Pay0011678 (gene) Melon (Payzawat) v1

Overview


Name	Pay0011678
Type	gene
Organism	Cucumis melo L. var. inodorus cv. Payzawat (Melon (Payzawat) v1)
Description	Reverse transcriptase
Location	chr06: 27751702 .. 27752721 (-)
RNA-Seq Expression	Pay0011678
Synteny	Pay0011678

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexonpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCCGAGAAAGACAAAGTTTTCTGTTTTGTCGAAGGATTGAAGCCGTGGGCAAAGACAAAGCTATATGAACAAAGAGTTCAAGACCTCACATCAGCGTACGCTGTGGCCGAGCGACTGTTTGATCTATTTAACGACTCTCAGGATGCGAGACGTCACCCAAGTTCCTCATCTGGGGGAAATAGGAACGACCGCCCAAGTTCTCCCAAAACTACGGGACGGGATAAACGCTTTAATGGAGATCGTAGGCCCCATCAATCGAATACTGGAAACTCCTGGCGAGGATCAAGTAACCAGAATGTGTCCAATCGTCCTCTCAGTTGTTTCATATGTAAGGGACCACACTTGGCCAGGGAATGCCCGAACAAAACTGCTTTCAATGTATTTCAGGCATCTTTAGCCTCAGATTCAGACAACCGACTAAGTCAAACCGAGAGGGAAGTAGACCAGACAGAAGAAGTTGATAACGCTCGAATTGGGACCTTGAAATTTTTTTCCTCTCTCCAGAAGAAGGTGGGGGAGACGAACACACCAGTGGAAAGGGGCCTAATGTACGTTGACACCTGGATCAACCAGAAGCCAACCAAAAGTACTATGGTTAATTCCCATGCCACCCACAATTTCATAACGGAAGTTGAAGCTAAGCGTTTGAATCTTCGTTGGGAGAAGGATGCAGGAGGAATGAAAGCCGTGAATTCTGATGTCCTACCTATCATCGGACTAGTGAAACAAACGATGATAAGGTTGGGAGGATGGAGTGGCCTTGTGGACTTTGTAGTAGTAAAAGTGGATGACTTTGATGTGGTACTGGGAATAGAGTTCCTACTCGAACATCAGGTAATCCCAATGCCTTTGGCCAAATGCTTGGTGATCACTGGATCTACCCCCTCTGTTGTACATACTGACCTACGCCAGCCAGATGGGTTGAAAATGATTTCGGCCATGCAATTAAAGAAGTTTCTCTCTCGAGACGAACCAACGTCTCAATTCGTCAGAGAACTCAGGGGAGACAGTCCCTAG

mRNA sequence

ATGTCCGAGAAAGACAAAGTTTTCTGTTTTGTCGAAGGATTGAAGCCGTGGGCAAAGACAAAGCTATATGAACAAAGAGTTCAAGACCTCACATCAGCGTACGCTGTGGCCGAGCGACTGTTTGATCTATTTAACGACTCTCAGGATGCGAGACGTCACCCAAGTTCCTCATCTGGGGGAAATAGGAACGACCGCCCAAGTTCTCCCAAAACTACGGGACGGGATAAACGCTTTAATGGAGATCGTAGGCCCCATCAATCGAATACTGGAAACTCCTGGCGAGGATCAAGTAACCAGAATGTGTCCAATCGTCCTCTCAGTTGTTTCATATGTAAGGGACCACACTTGGCCAGGGAATGCCCGAACAAAACTGCTTTCAATGTATTTCAGGCATCTTTAGCCTCAGATTCAGACAACCGACTAAGTCAAACCGAGAGGGAAGTAGACCAGACAGAAGAAGTTGATAACGCTCGAATTGGGACCTTGAAATTTTTTTCCTCTCTCCAGAAGAAGGTGGGGGAGACGAACACACCAGTGGAAAGGGGCCTAATGTACGTTGACACCTGGATCAACCAGAAGCCAACCAAAAGTACTATGGTTAATTCCCATGCCACCCACAATTTCATAACGGAAGTTGAAGCTAAGCGTTTGAATCTTCGTTGGGAGAAGGATGCAGGAGGAATGAAAGCCGTGAATTCTGATGTCCTACCTATCATCGGACTAGTGAAACAAACGATGATAAGGTTGGGAGGATGGAGTGGCCTTGTGGACTTTGTAGTAGTAAAAGTGGATGACTTTGATGTGGTACTGGGAATAGAGTTCCTACTCGAACATCAGGTAATCCCAATGCCTTTGGCCAAATGCTTGGTGATCACTGGATCTACCCCCTCTGTTGTACATACTGACCTACGCCAGCCAGATGGGTTGAAAATGATTTCGGCCATGCAATTAAAGAAGTTTCTCTCTCGAGACGAACCAACGTCTCAATTCGTCAGAGAACTCAGGGGAGACAGTCCCTAG

Coding sequence (CDS)

ATGTCCGAGAAAGACAAAGTTTTCTGTTTTGTCGAAGGATTGAAGCCGTGGGCAAAGACAAAGCTATATGAACAAAGAGTTCAAGACCTCACATCAGCGTACGCTGTGGCCGAGCGACTGTTTGATCTATTTAACGACTCTCAGGATGCGAGACGTCACCCAAGTTCCTCATCTGGGGGAAATAGGAACGACCGCCCAAGTTCTCCCAAAACTACGGGACGGGATAAACGCTTTAATGGAGATCGTAGGCCCCATCAATCGAATACTGGAAACTCCTGGCGAGGATCAAGTAACCAGAATGTGTCCAATCGTCCTCTCAGTTGTTTCATATGTAAGGGACCACACTTGGCCAGGGAATGCCCGAACAAAACTGCTTTCAATGTATTTCAGGCATCTTTAGCCTCAGATTCAGACAACCGACTAAGTCAAACCGAGAGGGAAGTAGACCAGACAGAAGAAGTTGATAACGCTCGAATTGGGACCTTGAAATTTTTTTCCTCTCTCCAGAAGAAGGTGGGGGAGACGAACACACCAGTGGAAAGGGGCCTAATGTACGTTGACACCTGGATCAACCAGAAGCCAACCAAAAGTACTATGGTTAATTCCCATGCCACCCACAATTTCATAACGGAAGTTGAAGCTAAGCGTTTGAATCTTCGTTGGGAGAAGGATGCAGGAGGAATGAAAGCCGTGAATTCTGATGTCCTACCTATCATCGGACTAGTGAAACAAACGATGATAAGGTTGGGAGGATGGAGTGGCCTTGTGGACTTTGTAGTAGTAAAAGTGGATGACTTTGATGTGGTACTGGGAATAGAGTTCCTACTCGAACATCAGGTAATCCCAATGCCTTTGGCCAAATGCTTGGTGATCACTGGATCTACCCCCTCTGTTGTACATACTGACCTACGCCAGCCAGATGGGTTGAAAATGATTTCGGCCATGCAATTAAAGAAGTTTCTCTCTCGAGACGAACCAACGTCTCAATTCGTCAGAGAACTCAGGGGAGACAGTCCCTAG

Protein sequence

MSEKDKVFCFVEGLKPWAKTKLYEQRVQDLTSAYAVAERLFDLFNDSQDARRHPSSSSGGNRNDRPSSPKTTGRDKRFNGDRRPHQSNTGNSWRGSSNQNVSNRPLSCFICKGPHLARECPNKTAFNVFQASLASDSDNRLSQTEREVDQTEEVDNARIGTLKFFSSLQKKVGETNTPVERGLMYVDTWINQKPTKSTMVNSHATHNFITEVEAKRLNLRWEKDAGGMKAVNSDVLPIIGLVKQTMIRLGGWSGLVDFVVVKVDDFDVVLGIEFLLEHQVIPMPLAKCLVITGSTPSVVHTDLRQPDGLKMISAMQLKKFLSRDEPTSQFVRELRGDSP

Homology

[Close]

BLAST of Pay0011678 vs. ExPASy TrEMBL
Match: A0A5D3DQ20 (Retrotrans_gag domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold352G007440 PE=4 SV=1)

HSP 1 Score: 592.4 bits (1526), Expect = 1.2e-165
Identity = 298/327 (91.13%), Postives = 309/327 (94.50%), Query Frame = 0


Query: 1   MSEKDKVFCFVEGLKPWAKTKLYEQRVQDLTSAYAVAERLFDLFNDSQDARRHPSSSSGG 60
           MSEKDKVFCFVEGLKPWAKTKLYEQRVQDLTSAYA AERLFDL NDSQD RRHPSSSSGG
Sbjct: 283 MSEKDKVFCFVEGLKPWAKTKLYEQRVQDLTSAYAAAERLFDLSNDSQDTRRHPSSSSGG 342

Query: 61  NRNDRPSSPKTTGRDKRFNGDRRPHQSNTGNSWRGSSNQNVSNRPLSCFICKGPHLAREC 120
           +RN+RPSSPKTTG D+RFNGDRR HQSNTGNSWRGSSNQN+SNRPLSCFICKGPH+AREC
Sbjct: 343 SRNNRPSSPKTTGGDRRFNGDRRSHQSNTGNSWRGSSNQNLSNRPLSCFICKGPHMAREC 402

Query: 121 PNKTAFNVFQASLASDSDNRLSQTEREVDQTEEVDNARIGTLKFFSSLQKKVGETNTPVE 180
           PNKTAFN FQASLASDSDN+ SQTEREVDQTEEVDN R+G LKF SSLQKKVGETNTPVE
Sbjct: 403 PNKTAFNAFQASLASDSDNQQSQTEREVDQTEEVDNPRMGALKFLSSLQKKVGETNTPVE 462

Query: 181 RGLMYVDTWINQKPTKSTMVNSHATHNFITEVEAKRLNLRWEKDAGGMKAVNSDVLPIIG 240
           RGLMYVDTWINQKPTKSTMV+S ATHNFITEVEAKRLNLRWEKDAG MKAVNS  LPIIG
Sbjct: 463 RGLMYVDTWINQKPTKSTMVDSGATHNFITEVEAKRLNLRWEKDAGRMKAVNSAALPIIG 522

Query: 241 LVKQTMIRLGGWSGLVDFVVVKVDDFDVVLGIEFLLEHQVIPMPLAKCLVITGSTPSVVH 300
           LVK+TMIRLGGWSGLVDFVVVK+DDFDVVLG+EFLLEHQVIPMPLAKCLVITG TPSVV 
Sbjct: 523 LVKRTMIRLGGWSGLVDFVVVKMDDFDVVLGMEFLLEHQVIPMPLAKCLVITGPTPSVVQ 582

Query: 301 TDLRQPDGLKMISAMQLKKFLSRDEPT 328
           TDLRQPDGLKMISAMQLKK L RDEPT
Sbjct: 583 TDLRQPDGLKMISAMQLKKGLFRDEPT 609

[Close]

BLAST of Pay0011678 vs. ExPASy TrEMBL
Match: A0A5D3C9P8 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold265G00750 PE=4 SV=1)

HSP 1 Score: 588.6 bits (1516), Expect = 1.7e-164
Identity = 295/327 (90.21%), Postives = 307/327 (93.88%), Query Frame = 0


Query: 1   MSEKDKVFCFVEGLKPWAKTKLYEQRVQDLTSAYAVAERLFDLFNDSQDARRHPSSSSGG 60
           MSEKDKVFCFVEGLKPWAKTKLYEQRVQDLTSAYA AERLFDL NDSQD RRHPSSSSGG
Sbjct: 253 MSEKDKVFCFVEGLKPWAKTKLYEQRVQDLTSAYAAAERLFDLSNDSQDTRRHPSSSSGG 312

Query: 61  NRNDRPSSPKTTGRDKRFNGDRRPHQSNTGNSWRGSSNQNVSNRPLSCFICKGPHLAREC 120
           +RN+RPSSPKTTG D+RFNGDRR HQSNTGNSWRG SNQNVSNRPLSCFICKGPH+AREC
Sbjct: 313 SRNNRPSSPKTTGGDRRFNGDRRSHQSNTGNSWRGPSNQNVSNRPLSCFICKGPHMAREC 372

Query: 121 PNKTAFNVFQASLASDSDNRLSQTEREVDQTEEVDNARIGTLKFFSSLQKKVGETNTPVE 180
           PNKTAFN FQASLASDSDN+ +QTERE DQTEEVDN R+G LKF SSLQKKVGETNTPVE
Sbjct: 373 PNKTAFNAFQASLASDSDNQQNQTEREADQTEEVDNPRMGALKFLSSLQKKVGETNTPVE 432

Query: 181 RGLMYVDTWINQKPTKSTMVNSHATHNFITEVEAKRLNLRWEKDAGGMKAVNSDVLPIIG 240
           RGLMYVDTWIN+KPTKSTMV+S ATHNFITE EAKRLNLRWEKDAG MKAVNS  LPIIG
Sbjct: 433 RGLMYVDTWINEKPTKSTMVDSGATHNFITEAEAKRLNLRWEKDAGRMKAVNSAALPIIG 492

Query: 241 LVKQTMIRLGGWSGLVDFVVVKVDDFDVVLGIEFLLEHQVIPMPLAKCLVITGSTPSVVH 300
           LVK+TMIRLGGWSGLVDFVVVK+DDFDVVLG+EFLLEHQVIPMPLAKCLVITG TPSVV 
Sbjct: 493 LVKRTMIRLGGWSGLVDFVVVKMDDFDVVLGMEFLLEHQVIPMPLAKCLVITGPTPSVVQ 552

Query: 301 TDLRQPDGLKMISAMQLKKFLSRDEPT 328
           TDLRQPDGLKMISAMQLKK LSRDEPT
Sbjct: 553 TDLRQPDGLKMISAMQLKKGLSRDEPT 579

[Close]

BLAST of Pay0011678 vs. ExPASy TrEMBL
Match: A0A5D3C4R1 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold110G001990 PE=4 SV=1)

HSP 1 Score: 586.6 bits (1511), Expect = 6.4e-164
Identity = 295/327 (90.21%), Postives = 308/327 (94.19%), Query Frame = 0


Query: 1   MSEKDKVFCFVEGLKPWAKTKLYEQRVQDLTSAYAVAERLFDLFNDSQDARRHPSSSSGG 60
           MSEKDKVFCFVEGLKPWAKTKLYEQRVQDLTSAYA AERLFDL NDSQD RRHPSSSSGG
Sbjct: 283 MSEKDKVFCFVEGLKPWAKTKLYEQRVQDLTSAYAAAERLFDLSNDSQDTRRHPSSSSGG 342

Query: 61  NRNDRPSSPKTTGRDKRFNGDRRPHQSNTGNSWRGSSNQNVSNRPLSCFICKGPHLAREC 120
           +RN+RPSSPKTTG D+RF+GDRR HQSNTGNSWRGSSNQN+SNRPLSCFICKGPH+AREC
Sbjct: 343 SRNNRPSSPKTTGGDRRFSGDRRSHQSNTGNSWRGSSNQNLSNRPLSCFICKGPHMAREC 402

Query: 121 PNKTAFNVFQASLASDSDNRLSQTEREVDQTEEVDNARIGTLKFFSSLQKKVGETNTPVE 180
           PNKTAFN FQASL SDSDN+ SQTE EV+QTEEVDN R+G LKF SSLQKKVGETNTPVE
Sbjct: 403 PNKTAFNAFQASLTSDSDNQQSQTEGEVNQTEEVDNPRMGALKFLSSLQKKVGETNTPVE 462

Query: 181 RGLMYVDTWINQKPTKSTMVNSHATHNFITEVEAKRLNLRWEKDAGGMKAVNSDVLPIIG 240
           RGLMYVDTWINQKPTKSTMV+S ATHNFITEVEAKRLNLRWEKDAG MKAVNS  LPIIG
Sbjct: 463 RGLMYVDTWINQKPTKSTMVDSGATHNFITEVEAKRLNLRWEKDAGRMKAVNSAALPIIG 522

Query: 241 LVKQTMIRLGGWSGLVDFVVVKVDDFDVVLGIEFLLEHQVIPMPLAKCLVITGSTPSVVH 300
           LVK+TMIRLGGWSGLVDFVVVK+DDFDVVLG+EFLLEHQVIPMPLAKCLVITG TPSVV 
Sbjct: 523 LVKRTMIRLGGWSGLVDFVVVKMDDFDVVLGMEFLLEHQVIPMPLAKCLVITGPTPSVVQ 582

Query: 301 TDLRQPDGLKMISAMQLKKFLSRDEPT 328
           TDLRQPDGLKMISAMQLKK LSRDEPT
Sbjct: 583 TDLRQPDGLKMISAMQLKKGLSRDEPT 609

[Close]

BLAST of Pay0011678 vs. ExPASy TrEMBL
Match: A0A5D3BRZ6 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold113G00060 PE=4 SV=1)

HSP 1 Score: 586.6 bits (1511), Expect = 6.4e-164
Identity = 295/327 (90.21%), Postives = 308/327 (94.19%), Query Frame = 0


Query: 1   MSEKDKVFCFVEGLKPWAKTKLYEQRVQDLTSAYAVAERLFDLFNDSQDARRHPSSSSGG 60
           MSEKDKVFCFVEGLKPWAKTKLYEQRVQDLTSAYA AERLFDL NDSQD RRHPSSSSGG
Sbjct: 283 MSEKDKVFCFVEGLKPWAKTKLYEQRVQDLTSAYAAAERLFDLSNDSQDTRRHPSSSSGG 342

Query: 61  NRNDRPSSPKTTGRDKRFNGDRRPHQSNTGNSWRGSSNQNVSNRPLSCFICKGPHLAREC 120
           +RN+RPSSPKTTG D+RF+GDRR HQSNTGNSWRGSSNQN+SNRPLSCFICKGPH+AREC
Sbjct: 343 SRNNRPSSPKTTGGDRRFSGDRRSHQSNTGNSWRGSSNQNLSNRPLSCFICKGPHMAREC 402

Query: 121 PNKTAFNVFQASLASDSDNRLSQTEREVDQTEEVDNARIGTLKFFSSLQKKVGETNTPVE 180
           PNKTAFN FQASL SDSDN+ SQTE EV+QTEEVDN R+G LKF SSLQKKVGETNTPVE
Sbjct: 403 PNKTAFNAFQASLTSDSDNQQSQTEGEVNQTEEVDNPRMGALKFLSSLQKKVGETNTPVE 462

Query: 181 RGLMYVDTWINQKPTKSTMVNSHATHNFITEVEAKRLNLRWEKDAGGMKAVNSDVLPIIG 240
           RGLMYVDTWINQKPTKSTMV+S ATHNFITEVEAKRLNLRWEKDAG MKAVNS  LPIIG
Sbjct: 463 RGLMYVDTWINQKPTKSTMVDSGATHNFITEVEAKRLNLRWEKDAGRMKAVNSAALPIIG 522

Query: 241 LVKQTMIRLGGWSGLVDFVVVKVDDFDVVLGIEFLLEHQVIPMPLAKCLVITGSTPSVVH 300
           LVK+TMIRLGGWSGLVDFVVVK+DDFDVVLG+EFLLEHQVIPMPLAKCLVITG TPSVV 
Sbjct: 523 LVKRTMIRLGGWSGLVDFVVVKMDDFDVVLGMEFLLEHQVIPMPLAKCLVITGPTPSVVQ 582

Query: 301 TDLRQPDGLKMISAMQLKKFLSRDEPT 328
           TDLRQPDGLKMISAMQLKK LSRDEPT
Sbjct: 583 TDLRQPDGLKMISAMQLKKGLSRDEPT 609

[Close]

BLAST of Pay0011678 vs. ExPASy TrEMBL
Match: A0A5A7T0E2 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold20G001310 PE=4 SV=1)

HSP 1 Score: 586.6 bits (1511), Expect = 6.4e-164
Identity = 295/327 (90.21%), Postives = 308/327 (94.19%), Query Frame = 0


Query: 1   MSEKDKVFCFVEGLKPWAKTKLYEQRVQDLTSAYAVAERLFDLFNDSQDARRHPSSSSGG 60
           MSEKDKVFCFVEGLKPWAKTKLYEQRVQDLTSAYA AERLFDL NDSQD RRHPSSSSGG
Sbjct: 283 MSEKDKVFCFVEGLKPWAKTKLYEQRVQDLTSAYAAAERLFDLSNDSQDTRRHPSSSSGG 342

Query: 61  NRNDRPSSPKTTGRDKRFNGDRRPHQSNTGNSWRGSSNQNVSNRPLSCFICKGPHLAREC 120
           +RN+RPSSPKTTG D+RF+GDRR HQSNTGNSWRGSSNQN+SNRPLSCFICKGPH+AREC
Sbjct: 343 SRNNRPSSPKTTGGDRRFSGDRRSHQSNTGNSWRGSSNQNLSNRPLSCFICKGPHMAREC 402

Query: 121 PNKTAFNVFQASLASDSDNRLSQTEREVDQTEEVDNARIGTLKFFSSLQKKVGETNTPVE 180
           PNKTAFN FQASL SDSDN+ SQTE EV+QTEEVDN R+G LKF SSLQKKVGETNTPVE
Sbjct: 403 PNKTAFNAFQASLTSDSDNQQSQTEGEVNQTEEVDNPRMGALKFLSSLQKKVGETNTPVE 462

Query: 181 RGLMYVDTWINQKPTKSTMVNSHATHNFITEVEAKRLNLRWEKDAGGMKAVNSDVLPIIG 240
           RGLMYVDTWINQKPTKSTMV+S ATHNFITEVEAKRLNLRWEKDAG MKAVNS  LPIIG
Sbjct: 463 RGLMYVDTWINQKPTKSTMVDSGATHNFITEVEAKRLNLRWEKDAGRMKAVNSAALPIIG 522

Query: 241 LVKQTMIRLGGWSGLVDFVVVKVDDFDVVLGIEFLLEHQVIPMPLAKCLVITGSTPSVVH 300
           LVK+TMIRLGGWSGLVDFVVVK+DDFDVVLG+EFLLEHQVIPMPLAKCLVITG TPSVV 
Sbjct: 523 LVKRTMIRLGGWSGLVDFVVVKMDDFDVVLGMEFLLEHQVIPMPLAKCLVITGPTPSVVQ 582

Query: 301 TDLRQPDGLKMISAMQLKKFLSRDEPT 328
           TDLRQPDGLKMISAMQLKK LSRDEPT
Sbjct: 583 TDLRQPDGLKMISAMQLKKGLSRDEPT 609

[Close]

BLAST of Pay0011678 vs. NCBI nr
Match: TYK25585.1 (uncharacterized protein E5676_scaffold352G007440 [Cucumis melo var. makuwa])

HSP 1 Score: 592.4 bits (1526), Expect = 2.4e-165
Identity = 298/327 (91.13%), Postives = 309/327 (94.50%), Query Frame = 0


Query: 1   MSEKDKVFCFVEGLKPWAKTKLYEQRVQDLTSAYAVAERLFDLFNDSQDARRHPSSSSGG 60
           MSEKDKVFCFVEGLKPWAKTKLYEQRVQDLTSAYA AERLFDL NDSQD RRHPSSSSGG
Sbjct: 283 MSEKDKVFCFVEGLKPWAKTKLYEQRVQDLTSAYAAAERLFDLSNDSQDTRRHPSSSSGG 342

Query: 61  NRNDRPSSPKTTGRDKRFNGDRRPHQSNTGNSWRGSSNQNVSNRPLSCFICKGPHLAREC 120
           +RN+RPSSPKTTG D+RFNGDRR HQSNTGNSWRGSSNQN+SNRPLSCFICKGPH+AREC
Sbjct: 343 SRNNRPSSPKTTGGDRRFNGDRRSHQSNTGNSWRGSSNQNLSNRPLSCFICKGPHMAREC 402

Query: 121 PNKTAFNVFQASLASDSDNRLSQTEREVDQTEEVDNARIGTLKFFSSLQKKVGETNTPVE 180
           PNKTAFN FQASLASDSDN+ SQTEREVDQTEEVDN R+G LKF SSLQKKVGETNTPVE
Sbjct: 403 PNKTAFNAFQASLASDSDNQQSQTEREVDQTEEVDNPRMGALKFLSSLQKKVGETNTPVE 462

Query: 181 RGLMYVDTWINQKPTKSTMVNSHATHNFITEVEAKRLNLRWEKDAGGMKAVNSDVLPIIG 240
           RGLMYVDTWINQKPTKSTMV+S ATHNFITEVEAKRLNLRWEKDAG MKAVNS  LPIIG
Sbjct: 463 RGLMYVDTWINQKPTKSTMVDSGATHNFITEVEAKRLNLRWEKDAGRMKAVNSAALPIIG 522

Query: 241 LVKQTMIRLGGWSGLVDFVVVKVDDFDVVLGIEFLLEHQVIPMPLAKCLVITGSTPSVVH 300
           LVK+TMIRLGGWSGLVDFVVVK+DDFDVVLG+EFLLEHQVIPMPLAKCLVITG TPSVV 
Sbjct: 523 LVKRTMIRLGGWSGLVDFVVVKMDDFDVVLGMEFLLEHQVIPMPLAKCLVITGPTPSVVQ 582

Query: 301 TDLRQPDGLKMISAMQLKKFLSRDEPT 328
           TDLRQPDGLKMISAMQLKK L RDEPT
Sbjct: 583 TDLRQPDGLKMISAMQLKKGLFRDEPT 609

[Close]

BLAST of Pay0011678 vs. NCBI nr
Match: TYK07954.1 (reverse transcriptase [Cucumis melo var. makuwa])

HSP 1 Score: 588.6 bits (1516), Expect = 3.5e-164
Identity = 295/327 (90.21%), Postives = 307/327 (93.88%), Query Frame = 0


Query: 1   MSEKDKVFCFVEGLKPWAKTKLYEQRVQDLTSAYAVAERLFDLFNDSQDARRHPSSSSGG 60
           MSEKDKVFCFVEGLKPWAKTKLYEQRVQDLTSAYA AERLFDL NDSQD RRHPSSSSGG
Sbjct: 253 MSEKDKVFCFVEGLKPWAKTKLYEQRVQDLTSAYAAAERLFDLSNDSQDTRRHPSSSSGG 312

Query: 61  NRNDRPSSPKTTGRDKRFNGDRRPHQSNTGNSWRGSSNQNVSNRPLSCFICKGPHLAREC 120
           +RN+RPSSPKTTG D+RFNGDRR HQSNTGNSWRG SNQNVSNRPLSCFICKGPH+AREC
Sbjct: 313 SRNNRPSSPKTTGGDRRFNGDRRSHQSNTGNSWRGPSNQNVSNRPLSCFICKGPHMAREC 372

Query: 121 PNKTAFNVFQASLASDSDNRLSQTEREVDQTEEVDNARIGTLKFFSSLQKKVGETNTPVE 180
           PNKTAFN FQASLASDSDN+ +QTERE DQTEEVDN R+G LKF SSLQKKVGETNTPVE
Sbjct: 373 PNKTAFNAFQASLASDSDNQQNQTEREADQTEEVDNPRMGALKFLSSLQKKVGETNTPVE 432

Query: 181 RGLMYVDTWINQKPTKSTMVNSHATHNFITEVEAKRLNLRWEKDAGGMKAVNSDVLPIIG 240
           RGLMYVDTWIN+KPTKSTMV+S ATHNFITE EAKRLNLRWEKDAG MKAVNS  LPIIG
Sbjct: 433 RGLMYVDTWINEKPTKSTMVDSGATHNFITEAEAKRLNLRWEKDAGRMKAVNSAALPIIG 492

Query: 241 LVKQTMIRLGGWSGLVDFVVVKVDDFDVVLGIEFLLEHQVIPMPLAKCLVITGSTPSVVH 300
           LVK+TMIRLGGWSGLVDFVVVK+DDFDVVLG+EFLLEHQVIPMPLAKCLVITG TPSVV 
Sbjct: 493 LVKRTMIRLGGWSGLVDFVVVKMDDFDVVLGMEFLLEHQVIPMPLAKCLVITGPTPSVVQ 552

Query: 301 TDLRQPDGLKMISAMQLKKFLSRDEPT 328
           TDLRQPDGLKMISAMQLKK LSRDEPT
Sbjct: 553 TDLRQPDGLKMISAMQLKKGLSRDEPT 579

[Close]

BLAST of Pay0011678 vs. NCBI nr
Match: KAA0067557.1 (reverse transcriptase [Cucumis melo var. makuwa])

HSP 1 Score: 586.6 bits (1511), Expect = 1.3e-163
Identity = 295/327 (90.21%), Postives = 308/327 (94.19%), Query Frame = 0


Query: 1   MSEKDKVFCFVEGLKPWAKTKLYEQRVQDLTSAYAVAERLFDLFNDSQDARRHPSSSSGG 60
           MSEKDKVFCFVEGLKPWAKTKLYEQRVQDLTSAYA AERLFDL NDSQD RRHPSSSSGG
Sbjct: 279 MSEKDKVFCFVEGLKPWAKTKLYEQRVQDLTSAYAAAERLFDLSNDSQDTRRHPSSSSGG 338

Query: 61  NRNDRPSSPKTTGRDKRFNGDRRPHQSNTGNSWRGSSNQNVSNRPLSCFICKGPHLAREC 120
           +RN+RPSSPKTTG D+RF+GDRR HQSNTGNSWRGSSNQN+SNRPLSCFICKGPH+AREC
Sbjct: 339 SRNNRPSSPKTTGGDRRFSGDRRSHQSNTGNSWRGSSNQNLSNRPLSCFICKGPHMAREC 398

Query: 121 PNKTAFNVFQASLASDSDNRLSQTEREVDQTEEVDNARIGTLKFFSSLQKKVGETNTPVE 180
           PNKTAFN FQASL SDSDN+ SQTE EV+QTEEVDN R+G LKF SSLQKKVGETNTPVE
Sbjct: 399 PNKTAFNAFQASLTSDSDNQQSQTEGEVNQTEEVDNPRMGALKFLSSLQKKVGETNTPVE 458

Query: 181 RGLMYVDTWINQKPTKSTMVNSHATHNFITEVEAKRLNLRWEKDAGGMKAVNSDVLPIIG 240
           RGLMYVDTWINQKPTKSTMV+S ATHNFITEVEAKRLNLRWEKDAG MKAVNS  LPIIG
Sbjct: 459 RGLMYVDTWINQKPTKSTMVDSGATHNFITEVEAKRLNLRWEKDAGRMKAVNSAALPIIG 518

Query: 241 LVKQTMIRLGGWSGLVDFVVVKVDDFDVVLGIEFLLEHQVIPMPLAKCLVITGSTPSVVH 300
           LVK+TMIRLGGWSGLVDFVVVK+DDFDVVLG+EFLLEHQVIPMPLAKCLVITG TPSVV 
Sbjct: 519 LVKRTMIRLGGWSGLVDFVVVKMDDFDVVLGMEFLLEHQVIPMPLAKCLVITGPTPSVVQ 578

Query: 301 TDLRQPDGLKMISAMQLKKFLSRDEPT 328
           TDLRQPDGLKMISAMQLKK LSRDEPT
Sbjct: 579 TDLRQPDGLKMISAMQLKKGLSRDEPT 605

[Close]

BLAST of Pay0011678 vs. NCBI nr
Match: KAA0037220.1 (reverse transcriptase [Cucumis melo var. makuwa] >TYJ95897.1 reverse transcriptase [Cucumis melo var. makuwa] >TYJ99001.1 reverse transcriptase [Cucumis melo var. makuwa] >TYK01698.1 reverse transcriptase [Cucumis melo var. makuwa] >TYK02882.1 reverse transcriptase [Cucumis melo var. makuwa])

HSP 1 Score: 586.6 bits (1511), Expect = 1.3e-163
Identity = 295/327 (90.21%), Postives = 308/327 (94.19%), Query Frame = 0


Query: 1   MSEKDKVFCFVEGLKPWAKTKLYEQRVQDLTSAYAVAERLFDLFNDSQDARRHPSSSSGG 60
           MSEKDKVFCFVEGLKPWAKTKLYEQRVQDLTSAYA AERLFDL NDSQD RRHPSSSSGG
Sbjct: 283 MSEKDKVFCFVEGLKPWAKTKLYEQRVQDLTSAYAAAERLFDLSNDSQDTRRHPSSSSGG 342

Query: 61  NRNDRPSSPKTTGRDKRFNGDRRPHQSNTGNSWRGSSNQNVSNRPLSCFICKGPHLAREC 120
           +RN+RPSSPKTTG D+RF+GDRR HQSNTGNSWRGSSNQN+SNRPLSCFICKGPH+AREC
Sbjct: 343 SRNNRPSSPKTTGGDRRFSGDRRSHQSNTGNSWRGSSNQNLSNRPLSCFICKGPHMAREC 402

Query: 121 PNKTAFNVFQASLASDSDNRLSQTEREVDQTEEVDNARIGTLKFFSSLQKKVGETNTPVE 180
           PNKTAFN FQASL SDSDN+ SQTE EV+QTEEVDN R+G LKF SSLQKKVGETNTPVE
Sbjct: 403 PNKTAFNAFQASLTSDSDNQQSQTEGEVNQTEEVDNPRMGALKFLSSLQKKVGETNTPVE 462

Query: 181 RGLMYVDTWINQKPTKSTMVNSHATHNFITEVEAKRLNLRWEKDAGGMKAVNSDVLPIIG 240
           RGLMYVDTWINQKPTKSTMV+S ATHNFITEVEAKRLNLRWEKDAG MKAVNS  LPIIG
Sbjct: 463 RGLMYVDTWINQKPTKSTMVDSGATHNFITEVEAKRLNLRWEKDAGRMKAVNSAALPIIG 522

Query: 241 LVKQTMIRLGGWSGLVDFVVVKVDDFDVVLGIEFLLEHQVIPMPLAKCLVITGSTPSVVH 300
           LVK+TMIRLGGWSGLVDFVVVK+DDFDVVLG+EFLLEHQVIPMPLAKCLVITG TPSVV 
Sbjct: 523 LVKRTMIRLGGWSGLVDFVVVKMDDFDVVLGMEFLLEHQVIPMPLAKCLVITGPTPSVVQ 582

Query: 301 TDLRQPDGLKMISAMQLKKFLSRDEPT 328
           TDLRQPDGLKMISAMQLKK LSRDEPT
Sbjct: 583 TDLRQPDGLKMISAMQLKKGLSRDEPT 609

[Close]

BLAST of Pay0011678 vs. NCBI nr
Match: KAA0063412.1 (reverse transcriptase [Cucumis melo var. makuwa])

HSP 1 Score: 586.6 bits (1511), Expect = 1.3e-163
Identity = 295/327 (90.21%), Postives = 308/327 (94.19%), Query Frame = 0


Query: 1   MSEKDKVFCFVEGLKPWAKTKLYEQRVQDLTSAYAVAERLFDLFNDSQDARRHPSSSSGG 60
           MSEKDKVFCFVEGLKPWAKTKLYEQRVQDLTSAYA AERLFDL NDSQD RRHPSSSSGG
Sbjct: 283 MSEKDKVFCFVEGLKPWAKTKLYEQRVQDLTSAYAAAERLFDLSNDSQDTRRHPSSSSGG 342

Query: 61  NRNDRPSSPKTTGRDKRFNGDRRPHQSNTGNSWRGSSNQNVSNRPLSCFICKGPHLAREC 120
           +RN+RPSSPKTTG D+RF+GDRR HQSNTGNSWRGSSNQN+SNRPLSCFICKGPH+AREC
Sbjct: 343 SRNNRPSSPKTTGGDRRFSGDRRSHQSNTGNSWRGSSNQNLSNRPLSCFICKGPHMAREC 402

Query: 121 PNKTAFNVFQASLASDSDNRLSQTEREVDQTEEVDNARIGTLKFFSSLQKKVGETNTPVE 180
           PNKTAFN FQASL SDSDN+ SQTE EV+QTEEVDN R+G LKF SSLQKKVGETNTPVE
Sbjct: 403 PNKTAFNAFQASLTSDSDNQQSQTEGEVNQTEEVDNPRMGALKFLSSLQKKVGETNTPVE 462

Query: 181 RGLMYVDTWINQKPTKSTMVNSHATHNFITEVEAKRLNLRWEKDAGGMKAVNSDVLPIIG 240
           RGLMYVDTWINQKPTKSTMV+S ATHNFITEVEAKRLNLRWEKDAG MKAVNS  LPIIG
Sbjct: 463 RGLMYVDTWINQKPTKSTMVDSGATHNFITEVEAKRLNLRWEKDAGRMKAVNSAALPIIG 522

Query: 241 LVKQTMIRLGGWSGLVDFVVVKVDDFDVVLGIEFLLEHQVIPMPLAKCLVITGSTPSVVH 300
           LVK+TMIRLGGWSGLVDFVVVK+DDFDVVLG+EFLLEHQVIPMPLAKCLVITG TPSVV 
Sbjct: 523 LVKRTMIRLGGWSGLVDFVVVKMDDFDVVLGMEFLLEHQVIPMPLAKCLVITGPTPSVVQ 582

Query: 301 TDLRQPDGLKMISAMQLKKFLSRDEPT 328
           TDLRQPDGLKMISAMQLKK LSRDEPT
Sbjct: 583 TDLRQPDGLKMISAMQLKKGLSRDEPT 609

The following BLAST results are available for this feature:

BLAST of Pay0011678 vs.


Match Name	E-value	Identity	Description

BLAST of Pay0011678 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3DQ20	1.2e-165	91.13	Retrotrans_gag domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 ...	[more]
A0A5D3C9P8	1.7e-164	90.21	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold26...	[more]
A0A5D3C4R1	6.4e-164	90.21	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold11...	[more]
A0A5D3BRZ6	6.4e-164	90.21	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold11...	[more]
A0A5A7T0E2	6.4e-164	90.21	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold20...	[more]

BLAST of Pay0011678 vs. NCBI nr


Match Name	E-value	Identity	Description
TYK25585.1	2.4e-165	91.13	uncharacterized protein E5676_scaffold352G007440 [Cucumis melo var. makuwa]	[more]
TYK07954.1	3.5e-164	90.21	reverse transcriptase [Cucumis melo var. makuwa]	[more]
KAA0067557.1	1.3e-163	90.21	reverse transcriptase [Cucumis melo var. makuwa]	[more]
KAA0037220.1	1.3e-163	90.21	reverse transcriptase [Cucumis melo var. makuwa] >TYJ95897.1 reverse transcripta...	[more]
KAA0063412.1	1.3e-163	90.21	reverse transcriptase [Cucumis melo var. makuwa]	[more]

BLAST of Pay0011678 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (Payzawat) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 134..154
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 84..99
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 68..83
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 50..67
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 47..99
IPR019103	Aspartic peptidase, DDI1-type	PFAM	PF09668	Asp_protease	coord: 183..281 e-value: 1.6E-5 score: 24.7
IPR021109	Aspartic peptidase domain superfamily	GENE3D	2.40.70.10	Acid Proteases	coord: 166..302 e-value: 7.4E-15 score: 56.8

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Pay0011678.1	Pay0011678.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015074	DNA integration
biological_process	GO:0090305	nucleic acid phosphodiester bond hydrolysis
biological_process	GO:0006508	proteolysis
biological_process	GO:0006278	RNA-dependent DNA biosynthetic process
molecular_function	GO:0004190	aspartic-type endopeptidase activity
molecular_function	GO:0004519	endonuclease activity
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0003964	RNA-directed DNA polymerase activity
molecular_function	GO:0008270	zinc ion binding