Pay0011565 (gene) Melon (Payzawat) v1

Overview


Name	Pay0011565
Type	gene
Organism	Cucumis melo L. var. inodorus cv. Payzawat (Melon (Payzawat) v1)
Description	protein RADIALIS-like 1
Location	chr01: 18336786 .. 18338355 (-)
RNA-Seq Expression	Pay0011565
Synteny	Pay0011565

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexonthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTTCGATGTCTTCTCATGGATCTGGTACATGGACTGTAAAGCAAAACAAGGCCTTTGAGAAGGCATTGGCAGTTTATGATCAAGACACACCTGATCGATGGCTAAATGTTGCAAAAGCTGTGGGTGGAAAAACTGCTGAAGAAGTCAAGAGGCATTACGCACTTCTTGTCGAGGATGTTAAGTTTATTGAGTCTGGCCAAGTTCCTTTCCCTTATCGAACCTCCGGAGATGGTAACCAAGGTAATGCATAAGCCTTTCGTGTTAGTTGGTGATTTAATACACGGTATTAGAGTATGACGGTTTGTTTCAAAAATGTTAGTTTTTGTTCACCTTATTTGATCATCTACTATGTTTTGAAGCCTATAAGTGAAACGAGAATGTTAATTAATATATCGATATATAGCTAAATTTAGTATAACTTCTAAGCGTGGGAGATTTTAGGTTTGATTATTTGTTTAGACGATGACAAAATTAAACGGTATATACATTAAAAAAAGATTAATGATGACAATATATATTAGACAAATGAGATTATTTCATTTCAAGATTAAACTATTCGACCTTATTAGAAGTATGACTAATATATCTTCTAAAATTGTAAGGCTTTTCCATTATTATAATGTGGAGATTTTATTCACTCTCAGTATTCTATCTTTGAATTCACGATATATTCTTGTGTTGGAACTCAATTTTTGTTTGGAATCTAATAATGATTTGGTTTTCATAGACTTTGATACTTATTTAAAAAAACAGTTCTTGGATTAAATCATTATCTTTATAGTAACTAATACAATATAGTATTATTGTATAAAGTCATCTTATATTTAATGAAATAAATGATTCGAAACGTATATTTTTGTTAATAATTAGTCCTGTTTTCAACTGATATAGTTGAATTCAAACAAAGTACCCAAATGATTTTTTATGAAAAAGAAAAGAAAAAAAACAAACCCTCCCCCCTAACCCATTGGGTTTTGAATGATGTCTTGGCTCTCTTGCAAAAGCTATGTCTTTATACAATTTGTATGTATATGAGCAGAGGAAATGTCAATATCAATAAATAGTAGCCCCCCATTTGGCATGGCTTCTTCTCTGAATTTATGGTTGCATGTCTCAATAAAAATACAATATAATAACTCTTGATCTTGTAAGCTTTTTGAAAGGCCCCCTCTCTCTTCTTGTTCTTTGAAACTAAAGCTGCACCAATCCCTTAGCATTGCCTCTTCACAACCCCAATAAAAACAACATTTATATATATTAGGAATACTATAATAATAATATATCGTTTATAGAAATTAACATCTTGTTGTGTTGTTATTATTATCATTATGTTTTTGATTTTTTTTTTTTTTTTTGATTCTTAGGATGAGGAACATGAAGTTCCACCATGAGATTTGATGGTGAGAAGTAATGGAAGAATAAAGGAGGAAAGAAGAATGAATCTTTTGCTCTAACTTATATATAAAATATGATATATTTCTTGTGTTTTGTTTTTTCAATGATATCTAATATTATTGATTTGTGTTAAGCTTTTAAGTTATTGGTTAATTCCATGTATTATTGTGC

mRNA sequence

ATGGCTTCGATGTCTTCTCATGGATCTGGTACATGGACTGTAAAGCAAAACAAGGCCTTTGAGAAGGCATTGGCAGTTTATGATCAAGACACACCTGATCGATGGCTAAATGTTGCAAAAGCTGTGGGTGGAAAAACTGCTGAAGAAGTCAAGAGGCATTACGCACTTCTTGTCGAGGATGTTAAGTTTATTGAGTCTGGCCAAGTTCCTTTCCCTTATCGAACCTCCGGAGATGGTAACCAAGGATGAGGAACATGAAGTTCCACCATGAGATTTGATGGTGAGAAGTAATGGAAGAATAAAGGAGGAAAGAAGAATGAATCTTTTGCTCTAACTTATATATAAAATATGATATATTTCTTGTGTTTTGTTTTTTCAATGATATCTAATATTATTGATTTGTGTTAAGCTTTTAAGTTATTGGTTAATTCCATGTATTATTGTGC

Coding sequence (CDS)

ATGGCTTCGATGTCTTCTCATGGATCTGGTACATGGACTGTAAAGCAAAACAAGGCCTTTGAGAAGGCATTGGCAGTTTATGATCAAGACACACCTGATCGATGGCTAAATGTTGCAAAAGCTGTGGGTGGAAAAACTGCTGAAGAAGTCAAGAGGCATTACGCACTTCTTGTCGAGGATGTTAAGTTTATTGAGTCTGGCCAAGTTCCTTTCCCTTATCGAACCTCCGGAGATGGTAACCAAGGATGA

Protein sequence

MASMSSHGSGTWTVKQNKAFEKALAVYDQDTPDRWLNVAKAVGGKTAEEVKRHYALLVEDVKFIESGQVPFPYRTSGDGNQG

Homology

[Close]

BLAST of Pay0011565 vs. ExPASy Swiss-Prot
Match: F4JVB8 (Protein RADIALIS-like 1 OS=Arabidopsis thaliana OX=3702 GN=RL1 PE=2 SV=1)

HSP 1 Score: 122.5 bits (306), Expect = 2.3e-27
Identity = 59/82 (71.95%), Postives = 66/82 (80.49%), Query Frame = 0


Query: 2  ASMSSHGSGTWTVKQNKAFEKALAVYDQDTPDRWLNVAKAVGGKTAEEVKRHYALLVEDV 61
          +SMSS  SG+WT KQNKAFE+ALA YDQDTP+RW NVAK VGGKT EEVKRHY LLV+D+
Sbjct: 4  SSMSSQSSGSWTAKQNKAFEQALATYDQDTPNRWQNVAKVVGGKTTEEVKRHYELLVQDI 63

Query: 62 KFIESGQVPFP-YRTSGDGNQG 83
            IE+G VPFP YRTSG    G
Sbjct: 64 NSIENGHVPFPNYRTSGGCTNG 85

[Close]

BLAST of Pay0011565 vs. ExPASy Swiss-Prot
Match: Q9SIJ5 (Protein RADIALIS-like 2 OS=Arabidopsis thaliana OX=3702 GN=RL2 PE=2 SV=1)

HSP 1 Score: 122.5 bits (306), Expect = 2.3e-27
Identity = 60/82 (73.17%), Postives = 71/82 (86.59%), Query Frame = 0


Query: 3  SMSSHGSGTWTVKQNKAFEKALAVYDQDTPDRWLNVAKAVGGKTAEEVKRHYALLVEDVK 62
          SMSS+GSG+WTVKQNKAFE+ALAVYDQDTPDRW NVA+AVGGKT EE KR Y LLV D++
Sbjct: 5  SMSSYGSGSWTVKQNKAFERALAVYDQDTPDRWHNVARAVGGKTPEEAKRQYDLLVRDIE 64

Query: 63 FIESGQVPFP-YR-TSGDGNQG 83
           IE+G VPFP Y+ T+G+ N+G
Sbjct: 65 SIENGHVPFPDYKTTTGNSNRG 86

[Close]

BLAST of Pay0011565 vs. ExPASy Swiss-Prot
Match: Q58FS3 (Transcription factor RADIALIS OS=Antirrhinum majus OX=4151 GN=RAD PE=1 SV=1)

HSP 1 Score: 113.6 bits (283), Expect = 1.0e-24
Identity = 53/75 (70.67%), Postives = 66/75 (88.00%), Query Frame = 0


Query: 5  SSHGSG-TWTVKQNKAFEKALAVYDQDTPDRWLNVAKAVGGKTAEEVKRHYALLVEDVKF 64
          S+ GSG  W+ K+NKAFE+ALAVYD+DTPDRW NVA+AV G+T EEVK+HY +LVED+K+
Sbjct: 3  STRGSGRPWSAKENKAFERALAVYDKDTPDRWANVARAVEGRTPEEVKKHYEILVEDIKY 62

Query: 65 IESGQVPFP-YRTSG 78
          IESG+VPFP YRT+G
Sbjct: 63 IESGKVPFPNYRTTG 77

[Close]

BLAST of Pay0011565 vs. ExPASy Swiss-Prot
Match: Q6NNN0 (Protein RADIALIS-like 3 OS=Arabidopsis thaliana OX=3702 GN=RL3 PE=2 SV=1)

HSP 1 Score: 108.6 bits (270), Expect = 3.4e-23
Identity = 52/81 (64.20%), Postives = 64/81 (79.01%), Query Frame = 0


Query: 1  MASMSSHGSGTWTVKQNKAFEKALAVYDQDTPDRWLNVAKAVGGKTAEEVKRHYALLVED 60
          MAS S   S +WT K+NK FE+ALA YDQDTPDRW NVA+AVGGK+AEEV+RHY LL+ D
Sbjct: 1  MASNSMSSSASWTRKENKLFERALATYDQDTPDRWHNVARAVGGKSAEEVRRHYELLIRD 60

Query: 61 VKFIESGQVPFP-YRTSGDGN 81
          V  IESG+ P P YR++G+ +
Sbjct: 61 VNDIESGRYPHPNYRSNGNNH 81

[Close]

BLAST of Pay0011565 vs. ExPASy Swiss-Prot
Match: Q8GW75 (Protein RADIALIS-like 5 OS=Arabidopsis thaliana OX=3702 GN=RL5 PE=3 SV=1)

HSP 1 Score: 105.1 bits (261), Expect = 3.7e-22
Identity = 53/82 (64.63%), Postives = 62/82 (75.61%), Query Frame = 0


Query: 1  MASMSSHGSGTWTVKQNKAFEKALAVYDQDTPDRWLNVAKAVGGKTAEEVKRHYALLVED 60
          MAS S   S +WT KQNK FE+ALAVYD+DTPDRW NVAKAVG K+AEEVKRHY +LVED
Sbjct: 1  MASSSMSSSSSWTSKQNKMFERALAVYDKDTPDRWQNVAKAVGSKSAEEVKRHYDILVED 60

Query: 61 VKFIESGQVPFP-YRTSGDGNQ 82
          +  IE   VP P Y+T   G++
Sbjct: 61 LMNIEQDLVPLPKYKTVDVGSK 82

[Close]

BLAST of Pay0011565 vs. ExPASy TrEMBL
Match: A0A5A7SYK4 (Protein RADIALIS-like 1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1323G00110 PE=4 SV=1)

HSP 1 Score: 171.0 bits (432), Expect = 2.0e-39
Identity = 82/82 (100.00%), Postives = 82/82 (100.00%), Query Frame = 0


Query: 1  MASMSSHGSGTWTVKQNKAFEKALAVYDQDTPDRWLNVAKAVGGKTAEEVKRHYALLVED 60
          MASMSSHGSGTWTVKQNKAFEKALAVYDQDTPDRWLNVAKAVGGKTAEEVKRHYALLVED
Sbjct: 1  MASMSSHGSGTWTVKQNKAFEKALAVYDQDTPDRWLNVAKAVGGKTAEEVKRHYALLVED 60

Query: 61 VKFIESGQVPFPYRTSGDGNQG 83
          VKFIESGQVPFPYRTSGDGNQG
Sbjct: 61 VKFIESGQVPFPYRTSGDGNQG 82

[Close]

BLAST of Pay0011565 vs. ExPASy TrEMBL
Match: A0A1S3BFW6 (protein RADIALIS-like 1 OS=Cucumis melo OX=3656 GN=LOC103489573 PE=4 SV=1)

HSP 1 Score: 171.0 bits (432), Expect = 2.0e-39
Identity = 82/82 (100.00%), Postives = 82/82 (100.00%), Query Frame = 0


Query: 1  MASMSSHGSGTWTVKQNKAFEKALAVYDQDTPDRWLNVAKAVGGKTAEEVKRHYALLVED 60
          MASMSSHGSGTWTVKQNKAFEKALAVYDQDTPDRWLNVAKAVGGKTAEEVKRHYALLVED
Sbjct: 1  MASMSSHGSGTWTVKQNKAFEKALAVYDQDTPDRWLNVAKAVGGKTAEEVKRHYALLVED 60

Query: 61 VKFIESGQVPFPYRTSGDGNQG 83
          VKFIESGQVPFPYRTSGDGNQG
Sbjct: 61 VKFIESGQVPFPYRTSGDGNQG 82

[Close]

BLAST of Pay0011565 vs. ExPASy TrEMBL
Match: A0A0A0K348 (SANT domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_7G170600 PE=4 SV=1)

HSP 1 Score: 166.0 bits (419), Expect = 6.6e-38
Identity = 80/82 (97.56%), Postives = 80/82 (97.56%), Query Frame = 0


Query: 1  MASMSSHGSGTWTVKQNKAFEKALAVYDQDTPDRWLNVAKAVGGKTAEEVKRHYALLVED 60
          MASMSSHGSGTWTV QNKAFEKALAVYDQDTPDRWLNVAKAVGGKTAEEVKRHYALLVED
Sbjct: 1  MASMSSHGSGTWTVTQNKAFEKALAVYDQDTPDRWLNVAKAVGGKTAEEVKRHYALLVED 60

Query: 61 VKFIESGQVPFPYRTSGDGNQG 83
          VKFIESGQVPFPYRTSG GNQG
Sbjct: 61 VKFIESGQVPFPYRTSGGGNQG 82

[Close]

BLAST of Pay0011565 vs. ExPASy TrEMBL
Match: A0A6J1GJE9 (protein RADIALIS-like 1 OS=Cucurbita moschata OX=3662 GN=LOC111454834 PE=4 SV=1)

HSP 1 Score: 153.7 bits (387), Expect = 3.4e-34
Identity = 76/83 (91.57%), Postives = 78/83 (93.98%), Query Frame = 0


Query: 1  MASMSSHGS-GTWTVKQNKAFEKALAVYDQDTPDRWLNVAKAVGGKTAEEVKRHYALLVE 60
          MASMSSHGS GTWTVKQNKAFE+ALAVYDQDTPDRWLNVAKAV GKT EEV+RHYALLVE
Sbjct: 1  MASMSSHGSAGTWTVKQNKAFEQALAVYDQDTPDRWLNVAKAVPGKTVEEVERHYALLVE 60

Query: 61 DVKFIESGQVPFPYRTSGDGNQG 83
          DVKFIESGQVPFPYRTSG G QG
Sbjct: 61 DVKFIESGQVPFPYRTSGGGTQG 83

[Close]

BLAST of Pay0011565 vs. ExPASy TrEMBL
Match: A0A6J1C385 (protein RADIALIS-like 1 OS=Momordica charantia OX=3673 GN=LOC111007847 PE=4 SV=1)

HSP 1 Score: 152.1 bits (383), Expect = 9.8e-34
Identity = 73/82 (89.02%), Postives = 75/82 (91.46%), Query Frame = 0


Query: 1  MASMSSHGSGTWTVKQNKAFEKALAVYDQDTPDRWLNVAKAVGGKTAEEVKRHYALLVED 60
          MASMSSHGS  WT KQNKAFEKALAVYDQDTP+RWLNVAKAVGGKTAEEVKRHY LLVED
Sbjct: 1  MASMSSHGSSAWTAKQNKAFEKALAVYDQDTPERWLNVAKAVGGKTAEEVKRHYELLVED 60

Query: 61 VKFIESGQVPFPYRTSGDGNQG 83
          VKFIESGQV FPYRTSG G+ G
Sbjct: 61 VKFIESGQVSFPYRTSGGGSHG 82

[Close]

BLAST of Pay0011565 vs. NCBI nr
Match: KAA0036150.1 (protein RADIALIS-like 1 [Cucumis melo var. makuwa] >TYK01768.1 protein RADIALIS-like 1 [Cucumis melo var. makuwa])

HSP 1 Score: 171.0 bits (432), Expect = 4.2e-39
Identity = 82/82 (100.00%), Postives = 82/82 (100.00%), Query Frame = 0


Query: 1  MASMSSHGSGTWTVKQNKAFEKALAVYDQDTPDRWLNVAKAVGGKTAEEVKRHYALLVED 60
          MASMSSHGSGTWTVKQNKAFEKALAVYDQDTPDRWLNVAKAVGGKTAEEVKRHYALLVED
Sbjct: 1  MASMSSHGSGTWTVKQNKAFEKALAVYDQDTPDRWLNVAKAVGGKTAEEVKRHYALLVED 60

Query: 61 VKFIESGQVPFPYRTSGDGNQG 83
          VKFIESGQVPFPYRTSGDGNQG
Sbjct: 61 VKFIESGQVPFPYRTSGDGNQG 82

[Close]

BLAST of Pay0011565 vs. NCBI nr
Match: XP_008447024.1 (PREDICTED: protein RADIALIS-like 1 [Cucumis melo])

HSP 1 Score: 171.0 bits (432), Expect = 4.2e-39
Identity = 82/82 (100.00%), Postives = 82/82 (100.00%), Query Frame = 0


Query: 1  MASMSSHGSGTWTVKQNKAFEKALAVYDQDTPDRWLNVAKAVGGKTAEEVKRHYALLVED 60
          MASMSSHGSGTWTVKQNKAFEKALAVYDQDTPDRWLNVAKAVGGKTAEEVKRHYALLVED
Sbjct: 1  MASMSSHGSGTWTVKQNKAFEKALAVYDQDTPDRWLNVAKAVGGKTAEEVKRHYALLVED 60

Query: 61 VKFIESGQVPFPYRTSGDGNQG 83
          VKFIESGQVPFPYRTSGDGNQG
Sbjct: 61 VKFIESGQVPFPYRTSGDGNQG 82

[Close]

BLAST of Pay0011565 vs. NCBI nr
Match: XP_004151125.2 (protein RADIALIS-like 1 [Cucumis sativus])

HSP 1 Score: 166.0 bits (419), Expect = 1.4e-37
Identity = 80/82 (97.56%), Postives = 80/82 (97.56%), Query Frame = 0


Query: 1  MASMSSHGSGTWTVKQNKAFEKALAVYDQDTPDRWLNVAKAVGGKTAEEVKRHYALLVED 60
          MASMSSHGSGTWTV QNKAFEKALAVYDQDTPDRWLNVAKAVGGKTAEEVKRHYALLVED
Sbjct: 1  MASMSSHGSGTWTVTQNKAFEKALAVYDQDTPDRWLNVAKAVGGKTAEEVKRHYALLVED 60

Query: 61 VKFIESGQVPFPYRTSGDGNQG 83
          VKFIESGQVPFPYRTSG GNQG
Sbjct: 61 VKFIESGQVPFPYRTSGGGNQG 82

[Close]

BLAST of Pay0011565 vs. NCBI nr
Match: KAE8645641.1 (hypothetical protein Csa_020418 [Cucumis sativus])

HSP 1 Score: 164.1 bits (414), Expect = 5.2e-37
Identity = 79/81 (97.53%), Postives = 79/81 (97.53%), Query Frame = 0


Query: 1  MASMSSHGSGTWTVKQNKAFEKALAVYDQDTPDRWLNVAKAVGGKTAEEVKRHYALLVED 60
          MASMSSHGSGTWTV QNKAFEKALAVYDQDTPDRWLNVAKAVGGKTAEEVKRHYALLVED
Sbjct: 1  MASMSSHGSGTWTVTQNKAFEKALAVYDQDTPDRWLNVAKAVGGKTAEEVKRHYALLVED 60

Query: 61 VKFIESGQVPFPYRTSGDGNQ 82
          VKFIESGQVPFPYRTSG GNQ
Sbjct: 61 VKFIESGQVPFPYRTSGGGNQ 81

[Close]

BLAST of Pay0011565 vs. NCBI nr
Match: XP_038888369.1 (protein RADIALIS-like 1 [Benincasa hispida])

HSP 1 Score: 154.5 bits (389), Expect = 4.1e-34
Identity = 74/80 (92.50%), Postives = 76/80 (95.00%), Query Frame = 0


Query: 1  MASMSSHGSGTWTVKQNKAFEKALAVYDQDTPDRWLNVAKAVGGKTAEEVKRHYALLVED 60
          MASMSSHGSG+WT KQNKAFEKALAVYDQDTPDRWLNVAKAVGGKTAEEVK HYALLVED
Sbjct: 1  MASMSSHGSGSWTAKQNKAFEKALAVYDQDTPDRWLNVAKAVGGKTAEEVKMHYALLVED 60

Query: 61 VKFIESGQVPFPYRTSGDGN 81
          VKFIESGQVPFPYR+S  GN
Sbjct: 61 VKFIESGQVPFPYRSSRGGN 80

[Close]

BLAST of Pay0011565 vs. TAIR 10
Match: AT2G21650.1 (Homeodomain-like superfamily protein )

HSP 1 Score: 122.5 bits (306), Expect = 1.6e-28
Identity = 60/82 (73.17%), Postives = 71/82 (86.59%), Query Frame = 0


Query: 3  SMSSHGSGTWTVKQNKAFEKALAVYDQDTPDRWLNVAKAVGGKTAEEVKRHYALLVEDVK 62
          SMSS+GSG+WTVKQNKAFE+ALAVYDQDTPDRW NVA+AVGGKT EE KR Y LLV D++
Sbjct: 5  SMSSYGSGSWTVKQNKAFERALAVYDQDTPDRWHNVARAVGGKTPEEAKRQYDLLVRDIE 64

Query: 63 FIESGQVPFP-YR-TSGDGNQG 83
           IE+G VPFP Y+ T+G+ N+G
Sbjct: 65 SIENGHVPFPDYKTTTGNSNRG 86

[Close]

BLAST of Pay0011565 vs. TAIR 10
Match: AT4G39250.1 (RAD-like 1 )

HSP 1 Score: 122.5 bits (306), Expect = 1.6e-28
Identity = 59/82 (71.95%), Postives = 66/82 (80.49%), Query Frame = 0


Query: 2  ASMSSHGSGTWTVKQNKAFEKALAVYDQDTPDRWLNVAKAVGGKTAEEVKRHYALLVEDV 61
          +SMSS  SG+WT KQNKAFE+ALA YDQDTP+RW NVAK VGGKT EEVKRHY LLV+D+
Sbjct: 4  SSMSSQSSGSWTAKQNKAFEQALATYDQDTPNRWQNVAKVVGGKTTEEVKRHYELLVQDI 63

Query: 62 KFIESGQVPFP-YRTSGDGNQG 83
            IE+G VPFP YRTSG    G
Sbjct: 64 NSIENGHVPFPNYRTSGGCTNG 85

[Close]

BLAST of Pay0011565 vs. TAIR 10
Match: AT1G75250.1 (RAD-like 6 )

HSP 1 Score: 105.1 bits (261), Expect = 2.6e-23
Identity = 52/76 (68.42%), Postives = 59/76 (77.63%), Query Frame = 0


Query: 1  MASMSSHGSGTWTVKQNKAFEKALAVYDQDTPDRWLNVAKAVGGKTAEEVKRHYALLVED 60
          MAS S      WT  QNK FE+ALAVYD+DTPDRW NVAKAVGGKT EEVKRHY +LVED
Sbjct: 1  MASNSRSSISPWTFSQNKMFERALAVYDKDTPDRWHNVAKAVGGKTVEEVKRHYDILVED 60

Query: 61 VKFIESGQVPFP-YRT 76
          +  IE+G+VP P Y+T
Sbjct: 61 LINIETGRVPLPNYKT 76

[Close]

BLAST of Pay0011565 vs. TAIR 10
Match: AT1G19510.1 (RAD-like 5 )

HSP 1 Score: 105.1 bits (261), Expect = 2.6e-23
Identity = 53/82 (64.63%), Postives = 62/82 (75.61%), Query Frame = 0


Query: 1  MASMSSHGSGTWTVKQNKAFEKALAVYDQDTPDRWLNVAKAVGGKTAEEVKRHYALLVED 60
          MAS S   S +WT KQNK FE+ALAVYD+DTPDRW NVAKAVG K+AEEVKRHY +LVED
Sbjct: 1  MASSSMSSSSSWTSKQNKMFERALAVYDKDTPDRWQNVAKAVGSKSAEEVKRHYDILVED 60

Query: 61 VKFIESGQVPFP-YRTSGDGNQ 82
          +  IE   VP P Y+T   G++
Sbjct: 61 LMNIEQDLVPLPKYKTVDVGSK 82

[Close]

BLAST of Pay0011565 vs. TAIR 10
Match: AT1G75250.2 (RAD-like 6 )

HSP 1 Score: 105.1 bits (261), Expect = 2.6e-23
Identity = 52/76 (68.42%), Postives = 59/76 (77.63%), Query Frame = 0


Query: 1  MASMSSHGSGTWTVKQNKAFEKALAVYDQDTPDRWLNVAKAVGGKTAEEVKRHYALLVED 60
          MAS S      WT  QNK FE+ALAVYD+DTPDRW NVAKAVGGKT EEVKRHY +LVED
Sbjct: 1  MASNSRSSISPWTFSQNKMFERALAVYDKDTPDRWHNVAKAVGGKTVEEVKRHYDILVED 60

Query: 61 VKFIESGQVPFP-YRT 76
          +  IE+G+VP P Y+T
Sbjct: 61 LINIETGRVPLPNYKT 76

The following BLAST results are available for this feature:

BLAST of Pay0011565 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
F4JVB8	2.3e-27	71.95	Protein RADIALIS-like 1 OS=Arabidopsis thaliana OX=3702 GN=RL1 PE=2 SV=1	[more]
Q9SIJ5	2.3e-27	73.17	Protein RADIALIS-like 2 OS=Arabidopsis thaliana OX=3702 GN=RL2 PE=2 SV=1	[more]
Q58FS3	1.0e-24	70.67	Transcription factor RADIALIS OS=Antirrhinum majus OX=4151 GN=RAD PE=1 SV=1	[more]
Q6NNN0	3.4e-23	64.20	Protein RADIALIS-like 3 OS=Arabidopsis thaliana OX=3702 GN=RL3 PE=2 SV=1	[more]
Q8GW75	3.7e-22	64.63	Protein RADIALIS-like 5 OS=Arabidopsis thaliana OX=3702 GN=RL5 PE=3 SV=1	[more]

BLAST of Pay0011565 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7SYK4	2.0e-39	100.00	Protein RADIALIS-like 1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A1S3BFW6	2.0e-39	100.00	protein RADIALIS-like 1 OS=Cucumis melo OX=3656 GN=LOC103489573 PE=4 SV=1	[more]
A0A0A0K348	6.6e-38	97.56	SANT domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_7G170600 PE=4 S...	[more]
A0A6J1GJE9	3.4e-34	91.57	protein RADIALIS-like 1 OS=Cucurbita moschata OX=3662 GN=LOC111454834 PE=4 SV=1	[more]
A0A6J1C385	9.8e-34	89.02	protein RADIALIS-like 1 OS=Momordica charantia OX=3673 GN=LOC111007847 PE=4 SV=1	[more]

BLAST of Pay0011565 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0036150.1	4.2e-39	100.00	protein RADIALIS-like 1 [Cucumis melo var. makuwa] >TYK01768.1 protein RADIALIS-...	[more]
XP_008447024.1	4.2e-39	100.00	PREDICTED: protein RADIALIS-like 1 [Cucumis melo]	[more]
XP_004151125.2	1.4e-37	97.56	protein RADIALIS-like 1 [Cucumis sativus]	[more]
KAE8645641.1	5.2e-37	97.53	hypothetical protein Csa_020418 [Cucumis sativus]	[more]
XP_038888369.1	4.1e-34	92.50	protein RADIALIS-like 1 [Benincasa hispida]	[more]

BLAST of Pay0011565 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G21650.1	1.6e-28	73.17	Homeodomain-like superfamily protein	[more]
AT4G39250.1	1.6e-28	71.95	RAD-like 1	[more]
AT1G75250.1	2.6e-23	68.42	RAD-like 6	[more]
AT1G19510.1	2.6e-23	64.63	RAD-like 5	[more]
AT1G75250.2	2.6e-23	68.42	RAD-like 6	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (Payzawat) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001005	SANT/Myb domain	SMART	SM00717	sant	coord: 8..60 e-value: 5.3E-7 score: 39.3
IPR001005	SANT/Myb domain	PROSITE	PS50090	MYB_LIKE	coord: 4..58 score: 6.005018
IPR001005	SANT/Myb domain	CDD	cd00167	SANT	coord: 11..54 e-value: 4.20007E-7 score: 40.6366
None	No IPR available	GENE3D	1.10.10.60		coord: 3..71 e-value: 3.5E-23 score: 83.2
None	No IPR available	PANTHER	PTHR43952:SF68	MYB FAMILY TRANSCRIPTION FACTOR-RELATED	coord: 2..76
IPR044636	Transcription factor RADIALIS-like	PANTHER	PTHR43952	MYB FAMILY TRANSCRIPTION FACTOR-RELATED	coord: 2..76
IPR009057	Homeobox-like domain superfamily	SUPERFAMILY	46689	Homeodomain-like	coord: 10..66

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Pay0011565.1	Pay0011565.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006355	regulation of transcription, DNA-templated
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0003700	DNA-binding transcription factor activity