Pay0011657 (gene) Melon (Payzawat) v1

Overview


Name	Pay0011657
Type	gene
Organism	Cucumis melo L. var. inodorus cv. Payzawat (Melon (Payzawat) v1)
Description	RT_RNaseH domain-containing protein
Location	chr03: 10204077 .. 10204508 (-)
RNA-Seq Expression	Pay0011657
Synteny	Pay0011657

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCCTCTTTCTATCTTCAAGAAATTAGGGATAAAAGAGGTACATCCAACTCATATGAGGCTCCAATTCGCTGACAGATCCATTGCCAAGCCAGAGGGCAAGATTGAAGATGTTTTAGTGAAAGTGGACAAGTTTTTGTTTCCCGCAAACTTTGTTATTTTAGATTACAAACCTGATCGAGAGGTTCCTATCATTTTAGGGCAGCCATTCCTGTCAACTGGTCATGTCCTTATAGACATCCACCAAAGGAAGTTGACAATATGTTTTAATGATGAGGAGATCAAGTTCAACATTGTCAATGCAATGAAGTTCCCCACTGATATTGAGAACTACAGTGCGATAGAGTCCCTTGGATGGGACTATTGCGAGGAAGAAGCCTATTACGAGTTGTTTAGCACTAAAGAATTCCTTGAAGAAGATGAACCAGATTAG

mRNA sequence

ATGCCTCTTTCTATCTTCAAGAAATTAGGGATAAAAGAGGTACATCCAACTCATATGAGGCTCCAATTCGCTGACAGATCCATTGCCAAGCCAGAGGGCAAGATTGAAGATGTTTTAGTGAAAGTGGACAAGTTTTTGTTTCCCGCAAACTTTGTTATTTTAGATTACAAACCTGATCGAGAGGTTCCTATCATTTTAGGGCAGCCATTCCTGTCAACTGGTCATGTCCTTATAGACATCCACCAAAGGAAGTTGACAATATGTTTTAATGATGAGGAGATCAAGTTCAACATTGTCAATGCAATGAAGTTCCCCACTGATATTGAGAACTACAGTGCGATAGAGTCCCTTGGATGGGACTATTGCGAGGAAGAAGCCTATTACGAGTTGTTTAGCACTAAAGAATTCCTTGAAGAAGATGAACCAGATTAG

Coding sequence (CDS)

ATGCCTCTTTCTATCTTCAAGAAATTAGGGATAAAAGAGGTACATCCAACTCATATGAGGCTCCAATTCGCTGACAGATCCATTGCCAAGCCAGAGGGCAAGATTGAAGATGTTTTAGTGAAAGTGGACAAGTTTTTGTTTCCCGCAAACTTTGTTATTTTAGATTACAAACCTGATCGAGAGGTTCCTATCATTTTAGGGCAGCCATTCCTGTCAACTGGTCATGTCCTTATAGACATCCACCAAAGGAAGTTGACAATATGTTTTAATGATGAGGAGATCAAGTTCAACATTGTCAATGCAATGAAGTTCCCCACTGATATTGAGAACTACAGTGCGATAGAGTCCCTTGGATGGGACTATTGCGAGGAAGAAGCCTATTACGAGTTGTTTAGCACTAAAGAATTCCTTGAAGAAGATGAACCAGATTAG

Protein sequence

MPLSIFKKLGIKEVHPTHMRLQFADRSIAKPEGKIEDVLVKVDKFLFPANFVILDYKPDREVPIILGQPFLSTGHVLIDIHQRKLTICFNDEEIKFNIVNAMKFPTDIENYSAIESLGWDYCEEEAYYELFSTKEFLEEDEPD

Homology

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BLAST of Pay0011657 vs. ExPASy TrEMBL
Match: A0A5D3BJ04 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold896G00480 PE=4 SV=1)

HSP 1 Score: 253.4 bits (646), Expect = 5.5e-64
Identity = 124/125 (99.20%), Postives = 124/125 (99.20%), Query Frame = 0


Query: 19  MRLQFADRSIAKPEGKIEDVLVKVDKFLFPANFVILDYKPDREVPIILGQPFLSTGHVLI 78
           MRLQFADRSIAKPEGKIEDVLVKVDKFLF ANFVILDYKPDREVPIILGQPFLSTGHVLI
Sbjct: 1   MRLQFADRSIAKPEGKIEDVLVKVDKFLFLANFVILDYKPDREVPIILGQPFLSTGHVLI 60

Query: 79  DIHQRKLTICFNDEEIKFNIVNAMKFPTDIENYSAIESLGWDYCEEEAYYELFSTKEFLE 138
           DIHQRKLTICFNDEEIKFNIVNAMKFPTDIENYSAIESLGWDYCEEEAYYELFSTKEFLE
Sbjct: 61  DIHQRKLTICFNDEEIKFNIVNAMKFPTDIENYSAIESLGWDYCEEEAYYELFSTKEFLE 120

Query: 139 EDEPD 144
           EDEPD
Sbjct: 121 EDEPD 125

[Close]

BLAST of Pay0011657 vs. ExPASy TrEMBL
Match: A0A5A7V931 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold154G001730 PE=4 SV=1)

HSP 1 Score: 195.3 bits (495), Expect = 1.8e-46
Identity = 93/118 (78.81%), Postives = 104/118 (88.14%), Query Frame = 0


Query: 26  RSIAKPEGKIEDVLVKVDKFLFPANFVILDYKPDREVPIILGQPFLSTGHVLIDIHQRKL 85
           R IAKPE KIEDVLVKVDKF    +FVILDYK D EVPIILGQPFLSTG  LID+HQ +L
Sbjct: 146 RPIAKPEDKIEDVLVKVDKFFLSTDFVILDYKADLEVPIILGQPFLSTGCTLIDVHQEEL 205

Query: 86  TICFNDEEIKFNIVNAMKFPTDIENYSAIESLGWDYCEEEAYYELFSTKEFLEEDEPD 144
           T+ FN+EEI FN++NAMKFP ++ENYSAIESLGWDYC+EEAYYELFST+EFLEEDEPD
Sbjct: 206 TMHFNNEEITFNVINAMKFPANVENYSAIESLGWDYCKEEAYYELFSTEEFLEEDEPD 263

[Close]

BLAST of Pay0011657 vs. ExPASy TrEMBL
Match: A0A5D3DTC1 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold313G002140 PE=4 SV=1)

HSP 1 Score: 193.4 bits (490), Expect = 6.7e-46
Identity = 92/116 (79.31%), Postives = 103/116 (88.79%), Query Frame = 0


Query: 28  IAKPEGKIEDVLVKVDKFLFPANFVILDYKPDREVPIILGQPFLSTGHVLIDIHQRKLTI 87
           IAKPE KIEDVLVKVDKF    +FVILDYK D EVPIILGQPFLSTG  LID+HQ +LT+
Sbjct: 124 IAKPEDKIEDVLVKVDKFFLSTDFVILDYKADLEVPIILGQPFLSTGCTLIDVHQEELTM 183

Query: 88  CFNDEEIKFNIVNAMKFPTDIENYSAIESLGWDYCEEEAYYELFSTKEFLEEDEPD 144
            FN+EEI FN++NAMKFP ++ENYSAIESLGWDYC+EEAYYELFST+EFLEEDEPD
Sbjct: 184 HFNNEEITFNVINAMKFPANVENYSAIESLGWDYCKEEAYYELFSTEEFLEEDEPD 239

[Close]

BLAST of Pay0011657 vs. ExPASy TrEMBL
Match: A0A5A7VJ95 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold2484G00710 PE=4 SV=1)

HSP 1 Score: 183.7 bits (465), Expect = 5.3e-43
Identity = 89/118 (75.42%), Postives = 104/118 (88.14%), Query Frame = 0


Query: 1   MPLSIFKKLGIKEVHPTHMRLQFADRSIAKPEGKIEDVLVKVDKFLFPANFVILDYKPDR 60
           MPLSIFKKL I+EV P HMRLQF DRSIAK EGKIED+LVKVDKFLF A+F+ILDY+ ++
Sbjct: 151 MPLSIFKKLEIEEVQPMHMRLQFVDRSIAKHEGKIEDILVKVDKFLFHADFIILDYEANQ 210

Query: 61  EVPIILGQPFLSTGHVLIDIHQRKLTICFNDEEIKFNIVNAMKFPTDIENYSAIESLG 119
           EVPII G+PFLSTGH LID+HQ +LT+ FND E+KFN++NAMKFPTD +NYS IESLG
Sbjct: 211 EVPIIFGRPFLSTGHALIDVHQGELTMRFND-EVKFNVMNAMKFPTDDKNYSMIESLG 267

[Close]

BLAST of Pay0011657 vs. ExPASy TrEMBL
Match: A0A1S3CN55 (uncharacterized protein LOC103502805 OS=Cucumis melo OX=3656 GN=LOC103502805 PE=4 SV=1)

HSP 1 Score: 183.7 bits (465), Expect = 5.3e-43
Identity = 89/118 (75.42%), Postives = 104/118 (88.14%), Query Frame = 0


Query: 1   MPLSIFKKLGIKEVHPTHMRLQFADRSIAKPEGKIEDVLVKVDKFLFPANFVILDYKPDR 60
           MPLSIFKKL I+EV P HMRLQF DRSIAK EGKIED+LVKVDKFLF A+F+ILDY+ ++
Sbjct: 62  MPLSIFKKLEIEEVQPMHMRLQFVDRSIAKHEGKIEDILVKVDKFLFHADFIILDYEANQ 121

Query: 61  EVPIILGQPFLSTGHVLIDIHQRKLTICFNDEEIKFNIVNAMKFPTDIENYSAIESLG 119
           EVPII G+PFLSTGH LID+HQ +LT+ FND E+KFN++NAMKFPTD +NYS IESLG
Sbjct: 122 EVPIIFGRPFLSTGHALIDVHQGELTMRFND-EVKFNVMNAMKFPTDDKNYSMIESLG 178

[Close]

BLAST of Pay0011657 vs. NCBI nr
Match: KAA0059788.1 (uncharacterized protein E6C27_scaffold108G00530 [Cucumis melo var. makuwa] >TYJ99800.1 uncharacterized protein E5676_scaffold896G00480 [Cucumis melo var. makuwa])

HSP 1 Score: 253.4 bits (646), Expect = 1.1e-63
Identity = 124/125 (99.20%), Postives = 124/125 (99.20%), Query Frame = 0


Query: 19  MRLQFADRSIAKPEGKIEDVLVKVDKFLFPANFVILDYKPDREVPIILGQPFLSTGHVLI 78
           MRLQFADRSIAKPEGKIEDVLVKVDKFLF ANFVILDYKPDREVPIILGQPFLSTGHVLI
Sbjct: 1   MRLQFADRSIAKPEGKIEDVLVKVDKFLFLANFVILDYKPDREVPIILGQPFLSTGHVLI 60

Query: 79  DIHQRKLTICFNDEEIKFNIVNAMKFPTDIENYSAIESLGWDYCEEEAYYELFSTKEFLE 138
           DIHQRKLTICFNDEEIKFNIVNAMKFPTDIENYSAIESLGWDYCEEEAYYELFSTKEFLE
Sbjct: 61  DIHQRKLTICFNDEEIKFNIVNAMKFPTDIENYSAIESLGWDYCEEEAYYELFSTKEFLE 120

Query: 139 EDEPD 144
           EDEPD
Sbjct: 121 EDEPD 125

[Close]

BLAST of Pay0011657 vs. NCBI nr
Match: KAA0062395.1 (uncharacterized protein E6C27_scaffold154G001730 [Cucumis melo var. makuwa])

HSP 1 Score: 195.3 bits (495), Expect = 3.6e-46
Identity = 93/118 (78.81%), Postives = 104/118 (88.14%), Query Frame = 0


Query: 26  RSIAKPEGKIEDVLVKVDKFLFPANFVILDYKPDREVPIILGQPFLSTGHVLIDIHQRKL 85
           R IAKPE KIEDVLVKVDKF    +FVILDYK D EVPIILGQPFLSTG  LID+HQ +L
Sbjct: 146 RPIAKPEDKIEDVLVKVDKFFLSTDFVILDYKADLEVPIILGQPFLSTGCTLIDVHQEEL 205

Query: 86  TICFNDEEIKFNIVNAMKFPTDIENYSAIESLGWDYCEEEAYYELFSTKEFLEEDEPD 144
           T+ FN+EEI FN++NAMKFP ++ENYSAIESLGWDYC+EEAYYELFST+EFLEEDEPD
Sbjct: 206 TMHFNNEEITFNVINAMKFPANVENYSAIESLGWDYCKEEAYYELFSTEEFLEEDEPD 263

[Close]

BLAST of Pay0011657 vs. NCBI nr
Match: TYK26585.1 (uncharacterized protein E5676_scaffold313G002140 [Cucumis melo var. makuwa])

HSP 1 Score: 193.4 bits (490), Expect = 1.4e-45
Identity = 92/116 (79.31%), Postives = 103/116 (88.79%), Query Frame = 0


Query: 28  IAKPEGKIEDVLVKVDKFLFPANFVILDYKPDREVPIILGQPFLSTGHVLIDIHQRKLTI 87
           IAKPE KIEDVLVKVDKF    +FVILDYK D EVPIILGQPFLSTG  LID+HQ +LT+
Sbjct: 124 IAKPEDKIEDVLVKVDKFFLSTDFVILDYKADLEVPIILGQPFLSTGCTLIDVHQEELTM 183

Query: 88  CFNDEEIKFNIVNAMKFPTDIENYSAIESLGWDYCEEEAYYELFSTKEFLEEDEPD 144
            FN+EEI FN++NAMKFP ++ENYSAIESLGWDYC+EEAYYELFST+EFLEEDEPD
Sbjct: 184 HFNNEEITFNVINAMKFPANVENYSAIESLGWDYCKEEAYYELFSTEEFLEEDEPD 239

[Close]

BLAST of Pay0011657 vs. NCBI nr
Match: KAA0067858.1 (uncharacterized protein E6C27_scaffold2484G00710 [Cucumis melo var. makuwa])

HSP 1 Score: 183.7 bits (465), Expect = 1.1e-42
Identity = 89/118 (75.42%), Postives = 104/118 (88.14%), Query Frame = 0


Query: 1   MPLSIFKKLGIKEVHPTHMRLQFADRSIAKPEGKIEDVLVKVDKFLFPANFVILDYKPDR 60
           MPLSIFKKL I+EV P HMRLQF DRSIAK EGKIED+LVKVDKFLF A+F+ILDY+ ++
Sbjct: 151 MPLSIFKKLEIEEVQPMHMRLQFVDRSIAKHEGKIEDILVKVDKFLFHADFIILDYEANQ 210

Query: 61  EVPIILGQPFLSTGHVLIDIHQRKLTICFNDEEIKFNIVNAMKFPTDIENYSAIESLG 119
           EVPII G+PFLSTGH LID+HQ +LT+ FND E+KFN++NAMKFPTD +NYS IESLG
Sbjct: 211 EVPIIFGRPFLSTGHALIDVHQGELTMRFND-EVKFNVMNAMKFPTDDKNYSMIESLG 267

[Close]

BLAST of Pay0011657 vs. NCBI nr
Match: XP_008465121.1 (PREDICTED: uncharacterized protein LOC103502805 [Cucumis melo])

HSP 1 Score: 183.7 bits (465), Expect = 1.1e-42
Identity = 89/118 (75.42%), Postives = 104/118 (88.14%), Query Frame = 0


Query: 1   MPLSIFKKLGIKEVHPTHMRLQFADRSIAKPEGKIEDVLVKVDKFLFPANFVILDYKPDR 60
           MPLSIFKKL I+EV P HMRLQF DRSIAK EGKIED+LVKVDKFLF A+F+ILDY+ ++
Sbjct: 62  MPLSIFKKLEIEEVQPMHMRLQFVDRSIAKHEGKIEDILVKVDKFLFHADFIILDYEANQ 121

Query: 61  EVPIILGQPFLSTGHVLIDIHQRKLTICFNDEEIKFNIVNAMKFPTDIENYSAIESLG 119
           EVPII G+PFLSTGH LID+HQ +LT+ FND E+KFN++NAMKFPTD +NYS IESLG
Sbjct: 122 EVPIIFGRPFLSTGHALIDVHQGELTMRFND-EVKFNVMNAMKFPTDDKNYSMIESLG 178

The following BLAST results are available for this feature:

BLAST of Pay0011657 vs.


Match Name	E-value	Identity	Description

BLAST of Pay0011657 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3BJ04	5.5e-64	99.20	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5A7V931	1.8e-46	78.81	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A5D3DTC1	6.7e-46	79.31	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5A7VJ95	5.3e-43	75.42	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A1S3CN55	5.3e-43	75.42	uncharacterized protein LOC103502805 OS=Cucumis melo OX=3656 GN=LOC103502805 PE=...	[more]

BLAST of Pay0011657 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0059788.1	1.1e-63	99.20	uncharacterized protein E6C27_scaffold108G00530 [Cucumis melo var. makuwa] >TYJ9...	[more]
KAA0062395.1	3.6e-46	78.81	uncharacterized protein E6C27_scaffold154G001730 [Cucumis melo var. makuwa]	[more]
TYK26585.1	1.4e-45	79.31	uncharacterized protein E5676_scaffold313G002140 [Cucumis melo var. makuwa]	[more]
KAA0067858.1	1.1e-42	75.42	uncharacterized protein E6C27_scaffold2484G00710 [Cucumis melo var. makuwa]	[more]
XP_008465121.1	1.1e-42	75.42	PREDICTED: uncharacterized protein LOC103502805 [Cucumis melo]	[more]

BLAST of Pay0011657 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (Payzawat) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR021109	Aspartic peptidase domain superfamily	GENE3D	2.40.70.10	Acid Proteases	coord: 1..100 e-value: 7.8E-19 score: 69.7
None	No IPR available	PANTHER	PTHR33067:SF24	SUBFAMILY NOT NAMED	coord: 1..112
None	No IPR available	PANTHER	PTHR33067	FAMILY NOT NAMED	coord: 1..112
None	No IPR available	CDD	cd00303	retropepsin_like	coord: 1..71 e-value: 1.11881E-9 score: 50.0276

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Pay0011657.1	Pay0011657.1	mRNA