Pay0012552 (gene) Melon (Payzawat) v1

Overview


Name	Pay0012552
Type	gene
Organism	Cucumis melo L. var. inodorus cv. Payzawat (Melon (Payzawat) v1)
Description	Ty1-copia retrotransposon protein
Location	chr11: 22515799 .. 22516735 (-)
RNA-Seq Expression	Pay0012552
Synteny	Pay0012552

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCGATCAAGACCTCCAACAAAATCCTACCGGACCTGTCTAAACTTGAGCCACTCGACGGAACAAACTACCGCCGTTGGTCCCAAAAGTTGCTAATCTTCTTTGAGCAACTAGAAGTTGATTATGTCCTCACTACAGATCTCCCGTCATCTGACCCCCCAACTACCACGTCAACATCCTCTAATCCAGAATCATCTACGGGGCCTCTTACAACTGTCGCTGTCACTGATCAAGTAAAGAAGGACCAAGTGATTGATCCTGAAAAATATGCAAAGGATAACAAGACCGTTCGAGGACACCTGTTAAACCATATGTCGGATCCGATGTTTGACCTCTTCGTAGTCCAAAAATCTGCCAAGGACATTTGGAGCACCCTGGAATCACGGTATGGAGGAGATGATGCTGGACGGAAAAAATATGTAGTTGGAAAATGGCTACAATTCCAGATGACTGACGACAAACCAGTCGTGGAACAAATACATGAGTACGAGAACTTGGTGGCAAACGTCCTGTCTGAAGACATGAAGATGTGCGAAATACTTCAAGCAAATGTCCTATTGGAAAATTTTCCTCCATCCTGGAATGACTACCGTAATCATCTCAAGCACAAGAAGAAGGATCTAAAGCTCCAGGAACTCATCAGTCATATGCGCACGGAAGAAGCCAACAGACTGAAAGATAAGTTAGCCTCCCAAAATTTAAATTCAGTTAATGCTAACTTAGTCGAATCATCCTTTGTAAACAGAGACAGAACAAAGCAGGAAAAATGGCATAAAGGGAAAAAGTCAGAGAAGAGACAATTCAAGACTACTGGGGAACAAATTAAGAAGAAAAAGCTGGTCTGCTACGTGTGCGGAAAGGAAGGGCACAAATCATACCAATGCAACTAGAGGAAAGGGAGGCCAAGTCAGAAACCAACACCTCAAGCCAATCTAG

mRNA sequence

ATGTCGATCAAGACCTCCAACAAAATCCTACCGGACCTGTCTAAACTTGAGCCACTCGACGGAACAAACTACCGCCGTTGGTCCCAAAAGTTGCTAATCTTCTTTGAGCAACTAGAAGTTGATTATGTCCTCACTACAGATCTCCCGTCATCTGACCCCCCAACTACCACGTCAACATCCTCTAATCCAGAATCATCTACGGGGCCTCTTACAACTGTCGCTGTCACTGATCAAGTAAAGAAGGACCAAGTGATTGATCCTGAAAAATATGCAAAGGATAACAAGACCGTTCGAGGACACCTGTTAAACCATATGTCGGATCCGATGTTTGACCTCTTCGTAGTCCAAAAATCTGCCAAGGACATTTGGAGCACCCTGGAATCACGGTATGGAGGAGATGATGCTGGACGGAAAAAATATGTAGTTGGAAAATGGCTACAATTCCAGATGACTGACGACAAACCAGTCGTGGAACAAATACATGAGTACGAGAACTTGGTGGCAAACGTCCTGTCTGAAGACATGAAGATGTGCGAAATACTTCAAGCAAATGTCCTATTGGAAAATTTTCCTCCATCCTGGAATGACTACCGTAATCATCTCAAGCACAAGAAGAAGGATCTAAAGCTCCAGGAACTCATCAGTCATATGCGCACGGAAGAAGCCAACAGACTGAAAGATAAGTTAGCCTCCCAAAATTTAAATTCAGTTAATGCTAACTTAGTCGAATCATCCTTTGTAAACAGAGACAGAACAAAAAGAGACAATTCAAGACTACTGGGGAACAAATTAAGAAGAAAAAGCTGGTCTGCTACGTGTGCGGAAAGGAAGGGCACAAATCATACCAATGCAACTAGAGGAAAGGGAGGCCAAGTCAGAAACCAACACCTCAAGCCAATCTAG

Coding sequence (CDS)

ATGTCGATCAAGACCTCCAACAAAATCCTACCGGACCTGTCTAAACTTGAGCCACTCGACGGAACAAACTACCGCCGTTGGTCCCAAAAGTTGCTAATCTTCTTTGAGCAACTAGAAGTTGATTATGTCCTCACTACAGATCTCCCGTCATCTGACCCCCCAACTACCACGTCAACATCCTCTAATCCAGAATCATCTACGGGGCCTCTTACAACTGTCGCTGTCACTGATCAAGTAAAGAAGGACCAAGTGATTGATCCTGAAAAATATGCAAAGGATAACAAGACCGTTCGAGGACACCTGTTAAACCATATGTCGGATCCGATGTTTGACCTCTTCGTAGTCCAAAAATCTGCCAAGGACATTTGGAGCACCCTGGAATCACGGTATGGAGGAGATGATGCTGGACGGAAAAAATATGTAGTTGGAAAATGGCTACAATTCCAGATGACTGACGACAAACCAGTCGTGGAACAAATACATGAGTACGAGAACTTGGTGGCAAACGTCCTGTCTGAAGACATGAAGATGTGCGAAATACTTCAAGCAAATGTCCTATTGGAAAATTTTCCTCCATCCTGGAATGACTACCGTAATCATCTCAAGCACAAGAAGAAGGATCTAAAGCTCCAGGAACTCATCAGTCATATGCGCACGGAAGAAGCCAACAGACTGAAAGATAAGTTAGCCTCCCAAAATTTAAATTCAGTTAATGCTAACTTAGTCGAATCATCCTTTGTAAACAGAGACAGAACAAAAAGAGACAATTCAAGACTACTGGGGAACAAATTAAGAAGAAAAAGCTGGTCTGCTACGTGTGCGGAAAGGAAGGGCACAAATCATACCAATGCAACTAGAGGAAAGGGAGGCCAAGTCAGAAACCAACACCTCAAGCCAATCTAG

Protein sequence

MSIKTSNKILPDLSKLEPLDGTNYRRWSQKLLIFFEQLEVDYVLTTDLPSSDPPTTTSTSSNPESSTGPLTTVAVTDQVKKDQVIDPEKYAKDNKTVRGHLLNHMSDPMFDLFVVQKSAKDIWSTLESRYGGDDAGRKKYVVGKWLQFQMTDDKPVVEQIHEYENLVANVLSEDMKMCEILQANVLLENFPPSWNDYRNHLKHKKKDLKLQELISHMRTEEANRLKDKLASQNLNSVNANLVESSFVNRDRTKRDNSRLLGNKLRRKSWSATCAERKGTNHTNATRGKGGQVRNQHLKPI

Homology

[Close]

BLAST of Pay0012552 vs. ExPASy TrEMBL
Match: A0A1S3C3Z1 (uncharacterized protein LOC103496396 OS=Cucumis melo OX=3656 GN=LOC103496396 PE=4 SV=1)

HSP 1 Score: 500.0 bits (1286), Expect = 7.0e-138
Identity = 260/290 (89.66%), Postives = 266/290 (91.72%), Query Frame = 0


Query: 1   MSIKTSNKILPDLSKLEPLDGTNYRRWSQKLLIFFEQLEVDYVLTTDLPSSDPPTTTSTS 60
           MSIKTSNKILPDLSKLEPLDGTNYRRWSQKLLIFFEQLEVDYVLTTDLPSSDPPTTTSTS
Sbjct: 1   MSIKTSNKILPDLSKLEPLDGTNYRRWSQKLLIFFEQLEVDYVLTTDLPSSDPPTTTSTS 60

Query: 61  SNPESSTGPLTTVAVTDQVKKDQVIDPEKYAKDNKTVRGHLLNHMSDPMFDLFVVQKSAK 120
           SNPESSTGPLTTVAVTDQVKKDQVIDPEKYAKDNKTVRGHLLNHMSDPMFDLFVVQKSAK
Sbjct: 61  SNPESSTGPLTTVAVTDQVKKDQVIDPEKYAKDNKTVRGHLLNHMSDPMFDLFVVQKSAK 120

Query: 121 DIWSTLESRYGGDDAGRKKYVVGKWLQFQMTDDKPVVEQIHEYENLVANVLSEDMKMCEI 180
           DIWSTLESRYGGDDAGRKKYVVGKWLQFQMTDDKPVVEQIHEYENLVANVLSEDMKMCEI
Sbjct: 121 DIWSTLESRYGGDDAGRKKYVVGKWLQFQMTDDKPVVEQIHEYENLVANVLSEDMKMCEI 180

Query: 181 LQANVLLENFPPSWNDYRNHLKHKKKDLKLQELISHMRTEEANRLKDKLASQNLNSVNAN 240
           LQANVLLENFPPSWNDYRNHLKHKKKDLKLQELISHMRTEEANRLKDKLASQNLNSVNAN
Sbjct: 181 LQANVLLENFPPSWNDYRNHLKHKKKDLKLQELISHMRTEEANRLKDKLASQNLNSVNAN 240

Query: 241 LVESSFVNRDRTKRDNSRLLGNKLRRKSWSATCAERKGTNHTNATRGKGG 291
           LVESSFVNRDRTK++     G K  ++ +  T  + K         GK G
Sbjct: 241 LVESSFVNRDRTKQEKWH-KGKKSEKRQFKTTGEQIKKKKLVCYVCGKEG 289

[Close]

BLAST of Pay0012552 vs. ExPASy TrEMBL
Match: A0A5A7U9X9 (Ty1-copia retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold2606G00270 PE=4 SV=1)

HSP 1 Score: 491.1 bits (1263), Expect = 3.3e-135
Identity = 249/267 (93.26%), Postives = 256/267 (95.88%), Query Frame = 0


Query: 1   MSIKTSNKILPDLSKLEPLDGTNYRRWSQKLLIFFEQLEVDYVLTTDLPSSDPPTTTSTS 60
           MSIKTSNKILPDLSKLEPLDGTNYRRWSQKLLIFFEQLEVDYVLTTDLP+SDPPTTTSTS
Sbjct: 1   MSIKTSNKILPDLSKLEPLDGTNYRRWSQKLLIFFEQLEVDYVLTTDLPTSDPPTTTSTS 60

Query: 61  SNPESSTGPLTTVAVTDQVKKDQVIDPEKYAKDNKTVRGHLLNHMSDPMFDLFVVQKSAK 120
           S+PESSTGPLT VAVTDQVKKDQVIDPEKYAKDNKTVRGHLLNHMSDPMFDLFVVQKSAK
Sbjct: 61  SDPESSTGPLTAVAVTDQVKKDQVIDPEKYAKDNKTVRGHLLNHMSDPMFDLFVVQKSAK 120

Query: 121 DIWSTLESRYGGDDAGRKKYVVGKWLQFQMTDDKPVVEQIHEYENLVANVLSEDMKMCEI 180
           DIWSTLESRYGGDDAGRKKYVVGKWLQFQMTDDKPV+EQIHEYENLVANVLSE MKMCEI
Sbjct: 121 DIWSTLESRYGGDDAGRKKYVVGKWLQFQMTDDKPVMEQIHEYENLVANVLSEGMKMCEI 180

Query: 181 LQANVLLENFPPSWNDYRNHLKHKKKDLKLQELISHMRTEEANRLKDKLASQNLNSVNAN 240
           LQANVLLE FPPSWNDYRNHLKHKKKDLKLQELISHMRTEEANRLKDKLASQNLNSVNAN
Sbjct: 181 LQANVLLEKFPPSWNDYRNHLKHKKKDLKLQELISHMRTEEANRLKDKLASQNLNSVNAN 240

Query: 241 LVESSFVNRDRTKRDNSRLLGNKLRRK 268
           LVESSFVNRDRTK++      N  +R+
Sbjct: 241 LVESSFVNRDRTKQEKGHKGKNSEKRQ 267

[Close]

BLAST of Pay0012552 vs. ExPASy TrEMBL
Match: A0A5D3BZI1 (Ty1-copia retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold675G00770 PE=4 SV=1)

HSP 1 Score: 491.1 bits (1263), Expect = 3.3e-135
Identity = 249/267 (93.26%), Postives = 256/267 (95.88%), Query Frame = 0


Query: 1   MSIKTSNKILPDLSKLEPLDGTNYRRWSQKLLIFFEQLEVDYVLTTDLPSSDPPTTTSTS 60
           MSIKTSNKILPDLSKLEPLDGTNYRRWSQKLLIFFEQLEVDYVLTTDLP+SDPPTTTSTS
Sbjct: 1   MSIKTSNKILPDLSKLEPLDGTNYRRWSQKLLIFFEQLEVDYVLTTDLPTSDPPTTTSTS 60

Query: 61  SNPESSTGPLTTVAVTDQVKKDQVIDPEKYAKDNKTVRGHLLNHMSDPMFDLFVVQKSAK 120
           S+PESSTGPLT VAVTDQVKKDQVIDPEKYAKDNKTVRGHLLNHMSDPMFDLFVVQKSAK
Sbjct: 61  SDPESSTGPLTAVAVTDQVKKDQVIDPEKYAKDNKTVRGHLLNHMSDPMFDLFVVQKSAK 120

Query: 121 DIWSTLESRYGGDDAGRKKYVVGKWLQFQMTDDKPVVEQIHEYENLVANVLSEDMKMCEI 180
           DIWSTLESRYGGDDAGRKKYVVGKWLQFQMTDDKPV+EQIHEYENLVANVLSE MKMCEI
Sbjct: 121 DIWSTLESRYGGDDAGRKKYVVGKWLQFQMTDDKPVMEQIHEYENLVANVLSEGMKMCEI 180

Query: 181 LQANVLLENFPPSWNDYRNHLKHKKKDLKLQELISHMRTEEANRLKDKLASQNLNSVNAN 240
           LQANVLLE FPPSWNDYRNHLKHKKKDLKLQELISHMRTEEANRLKDKLASQNLNSVNAN
Sbjct: 181 LQANVLLEKFPPSWNDYRNHLKHKKKDLKLQELISHMRTEEANRLKDKLASQNLNSVNAN 240

Query: 241 LVESSFVNRDRTKRDNSRLLGNKLRRK 268
           LVESSFVNRDRTK++      N  +R+
Sbjct: 241 LVESSFVNRDRTKQEKGHKGKNSEKRQ 267

[Close]

BLAST of Pay0012552 vs. ExPASy TrEMBL
Match: A0A5D3BZH6 (Ty1-copia retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold143G001760 PE=4 SV=1)

HSP 1 Score: 488.8 bits (1257), Expect = 1.6e-134
Identity = 248/267 (92.88%), Postives = 255/267 (95.51%), Query Frame = 0


Query: 1   MSIKTSNKILPDLSKLEPLDGTNYRRWSQKLLIFFEQLEVDYVLTTDLPSSDPPTTTSTS 60
           MSIKTSNKILPDLSKLEPLDGTNYRRWSQKLLIFFEQLEVDYVLTTDLP+SDPPTTTSTS
Sbjct: 1   MSIKTSNKILPDLSKLEPLDGTNYRRWSQKLLIFFEQLEVDYVLTTDLPTSDPPTTTSTS 60

Query: 61  SNPESSTGPLTTVAVTDQVKKDQVIDPEKYAKDNKTVRGHLLNHMSDPMFDLFVVQKSAK 120
           S+PESSTGPLT VAVTDQVKKDQVIDPEKYAKDNKTVRGHLLNHMSDPMFDLFVVQKSAK
Sbjct: 61  SDPESSTGPLTAVAVTDQVKKDQVIDPEKYAKDNKTVRGHLLNHMSDPMFDLFVVQKSAK 120

Query: 121 DIWSTLESRYGGDDAGRKKYVVGKWLQFQMTDDKPVVEQIHEYENLVANVLSEDMKMCEI 180
           DIWSTLESRYGGDDAGRKKYVVGKWLQFQMTDDKPVVEQIHEYENLVANVLSE MKMCEI
Sbjct: 121 DIWSTLESRYGGDDAGRKKYVVGKWLQFQMTDDKPVVEQIHEYENLVANVLSEGMKMCEI 180

Query: 181 LQANVLLENFPPSWNDYRNHLKHKKKDLKLQELISHMRTEEANRLKDKLASQNLNSVNAN 240
           LQANVLLE FPPSWNDYRNHLKHKKKDL+L ELISHMRTEEANRLKDKLASQNLNSVNAN
Sbjct: 181 LQANVLLEKFPPSWNDYRNHLKHKKKDLRLPELISHMRTEEANRLKDKLASQNLNSVNAN 240

Query: 241 LVESSFVNRDRTKRDNSRLLGNKLRRK 268
           LVESSFVNRDRTK++      N  +R+
Sbjct: 241 LVESSFVNRDRTKQEKGHKGKNSEKRQ 267

[Close]

BLAST of Pay0012552 vs. ExPASy TrEMBL
Match: A0A5A7VHG8 (Ty1-copia retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold271G001260 PE=4 SV=1)

HSP 1 Score: 487.3 bits (1253), Expect = 4.7e-134
Identity = 247/267 (92.51%), Postives = 254/267 (95.13%), Query Frame = 0


Query: 1   MSIKTSNKILPDLSKLEPLDGTNYRRWSQKLLIFFEQLEVDYVLTTDLPSSDPPTTTSTS 60
           MSIKTSNKILPDLSKLEPLDGTNYRRWSQKLLIFF+QLEVDYVLTTDLP+SDPPTTTSTS
Sbjct: 1   MSIKTSNKILPDLSKLEPLDGTNYRRWSQKLLIFFKQLEVDYVLTTDLPTSDPPTTTSTS 60

Query: 61  SNPESSTGPLTTVAVTDQVKKDQVIDPEKYAKDNKTVRGHLLNHMSDPMFDLFVVQKSAK 120
           S+PESSTGPLT VAVTDQVKKDQVIDPEKYAKDNKTVRGHLLNHMSDPMFDLFVVQKSAK
Sbjct: 61  SDPESSTGPLTAVAVTDQVKKDQVIDPEKYAKDNKTVRGHLLNHMSDPMFDLFVVQKSAK 120

Query: 121 DIWSTLESRYGGDDAGRKKYVVGKWLQFQMTDDKPVVEQIHEYENLVANVLSEDMKMCEI 180
           DIWSTLESRYGGDDAGRKKYVVGKWLQFQMTDDKPVVEQIHEYENLV NVLSE MKMCEI
Sbjct: 121 DIWSTLESRYGGDDAGRKKYVVGKWLQFQMTDDKPVVEQIHEYENLVTNVLSEGMKMCEI 180

Query: 181 LQANVLLENFPPSWNDYRNHLKHKKKDLKLQELISHMRTEEANRLKDKLASQNLNSVNAN 240
           LQANVLLE FPPSWNDYRNHLKHKKKDLKL ELISHMRTEEANRLKDKLASQNLNSVNAN
Sbjct: 181 LQANVLLEKFPPSWNDYRNHLKHKKKDLKLHELISHMRTEEANRLKDKLASQNLNSVNAN 240

Query: 241 LVESSFVNRDRTKRDNSRLLGNKLRRK 268
           LVESSFVNRDRTK++      N  +R+
Sbjct: 241 LVESSFVNRDRTKQEKGHKGKNSEKRQ 267

[Close]

BLAST of Pay0012552 vs. NCBI nr
Match: XP_008456453.1 (PREDICTED: uncharacterized protein LOC103496396 [Cucumis melo])

HSP 1 Score: 500.0 bits (1286), Expect = 1.4e-137
Identity = 260/290 (89.66%), Postives = 266/290 (91.72%), Query Frame = 0


Query: 1   MSIKTSNKILPDLSKLEPLDGTNYRRWSQKLLIFFEQLEVDYVLTTDLPSSDPPTTTSTS 60
           MSIKTSNKILPDLSKLEPLDGTNYRRWSQKLLIFFEQLEVDYVLTTDLPSSDPPTTTSTS
Sbjct: 1   MSIKTSNKILPDLSKLEPLDGTNYRRWSQKLLIFFEQLEVDYVLTTDLPSSDPPTTTSTS 60

Query: 61  SNPESSTGPLTTVAVTDQVKKDQVIDPEKYAKDNKTVRGHLLNHMSDPMFDLFVVQKSAK 120
           SNPESSTGPLTTVAVTDQVKKDQVIDPEKYAKDNKTVRGHLLNHMSDPMFDLFVVQKSAK
Sbjct: 61  SNPESSTGPLTTVAVTDQVKKDQVIDPEKYAKDNKTVRGHLLNHMSDPMFDLFVVQKSAK 120

Query: 121 DIWSTLESRYGGDDAGRKKYVVGKWLQFQMTDDKPVVEQIHEYENLVANVLSEDMKMCEI 180
           DIWSTLESRYGGDDAGRKKYVVGKWLQFQMTDDKPVVEQIHEYENLVANVLSEDMKMCEI
Sbjct: 121 DIWSTLESRYGGDDAGRKKYVVGKWLQFQMTDDKPVVEQIHEYENLVANVLSEDMKMCEI 180

Query: 181 LQANVLLENFPPSWNDYRNHLKHKKKDLKLQELISHMRTEEANRLKDKLASQNLNSVNAN 240
           LQANVLLENFPPSWNDYRNHLKHKKKDLKLQELISHMRTEEANRLKDKLASQNLNSVNAN
Sbjct: 181 LQANVLLENFPPSWNDYRNHLKHKKKDLKLQELISHMRTEEANRLKDKLASQNLNSVNAN 240

Query: 241 LVESSFVNRDRTKRDNSRLLGNKLRRKSWSATCAERKGTNHTNATRGKGG 291
           LVESSFVNRDRTK++     G K  ++ +  T  + K         GK G
Sbjct: 241 LVESSFVNRDRTKQEKWH-KGKKSEKRQFKTTGEQIKKKKLVCYVCGKEG 289

[Close]

BLAST of Pay0012552 vs. NCBI nr
Match: TYK04394.1 (ty1-copia retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 491.1 bits (1263), Expect = 6.7e-135
Identity = 249/267 (93.26%), Postives = 256/267 (95.88%), Query Frame = 0


Query: 1   MSIKTSNKILPDLSKLEPLDGTNYRRWSQKLLIFFEQLEVDYVLTTDLPSSDPPTTTSTS 60
           MSIKTSNKILPDLSKLEPLDGTNYRRWSQKLLIFFEQLEVDYVLTTDLP+SDPPTTTSTS
Sbjct: 1   MSIKTSNKILPDLSKLEPLDGTNYRRWSQKLLIFFEQLEVDYVLTTDLPTSDPPTTTSTS 60

Query: 61  SNPESSTGPLTTVAVTDQVKKDQVIDPEKYAKDNKTVRGHLLNHMSDPMFDLFVVQKSAK 120
           S+PESSTGPLT VAVTDQVKKDQVIDPEKYAKDNKTVRGHLLNHMSDPMFDLFVVQKSAK
Sbjct: 61  SDPESSTGPLTAVAVTDQVKKDQVIDPEKYAKDNKTVRGHLLNHMSDPMFDLFVVQKSAK 120

Query: 121 DIWSTLESRYGGDDAGRKKYVVGKWLQFQMTDDKPVVEQIHEYENLVANVLSEDMKMCEI 180
           DIWSTLESRYGGDDAGRKKYVVGKWLQFQMTDDKPV+EQIHEYENLVANVLSE MKMCEI
Sbjct: 121 DIWSTLESRYGGDDAGRKKYVVGKWLQFQMTDDKPVMEQIHEYENLVANVLSEGMKMCEI 180

Query: 181 LQANVLLENFPPSWNDYRNHLKHKKKDLKLQELISHMRTEEANRLKDKLASQNLNSVNAN 240
           LQANVLLE FPPSWNDYRNHLKHKKKDLKLQELISHMRTEEANRLKDKLASQNLNSVNAN
Sbjct: 181 LQANVLLEKFPPSWNDYRNHLKHKKKDLKLQELISHMRTEEANRLKDKLASQNLNSVNAN 240

Query: 241 LVESSFVNRDRTKRDNSRLLGNKLRRK 268
           LVESSFVNRDRTK++      N  +R+
Sbjct: 241 LVESSFVNRDRTKQEKGHKGKNSEKRQ 267

[Close]

BLAST of Pay0012552 vs. NCBI nr
Match: KAA0051006.1 (ty1-copia retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 491.1 bits (1263), Expect = 6.7e-135
Identity = 249/267 (93.26%), Postives = 256/267 (95.88%), Query Frame = 0


Query: 1   MSIKTSNKILPDLSKLEPLDGTNYRRWSQKLLIFFEQLEVDYVLTTDLPSSDPPTTTSTS 60
           MSIKTSNKILPDLSKLEPLDGTNYRRWSQKLLIFFEQLEVDYVLTTDLP+SDPPTTTSTS
Sbjct: 1   MSIKTSNKILPDLSKLEPLDGTNYRRWSQKLLIFFEQLEVDYVLTTDLPTSDPPTTTSTS 60

Query: 61  SNPESSTGPLTTVAVTDQVKKDQVIDPEKYAKDNKTVRGHLLNHMSDPMFDLFVVQKSAK 120
           S+PESSTGPLT VAVTDQVKKDQVIDPEKYAKDNKTVRGHLLNHMSDPMFDLFVVQKSAK
Sbjct: 61  SDPESSTGPLTAVAVTDQVKKDQVIDPEKYAKDNKTVRGHLLNHMSDPMFDLFVVQKSAK 120

Query: 121 DIWSTLESRYGGDDAGRKKYVVGKWLQFQMTDDKPVVEQIHEYENLVANVLSEDMKMCEI 180
           DIWSTLESRYGGDDAGRKKYVVGKWLQFQMTDDKPV+EQIHEYENLVANVLSE MKMCEI
Sbjct: 121 DIWSTLESRYGGDDAGRKKYVVGKWLQFQMTDDKPVMEQIHEYENLVANVLSEGMKMCEI 180

Query: 181 LQANVLLENFPPSWNDYRNHLKHKKKDLKLQELISHMRTEEANRLKDKLASQNLNSVNAN 240
           LQANVLLE FPPSWNDYRNHLKHKKKDLKLQELISHMRTEEANRLKDKLASQNLNSVNAN
Sbjct: 181 LQANVLLEKFPPSWNDYRNHLKHKKKDLKLQELISHMRTEEANRLKDKLASQNLNSVNAN 240

Query: 241 LVESSFVNRDRTKRDNSRLLGNKLRRK 268
           LVESSFVNRDRTK++      N  +R+
Sbjct: 241 LVESSFVNRDRTKQEKGHKGKNSEKRQ 267

[Close]

BLAST of Pay0012552 vs. NCBI nr
Match: TYK04957.1 (ty1-copia retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 488.8 bits (1257), Expect = 3.3e-134
Identity = 248/267 (92.88%), Postives = 255/267 (95.51%), Query Frame = 0


Query: 1   MSIKTSNKILPDLSKLEPLDGTNYRRWSQKLLIFFEQLEVDYVLTTDLPSSDPPTTTSTS 60
           MSIKTSNKILPDLSKLEPLDGTNYRRWSQKLLIFFEQLEVDYVLTTDLP+SDPPTTTSTS
Sbjct: 1   MSIKTSNKILPDLSKLEPLDGTNYRRWSQKLLIFFEQLEVDYVLTTDLPTSDPPTTTSTS 60

Query: 61  SNPESSTGPLTTVAVTDQVKKDQVIDPEKYAKDNKTVRGHLLNHMSDPMFDLFVVQKSAK 120
           S+PESSTGPLT VAVTDQVKKDQVIDPEKYAKDNKTVRGHLLNHMSDPMFDLFVVQKSAK
Sbjct: 61  SDPESSTGPLTAVAVTDQVKKDQVIDPEKYAKDNKTVRGHLLNHMSDPMFDLFVVQKSAK 120

Query: 121 DIWSTLESRYGGDDAGRKKYVVGKWLQFQMTDDKPVVEQIHEYENLVANVLSEDMKMCEI 180
           DIWSTLESRYGGDDAGRKKYVVGKWLQFQMTDDKPVVEQIHEYENLVANVLSE MKMCEI
Sbjct: 121 DIWSTLESRYGGDDAGRKKYVVGKWLQFQMTDDKPVVEQIHEYENLVANVLSEGMKMCEI 180

Query: 181 LQANVLLENFPPSWNDYRNHLKHKKKDLKLQELISHMRTEEANRLKDKLASQNLNSVNAN 240
           LQANVLLE FPPSWNDYRNHLKHKKKDL+L ELISHMRTEEANRLKDKLASQNLNSVNAN
Sbjct: 181 LQANVLLEKFPPSWNDYRNHLKHKKKDLRLPELISHMRTEEANRLKDKLASQNLNSVNAN 240

Query: 241 LVESSFVNRDRTKRDNSRLLGNKLRRK 268
           LVESSFVNRDRTK++      N  +R+
Sbjct: 241 LVESSFVNRDRTKQEKGHKGKNSEKRQ 267

[Close]

BLAST of Pay0012552 vs. NCBI nr
Match: KAA0066784.1 (ty1-copia retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 487.3 bits (1253), Expect = 9.7e-134
Identity = 247/267 (92.51%), Postives = 254/267 (95.13%), Query Frame = 0


Query: 1   MSIKTSNKILPDLSKLEPLDGTNYRRWSQKLLIFFEQLEVDYVLTTDLPSSDPPTTTSTS 60
           MSIKTSNKILPDLSKLEPLDGTNYRRWSQKLLIFF+QLEVDYVLTTDLP+SDPPTTTSTS
Sbjct: 1   MSIKTSNKILPDLSKLEPLDGTNYRRWSQKLLIFFKQLEVDYVLTTDLPTSDPPTTTSTS 60

Query: 61  SNPESSTGPLTTVAVTDQVKKDQVIDPEKYAKDNKTVRGHLLNHMSDPMFDLFVVQKSAK 120
           S+PESSTGPLT VAVTDQVKKDQVIDPEKYAKDNKTVRGHLLNHMSDPMFDLFVVQKSAK
Sbjct: 61  SDPESSTGPLTAVAVTDQVKKDQVIDPEKYAKDNKTVRGHLLNHMSDPMFDLFVVQKSAK 120

Query: 121 DIWSTLESRYGGDDAGRKKYVVGKWLQFQMTDDKPVVEQIHEYENLVANVLSEDMKMCEI 180
           DIWSTLESRYGGDDAGRKKYVVGKWLQFQMTDDKPVVEQIHEYENLV NVLSE MKMCEI
Sbjct: 121 DIWSTLESRYGGDDAGRKKYVVGKWLQFQMTDDKPVVEQIHEYENLVTNVLSEGMKMCEI 180

Query: 181 LQANVLLENFPPSWNDYRNHLKHKKKDLKLQELISHMRTEEANRLKDKLASQNLNSVNAN 240
           LQANVLLE FPPSWNDYRNHLKHKKKDLKL ELISHMRTEEANRLKDKLASQNLNSVNAN
Sbjct: 181 LQANVLLEKFPPSWNDYRNHLKHKKKDLKLHELISHMRTEEANRLKDKLASQNLNSVNAN 240

Query: 241 LVESSFVNRDRTKRDNSRLLGNKLRRK 268
           LVESSFVNRDRTK++      N  +R+
Sbjct: 241 LVESSFVNRDRTKQEKGHKGKNSEKRQ 267

[Close]

BLAST of Pay0012552 vs. TAIR 10
Match: AT4G00980.1 (zinc knuckle (CCHC-type) family protein )

HSP 1 Score: 91.7 bits (226), Expect = 1.1e-18
Identity = 53/208 (25.48%), Postives = 111/208 (53.37%), Query Frame = 0


Query: 15  KLEPLDGTNYRRWSQKLLIFFEQLEVDYVLTTDLPSSDPPTTTSTSSNPESSTGPLTTVA 74
           K+   DG +Y  W+ ++ +F +QL++ YVL      S+P  +  +S  PE++   +T   
Sbjct: 194 KISRFDGKSYLYWASQMELFLKQLKLTYVL------SEPCPSIGSSQGPETNPREITRAD 253

Query: 75  VTDQVKKDQVIDPEKYAKDNKTVRGHLLNHMSDPMFDLFVVQ-KSAKDIWSTLESRYGGD 134
            T           +K+ +D+     HL+N +SD ++  +  + K AK++W  L+  Y  D
Sbjct: 254 ATG----------KKWLRDDYLCYTHLMNSLSDHLYRRYSQKFKHAKELWDELKWVYQCD 313

Query: 135 DAGRKKYVVGKWLQFQMTDDKPVVEQIHEYENLVANVLSEDMKMCEILQANVLLENFPPS 194
           ++  K+  V K+++F+M +++P++EQ+  +  +  +++S  M + E    + ++  FPPS
Sbjct: 314 ESKSKRSQVRKYIEFRMVEERPILEQVQVFNKIADSIVSAGMFLDEAFHVSTIISKFPPS 373

Query: 195 WNDYRNHLKHKKKDLKLQELISHMRTEE 222
           W  +   L  +++ L +  L+  ++ EE
Sbjct: 374 WRGFCTRLM-EEEYLPVWMLMERVKAEE 384

The following BLAST results are available for this feature:

BLAST of Pay0012552 vs.


Match Name	E-value	Identity	Description

BLAST of Pay0012552 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S3C3Z1	7.0e-138	89.66	uncharacterized protein LOC103496396 OS=Cucumis melo OX=3656 GN=LOC103496396 PE=...	[more]
A0A5A7U9X9	3.3e-135	93.26	Ty1-copia retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C2...	[more]
A0A5D3BZI1	3.3e-135	93.26	Ty1-copia retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E567...	[more]
A0A5D3BZH6	1.6e-134	92.88	Ty1-copia retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E567...	[more]
A0A5A7VHG8	4.7e-134	92.51	Ty1-copia retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C2...	[more]

BLAST of Pay0012552 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008456453.1	1.4e-137	89.66	PREDICTED: uncharacterized protein LOC103496396 [Cucumis melo]	[more]
TYK04394.1	6.7e-135	93.26	ty1-copia retrotransposon protein [Cucumis melo var. makuwa]	[more]
KAA0051006.1	6.7e-135	93.26	ty1-copia retrotransposon protein [Cucumis melo var. makuwa]	[more]
TYK04957.1	3.3e-134	92.88	ty1-copia retrotransposon protein [Cucumis melo var. makuwa]	[more]
KAA0066784.1	9.7e-134	92.51	ty1-copia retrotransposon protein [Cucumis melo var. makuwa]	[more]

BLAST of Pay0012552 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G00980.1	1.1e-18	25.48	zinc knuckle (CCHC-type) family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (Payzawat) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PFAM	PF14223	Retrotran_gag_2	coord: 92..224 e-value: 3.1E-18 score: 65.9
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 46..70
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 275..300
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 275..290
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 48..70
None	No IPR available	PANTHER	PTHR47592:SF14	GAG-POL POLYPROTEIN-LIKE PROTEIN	coord: 41..256
None	No IPR available	PANTHER	PTHR47592	PBF68 PROTEIN	coord: 41..256

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Pay0012552.1	Pay0012552.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015074	DNA integration
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0008270	zinc ion binding