Pay0011873 (gene) Melon (Payzawat) v1

Overview


Name	Pay0011873
Type	gene
Organism	Cucumis melo L. var. inodorus cv. Payzawat (Melon (Payzawat) v1)
Description	Ty1-copia retrotransposon protein
Location	chr01: 16119015 .. 16119428 (-)
RNA-Seq Expression	Pay0011873
Synteny	Pay0011873

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAGATGTGCGAAATACTTCAAGCAAATGTCCTGTTGGAAAAATTTCCTCCATCCTGGAATGACTACCGTAATCATCTCAAGCACAAGAAGAAGGATCTAAAGCTCCAGGAACTCATCAGTCATATGCGCACGGAAGAAGCCAACAGACTGAAAGATAAGTTAGCCTCCCAAAATTTAAATTCAGTTAATGCTAACTTAGTCGAATCATCCTTTGTGAACAGAGACAGAACGAAGCAGGAAAAAGGACATAAAGGGAAAAACTCAGAGAAGAGACAATTCAAGACTACTGGGGACAAATTAAGAAGAAAAAGCTGGTCTGCTACGTGTGCGGAAAGGAAGGGCACAAATCATACCAGTGCAACCAGAGGAAAGGGAGGCCAAGTCAGAAACCAACACCTCAAGCCAATCTAG

mRNA sequence

ATGAAGATGTGCGAAATACTTCAAGCAAATGTCCTGTTGGAAAAATTTCCTCCATCCTGGAATGACTACCGTAATCATCTCAAGCACAAGAAGAAGGATCTAAAGCTCCAGGAACTCATCAGTCATATGCGCACGGAAGAAGCCAACAGACTGAAAGATAAGTTAGCCTCCCAAAATTTAAATTCAGTTAATGCTAACTTAGTCGAATCATCCTTTGTGAACAGAGACAGAACGAAGCAGGAAAAAGGACATAAAGGGAAAAACTCAGAGAAGAGACAATTCAAGACTACTGGGGACAAATTAAGAAGAAAAAGCTGGTCTGCTACGTGTGCGGAAAGGAAGGGCACAAATCATACCAGTGCAACCAGAGGAAAGGGAGGCCAAGTCAGAAACCAACACCTCAAGCCAATCTAG

Coding sequence (CDS)

ATGAAGATGTGCGAAATACTTCAAGCAAATGTCCTGTTGGAAAAATTTCCTCCATCCTGGAATGACTACCGTAATCATCTCAAGCACAAGAAGAAGGATCTAAAGCTCCAGGAACTCATCAGTCATATGCGCACGGAAGAAGCCAACAGACTGAAAGATAAGTTAGCCTCCCAAAATTTAAATTCAGTTAATGCTAACTTAGTCGAATCATCCTTTGTGAACAGAGACAGAACGAAGCAGGAAAAAGGACATAAAGGGAAAAACTCAGAGAAGAGACAATTCAAGACTACTGGGGACAAATTAAGAAGAAAAAGCTGGTCTGCTACGTGTGCGGAAAGGAAGGGCACAAATCATACCAGTGCAACCAGAGGAAAGGGAGGCCAAGTCAGAAACCAACACCTCAAGCCAATCTAG

Protein sequence

MKMCEILQANVLLEKFPPSWNDYRNHLKHKKKDLKLQELISHMRTEEANRLKDKLASQNLNSVNANLVESSFVNRDRTKQEKGHKGKNSEKRQFKTTGDKLRRKSWSATCAERKGTNHTSATRGKGGQVRNQHLKPI

Homology

[Close]

BLAST of Pay0011873 vs. ExPASy TrEMBL
Match: A0A1S4E2X9 (uncharacterized protein LOC107991742 OS=Cucumis melo OX=3656 GN=LOC107991742 PE=4 SV=1)

HSP 1 Score: 241.9 bits (616), Expect = 1.6e-60
Identity = 126/137 (91.97%), Postives = 129/137 (94.16%), Query Frame = 0


Query: 1   MKMCEILQANVLLEKFPPSWNDYRNHLKHKKKDLKLQELISHMRTEEANRLKDKLASQNL 60
           MKMCEILQANVLLEKFPPSWNDYRNHLKHKKKDLKLQELISHMRTEEANRLKDKLASQNL
Sbjct: 134 MKMCEILQANVLLEKFPPSWNDYRNHLKHKKKDLKLQELISHMRTEEANRLKDKLASQNL 193

Query: 61  NSVNANLVESSFVNRDRTKQEKGHKGKNSEKRQFKTTGDKLRRKSWSATCAERKGTNHTS 120
           NS+NANLVESSFVNRDRTKQ+KGHKGKNSEKRQFKTT DKLRRKS S T AE K TNHT+
Sbjct: 194 NSINANLVESSFVNRDRTKQKKGHKGKNSEKRQFKTTRDKLRRKSRSVTYAEMKDTNHTN 253

Query: 121 ATRGKGGQVRNQHLKPI 138
           ATRGKG QVRNQHLK I
Sbjct: 254 ATRGKGDQVRNQHLKSI 270

[Close]

BLAST of Pay0011873 vs. ExPASy TrEMBL
Match: A0A5A7TAR9 (Ty1-copia retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold262G001180 PE=4 SV=1)

HSP 1 Score: 196.1 bits (497), Expect = 9.9e-47
Identity = 102/126 (80.95%), Postives = 109/126 (86.51%), Query Frame = 0


Query: 1   MKMCEILQANVLLEKFPPSWNDYRNHLKHKKKDLKLQELISHMRTEEANRLKDKLASQNL 60
           MKMCEILQANVLLEKFPPSWNDYRNHLKHKKKDLKLQELISHMRTEEANRLKDKLASQNL
Sbjct: 176 MKMCEILQANVLLEKFPPSWNDYRNHLKHKKKDLKLQELISHMRTEEANRLKDKLASQNL 235

Query: 61  NSVNANLVESSFVNRDRTKQEKGHKGKNSEKRQFKTTGDKLRRKSWSATCAERKGTNHTS 120
           NSVNANLVESSFVNRDRTKQEKGHKGKNSEKRQFKTTG ++++K        ++G     
Sbjct: 236 NSVNANLVESSFVNRDRTKQEKGHKGKNSEKRQFKTTGGQIKKKKLVCYVCRKEGHKSYQ 295

Query: 121 ATRGKG 127
             + KG
Sbjct: 296 CNQRKG 301

[Close]

BLAST of Pay0011873 vs. ExPASy TrEMBL
Match: A0A5D3DSQ3 (Ty1-copia retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold124G00930 PE=4 SV=1)

HSP 1 Score: 195.3 bits (495), Expect = 1.7e-46
Identity = 102/126 (80.95%), Postives = 109/126 (86.51%), Query Frame = 0


Query: 1   MKMCEILQANVLLEKFPPSWNDYRNHLKHKKKDLKLQELISHMRTEEANRLKDKLASQNL 60
           MKMCEILQANVLLEKFPPSWNDYRNHLKHKKKDLKLQELISHMRTEEANRLKDKLASQNL
Sbjct: 175 MKMCEILQANVLLEKFPPSWNDYRNHLKHKKKDLKLQELISHMRTEEANRLKDKLASQNL 234

Query: 61  NSVNANLVESSFVNRDRTKQEKGHKGKNSEKRQFKTTGDKLRRKSWSATCAERKGTNHTS 120
           NSVNANLVESSFVNRDRTKQEKGHKGKNSEKRQFKTTG ++++K        ++G     
Sbjct: 235 NSVNANLVESSFVNRDRTKQEKGHKGKNSEKRQFKTTGGQIKKKKLVCYVCGKEGHKSYQ 294

Query: 121 ATRGKG 127
             + KG
Sbjct: 295 CNQRKG 300

[Close]

BLAST of Pay0011873 vs. ExPASy TrEMBL
Match: A0A5D3DJ22 (Ty1-copia retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold500G001050 PE=4 SV=1)

HSP 1 Score: 195.3 bits (495), Expect = 1.7e-46
Identity = 102/126 (80.95%), Postives = 109/126 (86.51%), Query Frame = 0


Query: 1   MKMCEILQANVLLEKFPPSWNDYRNHLKHKKKDLKLQELISHMRTEEANRLKDKLASQNL 60
           MKMCEILQANVLLEKFPPSWNDYRNHLKHKKKDLKLQELISHMRTEEANRLKDKLASQNL
Sbjct: 175 MKMCEILQANVLLEKFPPSWNDYRNHLKHKKKDLKLQELISHMRTEEANRLKDKLASQNL 234

Query: 61  NSVNANLVESSFVNRDRTKQEKGHKGKNSEKRQFKTTGDKLRRKSWSATCAERKGTNHTS 120
           NSVNANLVESSFVNRDRTKQEKGHKGKNSEKRQFKTTG ++++K        ++G     
Sbjct: 235 NSVNANLVESSFVNRDRTKQEKGHKGKNSEKRQFKTTGGQIKKKKLVCYVCGKEGHQSYQ 294

Query: 121 ATRGKG 127
             + KG
Sbjct: 295 CNQRKG 300

[Close]

BLAST of Pay0011873 vs. ExPASy TrEMBL
Match: A0A5D3CLR6 (Ty1-copia retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold106G00480 PE=4 SV=1)

HSP 1 Score: 195.3 bits (495), Expect = 1.7e-46
Identity = 102/126 (80.95%), Postives = 109/126 (86.51%), Query Frame = 0


Query: 1   MKMCEILQANVLLEKFPPSWNDYRNHLKHKKKDLKLQELISHMRTEEANRLKDKLASQNL 60
           MKMCEILQANVLLEKFPPSWNDYRNHLKHKKKDLKLQELISHMRTEEANRLKDKLASQNL
Sbjct: 26  MKMCEILQANVLLEKFPPSWNDYRNHLKHKKKDLKLQELISHMRTEEANRLKDKLASQNL 85

Query: 61  NSVNANLVESSFVNRDRTKQEKGHKGKNSEKRQFKTTGDKLRRKSWSATCAERKGTNHTS 120
           NSVNANLVESSFVNRDRTKQEKGHKGKNSEKRQFKTTG ++++K        ++G     
Sbjct: 86  NSVNANLVESSFVNRDRTKQEKGHKGKNSEKRQFKTTGGQIKKKKLVCYVCGKEGHKSYQ 145

Query: 121 ATRGKG 127
             + KG
Sbjct: 146 CNQRKG 151

[Close]

BLAST of Pay0011873 vs. NCBI nr
Match: XP_016902586.1 (PREDICTED: uncharacterized protein LOC107991742 [Cucumis melo])

HSP 1 Score: 241.9 bits (616), Expect = 3.2e-60
Identity = 126/137 (91.97%), Postives = 129/137 (94.16%), Query Frame = 0


Query: 1   MKMCEILQANVLLEKFPPSWNDYRNHLKHKKKDLKLQELISHMRTEEANRLKDKLASQNL 60
           MKMCEILQANVLLEKFPPSWNDYRNHLKHKKKDLKLQELISHMRTEEANRLKDKLASQNL
Sbjct: 134 MKMCEILQANVLLEKFPPSWNDYRNHLKHKKKDLKLQELISHMRTEEANRLKDKLASQNL 193

Query: 61  NSVNANLVESSFVNRDRTKQEKGHKGKNSEKRQFKTTGDKLRRKSWSATCAERKGTNHTS 120
           NS+NANLVESSFVNRDRTKQ+KGHKGKNSEKRQFKTT DKLRRKS S T AE K TNHT+
Sbjct: 194 NSINANLVESSFVNRDRTKQKKGHKGKNSEKRQFKTTRDKLRRKSRSVTYAEMKDTNHTN 253

Query: 121 ATRGKGGQVRNQHLKPI 138
           ATRGKG QVRNQHLK I
Sbjct: 254 ATRGKGDQVRNQHLKSI 270

[Close]

BLAST of Pay0011873 vs. NCBI nr
Match: KAA0040554.1 (ty1-copia retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 196.1 bits (497), Expect = 2.0e-46
Identity = 102/126 (80.95%), Postives = 109/126 (86.51%), Query Frame = 0


Query: 1   MKMCEILQANVLLEKFPPSWNDYRNHLKHKKKDLKLQELISHMRTEEANRLKDKLASQNL 60
           MKMCEILQANVLLEKFPPSWNDYRNHLKHKKKDLKLQELISHMRTEEANRLKDKLASQNL
Sbjct: 176 MKMCEILQANVLLEKFPPSWNDYRNHLKHKKKDLKLQELISHMRTEEANRLKDKLASQNL 235

Query: 61  NSVNANLVESSFVNRDRTKQEKGHKGKNSEKRQFKTTGDKLRRKSWSATCAERKGTNHTS 120
           NSVNANLVESSFVNRDRTKQEKGHKGKNSEKRQFKTTG ++++K        ++G     
Sbjct: 236 NSVNANLVESSFVNRDRTKQEKGHKGKNSEKRQFKTTGGQIKKKKLVCYVCRKEGHKSYQ 295

Query: 121 ATRGKG 127
             + KG
Sbjct: 296 CNQRKG 301

[Close]

BLAST of Pay0011873 vs. NCBI nr
Match: TYK04394.1 (ty1-copia retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 195.3 bits (495), Expect = 3.5e-46
Identity = 102/126 (80.95%), Postives = 109/126 (86.51%), Query Frame = 0


Query: 1   MKMCEILQANVLLEKFPPSWNDYRNHLKHKKKDLKLQELISHMRTEEANRLKDKLASQNL 60
           MKMCEILQANVLLEKFPPSWNDYRNHLKHKKKDLKLQELISHMRTEEANRLKDKLASQNL
Sbjct: 175 MKMCEILQANVLLEKFPPSWNDYRNHLKHKKKDLKLQELISHMRTEEANRLKDKLASQNL 234

Query: 61  NSVNANLVESSFVNRDRTKQEKGHKGKNSEKRQFKTTGDKLRRKSWSATCAERKGTNHTS 120
           NSVNANLVESSFVNRDRTKQEKGHKGKNSEKRQFKTTG ++++K        ++G     
Sbjct: 235 NSVNANLVESSFVNRDRTKQEKGHKGKNSEKRQFKTTGGQIKKKKLVCYVCGKEGHKSYQ 294

Query: 121 ATRGKG 127
             + KG
Sbjct: 295 CNQRKG 300

[Close]

BLAST of Pay0011873 vs. NCBI nr
Match: KAA0051006.1 (ty1-copia retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 195.3 bits (495), Expect = 3.5e-46
Identity = 102/126 (80.95%), Postives = 109/126 (86.51%), Query Frame = 0


Query: 1   MKMCEILQANVLLEKFPPSWNDYRNHLKHKKKDLKLQELISHMRTEEANRLKDKLASQNL 60
           MKMCEILQANVLLEKFPPSWNDYRNHLKHKKKDLKLQELISHMRTEEANRLKDKLASQNL
Sbjct: 175 MKMCEILQANVLLEKFPPSWNDYRNHLKHKKKDLKLQELISHMRTEEANRLKDKLASQNL 234

Query: 61  NSVNANLVESSFVNRDRTKQEKGHKGKNSEKRQFKTTGDKLRRKSWSATCAERKGTNHTS 120
           NSVNANLVESSFVNRDRTKQEKGHKGKNSEKRQFKTTG ++++K        ++G     
Sbjct: 235 NSVNANLVESSFVNRDRTKQEKGHKGKNSEKRQFKTTGGQIKKKKLVCYVCGKEGHKSYQ 294

Query: 121 ATRGKG 127
             + KG
Sbjct: 295 CNQRKG 300

[Close]

BLAST of Pay0011873 vs. NCBI nr
Match: TYK26791.1 (ty1-copia retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 195.3 bits (495), Expect = 3.5e-46
Identity = 102/126 (80.95%), Postives = 109/126 (86.51%), Query Frame = 0


Query: 1   MKMCEILQANVLLEKFPPSWNDYRNHLKHKKKDLKLQELISHMRTEEANRLKDKLASQNL 60
           MKMCEILQANVLLEKFPPSWNDYRNHLKHKKKDLKLQELISHMRTEEANRLKDKLASQNL
Sbjct: 175 MKMCEILQANVLLEKFPPSWNDYRNHLKHKKKDLKLQELISHMRTEEANRLKDKLASQNL 234

Query: 61  NSVNANLVESSFVNRDRTKQEKGHKGKNSEKRQFKTTGDKLRRKSWSATCAERKGTNHTS 120
           NSVNANLVESSFVNRDRTKQEKGHKGKNSEKRQFKTTG ++++K        ++G     
Sbjct: 235 NSVNANLVESSFVNRDRTKQEKGHKGKNSEKRQFKTTGGQIKKKKLVCYVCGKEGHKSYQ 294

Query: 121 ATRGKG 127
             + KG
Sbjct: 295 CNQRKG 300

The following BLAST results are available for this feature:

BLAST of Pay0011873 vs.


Match Name	E-value	Identity	Description

BLAST of Pay0011873 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S4E2X9	1.6e-60	91.97	uncharacterized protein LOC107991742 OS=Cucumis melo OX=3656 GN=LOC107991742 PE=...	[more]
A0A5A7TAR9	9.9e-47	80.95	Ty1-copia retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C2...	[more]
A0A5D3DSQ3	1.7e-46	80.95	Ty1-copia retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E567...	[more]
A0A5D3DJ22	1.7e-46	80.95	Ty1-copia retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E567...	[more]
A0A5D3CLR6	1.7e-46	80.95	Ty1-copia retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E567...	[more]

BLAST of Pay0011873 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_016902586.1	3.2e-60	91.97	PREDICTED: uncharacterized protein LOC107991742 [Cucumis melo]	[more]
KAA0040554.1	2.0e-46	80.95	ty1-copia retrotransposon protein [Cucumis melo var. makuwa]	[more]
TYK04394.1	3.5e-46	80.95	ty1-copia retrotransposon protein [Cucumis melo var. makuwa]	[more]
KAA0051006.1	3.5e-46	80.95	ty1-copia retrotransposon protein [Cucumis melo var. makuwa]	[more]
TYK26791.1	3.5e-46	80.95	ty1-copia retrotransposon protein [Cucumis melo var. makuwa]	[more]

BLAST of Pay0011873 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (Payzawat) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 71..137
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 110..127
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 74..109
None	No IPR available	PANTHER	PTHR47592	PBF68 PROTEIN	coord: 1..93
None	No IPR available	PANTHER	PTHR47592:SF14	GAG-POL POLYPROTEIN-LIKE PROTEIN	coord: 1..93

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Pay0011873.1	Pay0011873.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015074	DNA integration
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0008270	zinc ion binding