Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCAACAAATAAGGCTGCATCAAAATCTTCTGTTGCAAGTGACTCTTACATTGGACTTGTCACCCAAAGTCACTTGAAGAGAAGCATGCAAGAACAAGAACAAGGTTTTTTCCTCAAGAAGAAAAGTTTGGAACAACTGATAGAATCTCCTAAAGGCGGGATCATCATCAAAGATAATCCTTTGTTCAACAACTCTACGCCTGTTTCTAATCTATCAGACAAAGAATCACACCTTGAAGAAGTGTCTGTCATGATGGTAGATGTAACAGCTGAGGCAACCATGGTAGAGATGGAGAGAAAAATAAATTTCCTAATGAAAGTTGTTGAGGAGCGAGATCATGAAATTGCCGCCTTAAAAAATCAAATGAAGGCTTGTGAAACTGCTGAGTCAAGTCAAACTCTTGTTGTCAAAGCTACTGATAAAGGGAAGAATGTAGTGCAGGAAAACCAACCACAACAAAAATCAGTCTCTGTTGCTTCTCCCTCAGTTCAGCAACTACAGGATATGATCGCGAATTCCATTAGAGCTTAGTATGGAGCACCACCACAAACTTCTTTCATGTATTCTAAGCCGTACACTAAGAGAATCAACAACTTGAGAATTCCACTTGGGTACCAACCTCCAAAATTCCAGCAATTCGATGGAAAGGGCAACCCAAAGCAGCATATCGCTCACTTTGTCGAAACATGCAAAAATGCAGGATCAAGAGGAGACCAACTAGTCAGGCAGTTCGTTCGAAGCTTAAAAGGAAATGCTTTCGAGTGGTATACTGATCTAGAGCCAGAAGTAATTGATAGCTGGGAGCAACTGAAAATAGAGTTTCTCAACCGCTTTTATAGCACTAGGCGTGTCGTCATGATGGAGTTAACAAATATAGAACAGCGGAAGAGAGAGCCAGTCATCGACTATATAAACCGATGGAGAGCTCTAAGCCTGGATTGCAAAGACAAGCTCACAGAACTGTCTGCAATAGAGATGTGCACCCAAGGTATGCACTGGGAACTTCTCTATATTTTACAGGGAATAAAACCTCGCACATTTGAAGAATTGGCAACACGCGCCCATGATATGGAGTTGAGTATAGCCAACAGAGGAGCAAAAGATTTCTTGGTTCAAAGAACAAGGAGTGACAAGAATGAAATCAATGACACTAAAAAGATTGCAAATAATGTCCTAAACGAGTCTATGCTTGTTCAAAAGACTCCATTGAAATCTTTCTCTAAAAGAAAATAA
mRNA sequence
ATGGCAACAAATAAGGCTGCATCAAAATCTTCTGTTGCAAGTGACTCTTACATTGGACTTGTCACCCAAAGTCACTTGAAGAGAAGCATGCAAGAACAAGAACAAGGTTTTTTCCTCAAGAAGAAAAGTTTGGAACAACTGATAGAATCTCCTAAAGGCGGGATCATCATCAAAGATAATCCTTTGTTCAACAACTCTACGCCTGTTTCTAATCTATCAGACAAAGAATCACACCTTGAAGAAGTGTCTGTCATGATGGTAGATGTAACAGCTGAGGCAACCATGGTAGAGATGGAGAGAAAAATAAATTTCCTAATGAAAGTTGTTGAGGAGCGAGATCATGAAATTGCCGCCTTAAAAAATCAAATGAAGGCTTGTGAAACTGCTGAGTCAAGTCAAACTCTTGTTGTCAAAGCTACTGATAAAGGGAAGAATTATGGAGCACCACCACAAACTTCTTTCATGTATTCTAAGCCGTACACTAAGAGAATCAACAACTTGAGAATTCCACTTGGGTACCAACCTCCAAAATTCCAGCAATTCGATGGAAAGGGCAACCCAAAGCAGCATATCGCTCACTTTGTCGAAACATGCAAAAATGCAGGATCAAGAGGAGACCAACTAGTCAGGCAGTTCGTTCGAAGCTTAAAAGGAAATGCTTTCGAGTGGTATACTGATCTAGAGCCAGAAGTAATTGATAGCTGGGAGCAACTGAAAATAGAGTTTCTCAACCGCTTTTATAGCACTAGGCGTGTCGTCATGATGGAGTTAACAAATATAGAACAGCGGAAGAGAGAGCCAGTCATCGACTATATAAACCGATGGAGAGCTCTAAGCCTGGATTGCAAAGACAAGCTCACAGAACTGTCTGCAATAGAGATGTGCACCCAAGGTATGCACTGGGAACTTCTCTATATTTTACAGGGAATAAAACCTCGCACATTTGAAGAATTGGCAACACGCGCCCATGATATGGAGTTGAGTATAGCCAACAGAGGAGCAAAAGATTTCTTGGTTCAAAGAACAAGGAGTGACAAGAATGAAATCAATGACACTAAAAAGATTGCAAATAATGTCCTAAACGAGTCTATGCTTGTTCAAAAGACTCCATTGAAATCTTTCTCTAAAAGAAAATAA
Coding sequence (CDS)
ATGGCAACAAATAAGGCTGCATCAAAATCTTCTGTTGCAAGTGACTCTTACATTGGACTTGTCACCCAAAGTCACTTGAAGAGAAGCATGCAAGAACAAGAACAAGGTTTTTTCCTCAAGAAGAAAAGTTTGGAACAACTGATAGAATCTCCTAAAGGCGGGATCATCATCAAAGATAATCCTTTGTTCAACAACTCTACGCCTGTTTCTAATCTATCAGACAAAGAATCACACCTTGAAGAAGTGTCTGTCATGATGGTAGATGTAACAGCTGAGGCAACCATGGTAGAGATGGAGAGAAAAATAAATTTCCTAATGAAAGTTGTTGAGGAGCGAGATCATGAAATTGCCGCCTTAAAAAATCAAATGAAGGCTTGTGAAACTGCTGAGTCAAGTCAAACTCTTGTTGTCAAAGCTACTGATAAAGGGAAGAATTATGGAGCACCACCACAAACTTCTTTCATGTATTCTAAGCCGTACACTAAGAGAATCAACAACTTGAGAATTCCACTTGGGTACCAACCTCCAAAATTCCAGCAATTCGATGGAAAGGGCAACCCAAAGCAGCATATCGCTCACTTTGTCGAAACATGCAAAAATGCAGGATCAAGAGGAGACCAACTAGTCAGGCAGTTCGTTCGAAGCTTAAAAGGAAATGCTTTCGAGTGGTATACTGATCTAGAGCCAGAAGTAATTGATAGCTGGGAGCAACTGAAAATAGAGTTTCTCAACCGCTTTTATAGCACTAGGCGTGTCGTCATGATGGAGTTAACAAATATAGAACAGCGGAAGAGAGAGCCAGTCATCGACTATATAAACCGATGGAGAGCTCTAAGCCTGGATTGCAAAGACAAGCTCACAGAACTGTCTGCAATAGAGATGTGCACCCAAGGTATGCACTGGGAACTTCTCTATATTTTACAGGGAATAAAACCTCGCACATTTGAAGAATTGGCAACACGCGCCCATGATATGGAGTTGAGTATAGCCAACAGAGGAGCAAAAGATTTCTTGGTTCAAAGAACAAGGAGTGACAAGAATGAAATCAATGACACTAAAAAGATTGCAAATAATGTCCTAAACGAGTCTATGCTTGTTCAAAAGACTCCATTGAAATCTTTCTCTAAAAGAAAATAA
Protein sequence
MATNKAASKSSVASDSYIGLVTQSHLKRSMQEQEQGFFLKKKSLEQLIESPKGGIIIKDNPLFNNSTPVSNLSDKESHLEEVSVMMVDVTAEATMVEMERKINFLMKVVEERDHEIAALKNQMKACETAESSQTLVVKATDKGKNYGAPPQTSFMYSKPYTKRINNLRIPLGYQPPKFQQFDGKGNPKQHIAHFVETCKNAGSRGDQLVRQFVRSLKGNAFEWYTDLEPEVIDSWEQLKIEFLNRFYSTRRVVMMELTNIEQRKREPVIDYINRWRALSLDCKDKLTELSAIEMCTQGMHWELLYILQGIKPRTFEELATRAHDMELSIANRGAKDFLVQRTRSDKNEINDTKKIANNVLNESMLVQKTPLKSFSKRK
Homology
BLAST of Pay0012053 vs. ExPASy TrEMBL
Match:
A0A5A7SXL9 (Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold43059G001290 PE=4 SV=1)
HSP 1 Score: 669.5 bits (1726), Expect = 8.4e-189
Identity = 351/414 (84.78%), Postives = 367/414 (88.65%), Query Frame = 0
Query: 1 MATNKAASKSSVASDSYIGLVTQSHLKRSM--QEQEQGFFLKKKSLEQLIESPKGGIIIK 60
MATNKAASKSSVASDSYIGLVTQSHLKRSM QEQEQGF LKKKSLEQLIESPKGGIII+
Sbjct: 1 MATNKAASKSSVASDSYIGLVTQSHLKRSMQEQEQEQGFVLKKKSLEQLIESPKGGIIIR 60
Query: 61 DNPLFNNSTPVSNLSDKESHLEEVSVMMVDVTAEATMVEMERKINFLMKVVEERDHEIAA 120
DNPLFNNSTP SNLSDK SHLE VSVMMVDVTAEAT+ EMERKINFLMKV+EERDHEIAA
Sbjct: 61 DNPLFNNSTPASNLSDKASHLEVVSVMMVDVTAEATVTEMERKINFLMKVIEERDHEIAA 120
Query: 121 LKNQMKACETAESSQTLVVKATDKGKN--------------------------------- 180
LK+QMKACET ESSQT VVKATDKGKN
Sbjct: 121 LKDQMKACETGESSQTPVVKATDKGKNVVQENQPQQQSVSVASLSVQQLQDMIANSIRAQ 180
Query: 181 YGAPPQTSFMYSKPYTKRINNLRIPLGYQPPKFQQFDGKGNPKQHIAHFVETCKNAGSRG 240
YG PPQTSFMYSK YTKRI+NLR+PLGYQPPKFQQFDG+GNPKQHIAHFVETC+NAGSRG
Sbjct: 181 YGGPPQTSFMYSKSYTKRIDNLRMPLGYQPPKFQQFDGRGNPKQHIAHFVETCENAGSRG 240
Query: 241 DQLVRQFVRSLKGNAFEWYTDLEPEVIDSWEQLKIEFLNRFYSTRRVV-MMELTNIEQRK 300
DQLV+QFVRSLKGNAFEWYTDLEPEVID+WEQL+IEFLNRFYSTRRVV MMELTN +QRK
Sbjct: 241 DQLVKQFVRSLKGNAFEWYTDLEPEVIDNWEQLEIEFLNRFYSTRRVVSMMELTNTKQRK 300
Query: 301 REPVIDYINRWRALSLDCKDKLTELSAIEMCTQGMHWELLYILQGIKPRTFEELATRAHD 360
EPVIDYINRWRALSLDCKDKLTELSA+EMCTQGMHWELLYILQGIKPRTFEELATRAHD
Sbjct: 301 GEPVIDYINRWRALSLDCKDKLTELSAVEMCTQGMHWELLYILQGIKPRTFEELATRAHD 360
Query: 361 MELSIANRGAKDFLVQRTRSDKNEINDTKKIANNVLNESMLVQKTPLKSFSKRK 379
MELSIAN+GAKDFLVQRTRSD+NEINDTKKIANNVLNESMLVQ+TPLKSFSKRK
Sbjct: 361 MELSIANKGAKDFLVQRTRSDRNEINDTKKIANNVLNESMLVQETPLKSFSKRK 414
BLAST of Pay0012053 vs. ExPASy TrEMBL
Match:
E5GCP6 (Ty3-gypsy retrotransposon protein OS=Cucumis melo subsp. melo OX=412675 PE=4 SV=1)
HSP 1 Score: 669.5 bits (1726), Expect = 8.4e-189
Identity = 351/414 (84.78%), Postives = 367/414 (88.65%), Query Frame = 0
Query: 1 MATNKAASKSSVASDSYIGLVTQSHLKRSM--QEQEQGFFLKKKSLEQLIESPKGGIIIK 60
MATNKAASKSSVASDSYIGLVTQSHLKRSM QEQEQGF LKKKSLEQLIESPKGGIII+
Sbjct: 1 MATNKAASKSSVASDSYIGLVTQSHLKRSMQEQEQEQGFVLKKKSLEQLIESPKGGIIIR 60
Query: 61 DNPLFNNSTPVSNLSDKESHLEEVSVMMVDVTAEATMVEMERKINFLMKVVEERDHEIAA 120
DNPLFNNSTP SNLSDK SHLE VSVMMVDVTAEAT+ EMERKINFLMKV+EERDHEIAA
Sbjct: 61 DNPLFNNSTPASNLSDKASHLEVVSVMMVDVTAEATVTEMERKINFLMKVIEERDHEIAA 120
Query: 121 LKNQMKACETAESSQTLVVKATDKGKN--------------------------------- 180
LK+QMKACET ESSQT VVKATDKGKN
Sbjct: 121 LKDQMKACETGESSQTPVVKATDKGKNVVQENQPQQQSVSVASLSVQQLQDMIANSIRAQ 180
Query: 181 YGAPPQTSFMYSKPYTKRINNLRIPLGYQPPKFQQFDGKGNPKQHIAHFVETCKNAGSRG 240
YG PPQTSFMYSK YTKRI+NLR+PLGYQPPKFQQFDG+GNPKQHIAHFVETC+NAGSRG
Sbjct: 181 YGGPPQTSFMYSKSYTKRIDNLRMPLGYQPPKFQQFDGRGNPKQHIAHFVETCENAGSRG 240
Query: 241 DQLVRQFVRSLKGNAFEWYTDLEPEVIDSWEQLKIEFLNRFYSTRRVV-MMELTNIEQRK 300
DQLV+QFVRSLKGNAFEWYTDLEPEVID+WEQL+IEFLNRFYSTRRVV MMELTN +QRK
Sbjct: 241 DQLVKQFVRSLKGNAFEWYTDLEPEVIDNWEQLEIEFLNRFYSTRRVVSMMELTNTKQRK 300
Query: 301 REPVIDYINRWRALSLDCKDKLTELSAIEMCTQGMHWELLYILQGIKPRTFEELATRAHD 360
EPVIDYINRWRALSLDCKDKLTELSA+EMCTQGMHWELLYILQGIKPRTFEELATRAHD
Sbjct: 301 GEPVIDYINRWRALSLDCKDKLTELSAVEMCTQGMHWELLYILQGIKPRTFEELATRAHD 360
Query: 361 MELSIANRGAKDFLVQRTRSDKNEINDTKKIANNVLNESMLVQKTPLKSFSKRK 379
MELSIAN+GAKDFLVQRTRSD+NEINDTKKIANNVLNESMLVQ+TPLKSFSKRK
Sbjct: 361 MELSIANKGAKDFLVQRTRSDRNEINDTKKIANNVLNESMLVQETPLKSFSKRK 414
BLAST of Pay0012053 vs. ExPASy TrEMBL
Match:
A0A5A7SU65 (Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold104G00940 PE=4 SV=1)
HSP 1 Score: 668.3 bits (1723), Expect = 1.9e-188
Identity = 349/412 (84.71%), Postives = 364/412 (88.35%), Query Frame = 0
Query: 1 MATNKAASKSSVASDSYIGLVTQSHLKRSMQEQEQGFFLKKKSLEQLIESPKGGIIIKDN 60
MA+ AASKSS ASDSYIGLVTQSHLKRSMQEQEQGF LKKKSLEQLIESPKG III+DN
Sbjct: 1 MASKNAASKSSAASDSYIGLVTQSHLKRSMQEQEQGFVLKKKSLEQLIESPKGEIIIRDN 60
Query: 61 PLFNNSTPVSNLSDKESHLEEVSVMMVDVTAEATMVEMERKINFLMKVVEERDHEIAALK 120
PLFNNSTP SNLSDKESHLE VSVMMVDVTAEATM +MERKINFLMKVVEERDHEIAALK
Sbjct: 61 PLFNNSTPASNLSDKESHLEVVSVMMVDVTAEATMAKMERKINFLMKVVEERDHEIAALK 120
Query: 121 NQMKACETAESSQTLVVKATDKGKN---------------------------------YG 180
+QMKACETAESSQT VVKATDK KN YG
Sbjct: 121 DQMKACETAESSQTPVVKATDKEKNVVQENQPQQQSVSVASLSVQQLQDMIENSIRAQYG 180
Query: 181 APPQTSFMYSKPYTKRINNLRIPLGYQPPKFQQFDGKGNPKQHIAHFVETCKNAGSRGDQ 240
PPQTSFMYSKPYTKRI+NLR+PLGYQPPKFQQFDGKGNPKQHIAHFVETC+NAGSRGDQ
Sbjct: 181 GPPQTSFMYSKPYTKRIDNLRMPLGYQPPKFQQFDGKGNPKQHIAHFVETCENAGSRGDQ 240
Query: 241 LVRQFVRSLKGNAFEWYTDLEPEVIDSWEQLKIEFLNRFYSTRRVV-MMELTNIEQRKRE 300
LVRQFVRSLKGNAFEWYTDLEPEVIDSWEQL+IEFLNRFYSTR V+ MMELTN +Q+K E
Sbjct: 241 LVRQFVRSLKGNAFEWYTDLEPEVIDSWEQLEIEFLNRFYSTRHVISMMELTNTKQQKGE 300
Query: 301 PVIDYINRWRALSLDCKDKLTELSAIEMCTQGMHWELLYILQGIKPRTFEELATRAHDME 360
PVIDYINRWRALSLDCKDKLTELSA+EMCTQGMHWELLYILQGIKPRTFEELATRAHD+E
Sbjct: 301 PVIDYINRWRALSLDCKDKLTELSAVEMCTQGMHWELLYILQGIKPRTFEELATRAHDIE 360
Query: 361 LSIANRGAKDFLVQRTRSDKNEINDTKKIANNVLNESMLVQKTPLKSFSKRK 379
LSIANRGAKDFLVQRTRSDKNEINDTKKIANNVLNESML+Q+TPLKSFSKRK
Sbjct: 361 LSIANRGAKDFLVQRTRSDKNEINDTKKIANNVLNESMLIQETPLKSFSKRK 412
BLAST of Pay0012053 vs. ExPASy TrEMBL
Match:
A0A5D3DIN4 (Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold278G00020 PE=4 SV=1)
HSP 1 Score: 658.7 bits (1698), Expect = 1.5e-185
Identity = 349/412 (84.71%), Postives = 361/412 (87.62%), Query Frame = 0
Query: 1 MATNKAASKSSVASDSYIGLVTQSHLKRSMQEQEQGFFLKKKSLEQLIESPKGGIIIKDN 60
MA+ K ASKSS ASDSYIGLVTQSHLKRSMQEQEQGF LKKKSLEQLIESPKG III+DN
Sbjct: 1 MASKKVASKSSAASDSYIGLVTQSHLKRSMQEQEQGFVLKKKSLEQLIESPKGRIIIRDN 60
Query: 61 PLFNNSTPVSNLSDKESHLEEVSVMMVDVTAEATMVEMERKINFLMKVVEERDHEIAALK 120
PLFNNSTP SNLSDKESHLE VSVMMVDVT EATMVEME+KINFLMKVVEERDHEIAALK
Sbjct: 61 PLFNNSTPASNLSDKESHLEVVSVMMVDVTTEATMVEMEKKINFLMKVVEERDHEIAALK 120
Query: 121 NQMKACETAESSQTLVVKATDKGKN---------------------------------YG 180
+QMKA ETAESS+T VVKATDKGKN YG
Sbjct: 121 DQMKAYETAESSKTPVVKATDKGKNVVQENQPQQQSISVASLSVQQLQDMIVNSIRAQYG 180
Query: 181 APPQTSFMYSKPYTKRINNLRIPLGYQPPKFQQFDGKGNPKQHIAHFVETCKNAGSRGDQ 240
P QTSFMYSKPYTKRI+NLR+PLGYQPPKFQQFDGKGNPKQHIAHFVE C+NAGSRGDQ
Sbjct: 181 GPSQTSFMYSKPYTKRIDNLRMPLGYQPPKFQQFDGKGNPKQHIAHFVEKCENAGSRGDQ 240
Query: 241 LVRQFVRSLKGNAFEWYTDLEPEVIDSWEQLKIEFLNRFYSTRRVV-MMELTNIEQRKRE 300
LVRQFVRSLKGNAFEWYTDLEPEVIDSWEQL+IEFLN FYSTRRVV MMELTN +QRK E
Sbjct: 241 LVRQFVRSLKGNAFEWYTDLEPEVIDSWEQLEIEFLNCFYSTRRVVSMMELTNTKQRKGE 300
Query: 301 PVIDYINRWRALSLDCKDKLTELSAIEMCTQGMHWELLYILQGIKPRTFEELATRAHDME 360
PVIDYINRWRALSLDCKDKLTELSA+EMCTQGMH ELLYILQGIKPRTFEELATRAHDME
Sbjct: 301 PVIDYINRWRALSLDCKDKLTELSAVEMCTQGMHLELLYILQGIKPRTFEELATRAHDME 360
Query: 361 LSIANRGAKDFLVQRTRSDKNEINDTKKIANNVLNESMLVQKTPLKSFSKRK 379
LSIANRGAKDFLVQRTRSDKNEINDTKKIANNVLNESMLVQ+TPLKSFSKRK
Sbjct: 361 LSIANRGAKDFLVQRTRSDKNEINDTKKIANNVLNESMLVQETPLKSFSKRK 412
BLAST of Pay0012053 vs. ExPASy TrEMBL
Match:
A0A5A7TC87 (Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold262G00670 PE=4 SV=1)
HSP 1 Score: 655.6 bits (1690), Expect = 1.3e-184
Identity = 347/412 (84.22%), Postives = 360/412 (87.38%), Query Frame = 0
Query: 1 MATNKAASKSSVASDSYIGLVTQSHLKRSMQEQEQGFFLKKKSLEQLIESPKGGIIIKDN 60
MA+ K ASKSS ASDSYIGLVTQSHLKRSMQEQEQGF LKKKSLEQLIESPKG III+DN
Sbjct: 1 MASKKVASKSSAASDSYIGLVTQSHLKRSMQEQEQGFVLKKKSLEQLIESPKGRIIIRDN 60
Query: 61 PLFNNSTPVSNLSDKESHLEEVSVMMVDVTAEATMVEMERKINFLMKVVEERDHEIAALK 120
PLFNNSTP SNLSDKESHLE VSVMMVDVT EATMVEME+KINFLMKVVEERDHEIAALK
Sbjct: 61 PLFNNSTPASNLSDKESHLEVVSVMMVDVTTEATMVEMEKKINFLMKVVEERDHEIAALK 120
Query: 121 NQMKACETAESSQTLVVKATDKGKN---------------------------------YG 180
+QMKA ETAESS+T VVKATDKGKN YG
Sbjct: 121 DQMKAYETAESSKTPVVKATDKGKNVVQENQPQQQSISVASLSVQQLQDMIVNSIRAQYG 180
Query: 181 APPQTSFMYSKPYTKRINNLRIPLGYQPPKFQQFDGKGNPKQHIAHFVETCKNAGSRGDQ 240
P QTSFMYSKPYTKRI+NLR+PLGYQPPKFQQFDGKGNPKQHIAHFVE C+N GSRGDQ
Sbjct: 181 GPSQTSFMYSKPYTKRIDNLRMPLGYQPPKFQQFDGKGNPKQHIAHFVEKCENVGSRGDQ 240
Query: 241 LVRQFVRSLKGNAFEWYTDLEPEVIDSWEQLKIEFLNRFYSTRRVV-MMELTNIEQRKRE 300
LVR+FVRSLKGNAFEWYTDLEPEVIDSWEQL+IEFLN FYSTRRVV MMELTN +QRK E
Sbjct: 241 LVRKFVRSLKGNAFEWYTDLEPEVIDSWEQLEIEFLNCFYSTRRVVSMMELTNTKQRKGE 300
Query: 301 PVIDYINRWRALSLDCKDKLTELSAIEMCTQGMHWELLYILQGIKPRTFEELATRAHDME 360
PVIDYINRWRALSLDCKDKLTELSA+EMCTQGMH ELLYILQGIKPRTFEELATRAHDME
Sbjct: 301 PVIDYINRWRALSLDCKDKLTELSAVEMCTQGMHLELLYILQGIKPRTFEELATRAHDME 360
Query: 361 LSIANRGAKDFLVQRTRSDKNEINDTKKIANNVLNESMLVQKTPLKSFSKRK 379
LSIANRGAKDFLVQRTRSDKNEINDTKKIANNVLNESMLVQ+TPLKSFSKRK
Sbjct: 361 LSIANRGAKDFLVQRTRSDKNEINDTKKIANNVLNESMLVQETPLKSFSKRK 412
BLAST of Pay0012053 vs. NCBI nr
Match:
ADN34247.1 (ty3-gypsy retrotransposon protein [Cucumis melo subsp. melo] >KAA0033935.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa])
HSP 1 Score: 669.5 bits (1726), Expect = 1.7e-188
Identity = 351/414 (84.78%), Postives = 367/414 (88.65%), Query Frame = 0
Query: 1 MATNKAASKSSVASDSYIGLVTQSHLKRSM--QEQEQGFFLKKKSLEQLIESPKGGIIIK 60
MATNKAASKSSVASDSYIGLVTQSHLKRSM QEQEQGF LKKKSLEQLIESPKGGIII+
Sbjct: 1 MATNKAASKSSVASDSYIGLVTQSHLKRSMQEQEQEQGFVLKKKSLEQLIESPKGGIIIR 60
Query: 61 DNPLFNNSTPVSNLSDKESHLEEVSVMMVDVTAEATMVEMERKINFLMKVVEERDHEIAA 120
DNPLFNNSTP SNLSDK SHLE VSVMMVDVTAEAT+ EMERKINFLMKV+EERDHEIAA
Sbjct: 61 DNPLFNNSTPASNLSDKASHLEVVSVMMVDVTAEATVTEMERKINFLMKVIEERDHEIAA 120
Query: 121 LKNQMKACETAESSQTLVVKATDKGKN--------------------------------- 180
LK+QMKACET ESSQT VVKATDKGKN
Sbjct: 121 LKDQMKACETGESSQTPVVKATDKGKNVVQENQPQQQSVSVASLSVQQLQDMIANSIRAQ 180
Query: 181 YGAPPQTSFMYSKPYTKRINNLRIPLGYQPPKFQQFDGKGNPKQHIAHFVETCKNAGSRG 240
YG PPQTSFMYSK YTKRI+NLR+PLGYQPPKFQQFDG+GNPKQHIAHFVETC+NAGSRG
Sbjct: 181 YGGPPQTSFMYSKSYTKRIDNLRMPLGYQPPKFQQFDGRGNPKQHIAHFVETCENAGSRG 240
Query: 241 DQLVRQFVRSLKGNAFEWYTDLEPEVIDSWEQLKIEFLNRFYSTRRVV-MMELTNIEQRK 300
DQLV+QFVRSLKGNAFEWYTDLEPEVID+WEQL+IEFLNRFYSTRRVV MMELTN +QRK
Sbjct: 241 DQLVKQFVRSLKGNAFEWYTDLEPEVIDNWEQLEIEFLNRFYSTRRVVSMMELTNTKQRK 300
Query: 301 REPVIDYINRWRALSLDCKDKLTELSAIEMCTQGMHWELLYILQGIKPRTFEELATRAHD 360
EPVIDYINRWRALSLDCKDKLTELSA+EMCTQGMHWELLYILQGIKPRTFEELATRAHD
Sbjct: 301 GEPVIDYINRWRALSLDCKDKLTELSAVEMCTQGMHWELLYILQGIKPRTFEELATRAHD 360
Query: 361 MELSIANRGAKDFLVQRTRSDKNEINDTKKIANNVLNESMLVQKTPLKSFSKRK 379
MELSIAN+GAKDFLVQRTRSD+NEINDTKKIANNVLNESMLVQ+TPLKSFSKRK
Sbjct: 361 MELSIANKGAKDFLVQRTRSDRNEINDTKKIANNVLNESMLVQETPLKSFSKRK 414
BLAST of Pay0012053 vs. NCBI nr
Match:
KAA0033526.1 (ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa] >TYJ95662.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa])
HSP 1 Score: 668.3 bits (1723), Expect = 3.9e-188
Identity = 349/412 (84.71%), Postives = 364/412 (88.35%), Query Frame = 0
Query: 1 MATNKAASKSSVASDSYIGLVTQSHLKRSMQEQEQGFFLKKKSLEQLIESPKGGIIIKDN 60
MA+ AASKSS ASDSYIGLVTQSHLKRSMQEQEQGF LKKKSLEQLIESPKG III+DN
Sbjct: 1 MASKNAASKSSAASDSYIGLVTQSHLKRSMQEQEQGFVLKKKSLEQLIESPKGEIIIRDN 60
Query: 61 PLFNNSTPVSNLSDKESHLEEVSVMMVDVTAEATMVEMERKINFLMKVVEERDHEIAALK 120
PLFNNSTP SNLSDKESHLE VSVMMVDVTAEATM +MERKINFLMKVVEERDHEIAALK
Sbjct: 61 PLFNNSTPASNLSDKESHLEVVSVMMVDVTAEATMAKMERKINFLMKVVEERDHEIAALK 120
Query: 121 NQMKACETAESSQTLVVKATDKGKN---------------------------------YG 180
+QMKACETAESSQT VVKATDK KN YG
Sbjct: 121 DQMKACETAESSQTPVVKATDKEKNVVQENQPQQQSVSVASLSVQQLQDMIENSIRAQYG 180
Query: 181 APPQTSFMYSKPYTKRINNLRIPLGYQPPKFQQFDGKGNPKQHIAHFVETCKNAGSRGDQ 240
PPQTSFMYSKPYTKRI+NLR+PLGYQPPKFQQFDGKGNPKQHIAHFVETC+NAGSRGDQ
Sbjct: 181 GPPQTSFMYSKPYTKRIDNLRMPLGYQPPKFQQFDGKGNPKQHIAHFVETCENAGSRGDQ 240
Query: 241 LVRQFVRSLKGNAFEWYTDLEPEVIDSWEQLKIEFLNRFYSTRRVV-MMELTNIEQRKRE 300
LVRQFVRSLKGNAFEWYTDLEPEVIDSWEQL+IEFLNRFYSTR V+ MMELTN +Q+K E
Sbjct: 241 LVRQFVRSLKGNAFEWYTDLEPEVIDSWEQLEIEFLNRFYSTRHVISMMELTNTKQQKGE 300
Query: 301 PVIDYINRWRALSLDCKDKLTELSAIEMCTQGMHWELLYILQGIKPRTFEELATRAHDME 360
PVIDYINRWRALSLDCKDKLTELSA+EMCTQGMHWELLYILQGIKPRTFEELATRAHD+E
Sbjct: 301 PVIDYINRWRALSLDCKDKLTELSAVEMCTQGMHWELLYILQGIKPRTFEELATRAHDIE 360
Query: 361 LSIANRGAKDFLVQRTRSDKNEINDTKKIANNVLNESMLVQKTPLKSFSKRK 379
LSIANRGAKDFLVQRTRSDKNEINDTKKIANNVLNESML+Q+TPLKSFSKRK
Sbjct: 361 LSIANRGAKDFLVQRTRSDKNEINDTKKIANNVLNESMLIQETPLKSFSKRK 412
BLAST of Pay0012053 vs. NCBI nr
Match:
TYK23445.1 (ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa])
HSP 1 Score: 658.7 bits (1698), Expect = 3.1e-185
Identity = 349/412 (84.71%), Postives = 361/412 (87.62%), Query Frame = 0
Query: 1 MATNKAASKSSVASDSYIGLVTQSHLKRSMQEQEQGFFLKKKSLEQLIESPKGGIIIKDN 60
MA+ K ASKSS ASDSYIGLVTQSHLKRSMQEQEQGF LKKKSLEQLIESPKG III+DN
Sbjct: 1 MASKKVASKSSAASDSYIGLVTQSHLKRSMQEQEQGFVLKKKSLEQLIESPKGRIIIRDN 60
Query: 61 PLFNNSTPVSNLSDKESHLEEVSVMMVDVTAEATMVEMERKINFLMKVVEERDHEIAALK 120
PLFNNSTP SNLSDKESHLE VSVMMVDVT EATMVEME+KINFLMKVVEERDHEIAALK
Sbjct: 61 PLFNNSTPASNLSDKESHLEVVSVMMVDVTTEATMVEMEKKINFLMKVVEERDHEIAALK 120
Query: 121 NQMKACETAESSQTLVVKATDKGKN---------------------------------YG 180
+QMKA ETAESS+T VVKATDKGKN YG
Sbjct: 121 DQMKAYETAESSKTPVVKATDKGKNVVQENQPQQQSISVASLSVQQLQDMIVNSIRAQYG 180
Query: 181 APPQTSFMYSKPYTKRINNLRIPLGYQPPKFQQFDGKGNPKQHIAHFVETCKNAGSRGDQ 240
P QTSFMYSKPYTKRI+NLR+PLGYQPPKFQQFDGKGNPKQHIAHFVE C+NAGSRGDQ
Sbjct: 181 GPSQTSFMYSKPYTKRIDNLRMPLGYQPPKFQQFDGKGNPKQHIAHFVEKCENAGSRGDQ 240
Query: 241 LVRQFVRSLKGNAFEWYTDLEPEVIDSWEQLKIEFLNRFYSTRRVV-MMELTNIEQRKRE 300
LVRQFVRSLKGNAFEWYTDLEPEVIDSWEQL+IEFLN FYSTRRVV MMELTN +QRK E
Sbjct: 241 LVRQFVRSLKGNAFEWYTDLEPEVIDSWEQLEIEFLNCFYSTRRVVSMMELTNTKQRKGE 300
Query: 301 PVIDYINRWRALSLDCKDKLTELSAIEMCTQGMHWELLYILQGIKPRTFEELATRAHDME 360
PVIDYINRWRALSLDCKDKLTELSA+EMCTQGMH ELLYILQGIKPRTFEELATRAHDME
Sbjct: 301 PVIDYINRWRALSLDCKDKLTELSAVEMCTQGMHLELLYILQGIKPRTFEELATRAHDME 360
Query: 361 LSIANRGAKDFLVQRTRSDKNEINDTKKIANNVLNESMLVQKTPLKSFSKRK 379
LSIANRGAKDFLVQRTRSDKNEINDTKKIANNVLNESMLVQ+TPLKSFSKRK
Sbjct: 361 LSIANRGAKDFLVQRTRSDKNEINDTKKIANNVLNESMLVQETPLKSFSKRK 412
BLAST of Pay0012053 vs. NCBI nr
Match:
KAA0040518.1 (ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa])
HSP 1 Score: 655.6 bits (1690), Expect = 2.6e-184
Identity = 347/412 (84.22%), Postives = 360/412 (87.38%), Query Frame = 0
Query: 1 MATNKAASKSSVASDSYIGLVTQSHLKRSMQEQEQGFFLKKKSLEQLIESPKGGIIIKDN 60
MA+ K ASKSS ASDSYIGLVTQSHLKRSMQEQEQGF LKKKSLEQLIESPKG III+DN
Sbjct: 1 MASKKVASKSSAASDSYIGLVTQSHLKRSMQEQEQGFVLKKKSLEQLIESPKGRIIIRDN 60
Query: 61 PLFNNSTPVSNLSDKESHLEEVSVMMVDVTAEATMVEMERKINFLMKVVEERDHEIAALK 120
PLFNNSTP SNLSDKESHLE VSVMMVDVT EATMVEME+KINFLMKVVEERDHEIAALK
Sbjct: 61 PLFNNSTPASNLSDKESHLEVVSVMMVDVTTEATMVEMEKKINFLMKVVEERDHEIAALK 120
Query: 121 NQMKACETAESSQTLVVKATDKGKN---------------------------------YG 180
+QMKA ETAESS+T VVKATDKGKN YG
Sbjct: 121 DQMKAYETAESSKTPVVKATDKGKNVVQENQPQQQSISVASLSVQQLQDMIVNSIRAQYG 180
Query: 181 APPQTSFMYSKPYTKRINNLRIPLGYQPPKFQQFDGKGNPKQHIAHFVETCKNAGSRGDQ 240
P QTSFMYSKPYTKRI+NLR+PLGYQPPKFQQFDGKGNPKQHIAHFVE C+N GSRGDQ
Sbjct: 181 GPSQTSFMYSKPYTKRIDNLRMPLGYQPPKFQQFDGKGNPKQHIAHFVEKCENVGSRGDQ 240
Query: 241 LVRQFVRSLKGNAFEWYTDLEPEVIDSWEQLKIEFLNRFYSTRRVV-MMELTNIEQRKRE 300
LVR+FVRSLKGNAFEWYTDLEPEVIDSWEQL+IEFLN FYSTRRVV MMELTN +QRK E
Sbjct: 241 LVRKFVRSLKGNAFEWYTDLEPEVIDSWEQLEIEFLNCFYSTRRVVSMMELTNTKQRKGE 300
Query: 301 PVIDYINRWRALSLDCKDKLTELSAIEMCTQGMHWELLYILQGIKPRTFEELATRAHDME 360
PVIDYINRWRALSLDCKDKLTELSA+EMCTQGMH ELLYILQGIKPRTFEELATRAHDME
Sbjct: 301 PVIDYINRWRALSLDCKDKLTELSAVEMCTQGMHLELLYILQGIKPRTFEELATRAHDME 360
Query: 361 LSIANRGAKDFLVQRTRSDKNEINDTKKIANNVLNESMLVQKTPLKSFSKRK 379
LSIANRGAKDFLVQRTRSDKNEINDTKKIANNVLNESMLVQ+TPLKSFSKRK
Sbjct: 361 LSIANRGAKDFLVQRTRSDKNEINDTKKIANNVLNESMLVQETPLKSFSKRK 412
BLAST of Pay0012053 vs. NCBI nr
Match:
ADN33709.1 (retrotransposon gag protein [Cucumis melo subsp. melo])
HSP 1 Score: 617.1 bits (1590), Expect = 1.0e-172
Identity = 314/351 (89.46%), Postives = 331/351 (94.30%), Query Frame = 0
Query: 30 MQEQEQGFFLKKKSLEQLIESPKGGIIIKDNPLFNNSTPVSNLSDKESHLEEVSVMMVDV 89
MQEQEQGF LKKKSLEQLIES KGGIII+DNPLFNNSTP SNLSDKESHLE VSVMM+DV
Sbjct: 1 MQEQEQGFVLKKKSLEQLIESLKGGIIIRDNPLFNNSTPTSNLSDKESHLEVVSVMMIDV 60
Query: 90 TAEATMVEMERKINFLMKVVEERDHEIAALKNQMKACETAESSQTLVVKATDKGKN-YGA 149
TAEATM EME+KINFLMKVVEERDHEIAALK+QMKACE+AESSQT VVK TDKGKN YG
Sbjct: 61 TAEATMAEMEKKINFLMKVVEERDHEIAALKDQMKACESAESSQTSVVKTTDKGKNVYGG 120
Query: 150 PPQTSFMYSKPYTKRINNLRIPLGYQPPKFQQFDGKGNPKQHIAHFVETCKNAGSRGDQL 209
PPQTSFMYSKPYTKRI+NLR+PLGYQPPKFQQFDGKGNPKQHIAHFVETC+NAGSRGDQL
Sbjct: 121 PPQTSFMYSKPYTKRIDNLRMPLGYQPPKFQQFDGKGNPKQHIAHFVETCENAGSRGDQL 180
Query: 210 VRQFVRSLKGNAFEWYTDLEPEVIDSWEQLKIEFLNRFYSTR-RVVMMELTNIEQRKREP 269
VRQFVRSLKGNAFEWYTDLEPEV DSWEQL+ EFLNRFYST+ V MMELT +QRK +
Sbjct: 181 VRQFVRSLKGNAFEWYTDLEPEVTDSWEQLEKEFLNRFYSTKCTVSMMELTTTKQRKGDS 240
Query: 270 VIDYINRWRALSLDCKDKLTELSAIEMCTQGMHWELLYILQGIKPRTFEELATRAHDMEL 329
+IDYINRWRALSLDCKDKLTELSA+EMCTQGMHWELLYILQGIKPRTFEELATRAHDME
Sbjct: 241 IIDYINRWRALSLDCKDKLTELSAVEMCTQGMHWELLYILQGIKPRTFEELATRAHDMES 300
Query: 330 SIANRGAKDFLVQRTRSDKNEINDTKKIANNVLNESMLVQKTPLKSFSKRK 379
SIANRGAKDFLVQRTRSDKNEINDT+KIANNVLNESM+VQ+T LKSFSKRK
Sbjct: 301 SIANRGAKDFLVQRTRSDKNEINDTEKIANNVLNESMVVQETLLKSFSKRK 351
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
Match Name | E-value | Identity | Description | |
A0A5A7SXL9 | 8.4e-189 | 84.78 | Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C2... | [more] |
E5GCP6 | 8.4e-189 | 84.78 | Ty3-gypsy retrotransposon protein OS=Cucumis melo subsp. melo OX=412675 PE=4 SV=... | [more] |
A0A5A7SU65 | 1.9e-188 | 84.71 | Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E567... | [more] |
A0A5D3DIN4 | 1.5e-185 | 84.71 | Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E567... | [more] |
A0A5A7TC87 | 1.3e-184 | 84.22 | Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C2... | [more] |
Match Name | E-value | Identity | Description | |
ADN34247.1 | 1.7e-188 | 84.78 | ty3-gypsy retrotransposon protein [Cucumis melo subsp. melo] >KAA0033935.1 ty3-g... | [more] |
KAA0033526.1 | 3.9e-188 | 84.71 | ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa] >TYJ95662.1 ty3-gyp... | [more] |
TYK23445.1 | 3.1e-185 | 84.71 | ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa] | [more] |
KAA0040518.1 | 2.6e-184 | 84.22 | ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa] | [more] |
ADN33709.1 | 1.0e-172 | 89.46 | retrotransposon gag protein [Cucumis melo subsp. melo] | [more] |
Match Name | E-value | Identity | Description | |