Pay0012578 (gene) Melon (Payzawat) v1

Overview
NamePay0012578
Typegene
OrganismCucumis melo L. var. inodorus cv. Payzawat (Melon (Payzawat) v1)
DescriptionDNA primase
Locationchr08: 26166536 .. 26173514 (-)
RNA-Seq ExpressionPay0012578
SyntenyPay0012578
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCGTAGGTATGTTGAAGAGATTGTTTTCTCTTTTACCTACCCTAGGCTTAATTTGGAGGTATTTGTATTACCTGACTTTCTCTTAAGATTCTTAACTAGATTTTCTTTTTCATTTATTGTAATTAGATCAATTTGTTCTTGCATTTAGCTTTGTTACATTTTGGATCTCTAATTGGCATGGATAGGGATTGCAACAAAAAATTTCTAATTTACTTGTTAACGCTGATTTTAATTTACTCCCTTGATGAGGCAAGTTCTTTATTGTTCAGGTTACTAAACACATGAACCATCTGCTAAAAGCACCATTCTGTGTTCATCCCAAAACAGGTCGGTGTTGGATATAAATGCTAAAGTTAAATTAGTTGTGACTTGCTGAAACCTCATTGTGGTCTCAATGTAAAAGATTCATAAGGTTCTTATCAAAAAATAATAATTAAATATCATTAAAATGCACTTGATTTTGGAACCCTGATTAGAACGAAGGATCCAATTTTTCACTTTTGTGAACAGAACATGTGGTTACATATCACTGAATCTTACTGTTCCTTTTTATTCCAGGTCGTATCTGTGTCCCAATAGACCCTGAACACTGTGATGAGTTTGATCCTACTACTGTGCCAACTGTTGCCCAGGTAAAAATAACAAGAAATAAATGCATATTGCATAAATATTATGCTTTGCAACTCATTTGCAGCGAGGAAAATGTTTACTTTTCAGTTTAATACCTGATATTTTGTTGTGATTTAGTATACATAAGCTGAATTTTGGAATTTTTATTGTGTGTATATATATTTTTTATTATAAATGTCAGCAAACTTTAATCTTAAAAGGAAAAAGAAACAGAGAAAAAACCTAAAGGGCAAGGGAACAAGGTGTCTCCTCCCCAAAGCACGAGAATTATCAAAAGACCTTTCAATTGGTTGATTGCACAAGTGGTGCAATTACAAAAAGGATTGTGAAGGCTATTCCAATAGAGGTCGTTTCTCGTACAAGATCGCTAAAATAATTAAAAGAACTACACTTATCTGAAAAAACCGTAGCAGTCCTTTCCTTCCACAATAACCATAAGATTGCCTTCTGCACATTGCTCTAAAGCACTTTGGTTTTGTCTTTCAACTCTCCTCCACTGAAAGAATCAGCCATCCAATCTTTAACTGACCCGGGCATGCATCAGTCCAAATTAAACAGCCTCCTGAAATGCTCCCAAACCCTTCTACAGAAGTCACAATTGAGAAATTAGTGGTTCAAGGTTTCCTCACTTCTTACACCATGCACATGTTGGGGGATAAATGGGGAAATCTACTTGAATTTTTGACATTTATATTGGTACTATCAAAAGTCGTGGTCCACAAAAATAACCTAGTTTTTTTTTGTGAAACTAAACCCTTTCAAATATAAAGCCAACATAATTCAGGAGCCTTCTTTTCTTGAGCAATTCAATATAGGCAGACTTTACAGAGAACTTCCTACGCAACTTCACCCTCTAGACCAACTGATCTTCTGGGAATAAAGGGTCTACACTCCTTCAGAATAATACTGAGGTTGCTCCATTCTTCCAACTCCCTATCAAAGCAACTTTTTCTCAGCTTTAAATCCCAACTAAGGCCCATGAGATTCCACAAATCACTTTGCTTTGTTAGGCAACCAAAATTTTAAAACATCAATTGGTAGCAGCTTTTTCTTTGTGCATTCTGGCTGAAGAAAGATGATAAATACTTGTACAGATAAACCAAGATACAAAGCAATTATTCCATTATTCTTCATGGTAATTTGGTTTCTGTGCAATAACTTGAATTATAATGATGGATTGCAGCTCCTAGAAGAACTTAATGCAGCAGACATGGAAGTAGATAGTGAGACTGGTACGTTATACGATATCCTATCTTTACTATAGATTCGAGAGGTTCCTCCTTTAATTGCTTAGGTAACTGCAGTAGAATAACTCAATAAAAGTGATTAATCAATGCTGTTACAATCTTTTTCTTTAAGACAGACTGGGATAGAACCTCACTTGGCGAATCAATTAGGTTTTTCAGATCAGCATTCTTACAGCCATTACTAAAATCATGCAAGGTAAATCATCCCTTCATTTGGTGCCTTTTCATTATGGCTCTCTGGCGTAAATTTTTCTAACTTTTAACTTGACAAGGCGGATGTGTGTTTCTAGGAGAATCATTGTCGATCTGTATAAAATGAGTATGTGCTATTAATAATGTAGGAAGGAAGTTGCATTACGTCAGAGAGAGGTATTTACAACATCAAATACGTAACATCAAATACGTAACATTGTCGATCAACTTTGGTGGCTCTCCATTGTTGCTTCTGTTATGTCTTTTACTTACTCAACTATTGGACTTGGCCTTGGAGTTGCTCAAATTACTGGTAAATCCCATTAAACACATGGATCATAGTATAATATTTAAAACCTTTTTAATGCGATTTTAAGATGAAGATTGTGACTGTACTGTTCTTGTTTTGATTGTTTGTTTTAGCAAATGGAAAAATTGGAGGGAGCTTGACTGGAATTAGCATAGGAACTGTCACTCAAACACAAAAAGTATGGAGGAGCTTCCAAGCTCTTGGAGACATTGCTTTTGCCTACTCATACTCGATTATCCTCATTGAAATTCAGGTACGAATCTCAGAAAAAATCGATGTCCTTTTCCTTTTCCTTTTCCTTTTTTCTTCTTTTTTCAATTTGATTGATGGAGGTATGTTATGTTTTGTGGAACAGGACACTCTAAAATCTCCACCTTCAGAGGCTAAGACAATGAAGAAGGCAACTCTAGTGAGTGTGTCGGTGACAACGCTTTTTTATATGTTGTGTGGCGCTGCTGGCTACGCACCATTCGGGCACATGGCACCGGGAAACCTACTCACTGGGTTCGGGTTCTATATATAAATACAATATTAAGATTTCATTTTGTGTATGCAAATGTAAAAGACAAATATTAAAGTTTCTAAATAATATTAATTTTATTGATTTGTTGGCCTGAGAAAAAATATTTATTTACACGGATCGACTGTCAGTTTATAAAAAATGGAAAATAATGCAGCAATTAAATAAAAATAAATTTGTAAAAATGGATCCAAAAACAAGGCTTTAATGTCGTTTTTAAACTGACATTATTGGGGATCTATAATGTCGGTTATAAACCGACATTGTTGGCCTCTTTAATGTCGGTTTTAAACCGACATCAAAGCCCAACTGACATTAAAAGGCTTCAATAACACTATGAAAGATGTCGGTTGAAAACCGACATTAAAGGCCTTTAATGTCAGTTTTAAACCGACATTAAAGATGCCTTTAATGTCGCTTTTAAACCGACATTAAAGCCCAACCGACATTAAAGGCCTTTAATAACGCTCGCAAAGATGTCGGTCGCCAAGTGACATTAAAGGTCTTTAATGTCGGTTTTAAACCGACATTAAAGGCCAGATTTCTTGTAGTGGGTATACATAAGTCGGGTTGGAGGAAAATTATGGACAAACCCAAAATTCTGGTTGACAAAAAATGAACTCTATCGATTCACTATGCAAGGGTCAATCTAATCCGAAAAATACAAGTTGAGTTGGCGGGTTAGGTCTTGTTTTTTCATCTCCATTATTGTTGTACCGCAAGTGAATATAAATATATTATTTATAAATAATAAATTTTAACTAATACATCTATCATTAATATTTTATATTATTTTAATCATATAAAACTATTTAATATAAGATTTTATAATTAATCATTAATATTTTAATTAAATTAAATTATTAATTATTAAATAAAAATTTTTAATTAATACTTAATCAAAATATTCATCTAATCTATGACTACATTACTTGTTCTCTTCCATTTCATTAAATAATTATTTAGTTTTGAGTTCTATATAAAAATTGTTAAATCAAATACATTCCCTTAATTTTCAAACATTAATTATCTTGTATATCCAAACGCAGACATTAATTACTCTAGACATTTATAGTCCAAACATTCAAATTTCACACATTTAATATCTATGTCCATAAAACAATATTTATCTAAACGACCTTTTAATTGTTTTCCCAATCATACCTATTTATATATTTTCTACCATTACTTTTATTCATTAATTCTATTAATTATATACCTAATGGAATATACTTATACATCTTTATTGCTACTTTAAAAAGTCAAATCTAGCAATAATTACACTAAAAAAATACACTAATATTATCAAAATAAGCATAACTCAATTGATATTATACATGTATTATTTATCTCTAAGTTAGAAGTTCGATTCTCCCTTAAAAAACACCGTTTAATACTTTAACTTAGGACTCACTGTGGTTATTTAGATCGACTGGTAATTGGGTCAAAATGTTATTTAATCTGGTTTTTTAAAATAATAAAAATTATTTCCATTCAAAAAAAAAAAAAAAAAAAAAAAGGAAAAAACAAAGCAAACGTAAAAGTGGGTTTGCAAGTTGGGTATATATAAGAATTAATTATGATCATATTTTAACATCTGTTCGGAGAATCTTTTTCTTCAAGTTTTCTCTCTTTTCATTTTGAGTAATTGTACCTATAACATTAGTGGTAATTTTGTCGGTTTTAAAATTTATTAAATAAACGTTAAAGAAAATTAAAAAGTCACGTAACTTTTTAAATTAATCAACAATTAATATTTAAATATCAATTACATTTAAAACAAATTACCACTAAATATATAAATCATCAATGTTATACTTCTTTTTTTTTTTCAAAAAACCTTTTAGCTTTCCAAGGTTTCATTCATTCTTCTAGAAAATAATTTTCATTAATTTTTTTATCGTTACAAAGCCATCCATTAACCGACATTAATTTAACAATTCATGCCAATAATAAATAAATAAATTTTTGTATCTAAGATGTCTTCTCATTCTATAAATTTAATTTACTATATAAAGTTCATTATGCTAATTGAAAGATATCATTCTCTCAAGTATGTGATGACATACAACGATATAGAAATAAGAGAATGTTTGAGGCCATGCCATTGGAGCATCAAATCATGTAGAAACCAATCTATTGAGACAAAGATCAAAACAGAGGAATGGGGTCACTAGGTAGCTAAATTAATAGAGATTTTCATATTGGAGTATTGTTGATAGGTAAGTATATACAACAATCATTAGAGTAATATCAAGAATAACTTATTTAAAATTTCCTATTCAAAAAATAGTGAGCACAATACTTTTGTCATGGCGATGCCCATTAATTGCTACTCATGGTAATTGCATTTTGACTACGTATAACAGTTTGATTTGGAAATTGTCTTTACACTTGTTTTATCACGTGAAGATGAAGAGGTGGTTCTATAATTTATTTTTATTGTATTTAATAATCATGGGTTGTTTTTTTTAAAAAAATAGATAATTAATAACTTATGGTTATTAGTATAAAAGAGATTATTAGCAATATTTAAAAAAAGAAAAACAAACACACTTCCGACAAACTTTTTTTCTATTTAAAAATTTATTGTTCTAATAATTTACTTTACTCTGTATTTATATTAGGGAGAAAATACTGTATTTGTACTATGTAGAAAATATTTTATGAAAAAATACTTTAATAAGAATATAATAAAAAATATAATATATGTATTTAAAAATATTATTAAAAATATTTGATTTATTGTGAATATTACGATATTAATATGTCTATTAAACAAATAGTTTATTATAACAATTTCTATGATATTTTTTAACTCTAAACAAGTTTTGTTTATAAAAAGGAAAGTAGGTTATAAATATAAAAAAAAAATATTATAACCTTTTTTTTAGAAAACATATTTTAAAATTTTGGCATTTGACGTTCATTGTGTTGTTACGAAAAAATTAATAACGAAAAAGAGAAGGATGGGGACAAAAGAAAAAAAAAAATCACTTTCCCCTAAAGCTATGATCCATTCATTTAAATGTCTTTTCATTTCTTTTAATTCTTTCATTTATTAAAGTACGGTGACTACCTATATTGGATTTTTATTATTTAATTAATTATACTCTATTAAAATTGTGTAAAATTGTCCTTTATTTTCATAAATTATATTGGAAACACACAACCAAACACATCATTCATTTTGTATTCTCATCTATTAGTTTCAAACATTTTTTTTTTTATCTTCAAGTGAAGGTGTTTAAATGATTCAATAATTCAAACATTTCGGACTACCTAATCTAGATTTGTAAAAATTTGATTTGTTTAGTTTCACTTTAGATTGAGTTGTTGAAGTTTTTCTATTTTTGTTGAGTTGGTACGATCCAATCCGAATTTTATATATATATTAATAAAAAATATATATTTCTTTTAAAAATGATGAATTTATAAATTCTTAATATTTTTCTTTTTGGAAAAGTTTCTTTTTTTATAAAGTTTGTCATAGATATCATGGATAGTTAGGGTATGATTGGATTACACTTTCAAGTGATTAAATTAAAAATTAAGTTGTTTTGAAAAAAATTTATGTGTTCAGCGATCATTTAAAATAGATTTTGAAAAACAAGTTTATAAAATAACGTGGTCTCGAATAAATACTTAAAACCAACTTTCAGAAAAATGAAATTTGAATGCTTAATGTTTAATCTTCCTAATTTGCATGAACACTCTAACCAACACCTTCATATGCCGTCACCAACCTTTGACAACCGTCTCCGTCAACTATCGTCGGCCAACAATCGACTACCATCTCCAACAACCATTATCGGTGAAAACCTCTTACCAATGTTTTTTATGCAATTGTCAACAACCAATTTTCGTCTACCATTTTTTCCACATTCATTTCCAACCAACCTCCAACGATTGCTTTTGATAATTGCAAATGACCAAACTTCGAACGATCGTTTTATGGCAACTACCGCAGGATAACTATCAACGACCACTAACCGTCGCCAGTGAACCTCTAGTCACCATTTTCTTGACAACTGTTTTTTCGATCGTTAATGGTCAACCTTCGACCATTTCTTTCTGA

mRNA sequence

ATGCGTAGGTATGTTGAAGAGATTGTTTTCTCTTTTACCTACCCTAGGCTTAATTTGGAGGTTACTAAACACATGAACCATCTGCTAAAAGCACCATTCTGTGTTCATCCCAAAACAGGTCGTATCTGTGTCCCAATAGACCCTGAACACTGTGATGAGTTTGATCCTACTACTGTGCCAACTGTTGCCCAGCTCCTAGAAGAACTTAATGCAGCAGACATGGAAGTAGATAGTGAGACTGCAAATGGAAAAATTGGAGGGAGCTTGACTGGAATTAGCATAGGAACTGTCACTCAAACACAAAAAGTATGGAGGAGCTTCCAAGCTCTTGGAGACATTGCTTTTGCCTACTCATACTCGATTATCCTCATTGAAATTCAGGATAACTATCAACGACCACTAACCGTCGCCAGTGAACCTCTAGTCACCATTTTCTTGACAACTGTTTTTTCGATCGTTAATGGTCAACCTTCGACCATTTCTTTCTGA

Coding sequence (CDS)

ATGCGTAGGTATGTTGAAGAGATTGTTTTCTCTTTTACCTACCCTAGGCTTAATTTGGAGGTTACTAAACACATGAACCATCTGCTAAAAGCACCATTCTGTGTTCATCCCAAAACAGGTCGTATCTGTGTCCCAATAGACCCTGAACACTGTGATGAGTTTGATCCTACTACTGTGCCAACTGTTGCCCAGCTCCTAGAAGAACTTAATGCAGCAGACATGGAAGTAGATAGTGAGACTGCAAATGGAAAAATTGGAGGGAGCTTGACTGGAATTAGCATAGGAACTGTCACTCAAACACAAAAAGTATGGAGGAGCTTCCAAGCTCTTGGAGACATTGCTTTTGCCTACTCATACTCGATTATCCTCATTGAAATTCAGGATAACTATCAACGACCACTAACCGTCGCCAGTGAACCTCTAGTCACCATTTTCTTGACAACTGTTTTTTCGATCGTTAATGGTCAACCTTCGACCATTTCTTTCTGA

Protein sequence

MRRYVEEIVFSFTYPRLNLEVTKHMNHLLKAPFCVHPKTGRICVPIDPEHCDEFDPTTVPTVAQLLEELNAADMEVDSETANGKIGGSLTGISIGTVTQTQKVWRSFQALGDIAFAYSYSIILIEIQDNYQRPLTVASEPLVTIFLTTVFSIVNGQPSTISF
Homology
[Close]
BLAST of Pay0012578 vs. ExPASy Swiss-Prot
Match: Q39134 (Amino acid permease 3 OS=Arabidopsis thaliana OX=3702 GN=AAP3 PE=1 SV=2)

HSP 1 Score: 94.4 bits (233), Expect = 1.3e-18
Identity = 49/78 (62.82%), Postives = 61/78 (78.21%), Query Frame = 0 

Query: 82  NGKIGGSLTGISIGTVTQTQKVWRSFQALGDIAFAYSYSIILIEIQDNYQRP----LTVA 141
           NGK+ GSLTGISIG VT+TQK+WR+FQALGDIAFAYSYSIILIEIQD  + P     T+ 
Sbjct: 214 NGKVKGSLTGISIGAVTETQKIWRTFQALGDIAFAYSYSIILIEIQDTVKSPPSEEKTMK 273

Query: 142 SEPLVTIFLTTVFSIVNG 156
              LV++ +TT+F ++ G
Sbjct: 274 KATLVSVSVTTMFYMLCG 291

[Close]
BLAST of Pay0012578 vs. ExPASy Swiss-Prot
Match: Q38967 (Amino acid permease 2 OS=Arabidopsis thaliana OX=3702 GN=AAP2 PE=1 SV=1)

HSP 1 Score: 93.2 bits (230), Expect = 2.9e-18
Identity = 49/86 (56.98%), Postives = 62/86 (72.09%), Query Frame = 0 

Query: 81  ANGKIGGSLTGISIGTVTQTQKVWRSFQALGDIAFAYSYSIILIEIQDNYQRP----LTV 140
           ANG   GSLTGISIGTVTQTQK+WR+FQALGDIAFAYSYS++LIEIQD  + P     T+
Sbjct: 229 ANGVFKGSLTGISIGTVTQTQKIWRTFQALGDIAFAYSYSVVLIEIQDTVRSPPAESKTM 288

Query: 141 ASEPLVTIFLTTVFSIVNGQPSTISF 163
                ++I +TT+F ++ G     +F
Sbjct: 289 KKATKISIAVTTIFYMLCGSMGYAAF 314

[Close]
BLAST of Pay0012578 vs. ExPASy Swiss-Prot
Match: O14215 (DNA primase small subunit OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=pri1 PE=1 SV=1)

HSP 1 Score: 93.2 bits (230), Expect = 2.9e-18
Identity = 39/65 (60.00%), Postives = 53/65 (81.54%), Query Frame = 0 

Query: 6   EEIVFSFTYPRLNLEVTKHMNHLLKAPFCVHPKTGRICVPIDPEHCDEFDPTTVPTVAQL 65
           ++IV ++ YPRL++EV++H+NHLLK+PFCVHP T R+CVPID E  D F+P  VPTV  L
Sbjct: 321 QDIVLTYLYPRLDVEVSRHLNHLLKSPFCVHPGTSRVCVPIDIERMDSFNPLKVPTVNDL 380

Query: 66  LEELN 71
           L+EL+
Sbjct: 381 LQELD 385

[Close]
BLAST of Pay0012578 vs. ExPASy Swiss-Prot
Match: Q24317 (DNA primase small subunit OS=Drosophila melanogaster OX=7227 GN=Prim1 PE=1 SV=2)

HSP 1 Score: 92.8 bits (229), Expect = 3.8e-18
Identity = 40/73 (54.79%), Postives = 51/73 (69.86%), Query Frame = 0 

Query: 1   MRRYVEEIVFSFTYPRLNLEVTKHMNHLLKAPFCVHPKTGRICVPIDPEHCDEFDPTTVP 60
           ++  V EI     YPRL++ VT+  NHLLKAPFC+HP TG++CVP       +FDPTTVP
Sbjct: 317 LKNIVAEIQLGLLYPRLDINVTRGFNHLLKAPFCIHPATGKVCVPFSVSAVAKFDPTTVP 376

Query: 61  TVAQLLEELNAAD 74
           T+ QLL E+NA D
Sbjct: 377 TITQLLHEINAFD 389

[Close]
BLAST of Pay0012578 vs. ExPASy Swiss-Prot
Match: Q9FN04 (Amino acid permease 4 OS=Arabidopsis thaliana OX=3702 GN=AAP4 PE=1 SV=1)

HSP 1 Score: 90.1 bits (222), Expect = 2.5e-17
Identity = 47/79 (59.49%), Postives = 59/79 (74.68%), Query Frame = 0 

Query: 81  ANGKIGGSLTGISIGTVTQTQKVWRSFQALGDIAFAYSYSIILIEIQDNYQRP----LTV 140
           ANG + GSLTGISIG VTQTQK+WR+FQALGDIAFAYSYS++LIEIQD  + P     T+
Sbjct: 202 ANGVVKGSLTGISIGAVTQTQKIWRTFQALGDIAFAYSYSVVLIEIQDTVRSPPAESKTM 261

Query: 141 ASEPLVTIFLTTVFSIVNG 156
                ++I +TT F ++ G
Sbjct: 262 KIATRISIAVTTTFYMLCG 280

[Close]
BLAST of Pay0012578 vs. ExPASy TrEMBL
Match: A0A5A7SUG1 (Amino acid permease 3-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold103G00220 PE=3 SV=1)

HSP 1 Score: 269.6 bits (688), Expect = 8.3e-69
Identity = 136/159 (85.53%), Postives = 144/159 (90.57%), Query Frame = 0 

Query: 1   MRRYVEEIVFSFTYPRLNLEVTKHMNHLLKAPFCVHPKTGRICVPIDPEHCDEFDPTTVP 60
           MRRYVEEIVFSFTYPRLNLEVTKHMNHLLKAPFCVHPKTGRICVPIDPEHCDEFDPTTVP
Sbjct: 197 MRRYVEEIVFSFTYPRLNLEVTKHMNHLLKAPFCVHPKTGRICVPIDPEHCDEFDPTTVP 256

Query: 61  TVAQLLEELNAADMEVDSETANGKIGGSLTGISIGTVTQTQKVWRSFQALGDIAFAYSYS 120
           TVAQLLEELNAADMEVDSETANGKIGGSLTGISIGTVTQTQKVWRSFQALGDIAFAYSYS
Sbjct: 257 TVAQLLEELNAADMEVDSETANGKIGGSLTGISIGTVTQTQKVWRSFQALGDIAFAYSYS 316

Query: 121 IILIEIQDNYQRP----LTVASEPLVTIFLTTVFSIVNG 156
           IILIEIQD  + P     T+    LV++ +TT+F ++ G
Sbjct: 317 IILIEIQDTLKSPPSEAKTMKKATLVSVSVTTLFYMLCG 355

[Close]
BLAST of Pay0012578 vs. ExPASy TrEMBL
Match: A0A5A7T8Y3 (DNA primase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold169G001310 PE=3 SV=1)

HSP 1 Score: 166.8 bits (421), Expect = 7.6e-38
Identity = 78/80 (97.50%), Postives = 80/80 (100.00%), Query Frame = 0 

Query: 1   MRRYVEEIVFSFTYPRLNLEVTKHMNHLLKAPFCVHPKTGRICVPIDPEHCDEFDPTTVP 60
           MRR+VEEIVFSFTYPRL+LEVTKHMNHLLKAPFCVHPKTGRICVPIDPEHCDEFDPTTVP
Sbjct: 339 MRRHVEEIVFSFTYPRLDLEVTKHMNHLLKAPFCVHPKTGRICVPIDPEHCDEFDPTTVP 398

Query: 61  TVAQLLEELNAADMEVDSET 81
           TVAQLLEELNAADMEVDSET
Sbjct: 399 TVAQLLEELNAADMEVDSET 418

[Close]
BLAST of Pay0012578 vs. ExPASy TrEMBL
Match: A0A6J1I8T4 (DNA primase OS=Cucurbita maxima OX=3661 GN=LOC111472037 PE=3 SV=1)

HSP 1 Score: 163.7 bits (413), Expect = 6.4e-37
Identity = 77/80 (96.25%), Postives = 79/80 (98.75%), Query Frame = 0 

Query: 1   MRRYVEEIVFSFTYPRLNLEVTKHMNHLLKAPFCVHPKTGRICVPIDPEHCDEFDPTTVP 60
           MRR+VEEIVFSFTYPRL+LEVTKHMNHLLKAPFCVHPKTGRICVPIDPE CDEFDPTTVP
Sbjct: 319 MRRHVEEIVFSFTYPRLDLEVTKHMNHLLKAPFCVHPKTGRICVPIDPERCDEFDPTTVP 378

Query: 61  TVAQLLEELNAADMEVDSET 81
           TVAQLLEELNAADMEVDSET
Sbjct: 379 TVAQLLEELNAADMEVDSET 398

[Close]
BLAST of Pay0012578 vs. ExPASy TrEMBL
Match: A0A6J1EEZ9 (DNA primase OS=Cucurbita moschata OX=3662 GN=LOC111432676 PE=3 SV=1)

HSP 1 Score: 163.7 bits (413), Expect = 6.4e-37
Identity = 77/80 (96.25%), Postives = 79/80 (98.75%), Query Frame = 0 

Query: 1   MRRYVEEIVFSFTYPRLNLEVTKHMNHLLKAPFCVHPKTGRICVPIDPEHCDEFDPTTVP 60
           MRR+VEEIVFSFTYPRL+LEVTKHMNHLLKAPFCVHPKTGRICVPIDPE CDEFDPTTVP
Sbjct: 324 MRRHVEEIVFSFTYPRLDLEVTKHMNHLLKAPFCVHPKTGRICVPIDPERCDEFDPTTVP 383

Query: 61  TVAQLLEELNAADMEVDSET 81
           TVAQLLEELNAADMEVDSET
Sbjct: 384 TVAQLLEELNAADMEVDSET 403

[Close]
BLAST of Pay0012578 vs. ExPASy TrEMBL
Match: A0A0A0KUP7 (DNA primase OS=Cucumis sativus OX=3659 GN=Csa_5G647410 PE=3 SV=1)

HSP 1 Score: 162.5 bits (410), Expect = 1.4e-36
Identity = 76/79 (96.20%), Postives = 78/79 (98.73%), Query Frame = 0 

Query: 1   MRRYVEEIVFSFTYPRLNLEVTKHMNHLLKAPFCVHPKTGRICVPIDPEHCDEFDPTTVP 60
           MRR+VEEIVFSFTYPRL+ EVTKHMNHLLKAPFCVHPKTGRICVPIDPEHCDEFDPTTVP
Sbjct: 324 MRRHVEEIVFSFTYPRLDSEVTKHMNHLLKAPFCVHPKTGRICVPIDPEHCDEFDPTTVP 383

Query: 61  TVAQLLEELNAADMEVDSE 80
           TVAQLLEELNAADMEVDSE
Sbjct: 384 TVAQLLEELNAADMEVDSE 402

[Close]
BLAST of Pay0012578 vs. NCBI nr
Match: KAA0034894.1 (amino acid permease 3-like [Cucumis melo var. makuwa])

HSP 1 Score: 269.6 bits (688), Expect = 1.7e-68
Identity = 136/159 (85.53%), Postives = 144/159 (90.57%), Query Frame = 0 

Query: 1   MRRYVEEIVFSFTYPRLNLEVTKHMNHLLKAPFCVHPKTGRICVPIDPEHCDEFDPTTVP 60
           MRRYVEEIVFSFTYPRLNLEVTKHMNHLLKAPFCVHPKTGRICVPIDPEHCDEFDPTTVP
Sbjct: 197 MRRYVEEIVFSFTYPRLNLEVTKHMNHLLKAPFCVHPKTGRICVPIDPEHCDEFDPTTVP 256

Query: 61  TVAQLLEELNAADMEVDSETANGKIGGSLTGISIGTVTQTQKVWRSFQALGDIAFAYSYS 120
           TVAQLLEELNAADMEVDSETANGKIGGSLTGISIGTVTQTQKVWRSFQALGDIAFAYSYS
Sbjct: 257 TVAQLLEELNAADMEVDSETANGKIGGSLTGISIGTVTQTQKVWRSFQALGDIAFAYSYS 316

Query: 121 IILIEIQDNYQRP----LTVASEPLVTIFLTTVFSIVNG 156
           IILIEIQD  + P     T+    LV++ +TT+F ++ G
Sbjct: 317 IILIEIQDTLKSPPSEAKTMKKATLVSVSVTTLFYMLCG 355

[Close]
BLAST of Pay0012578 vs. NCBI nr
Match: XP_023522158.1 (DNA primase small subunit-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 166.8 bits (421), Expect = 1.6e-37
Identity = 78/80 (97.50%), Postives = 80/80 (100.00%), Query Frame = 0 

Query: 1   MRRYVEEIVFSFTYPRLNLEVTKHMNHLLKAPFCVHPKTGRICVPIDPEHCDEFDPTTVP 60
           MRR+VEEIVFSFTYPRL+LEVTKHMNHLLKAPFCVHPKTGRICVPIDPEHCDEFDPTTVP
Sbjct: 161 MRRHVEEIVFSFTYPRLDLEVTKHMNHLLKAPFCVHPKTGRICVPIDPEHCDEFDPTTVP 220

Query: 61  TVAQLLEELNAADMEVDSET 81
           TVAQLLEELNAADMEVDSET
Sbjct: 221 TVAQLLEELNAADMEVDSET 240

[Close]
BLAST of Pay0012578 vs. NCBI nr
Match: KAA0039338.1 (DNA primase, small subunit [Cucumis melo var. makuwa] >TYK00521.1 DNA primase, small subunit [Cucumis melo var. makuwa])

HSP 1 Score: 166.8 bits (421), Expect = 1.6e-37
Identity = 78/80 (97.50%), Postives = 80/80 (100.00%), Query Frame = 0 

Query: 1   MRRYVEEIVFSFTYPRLNLEVTKHMNHLLKAPFCVHPKTGRICVPIDPEHCDEFDPTTVP 60
           MRR+VEEIVFSFTYPRL+LEVTKHMNHLLKAPFCVHPKTGRICVPIDPEHCDEFDPTTVP
Sbjct: 339 MRRHVEEIVFSFTYPRLDLEVTKHMNHLLKAPFCVHPKTGRICVPIDPEHCDEFDPTTVP 398

Query: 61  TVAQLLEELNAADMEVDSET 81
           TVAQLLEELNAADMEVDSET
Sbjct: 399 TVAQLLEELNAADMEVDSET 418

[Close]
BLAST of Pay0012578 vs. NCBI nr
Match: XP_022925368.1 (DNA primase small subunit [Cucurbita moschata])

HSP 1 Score: 163.7 bits (413), Expect = 1.3e-36
Identity = 77/80 (96.25%), Postives = 79/80 (98.75%), Query Frame = 0 

Query: 1   MRRYVEEIVFSFTYPRLNLEVTKHMNHLLKAPFCVHPKTGRICVPIDPEHCDEFDPTTVP 60
           MRR+VEEIVFSFTYPRL+LEVTKHMNHLLKAPFCVHPKTGRICVPIDPE CDEFDPTTVP
Sbjct: 324 MRRHVEEIVFSFTYPRLDLEVTKHMNHLLKAPFCVHPKTGRICVPIDPERCDEFDPTTVP 383

Query: 61  TVAQLLEELNAADMEVDSET 81
           TVAQLLEELNAADMEVDSET
Sbjct: 384 TVAQLLEELNAADMEVDSET 403

[Close]
BLAST of Pay0012578 vs. NCBI nr
Match: XP_022973496.1 (DNA primase small subunit [Cucurbita maxima])

HSP 1 Score: 163.7 bits (413), Expect = 1.3e-36
Identity = 77/80 (96.25%), Postives = 79/80 (98.75%), Query Frame = 0 

Query: 1   MRRYVEEIVFSFTYPRLNLEVTKHMNHLLKAPFCVHPKTGRICVPIDPEHCDEFDPTTVP 60
           MRR+VEEIVFSFTYPRL+LEVTKHMNHLLKAPFCVHPKTGRICVPIDPE CDEFDPTTVP
Sbjct: 319 MRRHVEEIVFSFTYPRLDLEVTKHMNHLLKAPFCVHPKTGRICVPIDPERCDEFDPTTVP 378

Query: 61  TVAQLLEELNAADMEVDSET 81
           TVAQLLEELNAADMEVDSET
Sbjct: 379 TVAQLLEELNAADMEVDSET 398

[Close]
BLAST of Pay0012578 vs. TAIR 10
Match: AT5G41880.1 (DNA primases;DNA primases )

HSP 1 Score: 127.1 bits (318), Expect = 1.3e-29
Identity = 57/89 (64.04%), Postives = 74/89 (83.15%), Query Frame = 0 

Query: 1   MRRYVEEIVFSFTYPRLNLEVTKHMNHLLKAPFCVHPKTGRICVPIDPEHCDEFDPTTVP 60
           +R  VEEIVF+FTYPR++LEV+K MNHLLKAPFCVHPKTGR+CVPIDP +CDEFDP  VP
Sbjct: 324 LRTCVEEIVFTFTYPRIDLEVSKQMNHLLKAPFCVHPKTGRVCVPIDPNNCDEFDPLAVP 383

Query: 61  TVAQLLEELNAAD--MEVDSETANGKIGG 88
           T++QL+EE+N+    M+VD + ++  + G
Sbjct: 384 TLSQLIEEINSGGLRMDVDDDDSDSSLLG 412

[Close]
BLAST of Pay0012578 vs. TAIR 10
Match: AT1G77380.1 (amino acid permease 3 )

HSP 1 Score: 94.4 bits (233), Expect = 9.2e-20
Identity = 49/78 (62.82%), Postives = 61/78 (78.21%), Query Frame = 0 

Query: 82  NGKIGGSLTGISIGTVTQTQKVWRSFQALGDIAFAYSYSIILIEIQDNYQRP----LTVA 141
           NGK+ GSLTGISIG VT+TQK+WR+FQALGDIAFAYSYSIILIEIQD  + P     T+ 
Sbjct: 214 NGKVKGSLTGISIGAVTETQKIWRTFQALGDIAFAYSYSIILIEIQDTVKSPPSEEKTMK 273

Query: 142 SEPLVTIFLTTVFSIVNG 156
              LV++ +TT+F ++ G
Sbjct: 274 KATLVSVSVTTMFYMLCG 291

[Close]
BLAST of Pay0012578 vs. TAIR 10
Match: AT5G09220.1 (amino acid permease 2 )

HSP 1 Score: 93.2 bits (230), Expect = 2.1e-19
Identity = 49/86 (56.98%), Postives = 62/86 (72.09%), Query Frame = 0 

Query: 81  ANGKIGGSLTGISIGTVTQTQKVWRSFQALGDIAFAYSYSIILIEIQDNYQRP----LTV 140
           ANG   GSLTGISIGTVTQTQK+WR+FQALGDIAFAYSYS++LIEIQD  + P     T+
Sbjct: 229 ANGVFKGSLTGISIGTVTQTQKIWRTFQALGDIAFAYSYSVVLIEIQDTVRSPPAESKTM 288

Query: 141 ASEPLVTIFLTTVFSIVNGQPSTISF 163
                ++I +TT+F ++ G     +F
Sbjct: 289 KKATKISIAVTTIFYMLCGSMGYAAF 314

[Close]
BLAST of Pay0012578 vs. TAIR 10
Match: AT5G63850.1 (amino acid permease 4 )

HSP 1 Score: 90.1 bits (222), Expect = 1.7e-18
Identity = 47/79 (59.49%), Postives = 59/79 (74.68%), Query Frame = 0 

Query: 81  ANGKIGGSLTGISIGTVTQTQKVWRSFQALGDIAFAYSYSIILIEIQDNYQRP----LTV 140
           ANG + GSLTGISIG VTQTQK+WR+FQALGDIAFAYSYS++LIEIQD  + P     T+
Sbjct: 202 ANGVVKGSLTGISIGAVTQTQKIWRTFQALGDIAFAYSYSVVLIEIQDTVRSPPAESKTM 261

Query: 141 ASEPLVTIFLTTVFSIVNG 156
                ++I +TT F ++ G
Sbjct: 262 KIATRISIAVTTTFYMLCG 280

[Close]
BLAST of Pay0012578 vs. TAIR 10
Match: AT1G44100.1 (amino acid permease 5 )

HSP 1 Score: 76.3 bits (186), Expect = 2.6e-14
Identity = 43/90 (47.78%), Postives = 60/90 (66.67%), Query Frame = 0 

Query: 76  VDSETANGKIGGSLTGISI------GTVTQTQKVWRSFQALGDIAFAYSYSIILIEIQDN 135
           V     N +I GSLTG+++      GTVT +QK+WR+FQ+LG+IAFAYSYS+ILIEIQD 
Sbjct: 206 VSKVVENKEIKGSLTGVTVGTVTLSGTVTSSQKIWRTFQSLGNIAFAYSYSMILIEIQDT 265

Query: 136 YQRP----LTVASEPLVTIFLTTVFSIVNG 156
            + P     T+     V++ +TTVF ++ G
Sbjct: 266 VKSPPAEVNTMRKATFVSVAVTTVFYMLCG 295

The following BLAST results are available for this feature:
BLAST of Pay0012578 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q391341.3e-1862.82Amino acid permease 3 OS=Arabidopsis thaliana OX=3702 GN=AAP3 PE=1 SV=2[more]
Q389672.9e-1856.98Amino acid permease 2 OS=Arabidopsis thaliana OX=3702 GN=AAP2 PE=1 SV=1[more]
O142152.9e-1860.00DNA primase small subunit OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)... [more]
Q243173.8e-1854.79DNA primase small subunit OS=Drosophila melanogaster OX=7227 GN=Prim1 PE=1 SV=2[more]
Q9FN042.5e-1759.49Amino acid permease 4 OS=Arabidopsis thaliana OX=3702 GN=AAP4 PE=1 SV=1[more]
BLAST of Pay0012578 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5A7SUG18.3e-6985.53Amino acid permease 3-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaff... [more]
A0A5A7T8Y37.6e-3897.50DNA primase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold169G001310 P... [more]
A0A6J1I8T46.4e-3796.25DNA primase OS=Cucurbita maxima OX=3661 GN=LOC111472037 PE=3 SV=1[more]
A0A6J1EEZ96.4e-3796.25DNA primase OS=Cucurbita moschata OX=3662 GN=LOC111432676 PE=3 SV=1[more]
A0A0A0KUP71.4e-3696.20DNA primase OS=Cucumis sativus OX=3659 GN=Csa_5G647410 PE=3 SV=1[more]
BLAST of Pay0012578 vs. NCBI nr
Match NameE-valueIdentityDescription
KAA0034894.11.7e-6885.53amino acid permease 3-like [Cucumis melo var. makuwa][more]
XP_023522158.11.6e-3797.50DNA primase small subunit-like [Cucurbita pepo subsp. pepo][more]
KAA0039338.11.6e-3797.50DNA primase, small subunit [Cucumis melo var. makuwa] >TYK00521.1 DNA primase, s... [more]
XP_022925368.11.3e-3696.25DNA primase small subunit [Cucurbita moschata][more]
XP_022973496.11.3e-3696.25DNA primase small subunit [Cucurbita maxima][more]
BLAST of Pay0012578 vs. TAIR 10
Match NameE-valueIdentityDescription
AT5G41880.11.3e-2964.04DNA primases;DNA primases [more]
AT1G77380.19.2e-2062.82amino acid permease 3 [more]
AT5G09220.12.1e-1956.98amino acid permease 2 [more]
AT5G63850.11.7e-1859.49amino acid permease 4 [more]
AT1G44100.12.6e-1447.78amino acid permease 5 [more]
InterPro
Analysis Name: InterPro Annotations of Melon (Payzawat) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 62..82
NoneNo IPR availableGENE3D3.90.920.10DNA primase, PRIM domaincoord: 1..121
e-value: 3.7E-32
score: 113.8
NoneNo IPR availablePANTHERPTHR10536:SF1DNA PRIMASEcoord: 2..95
NoneNo IPR availableSUPERFAMILY56747Prim-pol domaincoord: 2..74
IPR013057Amino acid transporter, transmembrane domainPFAMPF01490Aa_transcoord: 87..155
e-value: 9.2E-9
score: 34.5
IPR002755DNA primase, small subunitPFAMPF01896DNA_primase_Scoord: 5..47
e-value: 8.6E-12
score: 45.4
IPR014052DNA primase, small subunit, eukaryotic/archaealPANTHERPTHR10536DNA PRIMASE SMALL SUBUNITcoord: 2..95

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Pay0012578.1Pay0012578.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006865 amino acid transport
biological_process GO:0009734 auxin-activated signaling pathway
biological_process GO:0006269 DNA replication, synthesis of RNA primer
biological_process GO:0055085 transmembrane transport
cellular_component GO:0005658 alpha DNA polymerase:primase complex
cellular_component GO:0016021 integral component of membrane
molecular_function GO:0003896 DNA primase activity
molecular_function GO:0046872 metal ion binding
molecular_function GO:0015293 symporter activity