Pay0012185 (gene) Melon (Payzawat) v1

Overview


Name	Pay0012185
Type	gene
Organism	Cucumis melo L. var. inodorus cv. Payzawat (Melon (Payzawat) v1)
Description	valencene synthase-like
Location	chr06: 27908619 .. 27909661 (+)
RNA-Seq Expression	Pay0012185
Synteny	Pay0012185

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexonpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAAGTGGCTTTAGCTAGTTCAGGTTATGAACTACTTTCAACTATTTCATTTGTTTGCATGGGTGACATTGCAACAAAGGAAGTATTTGATTGGCTATTTGATTGTCCCAAAATTCTTAAAGCCTCAACCACCATTTCTAGACTCATGGATGATGTTGTCTCCTATAAGGTATGCGTGTCCCTCTCTCTACGTCAAATAATAAGTCAATTATTTTTAAATCAATGTACTATTTACTTCTTTTCCTTTTTATTTTTAATTTGAGAATGAAACAGCACATGTTTCTTCGGTTGAATGTTACATGATTGTCATGGACGCTTAAAAATCTAAGCTTGTACTAAGTTACTTAAGCAAGAAGAAGAGATGCATGGAAGGCTAAAAATGAATGTTTCTTTCATCAAATGACGGTTTCAATATCATTTTTAACTTTTGTATATTAAATCTCACAAGAGTTATAACTCTACTTTATTTCGATGAAAAGATGGATTTACAAATTCTTAAGGACAGGACTAAACCTTATTCAGTCTCTACTTATTGATCCATTGCTAATTATTAACTAGAGTCTATTAATGATACACCCAAATTGCTAGTAGTGACAGGTCTATCATAAATAGATGAGGCGTTTGCAAAATAGCAAAAAAAATTAGGATAATAAAGCCATATTAGTACATTTTCTAAATTGCAAAAATAGCAAATTTTAAAAGTTGATAGCTATCTGATAACCCTTTGATAGTCTTTCGATATATCTAATTAATATGAAAACATTTTTTTAAAAAAATAAAATTTATCATCTAATGCCCAATTTTCTTAAATAAATTTTATTACATTTATGTTATTTAAAAATGTTAAAATATATTTAATTATTAATGCTCCAAAATGTTTTTCATTCTAAAGTGTAGCAGATATTCTGACTGCTCTTTTCTTTACATCAAGAAGTTTTTTCTTTTTTTCTTTTCTGAATAATTAAATGTTAGGAATCGTGGAGTACAAGACTCCAAATTATTTATTTATTTATTTATTTATTATTATTATTTTTTGCTTAA

mRNA sequence

ATGGAAGTGGCTTTAGCTAGTTCAGGTTATGAACTACTTTCAACTATTTCATTTGTTTGCATGGGTGACATTGCAACAAAGGAAGTATTTGATTGGCTATTTGATTGTCCCAAAATTCTTAAAGCCTCAACCACCATTTCTAGACTCATGGATGATGTTGTCTCCTATAAGGAATCGTGGAGTACAAGACTCCAAATTATTTATTTATTTATTTATTTATTATTATTATTTTTTGCTTAA

Coding sequence (CDS)

ATGGAAGTGGCTTTAGCTAGTTCAGGTTATGAACTACTTTCAACTATTTCATTTGTTTGCATGGGTGACATTGCAACAAAGGAAGTATTTGATTGGCTATTTGATTGTCCCAAAATTCTTAAAGCCTCAACCACCATTTCTAGACTCATGGATGATGTTGTCTCCTATAAGGAATCGTGGAGTACAAGACTCCAAATTATTTATTTATTTATTTATTTATTATTATTATTTTTTGCTTAA

Protein sequence

MEVALASSGYELLSTISFVCMGDIATKEVFDWLFDCPKILKASTTISRLMDDVVSYKESWSTRLQIIYLFIYLLLLFFA

Homology

[Close]

BLAST of Pay0012185 vs. ExPASy Swiss-Prot
Match: Q6Q3H2 (Valencene synthase OS=Vitis vinifera OX=29760 GN=ValCS PE=1 SV=1)

HSP 1 Score: 73.9 bits (180), Expect = 8.9e-13
Identity = 37/57 (64.91%), Postives = 45/57 (78.95%), Query Frame = 0


Query: 1   MEVALASSGYELLSTISFVCMGDIATKEVFDWLFDCPKILKASTTISRLMDDVVSYK 58
           M VALASSGY LL+T SFV MG+IATKE FDW+   PKI+ +S  I+RLMDD+ S+K
Sbjct: 404 MRVALASSGYCLLATTSFVGMGEIATKEAFDWVTSDPKIMSSSNFITRLMDDIKSHK 460

[Close]

BLAST of Pay0012185 vs. ExPASy Swiss-Prot
Match: F6M8H7 (Probable sesquiterpene synthase OS=Santalum murrayanum OX=453085 GN=STPS PE=3 SV=1)

HSP 1 Score: 70.9 bits (172), Expect = 7.5e-12
Identity = 32/57 (56.14%), Postives = 45/57 (78.95%), Query Frame = 0


Query: 1   MEVALASSGYELLSTISFVCMGDIATKEVFDWLFDCPKILKASTTISRLMDDVVSYK 58
           M VAL +SGY  L+TIS++ MG+IA+KE FDWLF  P +++AS ++ RLMDD+ S+K
Sbjct: 409 MSVALVTSGYTFLTTISYLGMGEIASKEAFDWLFSHPPVIEASESVGRLMDDMRSHK 465

[Close]

BLAST of Pay0012185 vs. ExPASy Swiss-Prot
Match: F6M8H5 (Probable sesquiterpene synthase OS=Santalum austrocaledonicum OX=293154 GN=SesquiTPS PE=3 SV=1)

HSP 1 Score: 70.5 bits (171), Expect = 9.8e-12
Identity = 32/57 (56.14%), Postives = 44/57 (77.19%), Query Frame = 0


Query: 1   MEVALASSGYELLSTISFVCMGDIATKEVFDWLFDCPKILKASTTISRLMDDVVSYK 58
           M VAL +SGY  L+TIS++ MG+IA+KE FDWLF  P +++AS ++ RLMDD  S+K
Sbjct: 409 MSVALVTSGYTFLTTISYLGMGEIASKEAFDWLFSHPPVIEASESVGRLMDDTRSHK 465

[Close]

BLAST of Pay0012185 vs. ExPASy Swiss-Prot
Match: B5A435 (Sesquiterpene synthase OS=Santalum album OX=35974 PE=1 SV=1)

HSP 1 Score: 70.1 bits (170), Expect = 1.3e-11
Identity = 32/57 (56.14%), Postives = 45/57 (78.95%), Query Frame = 0


Query: 1   MEVALASSGYELLSTISFVCMGDIATKEVFDWLFDCPKILKASTTISRLMDDVVSYK 58
           M VAL +SGY  L+TIS++ MG+IA+KE FDWLF  P +++AS ++ RLMDD+ S+K
Sbjct: 406 MPVALVTSGYTFLTTISYLGMGEIASKEAFDWLFSHPPVIEASESVCRLMDDMRSHK 462

[Close]

BLAST of Pay0012185 vs. ExPASy Swiss-Prot
Match: Q6Q3H3 ((-)-germacrene D synthase OS=Vitis vinifera OX=29760 GN=VIT_19s0014g04930 PE=1 SV=1)

HSP 1 Score: 70.1 bits (170), Expect = 1.3e-11
Identity = 33/57 (57.89%), Postives = 42/57 (73.68%), Query Frame = 0


Query: 1   MEVALASSGYELLSTISFVCMGDIATKEVFDWLFDCPKILKASTTISRLMDDVVSYK 58
           M VAL +S Y +L+T SFV MGD  TKE FDW+F  PKI++AS  + RLMDD+V +K
Sbjct: 404 MPVALVTSAYSMLATTSFVGMGDAVTKESFDWIFSKPKIVRASAIVCRLMDDMVFHK 460

[Close]

BLAST of Pay0012185 vs. ExPASy TrEMBL
Match: A0A1S3BTM3 (valencene synthase-like OS=Cucumis melo OX=3656 GN=LOC103493387 PE=4 SV=1)

HSP 1 Score: 117.9 bits (294), Expect = 2.0e-23
Identity = 62/74 (83.78%), Postives = 67/74 (90.54%), Query Frame = 0


Query: 1  MEVALASSGYELLSTISFVCMGDIATKEVFDWLFDCPKILKASTTISRLMDDVVSYK--- 60
          MEVALASSGYELLSTISFVCMGDIATKEVFDWLFDCPKILKASTTISRLMDDVVSYK   
Sbjct: 1  MEVALASSGYELLSTISFVCMGDIATKEVFDWLFDCPKILKASTTISRLMDDVVSYKVVE 60

Query: 61 ESWSTRLQIIYLFI 72
          ESW T + I ++++
Sbjct: 61 ESW-TMVSIKFIYV 73

[Close]

BLAST of Pay0012185 vs. ExPASy TrEMBL
Match: A0A0B4VEV4 (Sesquiterpene synthase Tps1 OS=Cucumis melo OX=3656 PE=2 SV=1)

HSP 1 Score: 115.2 bits (287), Expect = 1.3e-22
Identity = 56/57 (98.25%), Postives = 57/57 (100.00%), Query Frame = 0


Query: 1   MEVALASSGYELLSTISFVCMGDIATKEVFDWLFDCPKILKASTTISRLMDDVVSYK 58
           MEVALASSGYELLSTISFVCMGDIATKE+FDWLFDCPKILKASTTISRLMDDVVSYK
Sbjct: 417 MEVALASSGYELLSTISFVCMGDIATKEIFDWLFDCPKILKASTTISRLMDDVVSYK 473

[Close]

BLAST of Pay0012185 vs. ExPASy TrEMBL
Match: A0A0A0L579 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G097040 PE=4 SV=1)

HSP 1 Score: 114.0 bits (284), Expect = 2.9e-22
Identity = 56/57 (98.25%), Postives = 57/57 (100.00%), Query Frame = 0


Query: 1   MEVALASSGYELLSTISFVCMGDIATKEVFDWLFDCPKILKASTTISRLMDDVVSYK 58
           MEVALASSGYELLSTISFVCMGDIATKEVF+WLFDCPKILKASTTISRLMDDVVSYK
Sbjct: 414 MEVALASSGYELLSTISFVCMGDIATKEVFEWLFDCPKILKASTTISRLMDDVVSYK 470

[Close]

BLAST of Pay0012185 vs. ExPASy TrEMBL
Match: A0A1S4DZR2 ((+)-gamma-cadinene synthase-like OS=Cucumis melo OX=3656 GN=LOC103493390 PE=4 SV=1)

HSP 1 Score: 113.6 bits (283), Expect = 3.7e-22
Identity = 55/57 (96.49%), Postives = 57/57 (100.00%), Query Frame = 0


Query: 1   MEVALASSGYELLSTISFVCMGDIATKEVFDWLFDCPKILKASTTISRLMDDVVSYK 58
           MEVALASSGYELLSTISFVCMGDIAT+E+FDWLFDCPKILKASTTISRLMDDVVSYK
Sbjct: 417 MEVALASSGYELLSTISFVCMGDIATEEIFDWLFDCPKILKASTTISRLMDDVVSYK 473

[Close]

BLAST of Pay0012185 vs. ExPASy TrEMBL
Match: Q66PX8 (Beta-caryophyllene synthase OS=Cucumis sativus OX=3659 PE=2 SV=1)

HSP 1 Score: 112.5 bits (280), Expect = 8.3e-22
Identity = 55/57 (96.49%), Postives = 57/57 (100.00%), Query Frame = 0


Query: 1   MEVALASSGYELLSTISFVCMGDIATKEVFDWLFDCPKILKASTTISRLMDDVVSYK 58
           MEVALASSGYELLSTISFVCMGDIATKEVF+WLFDCP+ILKASTTISRLMDDVVSYK
Sbjct: 414 MEVALASSGYELLSTISFVCMGDIATKEVFEWLFDCPQILKASTTISRLMDDVVSYK 470

[Close]

BLAST of Pay0012185 vs. NCBI nr
Match: XP_008452328.1 (PREDICTED: valencene synthase-like [Cucumis melo])

HSP 1 Score: 117.9 bits (294), Expect = 4.1e-23
Identity = 62/74 (83.78%), Postives = 67/74 (90.54%), Query Frame = 0


Query: 1  MEVALASSGYELLSTISFVCMGDIATKEVFDWLFDCPKILKASTTISRLMDDVVSYK--- 60
          MEVALASSGYELLSTISFVCMGDIATKEVFDWLFDCPKILKASTTISRLMDDVVSYK   
Sbjct: 1  MEVALASSGYELLSTISFVCMGDIATKEVFDWLFDCPKILKASTTISRLMDDVVSYKVVE 60

Query: 61 ESWSTRLQIIYLFI 72
          ESW T + I ++++
Sbjct: 61 ESW-TMVSIKFIYV 73

[Close]

BLAST of Pay0012185 vs. NCBI nr
Match: NP_001315388.1 ((+)-gamma-cadinene synthase-like [Cucumis melo] >AJD19682.1 sesquiterpene synthase Tps1 [Cucumis melo])

HSP 1 Score: 115.2 bits (287), Expect = 2.6e-22
Identity = 56/57 (98.25%), Postives = 57/57 (100.00%), Query Frame = 0


Query: 1   MEVALASSGYELLSTISFVCMGDIATKEVFDWLFDCPKILKASTTISRLMDDVVSYK 58
           MEVALASSGYELLSTISFVCMGDIATKE+FDWLFDCPKILKASTTISRLMDDVVSYK
Sbjct: 417 MEVALASSGYELLSTISFVCMGDIATKEIFDWLFDCPKILKASTTISRLMDDVVSYK 473

[Close]

BLAST of Pay0012185 vs. NCBI nr
Match: KAE8650158.1 (hypothetical protein Csa_009547 [Cucumis sativus])

HSP 1 Score: 114.0 bits (284), Expect = 5.9e-22
Identity = 56/57 (98.25%), Postives = 57/57 (100.00%), Query Frame = 0


Query: 1   MEVALASSGYELLSTISFVCMGDIATKEVFDWLFDCPKILKASTTISRLMDDVVSYK 58
           MEVALASSGYELLSTISFVCMGDIATKEVF+WLFDCPKILKASTTISRLMDDVVSYK
Sbjct: 414 MEVALASSGYELLSTISFVCMGDIATKEVFEWLFDCPKILKASTTISRLMDDVVSYK 470

[Close]

BLAST of Pay0012185 vs. NCBI nr
Match: NP_001292628.1 ((+)-gamma-cadinene synthase [Cucumis sativus] >AAU05952.1 beta-caryophyllene synthase [Cucumis sativus])

HSP 1 Score: 112.5 bits (280), Expect = 1.7e-21
Identity = 55/57 (96.49%), Postives = 57/57 (100.00%), Query Frame = 0


Query: 1   MEVALASSGYELLSTISFVCMGDIATKEVFDWLFDCPKILKASTTISRLMDDVVSYK 58
           MEVALASSGYELLSTISFVCMGDIATKEVF+WLFDCP+ILKASTTISRLMDDVVSYK
Sbjct: 414 MEVALASSGYELLSTISFVCMGDIATKEVFEWLFDCPQILKASTTISRLMDDVVSYK 470

[Close]

BLAST of Pay0012185 vs. NCBI nr
Match: XP_038905757.1 ((+)-gamma-cadinene synthase-like [Benincasa hispida])

HSP 1 Score: 95.9 bits (237), Expect = 1.7e-16
Identity = 47/57 (82.46%), Postives = 51/57 (89.47%), Query Frame = 0


Query: 1   MEVALASSGYELLSTISFVCMGDIATKEVFDWLFDCPKILKASTTISRLMDDVVSYK 58
           MEVAL SSGY LL+TISF CMGDIATKEVFDWL +CPKIL+AST ISRL +DVVSYK
Sbjct: 411 MEVALVSSGYGLLTTISFACMGDIATKEVFDWLSECPKILEASTIISRLTNDVVSYK 467

[Close]

BLAST of Pay0012185 vs. TAIR 10
Match: AT5G23960.1 (terpene synthase 21 )

HSP 1 Score: 52.4 bits (124), Expect = 2.0e-07
Identity = 27/56 (48.21%), Postives = 35/56 (62.50%), Query Frame = 0


Query: 2   EVALASSGYELLSTISFVCMGDIATKEVFDWLFDCPKILKASTTISRLMDDVVSYK 58
           E A+ SSGY  L  ++FV M D+A  + F+WL   PKI  AS  ISR  DD+ SY+
Sbjct: 396 ENAILSSGYYALIAMTFVRMTDVAKLDAFEWLSSHPKIRVASEIISRFTDDISSYE 451

[Close]

BLAST of Pay0012185 vs. TAIR 10
Match: AT5G23960.2 (terpene synthase 21 )

HSP 1 Score: 52.4 bits (124), Expect = 2.0e-07
Identity = 27/56 (48.21%), Postives = 35/56 (62.50%), Query Frame = 0


Query: 2   EVALASSGYELLSTISFVCMGDIATKEVFDWLFDCPKILKASTTISRLMDDVVSYK 58
           E A+ SSGY  L  ++FV M D+A  + F+WL   PKI  AS  ISR  DD+ SY+
Sbjct: 394 ENAILSSGYYALIAMTFVRMTDVAKLDAFEWLSSHPKIRVASEIISRFTDDISSYE 449

[Close]

BLAST of Pay0012185 vs. TAIR 10
Match: AT1G70080.1 (Terpenoid cyclases/Protein prenyltransferases superfamily protein )

HSP 1 Score: 50.4 bits (119), Expect = 7.5e-07
Identity = 25/58 (43.10%), Postives = 37/58 (63.79%), Query Frame = 0


Query: 1   MEVALASSGYELLSTISFVCMGDIATKEVFDWLFDCPKILKASTTISRLMDDVVSYKE 59
           +EV +AS+  E+L  ++F+ MGD A   V++WL   PK+  A    SRL DD+ +YKE
Sbjct: 457 IEVGVASTAGEVLLAMTFIPMGDAAGVGVYEWLRSRPKLTHALFVKSRLRDDIATYKE 514

[Close]

BLAST of Pay0012185 vs. TAIR 10
Match: AT5G48110.1 (Terpenoid cyclases/Protein prenyltransferases superfamily protein )

HSP 1 Score: 47.8 bits (112), Expect = 4.8e-06
Identity = 23/58 (39.66%), Postives = 35/58 (60.34%), Query Frame = 0


Query: 1   MEVALASSGYELLSTISFVCMGDIATKEVFDWLFDCPKILKASTTISRLMDDVVSYKE 59
           MEV + + G ++    +F+ MG+ A KE FDW+   PK ++     SRL DDV +YK+
Sbjct: 425 MEVGIVTGGVDVTVAFAFIGMGE-AGKEAFDWIRSRPKFIQTIDLKSRLRDDVATYKD 481

[Close]

BLAST of Pay0012185 vs. TAIR 10
Match: AT3G32030.1 (Terpenoid cyclases/Protein prenyltransferases superfamily protein )

HSP 1 Score: 43.9 bits (102), Expect = 7.0e-05
Identity = 20/61 (32.79%), Postives = 35/61 (57.38%), Query Frame = 0


Query: 1   MEVALASSGYELLSTISFVCMGDIATKEVFDWLFDCPKILKASTTISRLMDDVVSYKESW 60
           MEV   + G +  +  SF+ M D   K +++W    PKIL+A + + R+ +D+V+Y+   
Sbjct: 450 MEVGEVTGGMDDFALYSFIAMEDCDEKPLYEWFDSKPKILQALSVLYRINNDIVTYEREM 509

Query: 61  S 62
           S
Sbjct: 510 S 510

The following BLAST results are available for this feature:

BLAST of Pay0012185 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q6Q3H2	8.9e-13	64.91	Valencene synthase OS=Vitis vinifera OX=29760 GN=ValCS PE=1 SV=1	[more]
F6M8H7	7.5e-12	56.14	Probable sesquiterpene synthase OS=Santalum murrayanum OX=453085 GN=STPS PE=3 SV...	[more]
F6M8H5	9.8e-12	56.14	Probable sesquiterpene synthase OS=Santalum austrocaledonicum OX=293154 GN=Sesqu...	[more]
B5A435	1.3e-11	56.14	Sesquiterpene synthase OS=Santalum album OX=35974 PE=1 SV=1	[more]
Q6Q3H3	1.3e-11	57.89	(-)-germacrene D synthase OS=Vitis vinifera OX=29760 GN=VIT_19s0014g04930 PE=1 S...	[more]

BLAST of Pay0012185 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S3BTM3	2.0e-23	83.78	valencene synthase-like OS=Cucumis melo OX=3656 GN=LOC103493387 PE=4 SV=1	[more]
A0A0B4VEV4	1.3e-22	98.25	Sesquiterpene synthase Tps1 OS=Cucumis melo OX=3656 PE=2 SV=1	[more]
A0A0A0L579	2.9e-22	98.25	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G097040 PE=4 SV=1	[more]
A0A1S4DZR2	3.7e-22	96.49	(+)-gamma-cadinene synthase-like OS=Cucumis melo OX=3656 GN=LOC103493390 PE=4 SV...	[more]
Q66PX8	8.3e-22	96.49	Beta-caryophyllene synthase OS=Cucumis sativus OX=3659 PE=2 SV=1	[more]

BLAST of Pay0012185 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008452328.1	4.1e-23	83.78	PREDICTED: valencene synthase-like [Cucumis melo]	[more]
NP_001315388.1	2.6e-22	98.25	(+)-gamma-cadinene synthase-like [Cucumis melo] >AJD19682.1 sesquiterpene syntha...	[more]
KAE8650158.1	5.9e-22	98.25	hypothetical protein Csa_009547 [Cucumis sativus]	[more]
NP_001292628.1	1.7e-21	96.49	(+)-gamma-cadinene synthase [Cucumis sativus] >AAU05952.1 beta-caryophyllene syn...	[more]
XP_038905757.1	1.7e-16	82.46	(+)-gamma-cadinene synthase-like [Benincasa hispida]	[more]

BLAST of Pay0012185 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G23960.1	2.0e-07	48.21	terpene synthase 21	[more]
AT5G23960.2	2.0e-07	48.21	terpene synthase 21	[more]
AT1G70080.1	7.5e-07	43.10	Terpenoid cyclases/Protein prenyltransferases superfamily protein	[more]
AT5G48110.1	4.8e-06	39.66	Terpenoid cyclases/Protein prenyltransferases superfamily protein	[more]
AT3G32030.1	7.0e-05	32.79	Terpenoid cyclases/Protein prenyltransferases superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (Payzawat) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR005630	Terpene synthase, metal-binding domain	PFAM	PF03936	Terpene_synth_C	coord: 1..58 e-value: 3.6E-15 score: 56.0
IPR008949	Isoprenoid synthase domain superfamily	GENE3D	1.10.600.10	Farnesyl Diphosphate Synthase	coord: 1..68 e-value: 4.8E-16 score: 60.4
IPR008949	Isoprenoid synthase domain superfamily	SUPERFAMILY	48576	Terpenoid synthases	coord: 1..58
None	No IPR available	PANTHER	PTHR31225:SF134	(-)-GERMACRENE D SYNTHASE-LIKE	coord: 1..58
None	No IPR available	PANTHER	PTHR31225	OS04G0344100 PROTEIN-RELATED	coord: 1..58

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Pay0012185.1	Pay0012185.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0016102	diterpenoid biosynthetic process
biological_process	GO:0120251	hydrocarbon biosynthetic process
molecular_function	GO:0000287	magnesium ion binding
molecular_function	GO:0010333	terpene synthase activity
molecular_function	GO:0016829	lyase activity