Pay0012989 (gene) Melon (Payzawat) v1

Overview


Name	Pay0012989
Type	gene
Organism	Cucumis melo L. var. inodorus cv. Payzawat (Melon (Payzawat) v1)
Description	Retrotransposon protein
Location	chr02: 7919253 .. 7920382 (-)
RNA-Seq Expression	Pay0012989
Synteny	Pay0012989

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGACAAAGGAACATTCGCAATTCTATGTCATTTACTTCAGACTGTTTCTGGTCTTTTGTCGACCGAGATTGTTAATGTTGAGAAAATGGTAGCAATGTTCTTACACGTTCTTGCCCATGATGTGAAGAGTCGCGTCATTCAAAGGGAATTTGTACTGTCCGATGAGACAGTATCTCAACATTTTAACCTCGTACTATTGGTTGTCGTTCGGCTATATGAGGAGTTGATAAAGAGACATGTTTCGGTAACAAACAACTACAATGATCAACGTTGGAAGTGTTTCGAGGTGGGCATGGTACAAGTTTAATGTATTCAAGCTTTAGGTACGTGGCACTTATTTCGGCGTGTTTATTTCAACCTACAGAATTTCCTTGGTGCGTTAGACGGGACCTACATAAAGGTGAACATCCCCACAGCAGATAGGCCTACATTTAGAACCCATAAGGGAGAAATTGCCACAAACGTACTGGGCGTCTGCAACATGAAAGGGGATTTCGTTTATGTCCTCGCCGGTTGGGAAGGATCCGTCGTAGACTCGTAAATTCTACGTGATGCCCTTGCACGAGAAAATGGACTACAAGTGCCAAAGGGTATTGTTTATTTATAATTAAATTAACGCTCATTTCTACTTACATATTCAAAGCGCATAAACAAATGGTTTTAATAACAAGATATTATTATCTGTGTGATGCGAGTTATCCAAACACAGAGGGATTTCTCGGCCCGTACAGAGGCCAACGGTACCACTTGCAAGAGTGGCGTGGTGCTGGAAATGCACCAAGAAATGCAAAGGAGTACTTCAACATGAAGCACTCTTCGGCAAGGAATGTCATTCAGCGCGCCTTCGGTGTTCTTAAGGGTCGTTGAGCCATTCTTCATGAGAAGTTGTAGTAAACCCTGCAAGTCCAGTATCGCACCATACTAGCATGTTGCTTGCTTCATAATTTGATTAACAGAGAAATGACATATTGTGATGACGTTGATGACGTGGACGAGGGGGACTTCGCGTACGCGACGACCACCACTATAGAAGAAATTCACTACATTGAGATGACAAACGAGTGGTCTCAGTGGCGCGACAAACTAGCTGAATCGATGTTCACAGATTGGCAGTTGCGTAACGCTTAG

mRNA sequence

ATGGACAAAGGAACATTCGCAATTCTATGTCATTTACTTCAGACTGTTTCTGGTCTTTTGTCGACCGAGATTGTTAATGTTGAGAAAATGGTAGCAATGTTCTTACACGTTCTTGCCCATGATGTGAAGAGTCGCGTCATTCAAAGGGAATTTGTACTGTCCGATGAGACAGTATCTCAACATTTTAACCTCGTACTATTGGTTGTCGTTCGGCTATATGAGGAGTTGATAAAGAGACATGTTTCGAATTTCCTTGGTGCGTTAGACGGGACCTACATAAAGGTGAACATCCCCACAGCAGATAGGCCTACATTTAGAACCCATAAGGGAGAAATTGCCACAAACGTACTGGGCGTCTGCAACATGAAAGGGGATTTCGTTTATGTCCTCGCCGGTTGGGAAGGATCCGTCGTAGACTCAGAAATGACATATTGTGATGACGTTGATGACGTGGACGAGGGGGACTTCGCGTACGCGACGACCACCACTATAGAAGAAATTCACTACATTGAGATGACAAACGAGTGGTCTCAGTGGCGCGACAAACTAGCTGAATCGATGTTCACAGATTGGCAGTTGCGTAACGCTTAG

Coding sequence (CDS)

ATGGACAAAGGAACATTCGCAATTCTATGTCATTTACTTCAGACTGTTTCTGGTCTTTTGTCGACCGAGATTGTTAATGTTGAGAAAATGGTAGCAATGTTCTTACACGTTCTTGCCCATGATGTGAAGAGTCGCGTCATTCAAAGGGAATTTGTACTGTCCGATGAGACAGTATCTCAACATTTTAACCTCGTACTATTGGTTGTCGTTCGGCTATATGAGGAGTTGATAAAGAGACATGTTTCGAATTTCCTTGGTGCGTTAGACGGGACCTACATAAAGGTGAACATCCCCACAGCAGATAGGCCTACATTTAGAACCCATAAGGGAGAAATTGCCACAAACGTACTGGGCGTCTGCAACATGAAAGGGGATTTCGTTTATGTCCTCGCCGGTTGGGAAGGATCCGTCGTAGACTCAGAAATGACATATTGTGATGACGTTGATGACGTGGACGAGGGGGACTTCGCGTACGCGACGACCACCACTATAGAAGAAATTCACTACATTGAGATGACAAACGAGTGGTCTCAGTGGCGCGACAAACTAGCTGAATCGATGTTCACAGATTGGCAGTTGCGTAACGCTTAG

Protein sequence

MDKGTFAILCHLLQTVSGLLSTEIVNVEKMVAMFLHVLAHDVKSRVIQREFVLSDETVSQHFNLVLLVVVRLYEELIKRHVSNFLGALDGTYIKVNIPTADRPTFRTHKGEIATNVLGVCNMKGDFVYVLAGWEGSVVDSEMTYCDDVDDVDEGDFAYATTTTIEEIHYIEMTNEWSQWRDKLAESMFTDWQLRNA

Homology

[Close]

BLAST of Pay0012989 vs. ExPASy TrEMBL
Match: A0A1S3BNP1 (uncharacterized protein LOC103492066 OS=Cucumis melo OX=3656 GN=LOC103492066 PE=3 SV=1)

HSP 1 Score: 395.2 bits (1014), Expect = 1.6e-106
Identity = 196/196 (100.00%), Postives = 196/196 (100.00%), Query Frame = 0


Query: 1   MDKGTFAILCHLLQTVSGLLSTEIVNVEKMVAMFLHVLAHDVKSRVIQREFVLSDETVSQ 60
           MDKGTFAILCHLLQTVSGLLSTEIVNVEKMVAMFLHVLAHDVKSRVIQREFVLSDETVSQ
Sbjct: 1   MDKGTFAILCHLLQTVSGLLSTEIVNVEKMVAMFLHVLAHDVKSRVIQREFVLSDETVSQ 60

Query: 61  HFNLVLLVVVRLYEELIKRHVSNFLGALDGTYIKVNIPTADRPTFRTHKGEIATNVLGVC 120
           HFNLVLLVVVRLYEELIKRHVSNFLGALDGTYIKVNIPTADRPTFRTHKGEIATNVLGVC
Sbjct: 61  HFNLVLLVVVRLYEELIKRHVSNFLGALDGTYIKVNIPTADRPTFRTHKGEIATNVLGVC 120

Query: 121 NMKGDFVYVLAGWEGSVVDSEMTYCDDVDDVDEGDFAYATTTTIEEIHYIEMTNEWSQWR 180
           NMKGDFVYVLAGWEGSVVDSEMTYCDDVDDVDEGDFAYATTTTIEEIHYIEMTNEWSQWR
Sbjct: 121 NMKGDFVYVLAGWEGSVVDSEMTYCDDVDDVDEGDFAYATTTTIEEIHYIEMTNEWSQWR 180

Query: 181 DKLAESMFTDWQLRNA 197
           DKLAESMFTDWQLRNA
Sbjct: 181 DKLAESMFTDWQLRNA 196

[Close]

BLAST of Pay0012989 vs. ExPASy TrEMBL
Match: A0A5A7UJ27 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold319G00570 PE=3 SV=1)

HSP 1 Score: 357.5 bits (916), Expect = 3.7e-95
Identity = 193/253 (76.28%), Postives = 193/253 (76.28%), Query Frame = 0


Query: 1   MDKGTFAILCHLLQTVSGLLSTEIVNVEKMVAMFLHVLAHDVKSRVIQREFVLSDETVSQ 60
           MDKGTFAILCHLLQTVSGLLSTEIVNVEKMVAMFLHVLAHDVKSRVIQREFVLSDETVSQ
Sbjct: 40  MDKGTFAILCHLLQTVSGLLSTEIVNVEKMVAMFLHVLAHDVKSRVIQREFVLSDETVSQ 99

Query: 61  HFNLVLLVVVRLYEELIKRHVS--------------NFLGALDGTYIKVNIPTADRPTFR 120
           HFNLVLLVVVRLYEELIKRHVS              NFLGALDGTYIKVNIPTADRPTFR
Sbjct: 100 HFNLVLLVVVRLYEELIKRHVSVTNNYNDQRWKCFENFLGALDGTYIKVNIPTADRPTFR 159

Query: 121 THKGEIATNVLGVCNMKGDFVYVLAGWEGSVVDS-------------------------- 180
           THKGEIATNVLGVCNMKGDFVYVLAGWEGSVVDS                          
Sbjct: 160 THKGEIATNVLGVCNMKGDFVYVLAGWEGSVVDSGISRPVQRPTVPLARVAWCWKCTKKC 219

Query: 181 --------------------EMTYCDDVDDVDEGDFAYATTTTIEEIHYIEMTNEWSQWR 194
                               EMTYCDDVDDVDEGDFAYATTTTIEEIHYIEMTNEWSQWR
Sbjct: 220 KGVLQHEALFGKECHSARLREMTYCDDVDDVDEGDFAYATTTTIEEIHYIEMTNEWSQWR 279

[Close]

BLAST of Pay0012989 vs. ExPASy TrEMBL
Match: A0A5D3CUG9 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold363G00180 PE=3 SV=1)

HSP 1 Score: 283.5 bits (724), Expect = 6.7e-73
Identity = 158/276 (57.25%), Postives = 173/276 (62.68%), Query Frame = 0


Query: 1   MDKGTFAILCHLLQTVSGLLSTEIVNVEKMVAMFLHVLAHDVKSRVIQREFVLSDETVSQ 60
           MD+ TF ILCHLL+ V+GL STEIV+VE+MVAMFLHVLAHDVK+RVIQREFV S ETVS+
Sbjct: 40  MDRRTFTILCHLLRNVAGLSSTEIVDVEEMVAMFLHVLAHDVKNRVIQREFVRSGETVSR 99

Query: 61  HFNLVLLVVVRLYEELIKR-------HVSNFLGALDGTYIKVNIPTADRPTFRTHKGEIA 120
           HFN+VLL VV+LYEELIKR       ++ N LGALDGTYIKVN+P  DR TFRT KGEIA
Sbjct: 100 HFNIVLLAVVQLYEELIKRPVPRLYLNLQNCLGALDGTYIKVNVPVGDRSTFRTRKGEIA 159

Query: 121 TNVLGVCNMKGDFVYVLAGWEGSVVDS--------------------------------- 180
           TNVLGVC+ KGDFVYVLAGWEGS  DS                                 
Sbjct: 160 TNVLGVCDTKGDFVYVLAGWEGSAADSRILRDALSQENGLQVPKGQRYHLQEWRGAANAP 219

Query: 181 ----------------------------------------EMTYCDDVDDVDEGDFAYAT 197
                                                   EMTYC DVDDVDEGD  YAT
Sbjct: 220 TNPNEYFNMKHSSARNVIECAFDVLKGRWAILRGKSYYPLEMTYCKDVDDVDEGDSTYAT 279

[Close]

BLAST of Pay0012989 vs. ExPASy TrEMBL
Match: A0A5A7TW41 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold754G00210 PE=3 SV=1)

HSP 1 Score: 283.5 bits (724), Expect = 6.7e-73
Identity = 158/276 (57.25%), Postives = 173/276 (62.68%), Query Frame = 0


Query: 1   MDKGTFAILCHLLQTVSGLLSTEIVNVEKMVAMFLHVLAHDVKSRVIQREFVLSDETVSQ 60
           MD+ TF ILCHLL+ V+GL STEIV+VE+MVAMFLHVLAHDVK+RVIQREFV S ETVS+
Sbjct: 40  MDRRTFTILCHLLRNVAGLSSTEIVDVEEMVAMFLHVLAHDVKNRVIQREFVRSGETVSR 99

Query: 61  HFNLVLLVVVRLYEELIKR-------HVSNFLGALDGTYIKVNIPTADRPTFRTHKGEIA 120
           HFN+VLL VV+LYEELIKR       ++ N LGALDGTYIKVN+P  DR TFRT KGEIA
Sbjct: 100 HFNIVLLAVVQLYEELIKRPVPRLYLNLQNCLGALDGTYIKVNVPVGDRSTFRTRKGEIA 159

Query: 121 TNVLGVCNMKGDFVYVLAGWEGSVVD---------------------------------- 180
           TNVLGVC+ KGDFVYVLAGWEGS  D                                  
Sbjct: 160 TNVLGVCDTKGDFVYVLAGWEGSAADSRILRDALSQENGLQGFFALYRGQRYHLQEWRGA 219

Query: 181 ---------------------------------------SEMTYCDDVDDVDEGDFAYAT 197
                                                  SEMTYC DVDDVDEGD  YAT
Sbjct: 220 ANAPTNPNEYFNMKHSSARNVIECAFDVLKGRWAILRGKSEMTYCKDVDDVDEGDSTYAT 279

[Close]

BLAST of Pay0012989 vs. ExPASy TrEMBL
Match: A0A5D3BKS9 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1112G00270 PE=3 SV=1)

HSP 1 Score: 280.0 bits (715), Expect = 7.5e-72
Identity = 153/251 (60.96%), Postives = 169/251 (67.33%), Query Frame = 0


Query: 1   MDKGTFAILCHLLQTVSGLLSTEIVNVEKMVAMFLHVLAHDVKSRVIQREFVLSDETVSQ 60
           MDK TFAILCHLL+ V+GL STEIV+VE+MVAMFLHVLAHD+K+RVIQREFV S ETVS+
Sbjct: 40  MDKLTFAILCHLLRNVAGLSSTEIVDVEEMVAMFLHVLAHDMKNRVIQREFVRSGETVSR 99

Query: 61  HFNLVLLVVVRLYEELIKRHV--------------SNFLGALDGTYIKVNIPTADRPTFR 120
           HFN++LLVV+RLYEELIKR V               N LGALD TYIKVN+P  DRPTFR
Sbjct: 100 HFNIILLVVLRLYEELIKRPVPVTSNCNDQRWKCFENCLGALDRTYIKVNVPAGDRPTFR 159

Query: 121 THKGEIATNVLGVCNMKGDFVYVLAGWEGSVVDS-------------------------- 180
           T KGEIA  VLGVC+ KGDF YVLAGWEGS  DS                          
Sbjct: 160 TRKGEIAIYVLGVCDTKGDFAYVLAGWEGSAADSRILRDVLSRENGLQVQKGYYYLCDAG 219

Query: 181 ---------------EMTYCDDVDDVDEGDFAYATTTTIEEIHYIEMTNEWSQWRDKLAE 197
                          EM YC+DVD+ DEGD  YATTT  E+I YIE TNEWSQWRD LAE
Sbjct: 220 YPNAEGFLDPYRGQREMIYCEDVDNEDEGDSTYATTTASEDIQYIETTNEWSQWRDDLAE 279

[Close]

BLAST of Pay0012989 vs. NCBI nr
Match: XP_008450472.1 (PREDICTED: uncharacterized protein LOC103492066 [Cucumis melo])

HSP 1 Score: 395.2 bits (1014), Expect = 3.3e-106
Identity = 196/196 (100.00%), Postives = 196/196 (100.00%), Query Frame = 0


Query: 1   MDKGTFAILCHLLQTVSGLLSTEIVNVEKMVAMFLHVLAHDVKSRVIQREFVLSDETVSQ 60
           MDKGTFAILCHLLQTVSGLLSTEIVNVEKMVAMFLHVLAHDVKSRVIQREFVLSDETVSQ
Sbjct: 1   MDKGTFAILCHLLQTVSGLLSTEIVNVEKMVAMFLHVLAHDVKSRVIQREFVLSDETVSQ 60

Query: 61  HFNLVLLVVVRLYEELIKRHVSNFLGALDGTYIKVNIPTADRPTFRTHKGEIATNVLGVC 120
           HFNLVLLVVVRLYEELIKRHVSNFLGALDGTYIKVNIPTADRPTFRTHKGEIATNVLGVC
Sbjct: 61  HFNLVLLVVVRLYEELIKRHVSNFLGALDGTYIKVNIPTADRPTFRTHKGEIATNVLGVC 120

Query: 121 NMKGDFVYVLAGWEGSVVDSEMTYCDDVDDVDEGDFAYATTTTIEEIHYIEMTNEWSQWR 180
           NMKGDFVYVLAGWEGSVVDSEMTYCDDVDDVDEGDFAYATTTTIEEIHYIEMTNEWSQWR
Sbjct: 121 NMKGDFVYVLAGWEGSVVDSEMTYCDDVDDVDEGDFAYATTTTIEEIHYIEMTNEWSQWR 180

Query: 181 DKLAESMFTDWQLRNA 197
           DKLAESMFTDWQLRNA
Sbjct: 181 DKLAESMFTDWQLRNA 196

[Close]

BLAST of Pay0012989 vs. NCBI nr
Match: KAA0055933.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 357.5 bits (916), Expect = 7.6e-95
Identity = 193/253 (76.28%), Postives = 193/253 (76.28%), Query Frame = 0


Query: 1   MDKGTFAILCHLLQTVSGLLSTEIVNVEKMVAMFLHVLAHDVKSRVIQREFVLSDETVSQ 60
           MDKGTFAILCHLLQTVSGLLSTEIVNVEKMVAMFLHVLAHDVKSRVIQREFVLSDETVSQ
Sbjct: 40  MDKGTFAILCHLLQTVSGLLSTEIVNVEKMVAMFLHVLAHDVKSRVIQREFVLSDETVSQ 99

Query: 61  HFNLVLLVVVRLYEELIKRHVS--------------NFLGALDGTYIKVNIPTADRPTFR 120
           HFNLVLLVVVRLYEELIKRHVS              NFLGALDGTYIKVNIPTADRPTFR
Sbjct: 100 HFNLVLLVVVRLYEELIKRHVSVTNNYNDQRWKCFENFLGALDGTYIKVNIPTADRPTFR 159

Query: 121 THKGEIATNVLGVCNMKGDFVYVLAGWEGSVVDS-------------------------- 180
           THKGEIATNVLGVCNMKGDFVYVLAGWEGSVVDS                          
Sbjct: 160 THKGEIATNVLGVCNMKGDFVYVLAGWEGSVVDSGISRPVQRPTVPLARVAWCWKCTKKC 219

Query: 181 --------------------EMTYCDDVDDVDEGDFAYATTTTIEEIHYIEMTNEWSQWR 194
                               EMTYCDDVDDVDEGDFAYATTTTIEEIHYIEMTNEWSQWR
Sbjct: 220 KGVLQHEALFGKECHSARLREMTYCDDVDDVDEGDFAYATTTTIEEIHYIEMTNEWSQWR 279

[Close]

BLAST of Pay0012989 vs. NCBI nr
Match: TYK14046.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 283.5 bits (724), Expect = 1.4e-72
Identity = 158/276 (57.25%), Postives = 173/276 (62.68%), Query Frame = 0


Query: 1   MDKGTFAILCHLLQTVSGLLSTEIVNVEKMVAMFLHVLAHDVKSRVIQREFVLSDETVSQ 60
           MD+ TF ILCHLL+ V+GL STEIV+VE+MVAMFLHVLAHDVK+RVIQREFV S ETVS+
Sbjct: 40  MDRRTFTILCHLLRNVAGLSSTEIVDVEEMVAMFLHVLAHDVKNRVIQREFVRSGETVSR 99

Query: 61  HFNLVLLVVVRLYEELIKR-------HVSNFLGALDGTYIKVNIPTADRPTFRTHKGEIA 120
           HFN+VLL VV+LYEELIKR       ++ N LGALDGTYIKVN+P  DR TFRT KGEIA
Sbjct: 100 HFNIVLLAVVQLYEELIKRPVPRLYLNLQNCLGALDGTYIKVNVPVGDRSTFRTRKGEIA 159

Query: 121 TNVLGVCNMKGDFVYVLAGWEGSVVDS--------------------------------- 180
           TNVLGVC+ KGDFVYVLAGWEGS  DS                                 
Sbjct: 160 TNVLGVCDTKGDFVYVLAGWEGSAADSRILRDALSQENGLQVPKGQRYHLQEWRGAANAP 219

Query: 181 ----------------------------------------EMTYCDDVDDVDEGDFAYAT 197
                                                   EMTYC DVDDVDEGD  YAT
Sbjct: 220 TNPNEYFNMKHSSARNVIECAFDVLKGRWAILRGKSYYPLEMTYCKDVDDVDEGDSTYAT 279

[Close]

BLAST of Pay0012989 vs. NCBI nr
Match: KAA0047370.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 283.5 bits (724), Expect = 1.4e-72
Identity = 158/276 (57.25%), Postives = 173/276 (62.68%), Query Frame = 0


Query: 1   MDKGTFAILCHLLQTVSGLLSTEIVNVEKMVAMFLHVLAHDVKSRVIQREFVLSDETVSQ 60
           MD+ TF ILCHLL+ V+GL STEIV+VE+MVAMFLHVLAHDVK+RVIQREFV S ETVS+
Sbjct: 40  MDRRTFTILCHLLRNVAGLSSTEIVDVEEMVAMFLHVLAHDVKNRVIQREFVRSGETVSR 99

Query: 61  HFNLVLLVVVRLYEELIKR-------HVSNFLGALDGTYIKVNIPTADRPTFRTHKGEIA 120
           HFN+VLL VV+LYEELIKR       ++ N LGALDGTYIKVN+P  DR TFRT KGEIA
Sbjct: 100 HFNIVLLAVVQLYEELIKRPVPRLYLNLQNCLGALDGTYIKVNVPVGDRSTFRTRKGEIA 159

Query: 121 TNVLGVCNMKGDFVYVLAGWEGSVVD---------------------------------- 180
           TNVLGVC+ KGDFVYVLAGWEGS  D                                  
Sbjct: 160 TNVLGVCDTKGDFVYVLAGWEGSAADSRILRDALSQENGLQGFFALYRGQRYHLQEWRGA 219

Query: 181 ---------------------------------------SEMTYCDDVDDVDEGDFAYAT 197
                                                  SEMTYC DVDDVDEGD  YAT
Sbjct: 220 ANAPTNPNEYFNMKHSSARNVIECAFDVLKGRWAILRGKSEMTYCKDVDDVDEGDSTYAT 279

[Close]

BLAST of Pay0012989 vs. NCBI nr
Match: KAA0025501.1 (retrotransposon protein [Cucumis melo var. makuwa] >TYK00363.1 retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 280.0 bits (715), Expect = 1.5e-71
Identity = 153/251 (60.96%), Postives = 169/251 (67.33%), Query Frame = 0


Query: 1   MDKGTFAILCHLLQTVSGLLSTEIVNVEKMVAMFLHVLAHDVKSRVIQREFVLSDETVSQ 60
           MDK TFAILCHLL+ V+GL STEIV+VE+MVAMFLHVLAHD+K+RVIQREFV S ETVS+
Sbjct: 40  MDKLTFAILCHLLRNVAGLSSTEIVDVEEMVAMFLHVLAHDMKNRVIQREFVRSGETVSR 99

Query: 61  HFNLVLLVVVRLYEELIKRHV--------------SNFLGALDGTYIKVNIPTADRPTFR 120
           HFN++LLVV+RLYEELIKR V               N LGALD TYIKVN+P  DRPTFR
Sbjct: 100 HFNIILLVVLRLYEELIKRPVPVTSNCNDQRWKCFENCLGALDRTYIKVNVPAGDRPTFR 159

Query: 121 THKGEIATNVLGVCNMKGDFVYVLAGWEGSVVDS-------------------------- 180
           T KGEIA  VLGVC+ KGDF YVLAGWEGS  DS                          
Sbjct: 160 TRKGEIAIYVLGVCDTKGDFAYVLAGWEGSAADSRILRDVLSRENGLQVQKGYYYLCDAG 219

Query: 181 ---------------EMTYCDDVDDVDEGDFAYATTTTIEEIHYIEMTNEWSQWRDKLAE 197
                          EM YC+DVD+ DEGD  YATTT  E+I YIE TNEWSQWRD LAE
Sbjct: 220 YPNAEGFLDPYRGQREMIYCEDVDNEDEGDSTYATTTASEDIQYIETTNEWSQWRDDLAE 279

[Close]

BLAST of Pay0012989 vs. TAIR 10
Match: AT5G41980.1 (CONTAINS InterPro DOMAIN/s: Putative harbinger transposase-derived nuclease (InterPro:IPR006912); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G43722.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). )

HSP 1 Score: 90.9 bits (224), Expect = 1.2e-18
Identity = 51/154 (33.12%), Postives = 81/154 (52.60%), Query Frame = 0


Query: 1   MDKGTFAILCHLLQTVSGLLSTEIVNVEKMVAMFLHVLAHDVKSRVIQREFVLSDETVSQ 60
           MDK  F  LC LLQT   L  T  + +E  +A+FL ++ H++++R +Q  F  S ET+S+
Sbjct: 48  MDKPVFYKLCDLLQTRGLLRHTNRIKIEAQLAIFLFIIGHNLRTRAVQELFCYSGETISR 107

Query: 61  HFNLVLLVVVRLYEELIK------------RHVSNFLGALDGTYIKVNIPTADRPTFRTH 120
           HFN VL  V+ + ++  +             +  + +G +D  +I V +   ++  FR  
Sbjct: 108 HFNNVLNAVIAISKDFFQPNSNSDTLENDDPYFKDCVGVVDSFHIPVMVGVDEQGPFRNG 167

Query: 121 KGEIATNVLGVCNMKGDFVYVLAGWEGSVVDSEM 143
            G +  NVL   +    F YVLAGWEGS  D ++
Sbjct: 168 NGLLTQNVLAASSFDLRFNYVLAGWEGSASDQQV 201

[Close]

BLAST of Pay0012989 vs. TAIR 10
Match: AT5G28950.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G41980.1); Has 448 Blast hits to 446 proteins in 74 species: Archae - 0; Bacteria - 0; Metazoa - 31; Fungi - 21; Plants - 396; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 63.2 bits (152), Expect = 2.8e-10
Identity = 26/58 (44.83%), Postives = 39/58 (67.24%), Query Frame = 0


Query: 85  LGALDGTYIKVNIPTADRPTFRTHKGEIATNVLGVCNMKGDFVYVLAGWEGSVVDSEM 143
           +GA+D T+I   +     P+FR  KG+I+ N+L  CN   +F+YVL+GWEGS  DS++
Sbjct: 26  VGAIDDTHIFAMVSQKKMPSFRNRKGDISQNMLAACNFDVEFMYVLSGWEGSAHDSKV 83

The following BLAST results are available for this feature:

BLAST of Pay0012989 vs.


Match Name	E-value	Identity	Description

BLAST of Pay0012989 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S3BNP1	1.6e-106	100.00	uncharacterized protein LOC103492066 OS=Cucumis melo OX=3656 GN=LOC103492066 PE=...	[more]
A0A5A7UJ27	3.7e-95	76.28	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A5D3CUG9	6.7e-73	57.25	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5A7TW41	6.7e-73	57.25	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A5D3BKS9	7.5e-72	60.96	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]

BLAST of Pay0012989 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008450472.1	3.3e-106	100.00	PREDICTED: uncharacterized protein LOC103492066 [Cucumis melo]	[more]
KAA0055933.1	7.6e-95	76.28	retrotransposon protein [Cucumis melo var. makuwa]	[more]
TYK14046.1	1.4e-72	57.25	retrotransposon protein [Cucumis melo var. makuwa]	[more]
KAA0047370.1	1.4e-72	57.25	retrotransposon protein [Cucumis melo var. makuwa]	[more]
KAA0025501.1	1.5e-71	60.96	retrotransposon protein [Cucumis melo var. makuwa] >TYK00363.1 retrotransposon p...	[more]

BLAST of Pay0012989 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G41980.1	1.2e-18	33.12	CONTAINS InterPro DOMAIN/s: Putative harbinger transposase-derived nuclease (Int...	[more]
AT5G28950.1	2.8e-10	44.83	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (Payzawat) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR027806	Harbinger transposase-derived nuclease domain	PFAM	PF13359	DDE_Tnp_4	coord: 88..143 e-value: 3.0E-7 score: 30.2
None	No IPR available	PANTHER	PTHR22930:SF201	NUCLEASE HARBI1-LIKE PROTEIN	coord: 1..139
None	No IPR available	PANTHER	PTHR22930	UNCHARACTERIZED	coord: 1..139

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Pay0012989.1	Pay0012989.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0046872	metal ion binding