Pay0012141 (gene) Melon (Payzawat) v1

Overview


Name	Pay0012141
Type	gene
Organism	Cucumis melo L. var. inodorus cv. Payzawat (Melon (Payzawat) v1)
Description	photosynthetic NDH subunit of subcomplex B 4, chloroplastic
Location	chr02: 22813958 .. 22815320 (+)
RNA-Seq Expression	Pay0012141
Synteny	Pay0012141

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GTGGATGGAAATGGTTCCCTTATCCTTTCTTTCTTCTTCATGCTCAATAAGATTCCAAAACCAACCCCAGGTAATAGTTATCTGTTTCTATCTTTTCTTCTACAACAATGGCTAAGGCTATTGCAGGCTTCAGCATTATCAAACCAACTCTGCATAGCTCAAATCTCCACCCCAAATCAGCTCTCATCCCACATTCAAAACTGGTAAAGAATTGTCTTTTTTCTTTTTGCCTCAAAATTCCATTCATTTTTAACGTCCTCAATTTGACCATTAGATTATTATTGTTGCAGCTTTCAAACTCTGGAGGTTTCAGTCATCAAGAACTGGTAAGTTCCTCTGATTTCCACTAGAATGAAAATAAAATTGATTGATAAATTCAATATAAAGAAGTTCGGGTGCTTTTGTTCAATAAATAGCCTAAAGTTGCAAAGCCAAAAAGGGGATCTCTAAGCAAAGTGAATGCCTTCCCCGATTGGCAATTGATGGCAGTTCTAGTTGATCATTTGGATGGCCAAAGAGACCTTGTTACCCACAAATCCATAGTGCATCTTAGTGATGAAGCTATAAAGAATGTCTGTAAGTGTTTGATTATACTTAAATTTCTCTACATCAGTTAAATAGGCAGAAAATTAGGCTATTGGAATGGAAAAGTTCATCATTTTAATACTTTAAACCATTTTTTAATGTCAGACAGTCTTTACATCATGTTCACATGTTGGGGTTGTTTGTTCTTTGGCTCCATGAAGGTACAATTTCTCCAAATTCAATCTATTTGGGTTGAGTCAAATTGTTGAGTACTGAACAAGATTATGGTTTTAGGATCCATATTATGACTCAGAGGTGTACAGGAAAGATGGAGGAGATGGAACAGGACATTGGGTCTATGAAAAGGTGGATTTTTACAGAACTTAATATCATTAACAATGGCACCAATTTTTAAGGTCTCGTGTCTGTAAATGTCTGATATTGCAGCAAGAAGACATTGAAGAAGCAGCAAGAGCAGACCTATGGAGGGAGGAGCTGATAGAGGAGATTGAACAAAAGGTTGGAGGACTTAGAGAGTTGGAAGAAGCTGGAAAGAAATAAGAGGTTTTTGGGAATCATCCATTTACGTTCTTAATTTATTACAACATAAATCATTCTGTGTATATAATATTGAAACACTTGGGATTCTGTAGCTGATGGGAATGTGACAGTTTTAGTAAAACAGCAGAAACAATCCAGAAAAACACAAGAAAATATCAGTTCTTGTGAAGAATTTGCCTCAGAGGTAGTGAAAATCTTGTATTATCATCATTTTTTTGGTTAAAATTCTCAAGTTTTTGGTTCATAAAAAAGAATGGAAAGTTGGGTTAAGTGAGCA

mRNA sequence

GTGGATGGAAATGGTTCCCTTATCCTTTCTTTCTTCTTCATGCTCAATAAGATTCCAAAACCAACCCCAGGTAATAGTTATCTGTTTCTATCTTTTCTTCTACAACAATGGCTAAGGCTATTGCAGGCTTCAGCATTATCAAACCAACTCTGCATAGCTCAAATCTCCACCCCAAATCAGCTCTCATCCCACATTCAAAACTGCTTTCAAACTCTGGAGGTTTCAGTCATCAAGAACTGCCTAAAGTTGCAAAGCCAAAAAGGGGATCTCTAAGCAAAGTGAATGCCTTCCCCGATTGGCAATTGATGGCAGTTCTAGTTGATCATTTGGATGGCCAAAGAGACCTTGTTACCCACAAATCCATAGTGCATCTTAGTGATGAAGCTATAAAGAATGTCTACAGTCTTTACATCATGTTCACATGTTGGGGTTGTTTGTTCTTTGGCTCCATGAAGGATCCATATTATGACTCAGAGGTGTACAGGAAAGATGGAGGAGATGGAACAGGACATTGGGTCTATGAAAAGCAAGAAGACATTGAAGAAGCAGCAAGAGCAGACCTATGGAGGGAGGAGCTGATAGAGGAGATTGAACAAAAGGTTGGAGGACTTAGAGAGTTGGAAGAAGCTGGAAAGAAATAAGAGGTTTTTGGGAATCATCCATTTACGTTCTTAATTTATTACAACATAAATCATTCTGTGTATATAATATTGAAACACTTGGGATTCTGTAGCTGATGGGAATGTGACAGTTTTAGTAAAACAGCAGAAACAATCCAGAAAAACACAAGAAAATATCAGTTCTTGTGAAGAATTTGCCTCAGAGGTAGTGAAAATCTTGTATTATCATCATTTTTTTGGTTAAAATTCTCAAGTTTTTGGTTCATAAAAAAGAATGGAAAGTTGGGTTAAGTGAGCA

Coding sequence (CDS)

ATGGCTAAGGCTATTGCAGGCTTCAGCATTATCAAACCAACTCTGCATAGCTCAAATCTCCACCCCAAATCAGCTCTCATCCCACATTCAAAACTGCTTTCAAACTCTGGAGGTTTCAGTCATCAAGAACTGCCTAAAGTTGCAAAGCCAAAAAGGGGATCTCTAAGCAAAGTGAATGCCTTCCCCGATTGGCAATTGATGGCAGTTCTAGTTGATCATTTGGATGGCCAAAGAGACCTTGTTACCCACAAATCCATAGTGCATCTTAGTGATGAAGCTATAAAGAATGTCTACAGTCTTTACATCATGTTCACATGTTGGGGTTGTTTGTTCTTTGGCTCCATGAAGGATCCATATTATGACTCAGAGGTGTACAGGAAAGATGGAGGAGATGGAACAGGACATTGGGTCTATGAAAAGCAAGAAGACATTGAAGAAGCAGCAAGAGCAGACCTATGGAGGGAGGAGCTGATAGAGGAGATTGAACAAAAGGTTGGAGGACTTAGAGAGTTGGAAGAAGCTGGAAAGAAATAA

Protein sequence

MAKAIAGFSIIKPTLHSSNLHPKSALIPHSKLLSNSGGFSHQELPKVAKPKRGSLSKVNAFPDWQLMAVLVDHLDGQRDLVTHKSIVHLSDEAIKNVYSLYIMFTCWGCLFFGSMKDPYYDSEVYRKDGGDGTGHWVYEKQEDIEEAARADLWREELIEEIEQKVGGLRELEEAGKK

Homology

[Close]

BLAST of Pay0012141 vs. ExPASy Swiss-Prot
Match: Q8RXS1 (Photosynthetic NDH subunit of subcomplex B 4, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=PNSB4 PE=2 SV=1)

HSP 1 Score: 189.9 bits (481), Expect = 2.5e-47
Identity = 108/184 (58.70%), Postives = 123/184 (66.85%), Query Frame = 0


Query: 1   MAKAIAGFSIIKPTLHSSNLHPKSALIPHSKLLSNSGGFSHQELPKVAKPK------RGS 60
           MA+A   F+        +NLH  S+     K   NSG      L K    K      RGS
Sbjct: 1   MAEAFTSFTF-------TNLHIPSSYNHSPK--QNSGPNHGYWLSKNVNEKRERNLMRGS 60

Query: 61  LSKVNAFP-DWQLMAVLVDHLDGQRDLVTHKSIVHLSDEAIKNVYSLYIMFTCWGCLFFG 120
           L    A P D  LMAV+V  ++G RD++T K + HLSD+AIKNVY  YIMFTCWGCL+FG
Sbjct: 61  LCVRKALPHDLPLMAVMVQQIEGMRDIITEKHVWHLSDKAIKNVYMFYIMFTCWGCLYFG 120

Query: 121 SMKDPYYDSEVYRKDGGDGTGHWVYEKQEDIEEAARADLWREELIEEIEQKVGGLRELEE 178
           S KDP+YDSE YR DGGDGTG+WVYE QEDIEE ARA+LWREELIEEIEQKVGGLRELEE
Sbjct: 121 SAKDPFYDSEEYRGDGGDGTGYWVYETQEDIEEKARAELWREELIEEIEQKVGGLRELEE 175

[Close]

BLAST of Pay0012141 vs. ExPASy TrEMBL
Match: A0A5A7UWT7 (Photosynthetic NDH subunit of subcomplex B 4 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold274G002540 PE=4 SV=1)

HSP 1 Score: 361.3 bits (926), Expect = 2.3e-96
Identity = 177/177 (100.00%), Postives = 177/177 (100.00%), Query Frame = 0


Query: 1   MAKAIAGFSIIKPTLHSSNLHPKSALIPHSKLLSNSGGFSHQELPKVAKPKRGSLSKVNA 60
           MAKAIAGFSIIKPTLHSSNLHPKSALIPHSKLLSNSGGFSHQELPKVAKPKRGSLSKVNA
Sbjct: 1   MAKAIAGFSIIKPTLHSSNLHPKSALIPHSKLLSNSGGFSHQELPKVAKPKRGSLSKVNA 60

Query: 61  FPDWQLMAVLVDHLDGQRDLVTHKSIVHLSDEAIKNVYSLYIMFTCWGCLFFGSMKDPYY 120
           FPDWQLMAVLVDHLDGQRDLVTHKSIVHLSDEAIKNVYSLYIMFTCWGCLFFGSMKDPYY
Sbjct: 61  FPDWQLMAVLVDHLDGQRDLVTHKSIVHLSDEAIKNVYSLYIMFTCWGCLFFGSMKDPYY 120

Query: 121 DSEVYRKDGGDGTGHWVYEKQEDIEEAARADLWREELIEEIEQKVGGLRELEEAGKK 178
           DSEVYRKDGGDGTGHWVYEKQEDIEEAARADLWREELIEEIEQKVGGLRELEEAGKK
Sbjct: 121 DSEVYRKDGGDGTGHWVYEKQEDIEEAARADLWREELIEEIEQKVGGLRELEEAGKK 177

[Close]

BLAST of Pay0012141 vs. ExPASy TrEMBL
Match: A0A1S3BVN6 (photosynthetic NDH subunit of subcomplex B 4, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103494001 PE=4 SV=1)

HSP 1 Score: 361.3 bits (926), Expect = 2.3e-96
Identity = 177/177 (100.00%), Postives = 177/177 (100.00%), Query Frame = 0


Query: 1   MAKAIAGFSIIKPTLHSSNLHPKSALIPHSKLLSNSGGFSHQELPKVAKPKRGSLSKVNA 60
           MAKAIAGFSIIKPTLHSSNLHPKSALIPHSKLLSNSGGFSHQELPKVAKPKRGSLSKVNA
Sbjct: 1   MAKAIAGFSIIKPTLHSSNLHPKSALIPHSKLLSNSGGFSHQELPKVAKPKRGSLSKVNA 60

Query: 61  FPDWQLMAVLVDHLDGQRDLVTHKSIVHLSDEAIKNVYSLYIMFTCWGCLFFGSMKDPYY 120
           FPDWQLMAVLVDHLDGQRDLVTHKSIVHLSDEAIKNVYSLYIMFTCWGCLFFGSMKDPYY
Sbjct: 61  FPDWQLMAVLVDHLDGQRDLVTHKSIVHLSDEAIKNVYSLYIMFTCWGCLFFGSMKDPYY 120

Query: 121 DSEVYRKDGGDGTGHWVYEKQEDIEEAARADLWREELIEEIEQKVGGLRELEEAGKK 178
           DSEVYRKDGGDGTGHWVYEKQEDIEEAARADLWREELIEEIEQKVGGLRELEEAGKK
Sbjct: 121 DSEVYRKDGGDGTGHWVYEKQEDIEEAARADLWREELIEEIEQKVGGLRELEEAGKK 177

[Close]

BLAST of Pay0012141 vs. ExPASy TrEMBL
Match: A0A0A0LRP8 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G009830 PE=4 SV=1)

HSP 1 Score: 357.5 bits (916), Expect = 3.3e-95
Identity = 175/177 (98.87%), Postives = 175/177 (98.87%), Query Frame = 0


Query: 1   MAKAIAGFSIIKPTLHSSNLHPKSALIPHSKLLSNSGGFSHQELPKVAKPKRGSLSKVNA 60
           MAKAIAGFSIIKPTLHSSNLHPKSALIPHSKLLSNSGGFSHQELPKV KPKRGSLSKVNA
Sbjct: 1   MAKAIAGFSIIKPTLHSSNLHPKSALIPHSKLLSNSGGFSHQELPKVVKPKRGSLSKVNA 60

Query: 61  FPDWQLMAVLVDHLDGQRDLVTHKSIVHLSDEAIKNVYSLYIMFTCWGCLFFGSMKDPYY 120
           FPDWQLMAVLVDHLDGQRDLVTHKSIVHLSD AIKNVYSLYIMFTCWGCLFFGSMKDPYY
Sbjct: 61  FPDWQLMAVLVDHLDGQRDLVTHKSIVHLSDAAIKNVYSLYIMFTCWGCLFFGSMKDPYY 120

Query: 121 DSEVYRKDGGDGTGHWVYEKQEDIEEAARADLWREELIEEIEQKVGGLRELEEAGKK 178
           DSEVYRKDGGDGTGHWVYEKQEDIEEAARADLWREELIEEIEQKVGGLRELEEAGKK
Sbjct: 121 DSEVYRKDGGDGTGHWVYEKQEDIEEAARADLWREELIEEIEQKVGGLRELEEAGKK 177

[Close]

BLAST of Pay0012141 vs. ExPASy TrEMBL
Match: A0A6J1JG67 (photosynthetic NDH subunit of subcomplex B 4, chloroplastic-like OS=Cucurbita maxima OX=3661 GN=LOC111484826 PE=4 SV=1)

HSP 1 Score: 316.6 bits (810), Expect = 6.5e-83
Identity = 157/178 (88.20%), Postives = 165/178 (92.70%), Query Frame = 0


Query: 1   MAKAIAGFSIIKPTLHSSNLHP-KSALIPHSKLLSNSGGFSHQELPKVAKPKRGSLSKVN 60
           MAKAIAGFS+I PTLHSSNLHP K+ LIP  KL SNSG F HQ+L +  K +RGS+ KV+
Sbjct: 1   MAKAIAGFSMINPTLHSSNLHPHKATLIPQPKLPSNSGIFGHQQLIEDTKRQRGSMGKVS 60

Query: 61  AFPDWQLMAVLVDHLDGQRDLVTHKSIVHLSDEAIKNVYSLYIMFTCWGCLFFGSMKDPY 120
           AFPDWQLMAVLVDHLDGQRDLVTHKSIVHLSDEAIKNVYSLYIMFTCWGCLFFGSMKDPY
Sbjct: 61  AFPDWQLMAVLVDHLDGQRDLVTHKSIVHLSDEAIKNVYSLYIMFTCWGCLFFGSMKDPY 120

Query: 121 YDSEVYRKDGGDGTGHWVYEKQEDIEEAARADLWREELIEEIEQKVGGLRELEEAGKK 178
           YDSEVYRKDGGDGTGHWVYEKQEDIEEAARADLWREELIEEIEQKVGGLRELEEAG+K
Sbjct: 121 YDSEVYRKDGGDGTGHWVYEKQEDIEEAARADLWREELIEEIEQKVGGLRELEEAGRK 178

[Close]

BLAST of Pay0012141 vs. ExPASy TrEMBL
Match: A0A6J1E2I6 (photosynthetic NDH subunit of subcomplex B 4, chloroplastic-like OS=Cucurbita moschata OX=3662 GN=LOC111429992 PE=4 SV=1)

HSP 1 Score: 315.5 bits (807), Expect = 1.4e-82
Identity = 156/178 (87.64%), Postives = 164/178 (92.13%), Query Frame = 0


Query: 1   MAKAIAGFSIIKPTLHSSNLHP-KSALIPHSKLLSNSGGFSHQELPKVAKPKRGSLSKVN 60
           MAKAIAGFS++ PTLHSSNLHP KS LIP  KL SNSG F HQ+L +  K +RGS+ KV+
Sbjct: 1   MAKAIAGFSMVNPTLHSSNLHPHKSTLIPQPKLPSNSGIFGHQQLIEDTKRQRGSMGKVS 60

Query: 61  AFPDWQLMAVLVDHLDGQRDLVTHKSIVHLSDEAIKNVYSLYIMFTCWGCLFFGSMKDPY 120
           AFPDWQLMAVLVDHLDGQRDLVTHKSIVHLSDEAIKNVYSLYIMFTCWGCLFFGSMKDPY
Sbjct: 61  AFPDWQLMAVLVDHLDGQRDLVTHKSIVHLSDEAIKNVYSLYIMFTCWGCLFFGSMKDPY 120

Query: 121 YDSEVYRKDGGDGTGHWVYEKQEDIEEAARADLWREELIEEIEQKVGGLRELEEAGKK 178
           YDSEVYRKDGGDGTGHWVYEKQEDIEE ARADLWREELIEEIEQKVGGLRELEEAG+K
Sbjct: 121 YDSEVYRKDGGDGTGHWVYEKQEDIEEEARADLWREELIEEIEQKVGGLRELEEAGRK 178

[Close]

BLAST of Pay0012141 vs. NCBI nr
Match: XP_008453213.1 (PREDICTED: photosynthetic NDH subunit of subcomplex B 4, chloroplastic [Cucumis melo] >KAA0057951.1 photosynthetic NDH subunit of subcomplex B 4 [Cucumis melo var. makuwa])

HSP 1 Score: 361.3 bits (926), Expect = 4.7e-96
Identity = 177/177 (100.00%), Postives = 177/177 (100.00%), Query Frame = 0


Query: 1   MAKAIAGFSIIKPTLHSSNLHPKSALIPHSKLLSNSGGFSHQELPKVAKPKRGSLSKVNA 60
           MAKAIAGFSIIKPTLHSSNLHPKSALIPHSKLLSNSGGFSHQELPKVAKPKRGSLSKVNA
Sbjct: 1   MAKAIAGFSIIKPTLHSSNLHPKSALIPHSKLLSNSGGFSHQELPKVAKPKRGSLSKVNA 60

Query: 61  FPDWQLMAVLVDHLDGQRDLVTHKSIVHLSDEAIKNVYSLYIMFTCWGCLFFGSMKDPYY 120
           FPDWQLMAVLVDHLDGQRDLVTHKSIVHLSDEAIKNVYSLYIMFTCWGCLFFGSMKDPYY
Sbjct: 61  FPDWQLMAVLVDHLDGQRDLVTHKSIVHLSDEAIKNVYSLYIMFTCWGCLFFGSMKDPYY 120

Query: 121 DSEVYRKDGGDGTGHWVYEKQEDIEEAARADLWREELIEEIEQKVGGLRELEEAGKK 178
           DSEVYRKDGGDGTGHWVYEKQEDIEEAARADLWREELIEEIEQKVGGLRELEEAGKK
Sbjct: 121 DSEVYRKDGGDGTGHWVYEKQEDIEEAARADLWREELIEEIEQKVGGLRELEEAGKK 177

[Close]

BLAST of Pay0012141 vs. NCBI nr
Match: XP_004138173.1 (photosynthetic NDH subunit of subcomplex B 4, chloroplastic [Cucumis sativus] >KGN63679.1 hypothetical protein Csa_013717 [Cucumis sativus])

HSP 1 Score: 357.5 bits (916), Expect = 6.9e-95
Identity = 175/177 (98.87%), Postives = 175/177 (98.87%), Query Frame = 0


Query: 1   MAKAIAGFSIIKPTLHSSNLHPKSALIPHSKLLSNSGGFSHQELPKVAKPKRGSLSKVNA 60
           MAKAIAGFSIIKPTLHSSNLHPKSALIPHSKLLSNSGGFSHQELPKV KPKRGSLSKVNA
Sbjct: 1   MAKAIAGFSIIKPTLHSSNLHPKSALIPHSKLLSNSGGFSHQELPKVVKPKRGSLSKVNA 60

Query: 61  FPDWQLMAVLVDHLDGQRDLVTHKSIVHLSDEAIKNVYSLYIMFTCWGCLFFGSMKDPYY 120
           FPDWQLMAVLVDHLDGQRDLVTHKSIVHLSD AIKNVYSLYIMFTCWGCLFFGSMKDPYY
Sbjct: 61  FPDWQLMAVLVDHLDGQRDLVTHKSIVHLSDAAIKNVYSLYIMFTCWGCLFFGSMKDPYY 120

Query: 121 DSEVYRKDGGDGTGHWVYEKQEDIEEAARADLWREELIEEIEQKVGGLRELEEAGKK 178
           DSEVYRKDGGDGTGHWVYEKQEDIEEAARADLWREELIEEIEQKVGGLRELEEAGKK
Sbjct: 121 DSEVYRKDGGDGTGHWVYEKQEDIEEAARADLWREELIEEIEQKVGGLRELEEAGKK 177

[Close]

BLAST of Pay0012141 vs. NCBI nr
Match: XP_038880039.1 (photosynthetic NDH subunit of subcomplex B 4, chloroplastic [Benincasa hispida])

HSP 1 Score: 329.7 bits (844), Expect = 1.5e-86
Identity = 163/178 (91.57%), Postives = 169/178 (94.94%), Query Frame = 0


Query: 1   MAKAIAGFSIIKPTLHSSNLHP-KSALIPHSKLLSNSGGFSHQELPKVAKPKRGSLSKVN 60
           MAKAIAGFSIIKPTLHSSNLH  KS LIP SKLLSNS  F+HQE P+V KP+RGSL K+N
Sbjct: 1   MAKAIAGFSIIKPTLHSSNLHQHKSTLIPPSKLLSNSRAFNHQEPPEVTKPRRGSLGKLN 60

Query: 61  AFPDWQLMAVLVDHLDGQRDLVTHKSIVHLSDEAIKNVYSLYIMFTCWGCLFFGSMKDPY 120
           AFPDWQLMAVLVDHLDGQRDLVTHKSIVHLSDEAIKNVYSLYIMFTCWGCLFFGSMKDPY
Sbjct: 61  AFPDWQLMAVLVDHLDGQRDLVTHKSIVHLSDEAIKNVYSLYIMFTCWGCLFFGSMKDPY 120

Query: 121 YDSEVYRKDGGDGTGHWVYEKQEDIEEAARADLWREELIEEIEQKVGGLRELEEAGKK 178
           YDSEVYRKDGGDGTGHWVYEKQEDIEEAARADLWREELIEEIEQ+VGGL+ELEEAGKK
Sbjct: 121 YDSEVYRKDGGDGTGHWVYEKQEDIEEAARADLWREELIEEIEQRVGGLKELEEAGKK 178

[Close]

BLAST of Pay0012141 vs. NCBI nr
Match: XP_023516363.1 (photosynthetic NDH subunit of subcomplex B 4, chloroplastic-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 320.9 bits (821), Expect = 7.1e-84
Identity = 159/178 (89.33%), Postives = 166/178 (93.26%), Query Frame = 0


Query: 1   MAKAIAGFSIIKPTLHSSNLHP-KSALIPHSKLLSNSGGFSHQELPKVAKPKRGSLSKVN 60
           MAKAIAGFS+I PTLHSSNLHP KS LIPH KL SNSG F HQ+L +  K +RGS+ KV+
Sbjct: 1   MAKAIAGFSMINPTLHSSNLHPHKSTLIPHPKLPSNSGIFGHQQLIEDTKRQRGSMGKVS 60

Query: 61  AFPDWQLMAVLVDHLDGQRDLVTHKSIVHLSDEAIKNVYSLYIMFTCWGCLFFGSMKDPY 120
           AFPDWQLMAVLVDHLDGQRDLVTHKSIVHLSDEAIKNVYSLYIMFTCWGCLFFGSMKDPY
Sbjct: 61  AFPDWQLMAVLVDHLDGQRDLVTHKSIVHLSDEAIKNVYSLYIMFTCWGCLFFGSMKDPY 120

Query: 121 YDSEVYRKDGGDGTGHWVYEKQEDIEEAARADLWREELIEEIEQKVGGLRELEEAGKK 178
           YDSEVYRKDGGDGTGHWVYEKQEDIEEAARADLWREELIEEIEQKVGGLRELEEAG+K
Sbjct: 121 YDSEVYRKDGGDGTGHWVYEKQEDIEEAARADLWREELIEEIEQKVGGLRELEEAGRK 178

[Close]

BLAST of Pay0012141 vs. NCBI nr
Match: XP_022987205.1 (photosynthetic NDH subunit of subcomplex B 4, chloroplastic-like [Cucurbita maxima])

HSP 1 Score: 316.6 bits (810), Expect = 1.3e-82
Identity = 157/178 (88.20%), Postives = 165/178 (92.70%), Query Frame = 0


Query: 1   MAKAIAGFSIIKPTLHSSNLHP-KSALIPHSKLLSNSGGFSHQELPKVAKPKRGSLSKVN 60
           MAKAIAGFS+I PTLHSSNLHP K+ LIP  KL SNSG F HQ+L +  K +RGS+ KV+
Sbjct: 1   MAKAIAGFSMINPTLHSSNLHPHKATLIPQPKLPSNSGIFGHQQLIEDTKRQRGSMGKVS 60

Query: 61  AFPDWQLMAVLVDHLDGQRDLVTHKSIVHLSDEAIKNVYSLYIMFTCWGCLFFGSMKDPY 120
           AFPDWQLMAVLVDHLDGQRDLVTHKSIVHLSDEAIKNVYSLYIMFTCWGCLFFGSMKDPY
Sbjct: 61  AFPDWQLMAVLVDHLDGQRDLVTHKSIVHLSDEAIKNVYSLYIMFTCWGCLFFGSMKDPY 120

Query: 121 YDSEVYRKDGGDGTGHWVYEKQEDIEEAARADLWREELIEEIEQKVGGLRELEEAGKK 178
           YDSEVYRKDGGDGTGHWVYEKQEDIEEAARADLWREELIEEIEQKVGGLRELEEAG+K
Sbjct: 121 YDSEVYRKDGGDGTGHWVYEKQEDIEEAARADLWREELIEEIEQKVGGLRELEEAGRK 178

[Close]

BLAST of Pay0012141 vs. TAIR 10
Match: AT1G18730.3 (NDH dependent flow 6 )

HSP 1 Score: 192.6 bits (488), Expect = 2.7e-49
Identity = 108/180 (60.00%), Postives = 123/180 (68.33%), Query Frame = 0


Query: 1   MAKAIAGFSIIKPTLHSSNLH-PKSALIP-HSKLLSNSGGFSHQELPKVAKPKRGSLSKV 60
           MA+A   F+     + SS  H PK    P H   LSN      + L       RGSL   
Sbjct: 1   MAEAFTSFTFTNLHIPSSYNHSPKQNSGPNHGYWLSNVNEKRERNL------MRGSLCVR 60

Query: 61  NAFP-DWQLMAVLVDHLDGQRDLVTHKSIVHLSDEAIKNVYSLYIMFTCWGCLFFGSMKD 120
            A P D  LMAV+V  ++G RD++T K + HLSD+AIKNVY  YIMFTCWGCL+FGS KD
Sbjct: 61  KALPHDLPLMAVMVQQIEGMRDIITEKHVWHLSDKAIKNVYMFYIMFTCWGCLYFGSAKD 120

Query: 121 PYYDSEVYRKDGGDGTGHWVYEKQEDIEEAARADLWREELIEEIEQKVGGLRELEEAGKK 178
           P+YDSE YR DGGDGTG+WVYE QEDIEE ARA+LWREELIEEIEQKVGGLRELEEA  K
Sbjct: 121 PFYDSEEYRGDGGDGTGYWVYETQEDIEEKARAELWREELIEEIEQKVGGLRELEEAVTK 174

[Close]

BLAST of Pay0012141 vs. TAIR 10
Match: AT1G18730.1 (NDH dependent flow 6 )

HSP 1 Score: 189.9 bits (481), Expect = 1.8e-48
Identity = 108/184 (58.70%), Postives = 123/184 (66.85%), Query Frame = 0


Query: 1   MAKAIAGFSIIKPTLHSSNLHPKSALIPHSKLLSNSGGFSHQELPKVAKPK------RGS 60
           MA+A   F+        +NLH  S+     K   NSG      L K    K      RGS
Sbjct: 1   MAEAFTSFTF-------TNLHIPSSYNHSPK--QNSGPNHGYWLSKNVNEKRERNLMRGS 60

Query: 61  LSKVNAFP-DWQLMAVLVDHLDGQRDLVTHKSIVHLSDEAIKNVYSLYIMFTCWGCLFFG 120
           L    A P D  LMAV+V  ++G RD++T K + HLSD+AIKNVY  YIMFTCWGCL+FG
Sbjct: 61  LCVRKALPHDLPLMAVMVQQIEGMRDIITEKHVWHLSDKAIKNVYMFYIMFTCWGCLYFG 120

Query: 121 SMKDPYYDSEVYRKDGGDGTGHWVYEKQEDIEEAARADLWREELIEEIEQKVGGLRELEE 178
           S KDP+YDSE YR DGGDGTG+WVYE QEDIEE ARA+LWREELIEEIEQKVGGLRELEE
Sbjct: 121 SAKDPFYDSEEYRGDGGDGTGYWVYETQEDIEEKARAELWREELIEEIEQKVGGLRELEE 175

[Close]

BLAST of Pay0012141 vs. TAIR 10
Match: AT1G18730.2 (NDH dependent flow 6 )

HSP 1 Score: 135.6 bits (340), Expect = 3.9e-32
Identity = 75/142 (52.82%), Postives = 89/142 (62.68%), Query Frame = 0


Query: 1   MAKAIAGFSIIKPTLHSSNLH-PKSALIP-HSKLLSNSGGFSHQELPKVAKPKRGSLSKV 60
           MA+A   F+     + SS  H PK    P H   LSN      + L       RGSL   
Sbjct: 1   MAEAFTSFTFTNLHIPSSYNHSPKQNSGPNHGYWLSNVNEKRERNL------MRGSLCVR 60

Query: 61  NAFP-DWQLMAVLVDHLDGQRDLVTHKSIVHLSDEAIKNVYSLYIMFTCWGCLFFGSMKD 120
            A P D  LMAV+V  ++G RD++T K + HLSD+AIKNVY  YIMFTCWGCL+FGS KD
Sbjct: 61  KALPHDLPLMAVMVQQIEGMRDIITEKHVWHLSDKAIKNVYMFYIMFTCWGCLYFGSAKD 120

Query: 121 PYYDSEVYRKDGGDGTGHWVYE 140
           P+YDSE YR DGGDGTG+WVYE
Sbjct: 121 PFYDSEEYRGDGGDGTGYWVYE 136

[Close]

BLAST of Pay0012141 vs. TAIR 10
Match: AT1G18730.4 (NDH dependent flow 6 )

HSP 1 Score: 135.6 bits (340), Expect = 3.9e-32
Identity = 75/142 (52.82%), Postives = 89/142 (62.68%), Query Frame = 0


Query: 1   MAKAIAGFSIIKPTLHSSNLH-PKSALIP-HSKLLSNSGGFSHQELPKVAKPKRGSLSKV 60
           MA+A   F+     + SS  H PK    P H   LSN      + L       RGSL   
Sbjct: 1   MAEAFTSFTFTNLHIPSSYNHSPKQNSGPNHGYWLSNVNEKRERNL------MRGSLCVR 60

Query: 61  NAFP-DWQLMAVLVDHLDGQRDLVTHKSIVHLSDEAIKNVYSLYIMFTCWGCLFFGSMKD 120
            A P D  LMAV+V  ++G RD++T K + HLSD+AIKNVY  YIMFTCWGCL+FGS KD
Sbjct: 61  KALPHDLPLMAVMVQQIEGMRDIITEKHVWHLSDKAIKNVYMFYIMFTCWGCLYFGSAKD 120

Query: 121 PYYDSEVYRKDGGDGTGHWVYE 140
           P+YDSE YR DGGDGTG+WVYE
Sbjct: 121 PFYDSEEYRGDGGDGTGYWVYE 136

The following BLAST results are available for this feature:

BLAST of Pay0012141 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q8RXS1	2.5e-47	58.70	Photosynthetic NDH subunit of subcomplex B 4, chloroplastic OS=Arabidopsis thali...	[more]

BLAST of Pay0012141 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7UWT7	2.3e-96	100.00	Photosynthetic NDH subunit of subcomplex B 4 OS=Cucumis melo var. makuwa OX=1194...	[more]
A0A1S3BVN6	2.3e-96	100.00	photosynthetic NDH subunit of subcomplex B 4, chloroplastic OS=Cucumis melo OX=3...	[more]
A0A0A0LRP8	3.3e-95	98.87	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G009830 PE=4 SV=1	[more]
A0A6J1JG67	6.5e-83	88.20	photosynthetic NDH subunit of subcomplex B 4, chloroplastic-like OS=Cucurbita ma...	[more]
A0A6J1E2I6	1.4e-82	87.64	photosynthetic NDH subunit of subcomplex B 4, chloroplastic-like OS=Cucurbita mo...	[more]

BLAST of Pay0012141 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008453213.1	4.7e-96	100.00	PREDICTED: photosynthetic NDH subunit of subcomplex B 4, chloroplastic [Cucumis ...	[more]
XP_004138173.1	6.9e-95	98.87	photosynthetic NDH subunit of subcomplex B 4, chloroplastic [Cucumis sativus] >K...	[more]
XP_038880039.1	1.5e-86	91.57	photosynthetic NDH subunit of subcomplex B 4, chloroplastic [Benincasa hispida]	[more]
XP_023516363.1	7.1e-84	89.33	photosynthetic NDH subunit of subcomplex B 4, chloroplastic-like [Cucurbita pepo...	[more]
XP_022987205.1	1.3e-82	88.20	photosynthetic NDH subunit of subcomplex B 4, chloroplastic-like [Cucurbita maxi...	[more]

BLAST of Pay0012141 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G18730.3	2.7e-49	60.00	NDH dependent flow 6	[more]
AT1G18730.1	1.8e-48	58.70	NDH dependent flow 6	[more]
AT1G18730.2	3.9e-32	52.82	NDH dependent flow 6	[more]
AT1G18730.4	3.9e-32	52.82	NDH dependent flow 6	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (Payzawat) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 154..174
IPR034570	Photosynthetic NDH subunit of subcomplex B 4, chloroplastic	PANTHER	PTHR36315	PHOTOSYNTHETIC NDH SUBUNIT OF SUBCOMPLEX B 4, CHLOROPLASTIC	coord: 1..177

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Pay0012141.1	Pay0012141.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009773	photosynthetic electron transport in photosystem I
cellular_component	GO:0009535	chloroplast thylakoid membrane
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0010598	NAD(P)H dehydrogenase complex (plastoquinone)