ4	2.0e-67	80.11	Zinc finger, CCHC-type OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold3...	[more]
A0A5A7VFE6	4.9e-66	86.71	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var....	[more]
A0A5D3BI36	2.8e-61	81.01	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var....	[more]
A0A5A7U9P9	2.8e-61	81.01	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var....	[more]

BLAST of Pay0013145 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_016903357.1	2.6e-77	88.64	PREDICTED: uncharacterized protein LOC107992140 [Cucumis melo]	[more]
KAA0058547.1	4.1e-67	80.11	Zinc finger, CCHC-type [Cucumis melo var. makuwa]	[more]
KAA0067102.1	1.0e-65	86.71	Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. m...	[more]
TYJ98155.1	5.8e-61	81.01	Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. m...	[more]
KAA0050251.1	5.8e-61	81.01	Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. m...	[more]

BLAST of Pay0013145 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (Payzawat) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 134..158
IPR036875	Zinc finger, CCHC-type superfamily	SUPERFAMILY	57756	Retrovirus zinc finger-like domains	coord: 51..84

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Pay0013145.1	Pay0013145.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015074	DNA integration
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0008270	zinc ion binding