Pay0011513 (gene) Melon (Payzawat) v1

Overview


Name	Pay0011513
Type	gene
Organism	Cucumis melo L. var. inodorus cv. Payzawat (Melon (Payzawat) v1)
Description	F-box protein At3g62230
Location	chr05: 24554041 .. 24557101 (-)
RNA-Seq Expression	Pay0011513
Synteny	Pay0011513

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAGGTGGTGCAACCCTACCAATTGGCGAATGAGATAGTTTATGAGACAAAGGCATGCGAGTTTGAGAATGTGGGTGCAGATGCTGGCGATCTTACCAACAGCAACTGTGATTTCACGAAGAGGTGAGAATGTGAAAGGAAGGGAGATGCGTGTAATTTTGAAAAAAGTTATTTCTTTACAAAATAAAAAAACTAAAGTTAAAATTAAAAAGGAGCATTGATGTTAGTTTTGAAAAGGGAGGACGTTTAATGTCAGTTTTAAACCAACATTAAAGCTCTCTCTACATTCGTCTTTTCAAAACCGATATTAATCCTCATTTTTCATTTTTTCCAACAGACATTAAAGTCTAGATTTCTTCTAATGAAAGAAACAGTGGCTAAAATAAAGAAACAAAAATACAGACGAACCATTAGAAAAACAAGTTTCAACTGAAATTGAAACATACATCATATAGTGCTCAACATTAAACTCATCACCGGTAATGGAAAAACAAATGTATATTGGACCCAAAAAATGTACAAACATGAAAAAAAAAAAAAACATTAGTGTCTGACCACTAATTTACTCATCATGGGCTGAACATACCTTTGGTGTACACCGACGACCCCTACTTTGGTGTAAACCTATATAAAATAAAAACGAATTGTATGCATGCGGTAATTGAACCAACTTTTGCTTGTAATGACTGATTTTTTGACTTTTTTCATAAAAAGAAAAATTACTGATGGTTTTAGAAAAATCAAAAAAATCAGAAGATAGACATATATATTATATGTATATATATATATAATTATATATATTATTATCATTGTTTTAAACCAACTATGAGACACTAACAATTAACACAGCATGAAGTTAGGGGTTTAGGACAGATCAAAAATAAATTCTGTAATATAATAATAGTAAATTATTTAAACAAATTATAACAAATAGGATGTCCTTTCAACCTTAAAATTGTATGAACTTGGATTCAAAATAAATATGTTATAATTTCTAGTTTTAGTCAATAGTGAGTTTAATCAACATGCATAAATACGTACAACTTAAACACACTTTCTTTTTCAACTTGCACTTGAATTAACCAATTTTGTTGTAAAACTTTAGGGTTATCCAAAAAGAAAATGTTACAAAATGGATTTCATTTTATAAATATGAAGATGTTTCTTATTTTATTTTGATTATTCCTATTTTCTTTTTAATTTTGAATGAAGGTAATTCCTTTGGGAGATGAGCCGATTCGCATGCAAGCACCATTGAATATACAACATTTAAAAATGAGGACTAATATTCATCCAAATGAATTTTGTGGCATAATATTTCTATTGAATAGTTGTCCCCATTTGAAGAAGCTTACTCTCATGCTTGGCCAAGACTTCCAAAAATTCCTCCAAGTATAGTCCTCTTTTTCTTTTTTCCTCAGAATACCTCACTTCTACGTTTGGTGTTTGATTTTCTTTTTCTATTTTGTGATTATACACAGAGGTTTTTTGGATCTTGTCCACCACAAAACTATTATTGCAATAATTAAATGTTTTTGTTTTGTAATAGAATATCAGAAAGTTAGAGTTTATCGTTCATTAAGGGAAATAAAAGTTGGAGAATTTAATTCTTTGTTTTTAAATATCACAAGAAGTTAGGGTTATGTTATTAAGGAAACTAGTTGAATTGTTTGCTGTAATTTCTTTTTTCTTTGCGTTCTTTGCTCACTTCAGCTTAGTCGTGTGTGTCTCTTTTCTTTTTCTTTTTCTAAACACAACTTTTAAATAATGAATCATAAATTTTAAAATAACAATTACAATTACTTAACCTAGATGTGTTTTAATTATCTTAGTTTTCAAATATGGTAAATTAAAATAAAGTGAAGTATTTACAAATACGGTAAAATACTATTGTCCATTATTCATGATAAACAGCACTAATACTAGTCTATCATTGCCTATTTGTTTAATTATTGTAATATTTTTATTATATTATAAATGTTTTCAGTTATTTATTGTCATAAAATATAAAATACTAAAAAAAGTTTTATAAATATAACTCATCATTGAGATTGCTTATTTTTAATATTGTTTTAGATATTCTAATCAATATTTTTAACCCTAAGCCCTAAAAATTTTGTAAAAATAATGGTTTTTTCTCTTTTGGATTTAAAAATTCATGAAAAATAAATTATTTATAGACCTACTTATGATTATTTAAAAAGAAAACATTGTGAACAACCAAACCCCTTTATAATAATTTAACTTTCACGTAAGCTACATAACACAAATTTGTTGCATGAAATGTACGAAAATCATATAAAATCAAATTTGCAATAAAACTCCATTCTACCATTCCTTAAATTCTAAACAATGTATATTTTTGAAGTTAAAAACGATATAAGGAAAACAAAAAACATGATATTCTTTTAGTAGTTGAAATTATTTGAATTTTTAAATGCATGTCCTCCCCAATTTACATTTATGTTTGATAAACATATTTAATTTATATTCGTATTATTTATATTAGTTACAAATTTGATTCCAAGGTTTACAAAGAGATACGCCATGCATAAACACTCTAACTCTAACGATCATGTGTTTGGTTTTTAGAAAATACTTGGTTCATGTATTACACACCTCTAAATGTCTGTAATATTTAGTTTTTAATAACAAAACTAATATCTTACTTTGTCGGTGGACACACTAAAACATTATAAGTGAATAATGCCACATAAAATCTTTGTTTTGATTCATGTATAATTTATTCTTGTAATTTCTTTATATAGGATTATGAACCACCATTTCCAATGGACATAGGCACCTTTTGGGTCACAAATATGATACTCATAAACTGTTTATCAACATCTCTTGAGACAGTGGAAGTGAAGGGCTTCACAGGGAAGCAACATGAAATCCCATTTTTGGCTTATCTTATTCACTATGGTAAGCTTATAAAAACCCTATCTCTTGCTGTTGACTCTCATGATATTGCAGACACCCAAATCTATATTGAAAAAGCTCAGATTCTCAAGACCATCAAACCAGCCTCTAAGAAAATTCGCATTCATATAAGCTGA

mRNA sequence

ATGAAGGTGGTGCAACCCTACCAATTGGCGAATGAGATAGTTTATGAGACAAAGGCATGCGAGTTTGAGAATGTGGGTGCAGATGCTGGCGATCTTACCAACAGCAACTGTGATTTCACGAAGAGTTGTCCCCATTTGAAGAAGCTTACTCTCATGCTTGGCCAAGACTTCCAAAAATTCCTCCAAGATTATGAACCACCATTTCCAATGGACATAGGCACCTTTTGGGTCACAAATATGATACTCATAAACTGTTTATCAACATCTCTTGAGACAGTGGAAGTGAAGGGCTTCACAGGGAAGCAACATGAAATCCCATTTTTGGCTTATCTTATTCACTATGGTAAGCTTATAAAAACCCTATCTCTTGCTGTTGACTCTCATGATATTGCAGACACCCAAATCTATATTGAAAAAGCTCAGATTCTCAAGACCATCAAACCAGCCTCTAAGAAAATTCGCATTCATATAAGCTGA

Coding sequence (CDS)

ATGAAGGTGGTGCAACCCTACCAATTGGCGAATGAGATAGTTTATGAGACAAAGGCATGCGAGTTTGAGAATGTGGGTGCAGATGCTGGCGATCTTACCAACAGCAACTGTGATTTCACGAAGAGTTGTCCCCATTTGAAGAAGCTTACTCTCATGCTTGGCCAAGACTTCCAAAAATTCCTCCAAGATTATGAACCACCATTTCCAATGGACATAGGCACCTTTTGGGTCACAAATATGATACTCATAAACTGTTTATCAACATCTCTTGAGACAGTGGAAGTGAAGGGCTTCACAGGGAAGCAACATGAAATCCCATTTTTGGCTTATCTTATTCACTATGGTAAGCTTATAAAAACCCTATCTCTTGCTGTTGACTCTCATGATATTGCAGACACCCAAATCTATATTGAAAAAGCTCAGATTCTCAAGACCATCAAACCAGCCTCTAAGAAAATTCGCATTCATATAAGCTGA

Protein sequence

MKVVQPYQLANEIVYETKACEFENVGADAGDLTNSNCDFTKSCPHLKKLTLMLGQDFQKFLQDYEPPFPMDIGTFWVTNMILINCLSTSLETVEVKGFTGKQHEIPFLAYLIHYGKLIKTLSLAVDSHDIADTQIYIEKAQILKTIKPASKKIRIHIS

Homology

[Close]

BLAST of Pay0011513 vs. ExPASy TrEMBL
Match: A0A1S3CBL3 (F-box protein At3g62230 OS=Cucumis melo OX=3656 GN=LOC103499117 PE=4 SV=1)

HSP 1 Score: 224.9 bits (572), Expect = 2.3e-55
Identity = 112/117 (95.73%), Postives = 112/117 (95.73%), Query Frame = 0


Query: 42  SCPHLKKLTLMLGQDFQKFLQDYEPPFPMDIGTFWVTNMILINCLSTSLETVEVKGFTGK 101
           SCPHLKKLTLMLGQ   K  QDYEPPFPMDIGTFWVTNMILINCLSTSLETVEVKGFTGK
Sbjct: 345 SCPHLKKLTLMLGQG--KIFQDYEPPFPMDIGTFWVTNMILINCLSTSLETVEVKGFTGK 404

Query: 102 QHEIPFLAYLIHYGKLIKTLSLAVDSHDIADTQIYIEKAQILKTIKPASKKIRIHIS 159
           QHEIPFLAYLIHYGKLIKTLSLAVDSHDIADTQIYIEKAQILKTIKPASKKIRIHIS
Sbjct: 405 QHEIPFLAYLIHYGKLIKTLSLAVDSHDIADTQIYIEKAQILKTIKPASKKIRIHIS 459

[Close]

BLAST of Pay0011513 vs. ExPASy TrEMBL
Match: A0A0A0LGV7 (FBD domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_2G061575 PE=4 SV=1)

HSP 1 Score: 164.5 bits (415), Expect = 3.7e-37
Identity = 80/89 (89.89%), Postives = 84/89 (94.38%), Query Frame = 0


Query: 70  MDIGTFWVTNMILINCLSTSLETVEVKGFTGKQHEIPFLAYLIHYGKLIKTLSLAVDSHD 129
           MDIG+FW TNMILI CLSTSLETVEVKGFTGKQHEIPFLAYLIHYGKLIKTLS+ +DSHD
Sbjct: 1   MDIGSFWATNMILITCLSTSLETVEVKGFTGKQHEIPFLAYLIHYGKLIKTLSIDIDSHD 60

Query: 130 IADTQIYIEKAQILKTIKPASKKIRIHIS 159
           IA+TQIY EKAQILKTIKPASKKI IHIS
Sbjct: 61  IANTQIYFEKAQILKTIKPASKKIHIHIS 89

[Close]

BLAST of Pay0011513 vs. ExPASy TrEMBL
Match: A0A6J1D927 (F-box protein At3g62230-like OS=Momordica charantia OX=3673 GN=LOC111018173 PE=4 SV=1)

HSP 1 Score: 155.6 bits (392), Expect = 1.7e-34
Identity = 75/116 (64.66%), Postives = 91/116 (78.45%), Query Frame = 0


Query: 42  SCPHLKKLTLMLGQDFQKFLQDYEPPFPMDIGTFWVTNMILINCLSTSLETVEVKGFTGK 101
           S PHLK LTL+LGQ       +YEPPFPMDI +FW TNM++I CLS+SLETVE K FTGK
Sbjct: 356 SSPHLKILTLVLGQ--ATIFHEYEPPFPMDIASFWATNMVIIKCLSSSLETVEAKCFTGK 415

Query: 102 QHEIPFLAYLIHYGKLIKTLSLAVDSHDIADTQIYIEKAQILKTIKPASKKIRIHI 158
            HEI FLAYL+HYG+L+K LS+ VDS DI + Q+Y  +AQ+LK+IKPAS  I+IHI
Sbjct: 416 HHEIYFLAYLLHYGRLLKNLSITVDSDDINNFQLYFGRAQLLKSIKPASGDIQIHI 469

[Close]

BLAST of Pay0011513 vs. ExPASy TrEMBL
Match: A0A6J1KEB0 (putative F-box/LRR-repeat protein At1g56400 OS=Cucurbita maxima OX=3661 GN=LOC111492459 PE=4 SV=1)

HSP 1 Score: 141.7 bits (356), Expect = 2.6e-30
Identity = 69/117 (58.97%), Postives = 87/117 (74.36%), Query Frame = 0


Query: 42  SCPHLKKLTLMLGQDFQKFLQDYEPPFPMDIGTFWVTNMILINCLSTSLETVEVKGFTGK 101
           SCPHL  LTLMLG+     LQ+YEPPF +DI  FW TNM ++ CLS SLE V+ +GFTG 
Sbjct: 353 SCPHLNTLTLMLGEG--SVLQEYEPPFALDITRFWETNMTIMTCLSKSLEIVDARGFTGT 412

Query: 102 QHEIPFLAYLIHYGKLIKTLSLAVDSHD-IADTQIYIEKAQILKTIKPASKKIRIHI 158
            +EI FLAYLIHY +L++ + +AVDS D   +TQIY  KAQ+L TIKPAS+ ++IHI
Sbjct: 413 PNEITFLAYLIHYSRLLRAVFVAVDSDDGFENTQIYTRKAQVLNTIKPASRNLQIHI 467

[Close]

BLAST of Pay0011513 vs. ExPASy TrEMBL
Match: A0A6J1ET07 (F-box protein At3g62230-like OS=Cucurbita moschata OX=3662 GN=LOC111436214 PE=4 SV=1)

HSP 1 Score: 140.2 bits (352), Expect = 7.4e-30
Identity = 67/117 (57.26%), Postives = 87/117 (74.36%), Query Frame = 0


Query: 42  SCPHLKKLTLMLGQDFQKFLQDYEPPFPMDIGTFWVTNMILINCLSTSLETVEVKGFTGK 101
           SCPHL  LTLMLG+     LQ+YEPPF +D+  FW TNM ++ CLS SLE V+ +GFTG 
Sbjct: 353 SCPHLSTLTLMLGEG--NVLQEYEPPFALDVTRFWETNMTIMTCLSKSLEIVDARGFTGT 412

Query: 102 QHEIPFLAYLIHYGKLIKTLSLAVDSHD-IADTQIYIEKAQILKTIKPASKKIRIHI 158
            +EI FLAYLIHYG+ ++ + +AVDS D   +TQIY  KAQ+L TIKPAS+ +++HI
Sbjct: 413 PNEITFLAYLIHYGRRLRGVFVAVDSDDGFENTQIYTRKAQVLNTIKPASRNLQVHI 467

[Close]

BLAST of Pay0011513 vs. NCBI nr
Match: XP_008460240.1 (PREDICTED: F-box protein At3g62230 [Cucumis melo])

HSP 1 Score: 224.9 bits (572), Expect = 4.7e-55
Identity = 112/117 (95.73%), Postives = 112/117 (95.73%), Query Frame = 0


Query: 42  SCPHLKKLTLMLGQDFQKFLQDYEPPFPMDIGTFWVTNMILINCLSTSLETVEVKGFTGK 101
           SCPHLKKLTLMLGQ   K  QDYEPPFPMDIGTFWVTNMILINCLSTSLETVEVKGFTGK
Sbjct: 345 SCPHLKKLTLMLGQG--KIFQDYEPPFPMDIGTFWVTNMILINCLSTSLETVEVKGFTGK 404

Query: 102 QHEIPFLAYLIHYGKLIKTLSLAVDSHDIADTQIYIEKAQILKTIKPASKKIRIHIS 159
           QHEIPFLAYLIHYGKLIKTLSLAVDSHDIADTQIYIEKAQILKTIKPASKKIRIHIS
Sbjct: 405 QHEIPFLAYLIHYGKLIKTLSLAVDSHDIADTQIYIEKAQILKTIKPASKKIRIHIS 459

[Close]

BLAST of Pay0011513 vs. NCBI nr
Match: XP_011650125.1 (F-box protein At3g62230 [Cucumis sativus])

HSP 1 Score: 207.6 bits (527), Expect = 7.8e-50
Identity = 101/117 (86.32%), Postives = 106/117 (90.60%), Query Frame = 0


Query: 42  SCPHLKKLTLMLGQDFQKFLQDYEPPFPMDIGTFWVTNMILINCLSTSLETVEVKGFTGK 101
           SCPHLK LTLMLG+   K  QDYEPPFPMDIG+FW TNMILI CLSTSLETVEVKGFTGK
Sbjct: 346 SCPHLKNLTLMLGEG--KIFQDYEPPFPMDIGSFWATNMILITCLSTSLETVEVKGFTGK 405

Query: 102 QHEIPFLAYLIHYGKLIKTLSLAVDSHDIADTQIYIEKAQILKTIKPASKKIRIHIS 159
           QHEIPFLAYLIHYGKLIKTLS+ +DSHDIA+TQIY EKAQILKTIKPASKKI IHIS
Sbjct: 406 QHEIPFLAYLIHYGKLIKTLSIDIDSHDIANTQIYFEKAQILKTIKPASKKIHIHIS 460

[Close]

BLAST of Pay0011513 vs. NCBI nr
Match: KAE8651682.1 (hypothetical protein Csa_021280 [Cucumis sativus])

HSP 1 Score: 186.0 bits (471), Expect = 2.4e-43
Identity = 89/98 (90.82%), Postives = 93/98 (94.90%), Query Frame = 0


Query: 61  LQDYEPPFPMDIGTFWVTNMILINCLSTSLETVEVKGFTGKQHEIPFLAYLIHYGKLIKT 120
           LQDYEPPFPMDIG+FW TNMILI CLSTSLETVEVKGFTGKQHEIPFLAYLIHYGKLIKT
Sbjct: 305 LQDYEPPFPMDIGSFWATNMILITCLSTSLETVEVKGFTGKQHEIPFLAYLIHYGKLIKT 364

Query: 121 LSLAVDSHDIADTQIYIEKAQILKTIKPASKKIRIHIS 159
           LS+ +DSHDIA+TQIY EKAQILKTIKPASKKI IHIS
Sbjct: 365 LSIDIDSHDIANTQIYFEKAQILKTIKPASKKIHIHIS 402

[Close]

BLAST of Pay0011513 vs. NCBI nr
Match: XP_038889302.1 (F-box protein At3g62230-like [Benincasa hispida])

HSP 1 Score: 184.5 bits (467), Expect = 7.1e-43
Identity = 90/117 (76.92%), Postives = 100/117 (85.47%), Query Frame = 0


Query: 42  SCPHLKKLTLMLGQDFQKFLQDYEPPFPMDIGTFWVTNMILINCLSTSLETVEVKGFTGK 101
           SCP+LKKLTLMLGQ   K  QDYEPPF MDI  FW TNM+LI CLS SLETVEVKGF GK
Sbjct: 350 SCPYLKKLTLMLGQG--KIFQDYEPPFRMDIRRFWATNMVLIKCLSASLETVEVKGFKGK 409

Query: 102 QHEIPFLAYLIHYGKLIKTLSLAVDSHDIADTQIYIEKAQILKTIKPASKKIRIHIS 159
           QHEI FL +L+HYG+++KTLS+AVDSHDIA+ QIYIEKAQIL TIKPASK I+IHIS
Sbjct: 410 QHEISFLTHLLHYGRILKTLSVAVDSHDIANIQIYIEKAQILNTIKPASKNIQIHIS 464

[Close]

BLAST of Pay0011513 vs. NCBI nr
Match: XP_022149837.1 (F-box protein At3g62230-like [Momordica charantia])

HSP 1 Score: 155.6 bits (392), Expect = 3.5e-34
Identity = 75/116 (64.66%), Postives = 91/116 (78.45%), Query Frame = 0


Query: 42  SCPHLKKLTLMLGQDFQKFLQDYEPPFPMDIGTFWVTNMILINCLSTSLETVEVKGFTGK 101
           S PHLK LTL+LGQ       +YEPPFPMDI +FW TNM++I CLS+SLETVE K FTGK
Sbjct: 356 SSPHLKILTLVLGQ--ATIFHEYEPPFPMDIASFWATNMVIIKCLSSSLETVEAKCFTGK 415

Query: 102 QHEIPFLAYLIHYGKLIKTLSLAVDSHDIADTQIYIEKAQILKTIKPASKKIRIHI 158
            HEI FLAYL+HYG+L+K LS+ VDS DI + Q+Y  +AQ+LK+IKPAS  I+IHI
Sbjct: 416 HHEIYFLAYLLHYGRLLKNLSITVDSDDINNFQLYFGRAQLLKSIKPASGDIQIHI 469

[Close]

BLAST of Pay0011513 vs. TAIR 10
Match: AT5G60610.1 (F-box/RNI-like superfamily protein )

HSP 1 Score: 41.2 bits (95), Expect = 9.0e-04
Identity = 22/84 (26.19%), Postives = 46/84 (54.76%), Query Frame = 0


Query: 41  KSCPHLKKLTLMLGQDFQKFLQDYEPPFPMDIGTFWVTNMILINCLSTSLETVEVKGFTG 100
           ++ P+L+ L L    D++++ ++YE     +I         +  CL +SL+T+E  G+T 
Sbjct: 311 QNSPNLRVLNLDADSDYERY-EEYEQDNWKNI------QRSVPKCLKSSLKTLEFAGYTA 370

Query: 101 KQHEIPFLAYLIHYGKLIKTLSLA 125
           +  E  FL+++    + +KT S++
Sbjct: 371 RPEERDFLSFIFKKARCLKTSSIS 387

The following BLAST results are available for this feature:

BLAST of Pay0011513 vs.


Match Name	E-value	Identity	Description

BLAST of Pay0011513 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S3CBL3	2.3e-55	95.73	F-box protein At3g62230 OS=Cucumis melo OX=3656 GN=LOC103499117 PE=4 SV=1	[more]
A0A0A0LGV7	3.7e-37	89.89	FBD domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_2G061575 PE=4 SV...	[more]
A0A6J1D927	1.7e-34	64.66	F-box protein At3g62230-like OS=Momordica charantia OX=3673 GN=LOC111018173 PE=4...	[more]
A0A6J1KEB0	2.6e-30	58.97	putative F-box/LRR-repeat protein At1g56400 OS=Cucurbita maxima OX=3661 GN=LOC11...	[more]
A0A6J1ET07	7.4e-30	57.26	F-box protein At3g62230-like OS=Cucurbita moschata OX=3662 GN=LOC111436214 PE=4 ...	[more]

BLAST of Pay0011513 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008460240.1	4.7e-55	95.73	PREDICTED: F-box protein At3g62230 [Cucumis melo]	[more]
XP_011650125.1	7.8e-50	86.32	F-box protein At3g62230 [Cucumis sativus]	[more]
KAE8651682.1	2.4e-43	90.82	hypothetical protein Csa_021280 [Cucumis sativus]	[more]
XP_038889302.1	7.1e-43	76.92	F-box protein At3g62230-like [Benincasa hispida]	[more]
XP_022149837.1	3.5e-34	64.66	F-box protein At3g62230-like [Momordica charantia]	[more]

BLAST of Pay0011513 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G60610.1	9.0e-04	26.19	F-box/RNI-like superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (Payzawat) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR006566	FBD domain	PFAM	PF08387	FBD	coord: 83..123 e-value: 5.4E-8 score: 32.6

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Pay0011513.1	Pay0011513.1	mRNA