Pay0011897 (gene) Melon (Payzawat) v1

Overview


Name	Pay0011897
Type	gene
Organism	Cucumis melo L. var. inodorus cv. Payzawat (Melon (Payzawat) v1)
Description	protein RADIALIS-like 2
Location	chr11: 4210885 .. 4213287 (-)
RNA-Seq Expression	Pay0011897
Synteny	Pay0011897

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AAATCATTCAAAATAATTTCTCACTCTCCCTTTTTCCGAAGATTTTCCCTCTCTCTGCCCCCACTTATAAAATCCCTTCCCCTTCTCCATACTCTTTCTTCTTCACCCCTTTAAATTAATTTTAATTACCAGTTTTTGCCCCTCAACAATGGCTTCCATTTCCTCTTCCTCTCACGACTCTGCCTCCTCTTCTTGGACTCCTAACCAAAACAAAGCCTTCGAAAGGGCTTTGGCTGTCTTTGACAAAGACACCCCTGATCGCTGGCTCAATGTCGCCAACGCCGTCGGCGGTGGCAAGACCCCTGACGAAGTCAAGCGGCATTTCGACCGTCTCGTCGAAGATGTCAAACACATTGAATCTGGCCGCGTTCCTTTCCCTAAATACACCTCCTCCTCCTCCTCCTCTCCTCCTCCTCCGCCCCTAGAACCTCCAATAATGCTAACATCAAAGACCAAGAACAAAGGTACCTCTCGGCCTTCATTTTTTCTTTTTCTAAGTTTTTACCTTCAATATAATACAATATTTTCTTCAACTACTAAACTACATTTTTAAAGCTTTTTTACGACAAAAAAAGTCCAACCTCTAAGTCGCTTTCAACTCACTTTTATTTTGGTTCGCTTTCGAGATTCTCTCTTCATATGTATCTCTGCAATGTTTTTATCTTTTTGATCTTCTCATCTCCACAATGTTTCTTTTTCTCTTTTCTTCTTGAAATTCCTTAGAGCTTCCTTTTAATGCCTTACAAAAAGCTATACATCTTTTTTATCACCTCCATGTCCTTCCCCTCTCTCATGTGACTTTCCTATGTATTTTCAAGTTTTTCTTTTTTCTTAACCAAACTATAATATAAACAAACCCAATTAAAAAGAATCAAATTGATTAGAGTTTTTATTTCAAAATTAAAAAACAATACAAGTTGCATCGAGTTTTCCTGCCTATCTCCTTCAATCACGTAGCAAAAAAAAAAAAAAAAAAGAAAAACGAAAAATTGTTATCTTGTAACAATGGATTGAGCTACACAAAGATCGGACCTTTACTCTATTTATAATATTTTAATTAAAGAAAAGGGTATTTGAGGATAATGGGTTCCAGAAAAAGAGAAAAGCATGCAATCCAATCATACCTCAATTGGTAAATGCAATGTTTTCTTTTTATATAAAAATAAAAGGAAAAAAAAGTCAACAGTTTACGAGAAACCAGCCTCGTGCCGGTCACGTGCCTTGCTCCTACAAATAGGGCTGATTAATTAATTAATACCAATAATTGCATTCTTAATATTATAATTAACCCTCATAATTTATGTATTAATTATTGGCGTTATCTAATCTTATAACTTAATTATTTTTTTAATGTTGATATTTTGACTTTTTCTCTGTACAATATCAAACTTGTACGGGATTGAAATTTCTAACAATCCAATTACTCACAAATAACATACACATCTTCTTTTTTCTTTCCATTTTTGGGAGCTTTTTATTCTTTAATCAAAACAAAAAAATAATTCACCCAAACTTTCAAATTAAGAAATATTTTCTCCCAAAAAAATTTTTAGAAGTTAAAAAAAAAATGAAAAATGAAGAAAATTTATATATAAAAGAAAACAGATATACGCAAACTTATAATGAAATCCAAATTGGTAACATGAGGAGGTCTATTATGCAAAATTAAAAAGAAAAGGAATATTGATCTCTATTTAAATAATTAATCTTATTGATTACGATTTTTATTTCTAATATTTTTTTAGTTTCGTTTCACTGTTCTAATTGGTTTATTTCATAAACTAAAAGAAAAAGAAAAGAAAAAGTCATTGTCTTGATTTAAATCACTAAGGTCCTTTTTTTTATGACGTACATCCCTTTGATTATATTTATGTATAAATAAGAATAATGATCTTTTTGTCGTGTTTGCTTGTCCTTCTTGTACTATTAGCCCTCCAAGTAATTTTTAAAAGATATAAAAAATATCTACTTTGGTCTTTGAATTTAAAAAATATATCTATTTTAGTTATTACAATTATTTTATTGTCAAATGCTACTCATTCTTTATCTATTTAGCATATGGAAATATCACTGCATATTTGAAGTCATGTCATCATTTGTCAAATAATTGAGATTGAAGCAATGTTAGAGATCAAAATAGTTATGGTTGAATATGAAAATTAAATTAAGTTGAACAATGCAATCATGCCAACCATCCATTTTCAGGATGGAATCAGAAACTCCATTAAATTGGTTAAAATTGAAGGCAAATGATTTAAAGAAAAAATGAAAAAGCTGATAGACTGGTTGCTGTTTTGCCCCTAACAGATAACAAAAAGATTAGTGTAGCAAATTTGCAATTTATGTGTTTTTTTTTTCTTCCTCTTGAAAGTGTATTTGCCCAACTAAAAAGCTAATCAATGT

mRNA sequence

AAATCATTCAAAATAATTTCTCACTCTCCCTTTTTCCGAAGATTTTCCCTCTCTCTGCCCCCACTTATAAAATCCCTTCCCCTTCTCCATACTCTTTCTTCTTCACCCCTTTAAATTAATTTTAATTACCAGTTTTTGCCCCTCAACAATGGCTTCCATTTCCTCTTCCTCTCACGACTCTGCCTCCTCTTCTTGGACTCCTAACCAAAACAAAGCCTTCGAAAGGGCTTTGGCTGTCTTTGACAAAGACACCCCTGATCGCTGGCTCAATGTCGCCAACGCCGTCGGCGGTGGCAAGACCCCTGACGAAGTCAAGCGGCATTTCGACCGTCTCGTCGAAGATGTCAAACACATTGAATCTGGCCGCGTTCCTTTCCCTAAATACACCTCCTCCTCCTCCTCCTCTCCTCCTCCTCCGCCCCTAGAACCTCCAATAATGCTAACATCAAAGACCAAGAACAAAGGATGGAATCAGAAACTCCATTAAATTGGTTAAAATTGAAGGCAAATGATTTAAAGAAAAAATGAAAAAGCTGATAGACTGGTTGCTGTTTTGCCCCTAACAGATAACAAAAAGATTAGTGTAGCAAATTTGCAATTTATGTGTTTTTTTTTTCTTCCTCTTGAAAGTGTATTTGCCCAACTAAAAAGCTAATCAATGT

Coding sequence (CDS)

ATGGCTTCCATTTCCTCTTCCTCTCACGACTCTGCCTCCTCTTCTTGGACTCCTAACCAAAACAAAGCCTTCGAAAGGGCTTTGGCTGTCTTTGACAAAGACACCCCTGATCGCTGGCTCAATGTCGCCAACGCCGTCGGCGGTGGCAAGACCCCTGACGAAGTCAAGCGGCATTTCGACCGTCTCGTCGAAGATGTCAAACACATTGAATCTGGCCGCGTTCCTTTCCCTAAATACACCTCCTCCTCCTCCTCCTCTCCTCCTCCTCCGCCCCTAGAACCTCCAATAATGCTAACATCAAAGACCAAGAACAAAGGATGGAATCAGAAACTCCATTAA

Protein sequence

MASISSSSHDSASSSWTPNQNKAFERALAVFDKDTPDRWLNVANAVGGGKTPDEVKRHFDRLVEDVKHIESGRVPFPKYTSSSSSSPPPPPLEPPIMLTSKTKNKGWNQKLH

Homology

[Close]

BLAST of Pay0011897 vs. ExPASy Swiss-Prot
Match: Q9SIJ5 (Protein RADIALIS-like 2 OS=Arabidopsis thaliana OX=3702 GN=RL2 PE=2 SV=1)

HSP 1 Score: 102.8 bits (255), Expect = 2.5e-21
Identity = 54/86 (62.79%), Postives = 66/86 (76.74%), Query Frame = 0


Query: 1  MASISSSSHDSASSSWTPNQNKAFERALAVFDKDTPDRWLNVANAVGGGKTPDEVKRHFD 60
          MAS S SS+   S SWT  QNKAFERALAV+D+DTPDRW NVA AV GGKTP+E KR +D
Sbjct: 1  MASGSMSSY--GSGSWTVKQNKAFERALAVYDQDTPDRWHNVARAV-GGKTPEEAKRQYD 60

Query: 61 RLVEDVKHIESGRVPFPKYTSSSSSS 87
           LV D++ IE+G VPFP Y +++ +S
Sbjct: 61 LLVRDIESIENGHVPFPDYKTTTGNS 83

[Close]

BLAST of Pay0011897 vs. ExPASy Swiss-Prot
Match: Q58FS3 (Transcription factor RADIALIS OS=Antirrhinum majus OX=4151 GN=RAD PE=1 SV=1)

HSP 1 Score: 101.7 bits (252), Expect = 5.6e-21
Identity = 45/70 (64.29%), Postives = 59/70 (84.29%), Query Frame = 0


Query: 16 WTPNQNKAFERALAVFDKDTPDRWLNVANAVGGGKTPDEVKRHFDRLVEDVKHIESGRVP 75
          W+  +NKAFERALAV+DKDTPDRW NVA AV  G+TP+EVK+H++ LVED+K+IESG+VP
Sbjct: 11 WSAKENKAFERALAVYDKDTPDRWANVARAV-EGRTPEEVKKHYEILVEDIKYIESGKVP 70

Query: 76 FPKYTSSSSS 86
          FP Y ++  +
Sbjct: 71 FPNYRTTGGN 79

[Close]

BLAST of Pay0011897 vs. ExPASy Swiss-Prot
Match: Q1A173 (Protein RADIALIS-like 6 OS=Arabidopsis thaliana OX=3702 GN=RL6 PE=2 SV=1)

HSP 1 Score: 100.5 bits (249), Expect = 1.3e-20
Identity = 52/81 (64.20%), Postives = 64/81 (79.01%), Query Frame = 0


Query: 6  SSSHDSASSSWTPNQNKAFERALAVFDKDTPDRWLNVANAVGGGKTPDEVKRHFDRLVED 65
          +S+  S+ S WT +QNK FERALAV+DKDTPDRW NVA AV GGKT +EVKRH+D LVED
Sbjct: 2  ASNSRSSISPWTFSQNKMFERALAVYDKDTPDRWHNVAKAV-GGKTVEEVKRHYDILVED 61

Query: 66 VKHIESGRVPFPKYTSSSSSS 87
          + +IE+GRVP P Y +  S+S
Sbjct: 62 LINIETGRVPLPNYKTFESNS 81

[Close]

BLAST of Pay0011897 vs. ExPASy Swiss-Prot
Match: Q8GW75 (Protein RADIALIS-like 5 OS=Arabidopsis thaliana OX=3702 GN=RL5 PE=3 SV=1)

HSP 1 Score: 98.2 bits (243), Expect = 6.2e-20
Identity = 50/74 (67.57%), Postives = 58/74 (78.38%), Query Frame = 0


Query: 6  SSSHDSASSSWTPNQNKAFERALAVFDKDTPDRWLNVANAVGGGKTPDEVKRHFDRLVED 65
          +SS  S+SSSWT  QNK FERALAV+DKDTPDRW NVA AV G K+ +EVKRH+D LVED
Sbjct: 2  ASSSMSSSSSWTSKQNKMFERALAVYDKDTPDRWQNVAKAV-GSKSAEEVKRHYDILVED 61

Query: 66 VKHIESGRVPFPKY 80
          + +IE   VP PKY
Sbjct: 62 LMNIEQDLVPLPKY 74

[Close]

BLAST of Pay0011897 vs. ExPASy Swiss-Prot
Match: F4JVB8 (Protein RADIALIS-like 1 OS=Arabidopsis thaliana OX=3702 GN=RL1 PE=2 SV=1)

HSP 1 Score: 97.8 bits (242), Expect = 8.1e-20
Identity = 47/78 (60.26%), Postives = 59/78 (75.64%), Query Frame = 0


Query: 5  SSSSHDSASSSWTPNQNKAFERALAVFDKDTPDRWLNVANAVGGGKTPDEVKRHFDRLVE 64
          SSS    +S SWT  QNKAFE+ALA +D+DTP+RW NVA  V GGKT +EVKRH++ LV+
Sbjct: 3  SSSMSSQSSGSWTAKQNKAFEQALATYDQDTPNRWQNVAKVV-GGKTTEEVKRHYELLVQ 62

Query: 65 DVKHIESGRVPFPKYTSS 83
          D+  IE+G VPFP Y +S
Sbjct: 63 DINSIENGHVPFPNYRTS 79

[Close]

BLAST of Pay0011897 vs. ExPASy TrEMBL
Match: A0A1S3CDK8 (protein RADIALIS-like 2 OS=Cucumis melo OX=3656 GN=LOC103499673 PE=4 SV=1)

HSP 1 Score: 173.3 bits (438), Expect = 5.6e-40
Identity = 87/89 (97.75%), Postives = 87/89 (97.75%), Query Frame = 0


Query: 1  MASISSSSHDSASSSWTPNQNKAFERALAVFDKDTPDRWLNVANAVGGGKTPDEVKRHFD 60
          MASISSSSHDSASSSWTPNQNKAFERALAVFDKDTPDRWLNVANAVGGGKTPDEVKRHFD
Sbjct: 1  MASISSSSHDSASSSWTPNQNKAFERALAVFDKDTPDRWLNVANAVGGGKTPDEVKRHFD 60

Query: 61 RLVEDVKHIESGRVPFPKYTSSSSSSPPP 90
          RLVEDVKHIESGRVPFPKYTSSSSSS  P
Sbjct: 61 RLVEDVKHIESGRVPFPKYTSSSSSSSAP 89

[Close]

BLAST of Pay0011897 vs. ExPASy TrEMBL
Match: A0A0A0LL58 (MYB transcription factor MYB142 OS=Cucumis sativus OX=3659 GN=Csa_2G247060 PE=4 SV=1)

HSP 1 Score: 154.5 bits (389), Expect = 2.7e-34
Identity = 79/85 (92.94%), Postives = 79/85 (92.94%), Query Frame = 0


Query: 1  MASISSSSHDSASSSWTPNQNKAFERALAVFDKDTPDRWLNVANAVGGGKTPDEVKRHFD 60
          MASISSS     SSSWTPNQNKAFERALAVFDKDTPDRWLNVA AVGGGKTPDEVKRHFD
Sbjct: 1  MASISSS-----SSSWTPNQNKAFERALAVFDKDTPDRWLNVAKAVGGGKTPDEVKRHFD 60

Query: 61 RLVEDVKHIESGRVPFPKYTSSSSS 86
          RLVEDVKHIESGRVPFPKYTSSSSS
Sbjct: 61 RLVEDVKHIESGRVPFPKYTSSSSS 80

[Close]

BLAST of Pay0011897 vs. ExPASy TrEMBL
Match: A0A6J1FXX9 (protein RADIALIS-like 2 OS=Cucurbita moschata OX=3662 GN=LOC111448798 PE=4 SV=1)

HSP 1 Score: 137.1 bits (344), Expect = 4.5e-29
Identity = 69/86 (80.23%), Postives = 75/86 (87.21%), Query Frame = 0


Query: 1  MASISSSSHDSASSSWTPNQNKAFERALAVFDKDTPDRWLNVANAVGGGKTPDEVKRHFD 60
          MAS++SS     SSSWTP QNKAFERALAVFDKDTPDRWLNVA AVGGGKTPDEVK HFD
Sbjct: 1  MASMASSHR---SSSWTPKQNKAFERALAVFDKDTPDRWLNVAKAVGGGKTPDEVKTHFD 60

Query: 61 RLVEDVKHIESGRVPFPKYTSSSSSS 87
           LVEDVKHIESG VPFP Y+S++S+S
Sbjct: 61 LLVEDVKHIESGHVPFPNYSSTASAS 83

[Close]

BLAST of Pay0011897 vs. ExPASy TrEMBL
Match: A0A6J1JBS7 (protein RADIALIS-like 2 OS=Cucurbita maxima OX=3661 GN=LOC111484324 PE=4 SV=1)

HSP 1 Score: 136.7 bits (343), Expect = 5.8e-29
Identity = 68/86 (79.07%), Postives = 75/86 (87.21%), Query Frame = 0


Query: 1  MASISSSSHDSASSSWTPNQNKAFERALAVFDKDTPDRWLNVANAVGGGKTPDEVKRHFD 60
          MAS+SSS H   SSSWTP +NKAFERALAVFDKDTPDRWLNVA AVGGGKTPDEVK HFD
Sbjct: 1  MASMSSSHH---SSSWTPKENKAFERALAVFDKDTPDRWLNVAKAVGGGKTPDEVKTHFD 60

Query: 61 RLVEDVKHIESGRVPFPKYTSSSSSS 87
           LVEDVKHIE G VPFP Y+S++S++
Sbjct: 61 LLVEDVKHIEFGHVPFPNYSSTASAT 83

[Close]

BLAST of Pay0011897 vs. ExPASy TrEMBL
Match: A0A6J1G543 (transcription factor RADIALIS-like OS=Cucurbita moschata OX=3662 GN=LOC111450995 PE=4 SV=1)

HSP 1 Score: 131.7 bits (330), Expect = 1.9e-27
Identity = 72/87 (82.76%), Postives = 76/87 (87.36%), Query Frame = 0


Query: 1  MASISSSSHDSASSSWTPNQNKAFERALAVFDKDTPDRWLNVANAVGGGKTPDEVKRHFD 60
          MASI SSSHD  S+SW+PNQNKAFE ALAVFDKDTPDRWLNVA AV G KT DEVKRHF+
Sbjct: 1  MASI-SSSHD--STSWSPNQNKAFETALAVFDKDTPDRWLNVAKAV-GDKTVDEVKRHFE 60

Query: 61 RLVEDVKHIESGRVPFPKYTSSSSSSP 88
           LVEDVKHIESG VPFP YTSSSSS+P
Sbjct: 61 LLVEDVKHIESGLVPFPNYTSSSSSAP 83

[Close]

BLAST of Pay0011897 vs. NCBI nr
Match: XP_008460938.1 (PREDICTED: protein RADIALIS-like 2 [Cucumis melo])

HSP 1 Score: 173.3 bits (438), Expect = 1.2e-39
Identity = 87/89 (97.75%), Postives = 87/89 (97.75%), Query Frame = 0


Query: 1  MASISSSSHDSASSSWTPNQNKAFERALAVFDKDTPDRWLNVANAVGGGKTPDEVKRHFD 60
          MASISSSSHDSASSSWTPNQNKAFERALAVFDKDTPDRWLNVANAVGGGKTPDEVKRHFD
Sbjct: 1  MASISSSSHDSASSSWTPNQNKAFERALAVFDKDTPDRWLNVANAVGGGKTPDEVKRHFD 60

Query: 61 RLVEDVKHIESGRVPFPKYTSSSSSSPPP 90
          RLVEDVKHIESGRVPFPKYTSSSSSS  P
Sbjct: 61 RLVEDVKHIESGRVPFPKYTSSSSSSSAP 89

[Close]

BLAST of Pay0011897 vs. NCBI nr
Match: XP_004148844.1 (transcription factor RADIALIS [Cucumis sativus] >KGN61794.1 hypothetical protein Csa_006459 [Cucumis sativus])

HSP 1 Score: 154.5 bits (389), Expect = 5.6e-34
Identity = 79/85 (92.94%), Postives = 79/85 (92.94%), Query Frame = 0


Query: 1  MASISSSSHDSASSSWTPNQNKAFERALAVFDKDTPDRWLNVANAVGGGKTPDEVKRHFD 60
          MASISSS     SSSWTPNQNKAFERALAVFDKDTPDRWLNVA AVGGGKTPDEVKRHFD
Sbjct: 1  MASISSS-----SSSWTPNQNKAFERALAVFDKDTPDRWLNVAKAVGGGKTPDEVKRHFD 60

Query: 61 RLVEDVKHIESGRVPFPKYTSSSSS 86
          RLVEDVKHIESGRVPFPKYTSSSSS
Sbjct: 61 RLVEDVKHIESGRVPFPKYTSSSSS 80

[Close]

BLAST of Pay0011897 vs. NCBI nr
Match: XP_038902123.1 (protein RADIALIS-like 2 [Benincasa hispida])

HSP 1 Score: 145.6 bits (366), Expect = 2.6e-31
Identity = 75/84 (89.29%), Postives = 77/84 (91.67%), Query Frame = 0


Query: 1  MASISSSSHDSASSSWTPNQNKAFERALAVFDKDTPDRWLNVANAVGGGKTPDEVKRHFD 60
          MASI SSSHD  S SWTPNQNKAFERALAVFDKDTPDRWLNVANAVGGGKT DEVKRHFD
Sbjct: 1  MASI-SSSHD--SGSWTPNQNKAFERALAVFDKDTPDRWLNVANAVGGGKTADEVKRHFD 60

Query: 61 RLVEDVKHIESGRVPFPKYTSSSS 85
           LVEDVKHIESGRVPFP YTS+S+
Sbjct: 61 LLVEDVKHIESGRVPFPNYTSTST 81

[Close]

BLAST of Pay0011897 vs. NCBI nr
Match: XP_023513343.1 (protein RADIALIS-like 2 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 141.4 bits (355), Expect = 4.9e-30
Identity = 71/86 (82.56%), Postives = 76/86 (88.37%), Query Frame = 0


Query: 1  MASISSSSHDSASSSWTPNQNKAFERALAVFDKDTPDRWLNVANAVGGGKTPDEVKRHFD 60
          MAS+SSS H   SSSWTP QNKAFERALAVFDKDTPDRWLNVA AVGGGKTPDEVK HFD
Sbjct: 1  MASMSSSHH---SSSWTPKQNKAFERALAVFDKDTPDRWLNVAKAVGGGKTPDEVKTHFD 60

Query: 61 RLVEDVKHIESGRVPFPKYTSSSSSS 87
           LVEDVKHIESG VPFP Y+S++S+S
Sbjct: 61 LLVEDVKHIESGHVPFPNYSSTASAS 83

[Close]

BLAST of Pay0011897 vs. NCBI nr
Match: KAG6571113.1 (Transcription factor RADIALIS, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 141.0 bits (354), Expect = 6.4e-30
Identity = 71/86 (82.56%), Postives = 75/86 (87.21%), Query Frame = 0


Query: 1  MASISSSSHDSASSSWTPNQNKAFERALAVFDKDTPDRWLNVANAVGGGKTPDEVKRHFD 60
          MAS+SSS H   SSSWTP QNKAFERALAVFDKDTPDRWLNVA AVGGGKTPDEVK HFD
Sbjct: 1  MASMSSSHH---SSSWTPKQNKAFERALAVFDKDTPDRWLNVAKAVGGGKTPDEVKTHFD 60

Query: 61 RLVEDVKHIESGRVPFPKYTSSSSSS 87
           LVEDVKHIESG VPFP Y+S++S S
Sbjct: 61 LLVEDVKHIESGHVPFPNYSSTASDS 83

[Close]

BLAST of Pay0011897 vs. TAIR 10
Match: AT2G21650.1 (Homeodomain-like superfamily protein )

HSP 1 Score: 102.8 bits (255), Expect = 1.8e-22
Identity = 54/86 (62.79%), Postives = 66/86 (76.74%), Query Frame = 0


Query: 1  MASISSSSHDSASSSWTPNQNKAFERALAVFDKDTPDRWLNVANAVGGGKTPDEVKRHFD 60
          MAS S SS+   S SWT  QNKAFERALAV+D+DTPDRW NVA AV GGKTP+E KR +D
Sbjct: 1  MASGSMSSY--GSGSWTVKQNKAFERALAVYDQDTPDRWHNVARAV-GGKTPEEAKRQYD 60

Query: 61 RLVEDVKHIESGRVPFPKYTSSSSSS 87
           LV D++ IE+G VPFP Y +++ +S
Sbjct: 61 LLVRDIESIENGHVPFPDYKTTTGNS 83

[Close]

BLAST of Pay0011897 vs. TAIR 10
Match: AT1G75250.1 (RAD-like 6 )

HSP 1 Score: 100.5 bits (249), Expect = 8.9e-22
Identity = 52/81 (64.20%), Postives = 64/81 (79.01%), Query Frame = 0


Query: 6  SSSHDSASSSWTPNQNKAFERALAVFDKDTPDRWLNVANAVGGGKTPDEVKRHFDRLVED 65
          +S+  S+ S WT +QNK FERALAV+DKDTPDRW NVA AV GGKT +EVKRH+D LVED
Sbjct: 2  ASNSRSSISPWTFSQNKMFERALAVYDKDTPDRWHNVAKAV-GGKTVEEVKRHYDILVED 61

Query: 66 VKHIESGRVPFPKYTSSSSSS 87
          + +IE+GRVP P Y +  S+S
Sbjct: 62 LINIETGRVPLPNYKTFESNS 81

[Close]

BLAST of Pay0011897 vs. TAIR 10
Match: AT1G75250.2 (RAD-like 6 )

HSP 1 Score: 100.5 bits (249), Expect = 8.9e-22
Identity = 52/81 (64.20%), Postives = 64/81 (79.01%), Query Frame = 0


Query: 6  SSSHDSASSSWTPNQNKAFERALAVFDKDTPDRWLNVANAVGGGKTPDEVKRHFDRLVED 65
          +S+  S+ S WT +QNK FERALAV+DKDTPDRW NVA AV GGKT +EVKRH+D LVED
Sbjct: 2  ASNSRSSISPWTFSQNKMFERALAVYDKDTPDRWHNVAKAV-GGKTVEEVKRHYDILVED 61

Query: 66 VKHIESGRVPFPKYTSSSSSS 87
          + +IE+GRVP P Y +  S+S
Sbjct: 62 LINIETGRVPLPNYKTFESNS 81

[Close]

BLAST of Pay0011897 vs. TAIR 10
Match: AT1G19510.1 (RAD-like 5 )

HSP 1 Score: 98.2 bits (243), Expect = 4.4e-21
Identity = 50/74 (67.57%), Postives = 58/74 (78.38%), Query Frame = 0


Query: 6  SSSHDSASSSWTPNQNKAFERALAVFDKDTPDRWLNVANAVGGGKTPDEVKRHFDRLVED 65
          +SS  S+SSSWT  QNK FERALAV+DKDTPDRW NVA AV G K+ +EVKRH+D LVED
Sbjct: 2  ASSSMSSSSSWTSKQNKMFERALAVYDKDTPDRWQNVAKAV-GSKSAEEVKRHYDILVED 61

Query: 66 VKHIESGRVPFPKY 80
          + +IE   VP PKY
Sbjct: 62 LMNIEQDLVPLPKY 74

[Close]

BLAST of Pay0011897 vs. TAIR 10
Match: AT4G39250.1 (RAD-like 1 )

HSP 1 Score: 97.8 bits (242), Expect = 5.8e-21
Identity = 47/78 (60.26%), Postives = 59/78 (75.64%), Query Frame = 0


Query: 5  SSSSHDSASSSWTPNQNKAFERALAVFDKDTPDRWLNVANAVGGGKTPDEVKRHFDRLVE 64
          SSS    +S SWT  QNKAFE+ALA +D+DTP+RW NVA  V GGKT +EVKRH++ LV+
Sbjct: 3  SSSMSSQSSGSWTAKQNKAFEQALATYDQDTPNRWQNVAKVV-GGKTTEEVKRHYELLVQ 62

Query: 65 DVKHIESGRVPFPKYTSS 83
          D+  IE+G VPFP Y +S
Sbjct: 63 DINSIENGHVPFPNYRTS 79

The following BLAST results are available for this feature:

BLAST of Pay0011897 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9SIJ5	2.5e-21	62.79	Protein RADIALIS-like 2 OS=Arabidopsis thaliana OX=3702 GN=RL2 PE=2 SV=1	[more]
Q58FS3	5.6e-21	64.29	Transcription factor RADIALIS OS=Antirrhinum majus OX=4151 GN=RAD PE=1 SV=1	[more]
Q1A173	1.3e-20	64.20	Protein RADIALIS-like 6 OS=Arabidopsis thaliana OX=3702 GN=RL6 PE=2 SV=1	[more]
Q8GW75	6.2e-20	67.57	Protein RADIALIS-like 5 OS=Arabidopsis thaliana OX=3702 GN=RL5 PE=3 SV=1	[more]
F4JVB8	8.1e-20	60.26	Protein RADIALIS-like 1 OS=Arabidopsis thaliana OX=3702 GN=RL1 PE=2 SV=1	[more]

BLAST of Pay0011897 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S3CDK8	5.6e-40	97.75	protein RADIALIS-like 2 OS=Cucumis melo OX=3656 GN=LOC103499673 PE=4 SV=1	[more]
A0A0A0LL58	2.7e-34	92.94	MYB transcription factor MYB142 OS=Cucumis sativus OX=3659 GN=Csa_2G247060 PE=4 ...	[more]
A0A6J1FXX9	4.5e-29	80.23	protein RADIALIS-like 2 OS=Cucurbita moschata OX=3662 GN=LOC111448798 PE=4 SV=1	[more]
A0A6J1JBS7	5.8e-29	79.07	protein RADIALIS-like 2 OS=Cucurbita maxima OX=3661 GN=LOC111484324 PE=4 SV=1	[more]
A0A6J1G543	1.9e-27	82.76	transcription factor RADIALIS-like OS=Cucurbita moschata OX=3662 GN=LOC111450995...	[more]

BLAST of Pay0011897 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008460938.1	1.2e-39	97.75	PREDICTED: protein RADIALIS-like 2 [Cucumis melo]	[more]
XP_004148844.1	5.6e-34	92.94	transcription factor RADIALIS [Cucumis sativus] >KGN61794.1 hypothetical protein...	[more]
XP_038902123.1	2.6e-31	89.29	protein RADIALIS-like 2 [Benincasa hispida]	[more]
XP_023513343.1	4.9e-30	82.56	protein RADIALIS-like 2 [Cucurbita pepo subsp. pepo]	[more]
KAG6571113.1	6.4e-30	82.56	Transcription factor RADIALIS, partial [Cucurbita argyrosperma subsp. sororia]	[more]

BLAST of Pay0011897 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G21650.1	1.8e-22	62.79	Homeodomain-like superfamily protein	[more]
AT1G75250.1	8.9e-22	64.20	RAD-like 6	[more]
AT1G75250.2	8.9e-22	64.20	RAD-like 6	[more]
AT1G19510.1	4.4e-21	67.57	RAD-like 5	[more]
AT4G39250.1	5.8e-21	60.26	RAD-like 1	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (Payzawat) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001005	SANT/Myb domain	SMART	SM00717	sant	coord: 12..65 e-value: 4.6E-4 score: 29.5
IPR001005	SANT/Myb domain	PROSITE	PS50090	MYB_LIKE	coord: 8..63 score: 6.086305
None	No IPR available	GENE3D	1.10.10.60		coord: 6..76 e-value: 4.8E-22 score: 79.5
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 73..112
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 82..96
None	No IPR available	PANTHER	PTHR43952:SF53	TRANSCRIPTION FACTOR MYB/SANT FAMILY-RELATED	coord: 6..84
IPR044636	Transcription factor RADIALIS-like	PANTHER	PTHR43952	MYB FAMILY TRANSCRIPTION FACTOR-RELATED	coord: 6..84
IPR009057	Homeobox-like domain superfamily	SUPERFAMILY	46689	Homeodomain-like	coord: 14..71

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Pay0011897.1	Pay0011897.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006355	regulation of transcription, DNA-templated
molecular_function	GO:0003700	DNA-binding transcription factor activity