Pay0012085 (gene) Melon (Payzawat) v1

Overview


Name	Pay0012085
Type	gene
Organism	Cucumis melo L. var. inodorus cv. Payzawat (Melon (Payzawat) v1)
Description	Ribonuclease H
Location	chr01: 7506550 .. 7507035 (-)
RNA-Seq Expression	Pay0012085
Synteny	Pay0012085

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGTATTAAAAGGTTGAAAGTTTTGGGTGACTCGATGTTAGTGATACATCAAGTCAAGGAAGAGTGGGAAACAAGAGATGCTAATTGGTGCCTTACAGCCAATACGTTACTAAATTGTCTCAAAATTTTGAGAAGATTTCATTTGACCATGTTCTTAGGGAAGACAATCGAATGGTGGATGCATTAGCCACTCTGGCAGTGATGTTTGATCTTAATCTTGAATTTGAACTTCATCCAATCCGAATTACAAAGCGAGATGTGCCAGCATACTGCGTGAATGTTGAAAATGATAACAAGCCATGGTGTTTTGACATTAAGCAATATATAAAGTGTAGAGAATATCCATATGAAGCTTTAGAGAATGACAAACGCACAATAAGAAGGTTGGTCACGAACTTTTTCTTAAGTGGTCAAGTTCTTTGTAAAAGAAACCACGATATGGTGCTCCTTCAGTGTGTTGATGAGGAAGCAAAACAAATTATGA

mRNA sequence

ATGAGTATTAAAAGGTTGAAAGTTTTGGGTGACTCGATGTTAGTGATACATCAAGTCAAGGAAGACCAATACGTTACTAAATTGTCTCAAAATTTTGAGAAGATTTCATTTGACCATGTTCTTAGGGAAGACAATCGAATGGTGGATGCATTAGCCACTCTGGCAGTGATGTTTGATCTTAATCTTGAATTTGAACTTCATCCAATCCGAATTACAAAGCGAGATGTGCCAGCATACTGCGTGAATGTTGAAAATGATAACAAGCCATGGTGTTTTGACATTAAGCAATATATAAAGTGTAGAGAATATCCATATGAAGCTTTAGAGAATGACAAACTGGTCAAGTTCTTTGTAAAAGAAACCACGATATGGTGCTCCTTCAGTGTGTTGATGAGGAAGCAAAACAAATTATGA

Coding sequence (CDS)

ATGAGTATTAAAAGGTTGAAAGTTTTGGGTGACTCGATGTTAGTGATACATCAAGTCAAGGAAGACCAATACGTTACTAAATTGTCTCAAAATTTTGAGAAGATTTCATTTGACCATGTTCTTAGGGAAGACAATCGAATGGTGGATGCATTAGCCACTCTGGCAGTGATGTTTGATCTTAATCTTGAATTTGAACTTCATCCAATCCGAATTACAAAGCGAGATGTGCCAGCATACTGCGTGAATGTTGAAAATGATAACAAGCCATGGTGTTTTGACATTAAGCAATATATAAAGTGTAGAGAATATCCATATGAAGCTTTAGAGAATGACAAACTGGTCAAGTTCTTTGTAAAAGAAACCACGATATGGTGCTCCTTCAGTGTGTTGATGAGGAAGCAAAACAAATTATGA

Protein sequence

MSIKRLKVLGDSMLVIHQVKEDQYVTKLSQNFEKISFDHVLREDNRMVDALATLAVMFDLNLEFELHPIRITKRDVPAYCVNVENDNKPWCFDIKQYIKCREYPYEALENDKLVKFFVKETTIWCSFSVLMRKQNKL

Homology

[Close]

BLAST of Pay0012085 vs. ExPASy TrEMBL
Match: A0A1S4DZX1 (uncharacterized protein LOC107991219 OS=Cucumis melo OX=3656 GN=LOC107991219 PE=4 SV=1)

HSP 1 Score: 218.4 bits (555), Expect = 1.9e-53
Identity = 115/162 (70.99%), Postives = 124/162 (76.54%), Query Frame = 0


Query: 1   MSIKRLKVLGDSMLVIHQVKED------------QYVTKLSQNFEKISFDHVLREDNRMV 60
           M IK+LKVLGDSML+IHQVKE+            QYVTKLSQNFEKISFDHV REDNR+ 
Sbjct: 17  MRIKKLKVLGDSMLMIHQVKEEWEIRDAKLVPYSQYVTKLSQNFEKISFDHVPREDNRLA 76

Query: 61  DALATLAVMFDLNLEFELHPIRITKRDVPAYCVNVENDNKPWCFDIKQYIKCREYPYEAL 120
           DALATLA+MFDLNLE ELHPI+ITKRDV +YC+NV NDNKPW FDIKQYIKCREYPYE L
Sbjct: 77  DALATLAMMFDLNLECELHPIQITKRDVSSYCMNVGNDNKPWYFDIKQYIKCREYPYETL 136

Query: 121 ENDKLV------------KFFVKETTIWCSFSVLM-RKQNKL 138
           ENDK              K   K+TTIWCSFSVLM RKQNKL
Sbjct: 137 ENDKCTIRRLAMNFFLSGKVLYKKTTIWCSFSVLMRRKQNKL 178

[Close]

BLAST of Pay0012085 vs. ExPASy TrEMBL
Match: A0A5A7TRL7 (Ribonuclease H OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold284G00010 PE=4 SV=1)

HSP 1 Score: 206.8 bits (525), Expect = 5.6e-50
Identity = 103/124 (83.06%), Postives = 108/124 (87.10%), Query Frame = 0


Query: 1    MSIKRLKVLGDSMLVIHQVKED------------QYVTKLSQNFEKISFDHVLREDNRMV 60
            MSIK+LKVLGDSMLVIHQVKE+            QYVTKLSQNFEKISFDHV REDNRM 
Sbjct: 1295 MSIKKLKVLGDSMLVIHQVKEEWETRHAKLVPYSQYVTKLSQNFEKISFDHVPREDNRMA 1354

Query: 61   DALATLAVMFDLNLEFELHPIRITKRDVPAYCVNVENDNKPWCFDIKQYIKCREYPYEAL 113
            DALATLA+MFDLNLEFELHPI+ITKRDVPAYC+NV NDNKPW FDIKQYIKCREYPYEAL
Sbjct: 1355 DALATLAMMFDLNLEFELHPIQITKRDVPAYCMNVGNDNKPWYFDIKQYIKCREYPYEAL 1414

[Close]

BLAST of Pay0012085 vs. ExPASy TrEMBL
Match: A0A5A7T0A1 (Ribonuclease H OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold86G00070 PE=4 SV=1)

HSP 1 Score: 205.7 bits (522), Expect = 1.2e-49
Identity = 103/124 (83.06%), Postives = 107/124 (86.29%), Query Frame = 0


Query: 1   MSIKRLKVLGDSMLVIHQVKED------------QYVTKLSQNFEKISFDHVLREDNRMV 60
           MSIK+LKVLGDSMLVIHQVKE+            QYVTKLSQNFEKISFDHV REDNRM 
Sbjct: 369 MSIKKLKVLGDSMLVIHQVKEEWEIRDAKLVPYSQYVTKLSQNFEKISFDHVPREDNRMA 428

Query: 61  DALATLAVMFDLNLEFELHPIRITKRDVPAYCVNVENDNKPWCFDIKQYIKCREYPYEAL 113
           DALATLAVMFDLNLEFELHPI+ITKRDVPAYC+NV NDNKPW FDIKQYIKCREYPYEA 
Sbjct: 429 DALATLAVMFDLNLEFELHPIQITKRDVPAYCMNVGNDNKPWYFDIKQYIKCREYPYEAS 488

[Close]

BLAST of Pay0012085 vs. ExPASy TrEMBL
Match: A0A5D3DMD2 (Ribonuclease H OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold717G00160 PE=4 SV=1)

HSP 1 Score: 205.7 bits (522), Expect = 1.2e-49
Identity = 103/124 (83.06%), Postives = 107/124 (86.29%), Query Frame = 0


Query: 1   MSIKRLKVLGDSMLVIHQVKED------------QYVTKLSQNFEKISFDHVLREDNRMV 60
           MSIK+LKVLGDSMLVIHQVKE+            QYVTKLSQNFEKISFDHV REDNRM 
Sbjct: 454 MSIKKLKVLGDSMLVIHQVKEEWETRDAKLVPYSQYVTKLSQNFEKISFDHVPREDNRMA 513

Query: 61  DALATLAVMFDLNLEFELHPIRITKRDVPAYCVNVENDNKPWCFDIKQYIKCREYPYEAL 113
           DALATLAVMFDLNLEFELHPI+ITKRDVPAYC+NV NDNKPW FDIKQYIKCREYPYEA 
Sbjct: 514 DALATLAVMFDLNLEFELHPIQITKRDVPAYCMNVGNDNKPWYFDIKQYIKCREYPYEAS 573

[Close]

BLAST of Pay0012085 vs. ExPASy TrEMBL
Match: A0A5A7T7R4 (Ribonuclease H OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold277G002820 PE=4 SV=1)

HSP 1 Score: 205.7 bits (522), Expect = 1.2e-49
Identity = 103/124 (83.06%), Postives = 107/124 (86.29%), Query Frame = 0


Query: 1    MSIKRLKVLGDSMLVIHQVKED------------QYVTKLSQNFEKISFDHVLREDNRMV 60
            MSIK+LKVLGDSMLVIHQVKE+            QYVTKLSQNFEKISFDHV REDNRM 
Sbjct: 1423 MSIKKLKVLGDSMLVIHQVKEEWETRHAKLVPYSQYVTKLSQNFEKISFDHVPREDNRMA 1482

Query: 61   DALATLAVMFDLNLEFELHPIRITKRDVPAYCVNVENDNKPWCFDIKQYIKCREYPYEAL 113
            DALATLAVMFDLNLEFELHPI+ITKRDVPAYC+NV NDNKPW FDIKQYIKCREYPYEA 
Sbjct: 1483 DALATLAVMFDLNLEFELHPIQITKRDVPAYCMNVGNDNKPWYFDIKQYIKCREYPYEAS 1542

[Close]

BLAST of Pay0012085 vs. NCBI nr
Match: XP_016901285.1 (PREDICTED: uncharacterized protein LOC107991219 [Cucumis melo])

HSP 1 Score: 218.4 bits (555), Expect = 3.8e-53
Identity = 115/162 (70.99%), Postives = 124/162 (76.54%), Query Frame = 0


Query: 1   MSIKRLKVLGDSMLVIHQVKED------------QYVTKLSQNFEKISFDHVLREDNRMV 60
           M IK+LKVLGDSML+IHQVKE+            QYVTKLSQNFEKISFDHV REDNR+ 
Sbjct: 17  MRIKKLKVLGDSMLMIHQVKEEWEIRDAKLVPYSQYVTKLSQNFEKISFDHVPREDNRLA 76

Query: 61  DALATLAVMFDLNLEFELHPIRITKRDVPAYCVNVENDNKPWCFDIKQYIKCREYPYEAL 120
           DALATLA+MFDLNLE ELHPI+ITKRDV +YC+NV NDNKPW FDIKQYIKCREYPYE L
Sbjct: 77  DALATLAMMFDLNLECELHPIQITKRDVSSYCMNVGNDNKPWYFDIKQYIKCREYPYETL 136

Query: 121 ENDKLV------------KFFVKETTIWCSFSVLM-RKQNKL 138
           ENDK              K   K+TTIWCSFSVLM RKQNKL
Sbjct: 137 ENDKCTIRRLAMNFFLSGKVLYKKTTIWCSFSVLMRRKQNKL 178

[Close]

BLAST of Pay0012085 vs. NCBI nr
Match: KAA0046213.1 (uncharacterized protein E6C27_scaffold284G00010 [Cucumis melo var. makuwa])

HSP 1 Score: 206.8 bits (525), Expect = 1.2e-49
Identity = 103/124 (83.06%), Postives = 108/124 (87.10%), Query Frame = 0


Query: 1    MSIKRLKVLGDSMLVIHQVKED------------QYVTKLSQNFEKISFDHVLREDNRMV 60
            MSIK+LKVLGDSMLVIHQVKE+            QYVTKLSQNFEKISFDHV REDNRM 
Sbjct: 1295 MSIKKLKVLGDSMLVIHQVKEEWETRHAKLVPYSQYVTKLSQNFEKISFDHVPREDNRMA 1354

Query: 61   DALATLAVMFDLNLEFELHPIRITKRDVPAYCVNVENDNKPWCFDIKQYIKCREYPYEAL 113
            DALATLA+MFDLNLEFELHPI+ITKRDVPAYC+NV NDNKPW FDIKQYIKCREYPYEAL
Sbjct: 1355 DALATLAMMFDLNLEFELHPIQITKRDVPAYCMNVGNDNKPWYFDIKQYIKCREYPYEAL 1414

[Close]

BLAST of Pay0012085 vs. NCBI nr
Match: KAA0037621.1 (uncharacterized protein E6C27_scaffold277G002820 [Cucumis melo var. makuwa])

HSP 1 Score: 205.7 bits (522), Expect = 2.6e-49
Identity = 103/124 (83.06%), Postives = 107/124 (86.29%), Query Frame = 0


Query: 1    MSIKRLKVLGDSMLVIHQVKED------------QYVTKLSQNFEKISFDHVLREDNRMV 60
            MSIK+LKVLGDSMLVIHQVKE+            QYVTKLSQNFEKISFDHV REDNRM 
Sbjct: 1423 MSIKKLKVLGDSMLVIHQVKEEWETRHAKLVPYSQYVTKLSQNFEKISFDHVPREDNRMA 1482

Query: 61   DALATLAVMFDLNLEFELHPIRITKRDVPAYCVNVENDNKPWCFDIKQYIKCREYPYEAL 113
            DALATLAVMFDLNLEFELHPI+ITKRDVPAYC+NV NDNKPW FDIKQYIKCREYPYEA 
Sbjct: 1483 DALATLAVMFDLNLEFELHPIQITKRDVPAYCMNVGNDNKPWYFDIKQYIKCREYPYEAS 1542

[Close]

BLAST of Pay0012085 vs. NCBI nr
Match: KAA0060419.1 (putative RNA-directed DNA polymerase [Cucumis melo var. makuwa])

HSP 1 Score: 205.7 bits (522), Expect = 2.6e-49
Identity = 103/124 (83.06%), Postives = 107/124 (86.29%), Query Frame = 0


Query: 1   MSIKRLKVLGDSMLVIHQVKED------------QYVTKLSQNFEKISFDHVLREDNRMV 60
           MSIK+LKVLGDSMLVIHQVKE+            QYVTKLSQNFEKISFDHV REDNRM 
Sbjct: 56  MSIKKLKVLGDSMLVIHQVKEEWETRHAKLVPYSQYVTKLSQNFEKISFDHVPREDNRMA 115

Query: 61  DALATLAVMFDLNLEFELHPIRITKRDVPAYCVNVENDNKPWCFDIKQYIKCREYPYEAL 113
           DALATLAVMFDLNLEFELHPI+ITKRDVPAYC+NV NDNKPW FDIKQYIKCREYPYEA 
Sbjct: 116 DALATLAVMFDLNLEFELHPIQITKRDVPAYCMNVGNDNKPWYFDIKQYIKCREYPYEAS 175

[Close]

BLAST of Pay0012085 vs. NCBI nr
Match: KAA0036934.1 (uncharacterized protein E6C27_scaffold86G00070 [Cucumis melo var. makuwa])

HSP 1 Score: 205.7 bits (522), Expect = 2.6e-49
Identity = 103/124 (83.06%), Postives = 107/124 (86.29%), Query Frame = 0


Query: 1   MSIKRLKVLGDSMLVIHQVKED------------QYVTKLSQNFEKISFDHVLREDNRMV 60
           MSIK+LKVLGDSMLVIHQVKE+            QYVTKLSQNFEKISFDHV REDNRM 
Sbjct: 369 MSIKKLKVLGDSMLVIHQVKEEWEIRDAKLVPYSQYVTKLSQNFEKISFDHVPREDNRMA 428

Query: 61  DALATLAVMFDLNLEFELHPIRITKRDVPAYCVNVENDNKPWCFDIKQYIKCREYPYEAL 113
           DALATLAVMFDLNLEFELHPI+ITKRDVPAYC+NV NDNKPW FDIKQYIKCREYPYEA 
Sbjct: 429 DALATLAVMFDLNLEFELHPIQITKRDVPAYCMNVGNDNKPWYFDIKQYIKCREYPYEAS 488

The following BLAST results are available for this feature:

BLAST of Pay0012085 vs.


Match Name	E-value	Identity	Description

BLAST of Pay0012085 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S4DZX1	1.9e-53	70.99	uncharacterized protein LOC107991219 OS=Cucumis melo OX=3656 GN=LOC107991219 PE=...	[more]
A0A5A7TRL7	5.6e-50	83.06	Ribonuclease H OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold284G00010...	[more]
A0A5A7T0A1	1.2e-49	83.06	Ribonuclease H OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold86G00070 ...	[more]
A0A5D3DMD2	1.2e-49	83.06	Ribonuclease H OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold717G00160...	[more]
A0A5A7T7R4	1.2e-49	83.06	Ribonuclease H OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold277G00282...	[more]

BLAST of Pay0012085 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_016901285.1	3.8e-53	70.99	PREDICTED: uncharacterized protein LOC107991219 [Cucumis melo]	[more]
KAA0046213.1	1.2e-49	83.06	uncharacterized protein E6C27_scaffold284G00010 [Cucumis melo var. makuwa]	[more]
KAA0037621.1	2.6e-49	83.06	uncharacterized protein E6C27_scaffold277G002820 [Cucumis melo var. makuwa]	[more]
KAA0060419.1	2.6e-49	83.06	putative RNA-directed DNA polymerase [Cucumis melo var. makuwa]	[more]
KAA0036934.1	2.6e-49	83.06	uncharacterized protein E6C27_scaffold86G00070 [Cucumis melo var. makuwa]	[more]

BLAST of Pay0012085 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (Payzawat) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002156	Ribonuclease H domain	PFAM	PF13456	RVT_3	coord: 3..55 e-value: 3.7E-6 score: 26.7
IPR036397	Ribonuclease H superfamily	GENE3D	3.30.420.10		coord: 1..59 e-value: 3.9E-7 score: 32.1
None	No IPR available	PANTHER	PTHR46387	POLYNUCLEOTIDYL TRANSFERASE, RIBONUCLEASE H-LIKE SUPERFAMILY PROTEIN	coord: 2..113
None	No IPR available	PANTHER	PTHR46387:SF5	DNA POLYMERASE (REVERSE TRANSCRIPTASE), RIBONUCLEASE H, PUTATIVE-RELATED	coord: 2..113

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Pay0012085.1	Pay0012085.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015074	DNA integration
biological_process	GO:0006310	DNA recombination
biological_process	GO:0006278	RNA-dependent DNA biosynthetic process
biological_process	GO:0090502	RNA phosphodiester bond hydrolysis, endonucleolytic
cellular_component	GO:0030430	host cell cytoplasm
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003887	DNA-directed DNA polymerase activity
molecular_function	GO:0003723	RNA binding
molecular_function	GO:0003964	RNA-directed DNA polymerase activity
molecular_function	GO:0004523	RNA-DNA hybrid ribonuclease activity
molecular_function	GO:0003676	nucleic acid binding