Pay0011516 (gene) Melon (Payzawat) v1

Overview
NamePay0011516
Typegene
OrganismCucumis melo L. var. inodorus cv. Payzawat (Melon (Payzawat) v1)
Descriptionhelicase sen1-like
Locationchr07: 11825115 .. 11826427 (+)
RNA-Seq ExpressionPay0011516
SyntenyPay0011516
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexonpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGACACCTTGCCTTCCCTCATATTTGCATTCTCTTTCTTCCTCGCTCTTGCTTGCTCTGACTCTTAAATCAAAGAGCTTCCTTTTCTTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCATATCTCTCTCTCTCTCTCCACTTATGCATTCAAGGATTCAAGGACTACCCATAAGGTAAAATTCTCCAACCACAAATACCCACCAATTTTTTTTCTCCCTTTTCTTTCAGCCTAGAAATTTGAGGGCGTTCCTAAGATCAGTCGTCTTCCACTAATGAGATTCAAATTGCTTAATTCTTGCCTTTGACTATTGGTTGGTTACATTACTTTTGAATCTGTACTGCCTATTATTGATTAGATTTATATTCGTCCGTTCGATCTCTAAGTTAGGTTGTTCTTGATTGGAATTGTAATGAGAGATTGGATTCTGGGATTCAAGTGCTTTTGGTTAGTTCCTTGCTGGTTTGGTAATTTTGACGACTGAGGAAGAGGAATTGATTGAAGGCGTGTGCATGATTTATTTGTTTATCTCTATTTCCCCTTTTTTGCCCTAGAAAGAAGCTTCTTGGTCGTGATTAAATATTGGGTTTATTTGGTTCAATGGCGGCTCCCTTGATCTGGTGCGATTTACTGGATTTTCAGTCGAACTGTCTTGCACTGTTTTTTGGTACCTTGAATGCCTAATTGGTTTGACACGCGGACGTTGTTATTCTGTTTTCGCCAATTAAGCGTCGTGGTTGAGTTTAAGCCTGCTCCTTAGTTTGCTCCATGTTTACTTGGTGTTCTTTGTCGTGGTGAGTCTGGTAACGTTAGTGGTTGTCCTTTGCAATCTTTCTTGGCGTTCTGAATCACGTGGGATTTAATAATCTGGATGGTGTTGTATGCAGTATCTTAAGTTGTGGATTCTACCGAAAGTTATACATTTTACTTCAACAAATTTTGTGGTGCATACATGACTGATGTTTTAATATCCTTCTCATATAAGTTGTTCCCTATTGAAGAGTTGATTTGTTTACATTGGAGCCCATAGGATCTCTACAACCTTGAACCATGATGATTAAACCTTTATGAATTAAAGCTTGGATCTTTCTTTCTTTCTTTTTTTTTTTTTTTTTTGCCACATTGACTGTTCTTGTCTTTTAATTTTTTGCACTTATTTCCTTTTTCATGTGTTGGTGATTCTTTCTTTTCTATGTATACTATATAACTGTATTTCATTCATATATGGACTTGCAGTTGAGGTTCAAGGTTTATTGGTCTCACATCCTTTTCAAGTTCGGCATTGGAGATAACTGTATCAATAGGGACTGTTAA

mRNA sequence

ATGACACCTTGCCTTCCCTCATATTTGCATTCTCTTTCTTCCTCGCTCTTGCTTGCTCTGACTCTTAAATCAAAGAGCTTCCTTTTCTTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCATATCTCTCTCTCTCTCTCCACTTATGCATTCAAGGATTCAAGGACTACCCATAAGTTGAGGTTCAAGGTTTATTGGTCTCACATCCTTTTCAAGTTCGGCATTGGAGATAACTGTATCAATAGGGACTGTTAA

Coding sequence (CDS)

ATGACACCTTGCCTTCCCTCATATTTGCATTCTCTTTCTTCCTCGCTCTTGCTTGCTCTGACTCTTAAATCAAAGAGCTTCCTTTTCTTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCATATCTCTCTCTCTCTCTCCACTTATGCATTCAAGGATTCAAGGACTACCCATAAGTTGAGGTTCAAGGTTTATTGGTCTCACATCCTTTTCAAGTTCGGCATTGGAGATAACTGTATCAATAGGGACTGTTAA

Protein sequence

MTPCLPSYLHSLSSSLLLALTLKSKSFLFFSLSLSLSLSHISLSLSTYAFKDSRTTHKLRFKVYWSHILFKFGIGDNCINRDC
Homology
[Close]
BLAST of Pay0011516 vs. ExPASy TrEMBL
Match: A0A6J1FPN2 (helicase sen1-like OS=Cucurbita moschata OX=3662 GN=LOC111446131 PE=4 SV=1)

HSP 1 Score: 54.3 bits (129), Expect = 2.8e-04
Identity = 39/69 (56.52%), Postives = 44/69 (63.77%), Query Frame = 0 

Query: 21 TLKSKSFLF-FSLSLSLSLSHIS-----LSLSTYAFKDSRTTHKLRFKVYWSHILFKFGI 80
          TL    F F F L+L+ S S I      LSLST AFKDSR+ H+   +VYW  ILFKF I
Sbjct: 18 TLLCLIFAFSFFLALACSDSQIKEPLFFLSLSTCAFKDSRSIHE-SVEVYWILILFKFLI 77

Query: 81 GDNCINRDC 84
          GDNCINR C
Sbjct: 78 GDNCINRAC 85

[Close]
BLAST of Pay0011516 vs. NCBI nr
Match: KAG7024634.1 (SPBC29A10.10c, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 67.4 bits (163), Expect = 6.6e-08
Identity = 37/69 (53.62%), Postives = 42/69 (60.87%), Query Frame = 0 

Query: 15 SLLLALTLKSKSFLFFSLSLSLSLSHISLSLSTYAFKDSRTTHKLRFKVYWSHILFKFGI 74
          +  LAL             L L    +SLS+S YAFKDSR+ HKLR KVYW+ ILFK   
Sbjct: 8  AFFLALACSDSRIKELPFLLPLIFLSLSLSISIYAFKDSRSIHKLRVKVYWTRILFKILA 67

Query: 75 GDNCINRDC 84
          GDNCINRDC
Sbjct: 68 GDNCINRDC 76

[Close]
BLAST of Pay0011516 vs. NCBI nr
Match: KAG6591752.1 (hypothetical protein SDJN03_14098, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 57.8 bits (138), Expect = 5.3e-05
Identity = 24/32 (75.00%), Postives = 26/32 (81.25%), Query Frame = 0 

Query: 52 DSRTTHKLRFKVYWSHILFKFGIGDNCINRDC 84
          DSR+ HKLR KVYW+ ILFK   GDNCINRDC
Sbjct: 2  DSRSIHKLRVKVYWTRILFKILAGDNCINRDC 33

[Close]
BLAST of Pay0011516 vs. NCBI nr
Match: XP_022940568.1 (helicase sen1-like [Cucurbita moschata])

HSP 1 Score: 54.3 bits (129), Expect = 5.8e-04
Identity = 39/69 (56.52%), Postives = 44/69 (63.77%), Query Frame = 0 

Query: 21 TLKSKSFLF-FSLSLSLSLSHIS-----LSLSTYAFKDSRTTHKLRFKVYWSHILFKFGI 80
          TL    F F F L+L+ S S I      LSLST AFKDSR+ H+   +VYW  ILFKF I
Sbjct: 18 TLLCLIFAFSFFLALACSDSQIKEPLFFLSLSTCAFKDSRSIHE-SVEVYWILILFKFLI 77

Query: 81 GDNCINRDC 84
          GDNCINR C
Sbjct: 78 GDNCINRAC 85

The following BLAST results are available for this feature:
BLAST of Pay0011516 vs.
Match NameE-valueIdentityDescription
BLAST of Pay0011516 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1FPN22.8e-0456.52helicase sen1-like OS=Cucurbita moschata OX=3662 GN=LOC111446131 PE=4 SV=1[more]
BLAST of Pay0011516 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG7024634.16.6e-0853.62SPBC29A10.10c, partial [Cucurbita argyrosperma subsp. argyrosperma][more]
KAG6591752.15.3e-0575.00hypothetical protein SDJN03_14098, partial [Cucurbita argyrosperma subsp. sorori... [more]
XP_022940568.15.8e-0456.52helicase sen1-like [Cucurbita moschata][more]
BLAST of Pay0011516 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Pay0011516.1Pay0011516.1mRNA