Pay0012417 (gene) Melon (Payzawat) v1

Overview


Name	Pay0012417
Type	gene
Organism	Cucumis melo L. var. inodorus cv. Payzawat (Melon (Payzawat) v1)
Description	PMD domain-containing protein
Location	chr08: 22605407 .. 22606165 (-)
RNA-Seq Expression	Pay0012417
Synteny	Pay0012417

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCAAGTATATATGAGGTTACAGTCTCCTCGACATCCTGCTTTTTTTACTGTCAGCTTCTGGTGTTTGTTCATGATAGACGATGCAACTCTATCATGACGTCCTCCTGTTTCTTAGGGTTTGTTCATGATAGACGATGCAACTCTACCATGACGCCATCTTGTTTCTTAGGGTTTGTTCATGATAGACGATACAACTCTATCATGACACCCTTCTCCATCACTTTGCTTTCATATATTCTTTGTTCCAAGACCATGTCATCAGCACTAACTTGCTTTTGTGATTTTATTTTGCAGAACGATGATTTACTTCACAGAACGATTCTTGTTTGGAGTCCGACACCTTGTAGTATTTTATGATAGAAATCAACTAAGAGAAGATGGACTTAGTCTCCTTGTGGAGAAGCCATGGACTGGCTCTTTTGCAGATCATTGGCCACGCTTAGACAACAGCTCAATTCTTCCCAGATTGTCTGTGGAGATACCTTTATTTGAGGGAAAAACTGCATGGGTCCTACAGTCTTCTATCCATAACGAGGATCCTAATTCTGACAGAGTTCTCACTCTCGGACAACATTTAATTGAAGGCCAAACACGTTGGGGCACTATGACCAAGGTCCCTAGAGAGTTCTGCTTTACTGATTGCTATTGGGAGTGGCTAGAGCTTGTAGTTGGTCGAAATGCGCGACTTCTTTATAGTGCTTGTTTATATGATGTCGTAACAACTTATTTCTACACTTATGATCGTAATAGTGATTAG

mRNA sequence

ATGCAAGTATATATGAGAACGATGATTTACTTCACAGAACGATTCTTGTTTGGAGTCCGACACCTTGTAGTATTTTATGATAGAAATCAACTAAGAGAAGATGGACTTAGTCTCCTTGTGGAGAAGCCATGGACTGGCTCTTTTGCAGATCATTGGCCACGCTTAGACAACAGCTCAATTCTTCCCAGATTGTCTGTGGAGATACCTTTATTTGAGGGAAAAACTGCATGGGTCCTACAGTCTTCTATCCATAACGAGGATCCTAATTCTGACAGAGTTCTCACTCTCGGACAACATTTAATTGAAGGCCAAACACGTTGGGGCACTATGACCAAGGTCCCTAGAGAGTTCTGCTTTACTGATTGCTATTGGGAGTGGCTAGAGCTTGTAGTTGGTCGAAATGCGCGACTTCTTTATAGTGCTTGTTTATATGATGTCGTAACAACTTATTTCTACACTTATGATCGTAATAGTGATTAG

Coding sequence (CDS)

ATGCAAGTATATATGAGAACGATGATTTACTTCACAGAACGATTCTTGTTTGGAGTCCGACACCTTGTAGTATTTTATGATAGAAATCAACTAAGAGAAGATGGACTTAGTCTCCTTGTGGAGAAGCCATGGACTGGCTCTTTTGCAGATCATTGGCCACGCTTAGACAACAGCTCAATTCTTCCCAGATTGTCTGTGGAGATACCTTTATTTGAGGGAAAAACTGCATGGGTCCTACAGTCTTCTATCCATAACGAGGATCCTAATTCTGACAGAGTTCTCACTCTCGGACAACATTTAATTGAAGGCCAAACACGTTGGGGCACTATGACCAAGGTCCCTAGAGAGTTCTGCTTTACTGATTGCTATTGGGAGTGGCTAGAGCTTGTAGTTGGTCGAAATGCGCGACTTCTTTATAGTGCTTGTTTATATGATGTCGTAACAACTTATTTCTACACTTATGATCGTAATAGTGATTAG

Protein sequence

MQVYMRTMIYFTERFLFGVRHLVVFYDRNQLREDGLSLLVEKPWTGSFADHWPRLDNSSILPRLSVEIPLFEGKTAWVLQSSIHNEDPNSDRVLTLGQHLIEGQTRWGTMTKVPREFCFTDCYWEWLELVVGRNARLLYSACLYDVVTTYFYTYDRNSD

Homology

[Close]

BLAST of Pay0012417 vs. ExPASy TrEMBL
Match: A0A1S3B4Q9 (uncharacterized protein LOC103486002 OS=Cucumis melo OX=3656 GN=LOC103486002 PE=4 SV=1)

HSP 1 Score: 342.0 bits (876), Expect = 1.3e-90
Identity = 159/159 (100.00%), Postives = 159/159 (100.00%), Query Frame = 0


Query: 1   MQVYMRTMIYFTERFLFGVRHLVVFYDRNQLREDGLSLLVEKPWTGSFADHWPRLDNSSI 60
           MQVYMRTMIYFTERFLFGVRHLVVFYDRNQLREDGLSLLVEKPWTGSFADHWPRLDNSSI
Sbjct: 1   MQVYMRTMIYFTERFLFGVRHLVVFYDRNQLREDGLSLLVEKPWTGSFADHWPRLDNSSI 60

Query: 61  LPRLSVEIPLFEGKTAWVLQSSIHNEDPNSDRVLTLGQHLIEGQTRWGTMTKVPREFCFT 120
           LPRLSVEIPLFEGKTAWVLQSSIHNEDPNSDRVLTLGQHLIEGQTRWGTMTKVPREFCFT
Sbjct: 61  LPRLSVEIPLFEGKTAWVLQSSIHNEDPNSDRVLTLGQHLIEGQTRWGTMTKVPREFCFT 120

Query: 121 DCYWEWLELVVGRNARLLYSACLYDVVTTYFYTYDRNSD 160
           DCYWEWLELVVGRNARLLYSACLYDVVTTYFYTYDRNSD
Sbjct: 121 DCYWEWLELVVGRNARLLYSACLYDVVTTYFYTYDRNSD 159

[Close]

BLAST of Pay0012417 vs. ExPASy TrEMBL
Match: A0A5D3DTH1 (Putative mitochondrial protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold95G00330 PE=4 SV=1)

HSP 1 Score: 331.6 bits (849), Expect = 1.8e-87
Identity = 153/156 (98.08%), Postives = 155/156 (99.36%), Query Frame = 0


Query: 4   YMRTMIYFTERFLFGVRHLVVFYDRNQLREDGLSLLVEKPWTGSFADHWPRLDNSSILPR 63
           ++ TMIYFTERFLFGVRHLVVFYDRNQLREDGLSLLVEKPWTGSFADHWPRLDNSSILPR
Sbjct: 24  FLGTMIYFTERFLFGVRHLVVFYDRNQLREDGLSLLVEKPWTGSFADHWPRLDNSSILPR 83

Query: 64  LSVEIPLFEGKTAWVLQSSIHNEDPNSDRVLTLGQHLIEGQTRWGTMTKVPREFCFTDCY 123
           LSVEIPLFEGKTAWVLQSSIHNEDPNSDRVLTLGQHLIEGQTRWGTMTKVPREFCFTDCY
Sbjct: 84  LSVEIPLFEGKTAWVLQSSIHNEDPNSDRVLTLGQHLIEGQTRWGTMTKVPREFCFTDCY 143

Query: 124 WEWLELVVGRNARLLYSACLYDVVTTYFYTYDRNSD 160
           WEWLELVVGRNARLLYSACLYDVVTTYFYTYDRNSD
Sbjct: 144 WEWLELVVGRNARLLYSACLYDVVTTYFYTYDRNSD 179

[Close]

BLAST of Pay0012417 vs. ExPASy TrEMBL
Match: A0A5A7U8L3 (PMD domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold175G001600 PE=4 SV=1)

HSP 1 Score: 274.2 bits (700), Expect = 3.3e-70
Identity = 125/152 (82.24%), Postives = 134/152 (88.16%), Query Frame = 0


Query: 8   MIYFTERFLFGVRHLVVFYDRNQLREDGLSLLVEKPWTGSFADHWPRLDNSSILPRLSVE 67
           M+YFTERFL GVRHLV+  DRNQ REDGLSL++EKPW G+FADHWPRLDN+S+LPRLSVE
Sbjct: 1   MVYFTERFLSGVRHLVILSDRNQPREDGLSLIMEKPWAGAFADHWPRLDNNSVLPRLSVE 60

Query: 68  IPLFEGKTAWVLQSSIHNEDPNSDRVLTLGQHLIEGQTRWGTMTKVPREFCFTDCYWEWL 127
           IPL EGK+AW+LQSSIHNE PNS R LTLGQ LIEGQTRWGTMTKVP EFCFTDCYWEWL
Sbjct: 61  IPLSEGKSAWILQSSIHNEAPNSGRALTLGQRLIEGQTRWGTMTKVPGEFCFTDCYWEWL 120

Query: 128 ELVVGRNARLLYSACLYDVVTTYFYTYDRNSD 160
           ELVVGRN RLLYS  LY  VTT  YTYDRNSD
Sbjct: 121 ELVVGRNTRLLYSTRLYGTVTTSLYTYDRNSD 152

[Close]

BLAST of Pay0012417 vs. ExPASy TrEMBL
Match: A0A5A7VHW8 (PMD domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold17G00370 PE=4 SV=1)

HSP 1 Score: 272.7 bits (696), Expect = 9.7e-70
Identity = 124/152 (81.58%), Postives = 134/152 (88.16%), Query Frame = 0


Query: 8   MIYFTERFLFGVRHLVVFYDRNQLREDGLSLLVEKPWTGSFADHWPRLDNSSILPRLSVE 67
           M+YFTERFL GVRHLV+  DRNQ REDGLSL+VEKPW G+FADHWPRLDN+S+LPRLSVE
Sbjct: 1   MVYFTERFLSGVRHLVILSDRNQPREDGLSLIVEKPWAGAFADHWPRLDNNSVLPRLSVE 60

Query: 68  IPLFEGKTAWVLQSSIHNEDPNSDRVLTLGQHLIEGQTRWGTMTKVPREFCFTDCYWEWL 127
           IPL EGK+AW+LQSSIH+E PNS R LTLGQ LIEGQTRWGT+TKVPREFCFTDCYWEWL
Sbjct: 61  IPLSEGKSAWILQSSIHHEAPNSGRALTLGQRLIEGQTRWGTVTKVPREFCFTDCYWEWL 120

Query: 128 ELVVGRNARLLYSACLYDVVTTYFYTYDRNSD 160
           ELVVGRN RLLYS  LY  VT   YTYDRNSD
Sbjct: 121 ELVVGRNTRLLYSTRLYGAVTASLYTYDRNSD 152

[Close]

BLAST of Pay0012417 vs. ExPASy TrEMBL
Match: A0A5A7TZN9 (Putative mitochondrial protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold216G001160 PE=4 SV=1)

HSP 1 Score: 271.9 bits (694), Expect = 1.6e-69
Identity = 125/153 (81.70%), Postives = 133/153 (86.93%), Query Frame = 0


Query: 7   TMIYFTERFLFGVRHLVVFYDRNQLREDGLSLLVEKPWTGSFADHWPRLDNSSILPRLSV 66
           TM+YFTERFL GVRHL++  DRNQ REDGLSL+VEK W G+FADHWP LDN+S+LPRLSV
Sbjct: 16  TMVYFTERFLSGVRHLIILSDRNQPREDGLSLIVEKSWAGAFADHWPHLDNNSVLPRLSV 75

Query: 67  EIPLFEGKTAWVLQSSIHNEDPNSDRVLTLGQHLIEGQTRWGTMTKVPREFCFTDCYWEW 126
           EIPL EGK+AWVLQSSIHNE PNS R LTLGQ LIEGQTRWGTMTKVP EFCFTDCYWEW
Sbjct: 76  EIPLSEGKSAWVLQSSIHNEAPNSGRALTLGQRLIEGQTRWGTMTKVPGEFCFTDCYWEW 135

Query: 127 LELVVGRNARLLYSACLYDVVTTYFYTYDRNSD 160
           LELVVGRN RLLYS  LY VVT   YTYDRNSD
Sbjct: 136 LELVVGRNTRLLYSTRLYGVVTASLYTYDRNSD 168

[Close]

BLAST of Pay0012417 vs. NCBI nr
Match: XP_008442010.1 (PREDICTED: uncharacterized protein LOC103486002 [Cucumis melo])

HSP 1 Score: 342.0 bits (876), Expect = 2.7e-90
Identity = 159/159 (100.00%), Postives = 159/159 (100.00%), Query Frame = 0


Query: 1   MQVYMRTMIYFTERFLFGVRHLVVFYDRNQLREDGLSLLVEKPWTGSFADHWPRLDNSSI 60
           MQVYMRTMIYFTERFLFGVRHLVVFYDRNQLREDGLSLLVEKPWTGSFADHWPRLDNSSI
Sbjct: 1   MQVYMRTMIYFTERFLFGVRHLVVFYDRNQLREDGLSLLVEKPWTGSFADHWPRLDNSSI 60

Query: 61  LPRLSVEIPLFEGKTAWVLQSSIHNEDPNSDRVLTLGQHLIEGQTRWGTMTKVPREFCFT 120
           LPRLSVEIPLFEGKTAWVLQSSIHNEDPNSDRVLTLGQHLIEGQTRWGTMTKVPREFCFT
Sbjct: 61  LPRLSVEIPLFEGKTAWVLQSSIHNEDPNSDRVLTLGQHLIEGQTRWGTMTKVPREFCFT 120

Query: 121 DCYWEWLELVVGRNARLLYSACLYDVVTTYFYTYDRNSD 160
           DCYWEWLELVVGRNARLLYSACLYDVVTTYFYTYDRNSD
Sbjct: 121 DCYWEWLELVVGRNARLLYSACLYDVVTTYFYTYDRNSD 159

[Close]

BLAST of Pay0012417 vs. NCBI nr
Match: KAA0041757.1 (putative mitochondrial protein [Cucumis melo var. makuwa] >TYK27047.1 putative mitochondrial protein [Cucumis melo var. makuwa])

HSP 1 Score: 331.6 bits (849), Expect = 3.6e-87
Identity = 153/156 (98.08%), Postives = 155/156 (99.36%), Query Frame = 0


Query: 4   YMRTMIYFTERFLFGVRHLVVFYDRNQLREDGLSLLVEKPWTGSFADHWPRLDNSSILPR 63
           ++ TMIYFTERFLFGVRHLVVFYDRNQLREDGLSLLVEKPWTGSFADHWPRLDNSSILPR
Sbjct: 24  FLGTMIYFTERFLFGVRHLVVFYDRNQLREDGLSLLVEKPWTGSFADHWPRLDNSSILPR 83

Query: 64  LSVEIPLFEGKTAWVLQSSIHNEDPNSDRVLTLGQHLIEGQTRWGTMTKVPREFCFTDCY 123
           LSVEIPLFEGKTAWVLQSSIHNEDPNSDRVLTLGQHLIEGQTRWGTMTKVPREFCFTDCY
Sbjct: 84  LSVEIPLFEGKTAWVLQSSIHNEDPNSDRVLTLGQHLIEGQTRWGTMTKVPREFCFTDCY 143

Query: 124 WEWLELVVGRNARLLYSACLYDVVTTYFYTYDRNSD 160
           WEWLELVVGRNARLLYSACLYDVVTTYFYTYDRNSD
Sbjct: 144 WEWLELVVGRNARLLYSACLYDVVTTYFYTYDRNSD 179

[Close]

BLAST of Pay0012417 vs. NCBI nr
Match: KAA0050516.1 (hypothetical protein E6C27_scaffold175G001600 [Cucumis melo var. makuwa])

HSP 1 Score: 274.2 bits (700), Expect = 6.9e-70
Identity = 125/152 (82.24%), Postives = 134/152 (88.16%), Query Frame = 0


Query: 8   MIYFTERFLFGVRHLVVFYDRNQLREDGLSLLVEKPWTGSFADHWPRLDNSSILPRLSVE 67
           M+YFTERFL GVRHLV+  DRNQ REDGLSL++EKPW G+FADHWPRLDN+S+LPRLSVE
Sbjct: 1   MVYFTERFLSGVRHLVILSDRNQPREDGLSLIMEKPWAGAFADHWPRLDNNSVLPRLSVE 60

Query: 68  IPLFEGKTAWVLQSSIHNEDPNSDRVLTLGQHLIEGQTRWGTMTKVPREFCFTDCYWEWL 127
           IPL EGK+AW+LQSSIHNE PNS R LTLGQ LIEGQTRWGTMTKVP EFCFTDCYWEWL
Sbjct: 61  IPLSEGKSAWILQSSIHNEAPNSGRALTLGQRLIEGQTRWGTMTKVPGEFCFTDCYWEWL 120

Query: 128 ELVVGRNARLLYSACLYDVVTTYFYTYDRNSD 160
           ELVVGRN RLLYS  LY  VTT  YTYDRNSD
Sbjct: 121 ELVVGRNTRLLYSTRLYGTVTTSLYTYDRNSD 152

[Close]

BLAST of Pay0012417 vs. NCBI nr
Match: KAA0065375.1 (hypothetical protein E6C27_scaffold17G00370 [Cucumis melo var. makuwa])

HSP 1 Score: 272.7 bits (696), Expect = 2.0e-69
Identity = 124/152 (81.58%), Postives = 134/152 (88.16%), Query Frame = 0


Query: 8   MIYFTERFLFGVRHLVVFYDRNQLREDGLSLLVEKPWTGSFADHWPRLDNSSILPRLSVE 67
           M+YFTERFL GVRHLV+  DRNQ REDGLSL+VEKPW G+FADHWPRLDN+S+LPRLSVE
Sbjct: 1   MVYFTERFLSGVRHLVILSDRNQPREDGLSLIVEKPWAGAFADHWPRLDNNSVLPRLSVE 60

Query: 68  IPLFEGKTAWVLQSSIHNEDPNSDRVLTLGQHLIEGQTRWGTMTKVPREFCFTDCYWEWL 127
           IPL EGK+AW+LQSSIH+E PNS R LTLGQ LIEGQTRWGT+TKVPREFCFTDCYWEWL
Sbjct: 61  IPLSEGKSAWILQSSIHHEAPNSGRALTLGQRLIEGQTRWGTVTKVPREFCFTDCYWEWL 120

Query: 128 ELVVGRNARLLYSACLYDVVTTYFYTYDRNSD 160
           ELVVGRN RLLYS  LY  VT   YTYDRNSD
Sbjct: 121 ELVVGRNTRLLYSTRLYGAVTASLYTYDRNSD 152

[Close]

BLAST of Pay0012417 vs. NCBI nr
Match: KAA0047478.1 (hypothetical protein E6C27_scaffold498G00950 [Cucumis melo var. makuwa])

HSP 1 Score: 271.9 bits (694), Expect = 3.4e-69
Identity = 124/152 (81.58%), Postives = 133/152 (87.50%), Query Frame = 0


Query: 8   MIYFTERFLFGVRHLVVFYDRNQLREDGLSLLVEKPWTGSFADHWPRLDNSSILPRLSVE 67
           M+YFTERFL GVRHLV+  DRNQ REDGLSL+VEKPW G+FADHWPRLDN+S+LPRLSVE
Sbjct: 1   MVYFTERFLSGVRHLVILSDRNQPREDGLSLIVEKPWAGAFADHWPRLDNNSVLPRLSVE 60

Query: 68  IPLFEGKTAWVLQSSIHNEDPNSDRVLTLGQHLIEGQTRWGTMTKVPREFCFTDCYWEWL 127
           +PL EGK+AWVLQSSIHNE PNS R LTLGQ LIEGQTRWGT+TKVP EFCFTDCYWEWL
Sbjct: 61  VPLSEGKSAWVLQSSIHNEAPNSGRALTLGQRLIEGQTRWGTVTKVPGEFCFTDCYWEWL 120

Query: 128 ELVVGRNARLLYSACLYDVVTTYFYTYDRNSD 160
           ELVVGRN RLLYS  LY  VT   YTYDRNSD
Sbjct: 121 ELVVGRNTRLLYSTRLYGAVTASLYTYDRNSD 152

The following BLAST results are available for this feature:

BLAST of Pay0012417 vs.


Match Name	E-value	Identity	Description

BLAST of Pay0012417 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S3B4Q9	1.3e-90	100.00	uncharacterized protein LOC103486002 OS=Cucumis melo OX=3656 GN=LOC103486002 PE=...	[more]
A0A5D3DTH1	1.8e-87	98.08	Putative mitochondrial protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_s...	[more]
A0A5A7U8L3	3.3e-70	82.24	PMD domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_sc...	[more]
A0A5A7VHW8	9.7e-70	81.58	PMD domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_sc...	[more]
A0A5A7TZN9	1.6e-69	81.70	Putative mitochondrial protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_s...	[more]

BLAST of Pay0012417 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008442010.1	2.7e-90	100.00	PREDICTED: uncharacterized protein LOC103486002 [Cucumis melo]	[more]
KAA0041757.1	3.6e-87	98.08	putative mitochondrial protein [Cucumis melo var. makuwa] >TYK27047.1 putative m...	[more]
KAA0050516.1	6.9e-70	82.24	hypothetical protein E6C27_scaffold175G001600 [Cucumis melo var. makuwa]	[more]
KAA0065375.1	2.0e-69	81.58	hypothetical protein E6C27_scaffold17G00370 [Cucumis melo var. makuwa]	[more]
KAA0047478.1	3.4e-69	81.58	hypothetical protein E6C27_scaffold498G00950 [Cucumis melo var. makuwa]	[more]

BLAST of Pay0012417 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (Payzawat) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR36607	1,2-DIHYDROXY-3-KETO-5-METHYLTHIOPENTENE DIOXYGENASE 4	coord: 34..158
None	No IPR available	PANTHER	PTHR36607:SF20	1,2-DIHYDROXY-3-KETO-5-METHYLTHIOPENTENE DIOXYGENASE 4	coord: 34..158

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Pay0012417.1	Pay0012417.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane