Pay0011420 (gene) Melon (Payzawat) v1

Overview


Name	Pay0011420
Type	gene
Organism	Cucumis melo L. var. inodorus cv. Payzawat (Melon (Payzawat) v1)
Description	Ribonuclease H
Location	chr12: 4571336 .. 4572046 (-)
RNA-Seq Expression	Pay0011420
Synteny	Pay0011420

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGACTTCAAGTAGCATGCGATATGAGTATTAAAAAGTTGAAAGTTTTGGGTGACTCGATGTTAGTGATACATCAAGTCAAGGAAGAATGGGAAACAAGAGATGCTAAATTGGTACCTTACAGCCAATACGTTACTAAATTGTCTCAAAATTTTGAGAAGATTTCATTTGACCATGTTCCTAGGGAAGACAATCGAATGGCGGATGCATTAGCCACTCTGGCAGTGATGTTTGATCTTAATCTTGAATTTGAACTTCATCCAATCCAAATTACAAAGCGAGATGTGCCAGCATATTGCATGAATGTTGGAAATGATAACAAGCCATGGTATTTTGACATTAAGCAATACATAAAGTGTAGAGAATATCCATACGAAGCTTCAGAAAATGACAAACGCACAATAAGTAGGTTGGCCATGAACTTTTTCTTAAGTGGTGAAGTTCTTTATAAAAGAAACCACGATATGGTGCTCCTTCGGTGTGTTGATGAAGAGGAAGCAAAACAAATTATGACAGACATTTATGAAGGAATATGTGGAACACATGCTAATGGACATATGATGGCTAGACAAATACTTAGATCTGGTTATTATTGGACAACGATGGAATCAGATTGCATAAAATATGCAAGGGAATGTAAAGAGTGTCAAATTTATATGGATAAGATCCATGTAGCAGCATCTCCATTGCATATCTTGTCAGCACCATGA

mRNA sequence

ATGGGACTTCAAGTAGCATGCGATATGAGTATTAAAAAGTTGAAAGTTTTGGGTGACTCGATGTTAGTGATACATCAAGTCAAGGAAGAATGGGAAACAAGAGATGCTAAATTGGTACCTTACAGCCAATACGTTACTAAATTGTCTCAAAATTTTGAGAAGATTTCATTTGACCATGTTCCTAGGGAAGACAATCGAATGGCGGATGCATTAGCCACTCTGGCAGTGATGTTTGATCTTAATCTTGAATTTGAACTTCATCCAATCCAAATTACAAAGCGAGATGTGCCAGCATATTGCATGAATGTTGGAAATGATAACAAGCCATGGTATTTTGACATTAAGCAATACATAAAGTGTAGAGAATATCCATACGAAGCTTCAGAAAATGACAAACGCACAATAAGTAGGTTGGCCATGAACTTTTTCTTAAGTGGTGAAGTTCTTTATAAAAGAAACCACGATATGGTGCTCCTTCGGTGTGTTGATGAAGAGGAAGCAAAACAAATTATGACAGACATTTATGAAGGAATATGTGGAACACATGCTAATGGACATATGATGGCTAGACAAATACTTAGATCTGGTTATTATTGGACAACGATGGAATCAGATTGCATAAAATATGCAAGGGAATGTAAAGAGTGTCAAATTTATATGGATAAGATCCATGTAGCAGCATCTCCATTGCATATCTTGTCAGCACCATGA

Coding sequence (CDS)

ATGGGACTTCAAGTAGCATGCGATATGAGTATTAAAAAGTTGAAAGTTTTGGGTGACTCGATGTTAGTGATACATCAAGTCAAGGAAGAATGGGAAACAAGAGATGCTAAATTGGTACCTTACAGCCAATACGTTACTAAATTGTCTCAAAATTTTGAGAAGATTTCATTTGACCATGTTCCTAGGGAAGACAATCGAATGGCGGATGCATTAGCCACTCTGGCAGTGATGTTTGATCTTAATCTTGAATTTGAACTTCATCCAATCCAAATTACAAAGCGAGATGTGCCAGCATATTGCATGAATGTTGGAAATGATAACAAGCCATGGTATTTTGACATTAAGCAATACATAAAGTGTAGAGAATATCCATACGAAGCTTCAGAAAATGACAAACGCACAATAAGTAGGTTGGCCATGAACTTTTTCTTAAGTGGTGAAGTTCTTTATAAAAGAAACCACGATATGGTGCTCCTTCGGTGTGTTGATGAAGAGGAAGCAAAACAAATTATGACAGACATTTATGAAGGAATATGTGGAACACATGCTAATGGACATATGATGGCTAGACAAATACTTAGATCTGGTTATTATTGGACAACGATGGAATCAGATTGCATAAAATATGCAAGGGAATGTAAAGAGTGTCAAATTTATATGGATAAGATCCATGTAGCAGCATCTCCATTGCATATCTTGTCAGCACCATGA

Protein sequence

MGLQVACDMSIKKLKVLGDSMLVIHQVKEEWETRDAKLVPYSQYVTKLSQNFEKISFDHVPREDNRMADALATLAVMFDLNLEFELHPIQITKRDVPAYCMNVGNDNKPWYFDIKQYIKCREYPYEASENDKRTISRLAMNFFLSGEVLYKRNHDMVLLRCVDEEEAKQIMTDIYEGICGTHANGHMMARQILRSGYYWTTMESDCIKYARECKECQIYMDKIHVAASPLHILSAP

Homology

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BLAST of Pay0011420 vs. ExPASy Swiss-Prot
Match: Q8K259 (Gypsy retrotransposon integrase-like protein 1 OS=Mus musculus OX=10090 GN=Gin1 PE=2 SV=2)

HSP 1 Score: 53.5 bits (127), Expect = 3.7e-06
Identity = 32/115 (27.83%), Postives = 55/115 (47.83%), Query Frame = 0


Query: 114 IKQYIKCREYPYEASENDKRTISRLAMNFFLSGEVLYKRNHDMVLLR--CVDEEEAKQIM 173
           I  Y +  EY      +++  I R A  F    + L+    D    R   V EEE K+++
Sbjct: 15  IAYYKRTGEYHPTTLPSERSGIRRAAKKFVFKEKKLFYVGKDRKQNRLVVVSEEEKKKVL 74

Query: 174 TDIYEGICGTHANGHMMARQILRSGYYWTTMESDCIKYARECKECQIYMDKIHVA 227
            + +E   G H +G      ++ SGYYWT++ +D  ++   C+ CQ+  + + VA
Sbjct: 75  RECHENGPGVH-HGISRTLTLVESGYYWTSVTNDVKQWVYACQHCQVAKNTVIVA 128

[Close]

BLAST of Pay0011420 vs. ExPASy TrEMBL
Match: A0A5A7T1X2 (Ribonuclease H OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold86G00190 PE=4 SV=1)

HSP 1 Score: 485.7 bits (1249), Expect = 1.1e-133
Identity = 232/236 (98.31%), Postives = 233/236 (98.73%), Query Frame = 0


Query: 1   MGLQVACDMSIKKLKVLGDSMLVIHQVKEEWETRDAKLVPYSQYVTKLSQNFEKISFDHV 60
           MGLQVACDMSIKKLKVLGDSMLVIHQVKEEWETRDAKLVPYSQYVTKLSQ FEKISFDHV
Sbjct: 48  MGLQVACDMSIKKLKVLGDSMLVIHQVKEEWETRDAKLVPYSQYVTKLSQKFEKISFDHV 107

Query: 61  PREDNRMADALATLAVMFDLNLEFELHPIQITKRDVPAYCMNVGNDNKPWYFDIKQYIKC 120
           PREDNRMADALATLAVMFDLNLEFELHPIQITKRDVPAYCMNVGNDNKPWYFDIKQYIKC
Sbjct: 108 PREDNRMADALATLAVMFDLNLEFELHPIQITKRDVPAYCMNVGNDNKPWYFDIKQYIKC 167

Query: 121 REYPYEASENDKRTISRLAMNFFLSGEVLYKRNHDMVLLRCVDEEEAKQIMTDIYEGICG 180
           REYPYEASENDKRTI RLAMNFFLSGEVLYKRNHDMVLLRCVDEEEAKQIMTDIYEGICG
Sbjct: 168 REYPYEASENDKRTIRRLAMNFFLSGEVLYKRNHDMVLLRCVDEEEAKQIMTDIYEGICG 227

Query: 181 THANGHMMARQILRSGYYWTTMESDCIKYARECKECQIYMDKIHVAASPLHILSAP 237
           THANGHMMARQILRSGYYWTTMESDCIKYARECK+CQIYMDKIHVAAS LHILSAP
Sbjct: 228 THANGHMMARQILRSGYYWTTMESDCIKYARECKKCQIYMDKIHVAASSLHILSAP 283

[Close]

BLAST of Pay0011420 vs. ExPASy TrEMBL
Match: A0A5A7T0A1 (Ribonuclease H OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold86G00070 PE=4 SV=1)

HSP 1 Score: 484.6 bits (1246), Expect = 2.4e-133
Identity = 232/236 (98.31%), Postives = 233/236 (98.73%), Query Frame = 0


Query: 1   MGLQVACDMSIKKLKVLGDSMLVIHQVKEEWETRDAKLVPYSQYVTKLSQNFEKISFDHV 60
           MGLQVA DMSIKKLKVLGDSMLVIHQVKEEWE RDAKLVPYSQYVTKLSQNFEKISFDHV
Sbjct: 361 MGLQVAWDMSIKKLKVLGDSMLVIHQVKEEWEIRDAKLVPYSQYVTKLSQNFEKISFDHV 420

Query: 61  PREDNRMADALATLAVMFDLNLEFELHPIQITKRDVPAYCMNVGNDNKPWYFDIKQYIKC 120
           PREDNRMADALATLAVMFDLNLEFELHPIQITKRDVPAYCMNVGNDNKPWYFDIKQYIKC
Sbjct: 421 PREDNRMADALATLAVMFDLNLEFELHPIQITKRDVPAYCMNVGNDNKPWYFDIKQYIKC 480

Query: 121 REYPYEASENDKRTISRLAMNFFLSGEVLYKRNHDMVLLRCVDEEEAKQIMTDIYEGICG 180
           REYPYEASENDKRTI RLAMNFFLSGEVLYKRNHDMVLLRCVDEEEAKQIMTDIYEGICG
Sbjct: 481 REYPYEASENDKRTIRRLAMNFFLSGEVLYKRNHDMVLLRCVDEEEAKQIMTDIYEGICG 540

Query: 181 THANGHMMARQILRSGYYWTTMESDCIKYARECKECQIYMDKIHVAASPLHILSAP 237
           THANGHMMARQILRSGYYWTTMESDCIKYARECK+CQIYMDKIHVAASPLHILSAP
Sbjct: 541 THANGHMMARQILRSGYYWTTMESDCIKYARECKKCQIYMDKIHVAASPLHILSAP 596

[Close]

BLAST of Pay0011420 vs. ExPASy TrEMBL
Match: A0A5D3DMD2 (Ribonuclease H OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold717G00160 PE=4 SV=1)

HSP 1 Score: 479.9 bits (1234), Expect = 5.9e-132
Identity = 228/235 (97.02%), Postives = 231/235 (98.30%), Query Frame = 0


Query: 1   MGLQVACDMSIKKLKVLGDSMLVIHQVKEEWETRDAKLVPYSQYVTKLSQNFEKISFDHV 60
           MGLQVACDMSIKKLKVLGDSMLVIHQVKEEWETRDAKLVPYSQYVTKLSQNFEKISFDHV
Sbjct: 446 MGLQVACDMSIKKLKVLGDSMLVIHQVKEEWETRDAKLVPYSQYVTKLSQNFEKISFDHV 505

Query: 61  PREDNRMADALATLAVMFDLNLEFELHPIQITKRDVPAYCMNVGNDNKPWYFDIKQYIKC 120
           PREDNRMADALATLAVMFDLNLEFELHPIQITKRDVPAYCMNVGNDNKPWYFDIKQYIKC
Sbjct: 506 PREDNRMADALATLAVMFDLNLEFELHPIQITKRDVPAYCMNVGNDNKPWYFDIKQYIKC 565

Query: 121 REYPYEASENDKRTISRLAMNFFLSGEVLYKRNHDMVLLRCVDEEEAKQIMTDIYEGICG 180
           REYPYEASENDKR I RL MNFFLSGEVLYKRNHDMVLLRCVDEEEAKQIMTDI+EGICG
Sbjct: 566 REYPYEASENDKRAIRRLTMNFFLSGEVLYKRNHDMVLLRCVDEEEAKQIMTDIHEGICG 625

Query: 181 THANGHMMARQILRSGYYWTTMESDCIKYARECKECQIYMDKIHVAASPLHILSA 236
           THANGHMMARQILRSGYYWTTMESDCIKYAR+CK+CQIYMDKIHVAASPLHI SA
Sbjct: 626 THANGHMMARQILRSGYYWTTMESDCIKYARKCKKCQIYMDKIHVAASPLHIFSA 680

[Close]

BLAST of Pay0011420 vs. ExPASy TrEMBL
Match: A0A5A7TRL7 (Ribonuclease H OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold284G00010 PE=4 SV=1)

HSP 1 Score: 478.8 bits (1231), Expect = 1.3e-131
Identity = 227/236 (96.19%), Postives = 232/236 (98.31%), Query Frame = 0


Query: 1    MGLQVACDMSIKKLKVLGDSMLVIHQVKEEWETRDAKLVPYSQYVTKLSQNFEKISFDHV 60
            MGL+VACDMSIKKLKVLGDSMLVIHQVKEEWETR AKLVPYSQYVTKLSQNFEKISFDHV
Sbjct: 1287 MGLRVACDMSIKKLKVLGDSMLVIHQVKEEWETRHAKLVPYSQYVTKLSQNFEKISFDHV 1346

Query: 61   PREDNRMADALATLAVMFDLNLEFELHPIQITKRDVPAYCMNVGNDNKPWYFDIKQYIKC 120
            PREDNRMADALATLA+MFDLNLEFELHPIQITKRDVPAYCMNVGNDNKPWYFDIKQYIKC
Sbjct: 1347 PREDNRMADALATLAMMFDLNLEFELHPIQITKRDVPAYCMNVGNDNKPWYFDIKQYIKC 1406

Query: 121  REYPYEASENDKRTISRLAMNFFLSGEVLYKRNHDMVLLRCVDEEEAKQIMTDIYEGICG 180
            REYPYEA ENDKRTI +LAMNFFLSGEV YKRNHDMVLLRCVDEEEAKQIMTDI+EGICG
Sbjct: 1407 REYPYEALENDKRTIRKLAMNFFLSGEVFYKRNHDMVLLRCVDEEEAKQIMTDIHEGICG 1466

Query: 181  THANGHMMARQILRSGYYWTTMESDCIKYARECKECQIYMDKIHVAASPLHILSAP 237
            THANGHMMARQILRSGYYWTTMESDCIKYARECK+CQIYMDKIHVAASPLHILSAP
Sbjct: 1467 THANGHMMARQILRSGYYWTTMESDCIKYARECKKCQIYMDKIHVAASPLHILSAP 1522

[Close]

BLAST of Pay0011420 vs. ExPASy TrEMBL
Match: A0A5A7T7R4 (Ribonuclease H OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold277G002820 PE=4 SV=1)

HSP 1 Score: 476.9 bits (1226), Expect = 5.0e-131
Identity = 228/236 (96.61%), Postives = 230/236 (97.46%), Query Frame = 0


Query: 1    MGLQVACDMSIKKLKVLGDSMLVIHQVKEEWETRDAKLVPYSQYVTKLSQNFEKISFDHV 60
            MGLQVACDMSIKKLKVLGDSMLVIHQVKEEWETR AKLVPYSQYVTKLSQNFEKISFDHV
Sbjct: 1415 MGLQVACDMSIKKLKVLGDSMLVIHQVKEEWETRHAKLVPYSQYVTKLSQNFEKISFDHV 1474

Query: 61   PREDNRMADALATLAVMFDLNLEFELHPIQITKRDVPAYCMNVGNDNKPWYFDIKQYIKC 120
            PREDNRMADALATLAVMFDLNLEFELHPIQITKRDVPAYCMNVGNDNKPWYFDIKQYIKC
Sbjct: 1475 PREDNRMADALATLAVMFDLNLEFELHPIQITKRDVPAYCMNVGNDNKPWYFDIKQYIKC 1534

Query: 121  REYPYEASENDKRTISRLAMNFFLSGEVLYKRNHDMVLLRCVDEEEAKQIMTDIYEGICG 180
            REYPYEASENDKRTI RLAMNFFLSGEVLYKRNHDMVLLRCVDEEEAKQIM DI+EGIC 
Sbjct: 1535 REYPYEASENDKRTIRRLAMNFFLSGEVLYKRNHDMVLLRCVDEEEAKQIMIDIHEGICE 1594

Query: 181  THANGHMMARQILRSGYYWTTMESDCIKYARECKECQIYMDKIHVAASPLHILSAP 237
            THANGHMMARQILRS YYWTTMESDCIKY RECK+CQIYMDKIHVAASPLHILSAP
Sbjct: 1595 THANGHMMARQILRSDYYWTTMESDCIKYVRECKKCQIYMDKIHVAASPLHILSAP 1650

[Close]

BLAST of Pay0011420 vs. NCBI nr
Match: KAA0036943.1 (uncharacterized protein E6C27_scaffold86G00190 [Cucumis melo var. makuwa])

HSP 1 Score: 485.7 bits (1249), Expect = 2.2e-133
Identity = 232/236 (98.31%), Postives = 233/236 (98.73%), Query Frame = 0


Query: 1   MGLQVACDMSIKKLKVLGDSMLVIHQVKEEWETRDAKLVPYSQYVTKLSQNFEKISFDHV 60
           MGLQVACDMSIKKLKVLGDSMLVIHQVKEEWETRDAKLVPYSQYVTKLSQ FEKISFDHV
Sbjct: 48  MGLQVACDMSIKKLKVLGDSMLVIHQVKEEWETRDAKLVPYSQYVTKLSQKFEKISFDHV 107

Query: 61  PREDNRMADALATLAVMFDLNLEFELHPIQITKRDVPAYCMNVGNDNKPWYFDIKQYIKC 120
           PREDNRMADALATLAVMFDLNLEFELHPIQITKRDVPAYCMNVGNDNKPWYFDIKQYIKC
Sbjct: 108 PREDNRMADALATLAVMFDLNLEFELHPIQITKRDVPAYCMNVGNDNKPWYFDIKQYIKC 167

Query: 121 REYPYEASENDKRTISRLAMNFFLSGEVLYKRNHDMVLLRCVDEEEAKQIMTDIYEGICG 180
           REYPYEASENDKRTI RLAMNFFLSGEVLYKRNHDMVLLRCVDEEEAKQIMTDIYEGICG
Sbjct: 168 REYPYEASENDKRTIRRLAMNFFLSGEVLYKRNHDMVLLRCVDEEEAKQIMTDIYEGICG 227

Query: 181 THANGHMMARQILRSGYYWTTMESDCIKYARECKECQIYMDKIHVAASPLHILSAP 237
           THANGHMMARQILRSGYYWTTMESDCIKYARECK+CQIYMDKIHVAAS LHILSAP
Sbjct: 228 THANGHMMARQILRSGYYWTTMESDCIKYARECKKCQIYMDKIHVAASSLHILSAP 283

[Close]

BLAST of Pay0011420 vs. NCBI nr
Match: KAA0036934.1 (uncharacterized protein E6C27_scaffold86G00070 [Cucumis melo var. makuwa])

HSP 1 Score: 484.6 bits (1246), Expect = 5.0e-133
Identity = 232/236 (98.31%), Postives = 233/236 (98.73%), Query Frame = 0


Query: 1   MGLQVACDMSIKKLKVLGDSMLVIHQVKEEWETRDAKLVPYSQYVTKLSQNFEKISFDHV 60
           MGLQVA DMSIKKLKVLGDSMLVIHQVKEEWE RDAKLVPYSQYVTKLSQNFEKISFDHV
Sbjct: 361 MGLQVAWDMSIKKLKVLGDSMLVIHQVKEEWEIRDAKLVPYSQYVTKLSQNFEKISFDHV 420

Query: 61  PREDNRMADALATLAVMFDLNLEFELHPIQITKRDVPAYCMNVGNDNKPWYFDIKQYIKC 120
           PREDNRMADALATLAVMFDLNLEFELHPIQITKRDVPAYCMNVGNDNKPWYFDIKQYIKC
Sbjct: 421 PREDNRMADALATLAVMFDLNLEFELHPIQITKRDVPAYCMNVGNDNKPWYFDIKQYIKC 480

Query: 121 REYPYEASENDKRTISRLAMNFFLSGEVLYKRNHDMVLLRCVDEEEAKQIMTDIYEGICG 180
           REYPYEASENDKRTI RLAMNFFLSGEVLYKRNHDMVLLRCVDEEEAKQIMTDIYEGICG
Sbjct: 481 REYPYEASENDKRTIRRLAMNFFLSGEVLYKRNHDMVLLRCVDEEEAKQIMTDIYEGICG 540

Query: 181 THANGHMMARQILRSGYYWTTMESDCIKYARECKECQIYMDKIHVAASPLHILSAP 237
           THANGHMMARQILRSGYYWTTMESDCIKYARECK+CQIYMDKIHVAASPLHILSAP
Sbjct: 541 THANGHMMARQILRSGYYWTTMESDCIKYARECKKCQIYMDKIHVAASPLHILSAP 596

[Close]

BLAST of Pay0011420 vs. NCBI nr
Match: TYK24459.1 (uncharacterized protein E5676_scaffold717G00160 [Cucumis melo var. makuwa])

HSP 1 Score: 479.9 bits (1234), Expect = 1.2e-131
Identity = 228/235 (97.02%), Postives = 231/235 (98.30%), Query Frame = 0


Query: 1   MGLQVACDMSIKKLKVLGDSMLVIHQVKEEWETRDAKLVPYSQYVTKLSQNFEKISFDHV 60
           MGLQVACDMSIKKLKVLGDSMLVIHQVKEEWETRDAKLVPYSQYVTKLSQNFEKISFDHV
Sbjct: 446 MGLQVACDMSIKKLKVLGDSMLVIHQVKEEWETRDAKLVPYSQYVTKLSQNFEKISFDHV 505

Query: 61  PREDNRMADALATLAVMFDLNLEFELHPIQITKRDVPAYCMNVGNDNKPWYFDIKQYIKC 120
           PREDNRMADALATLAVMFDLNLEFELHPIQITKRDVPAYCMNVGNDNKPWYFDIKQYIKC
Sbjct: 506 PREDNRMADALATLAVMFDLNLEFELHPIQITKRDVPAYCMNVGNDNKPWYFDIKQYIKC 565

Query: 121 REYPYEASENDKRTISRLAMNFFLSGEVLYKRNHDMVLLRCVDEEEAKQIMTDIYEGICG 180
           REYPYEASENDKR I RL MNFFLSGEVLYKRNHDMVLLRCVDEEEAKQIMTDI+EGICG
Sbjct: 566 REYPYEASENDKRAIRRLTMNFFLSGEVLYKRNHDMVLLRCVDEEEAKQIMTDIHEGICG 625

Query: 181 THANGHMMARQILRSGYYWTTMESDCIKYARECKECQIYMDKIHVAASPLHILSA 236
           THANGHMMARQILRSGYYWTTMESDCIKYAR+CK+CQIYMDKIHVAASPLHI SA
Sbjct: 626 THANGHMMARQILRSGYYWTTMESDCIKYARKCKKCQIYMDKIHVAASPLHIFSA 680

[Close]

BLAST of Pay0011420 vs. NCBI nr
Match: KAA0046213.1 (uncharacterized protein E6C27_scaffold284G00010 [Cucumis melo var. makuwa])

HSP 1 Score: 478.8 bits (1231), Expect = 2.7e-131
Identity = 227/236 (96.19%), Postives = 232/236 (98.31%), Query Frame = 0


Query: 1    MGLQVACDMSIKKLKVLGDSMLVIHQVKEEWETRDAKLVPYSQYVTKLSQNFEKISFDHV 60
            MGL+VACDMSIKKLKVLGDSMLVIHQVKEEWETR AKLVPYSQYVTKLSQNFEKISFDHV
Sbjct: 1287 MGLRVACDMSIKKLKVLGDSMLVIHQVKEEWETRHAKLVPYSQYVTKLSQNFEKISFDHV 1346

Query: 61   PREDNRMADALATLAVMFDLNLEFELHPIQITKRDVPAYCMNVGNDNKPWYFDIKQYIKC 120
            PREDNRMADALATLA+MFDLNLEFELHPIQITKRDVPAYCMNVGNDNKPWYFDIKQYIKC
Sbjct: 1347 PREDNRMADALATLAMMFDLNLEFELHPIQITKRDVPAYCMNVGNDNKPWYFDIKQYIKC 1406

Query: 121  REYPYEASENDKRTISRLAMNFFLSGEVLYKRNHDMVLLRCVDEEEAKQIMTDIYEGICG 180
            REYPYEA ENDKRTI +LAMNFFLSGEV YKRNHDMVLLRCVDEEEAKQIMTDI+EGICG
Sbjct: 1407 REYPYEALENDKRTIRKLAMNFFLSGEVFYKRNHDMVLLRCVDEEEAKQIMTDIHEGICG 1466

Query: 181  THANGHMMARQILRSGYYWTTMESDCIKYARECKECQIYMDKIHVAASPLHILSAP 237
            THANGHMMARQILRSGYYWTTMESDCIKYARECK+CQIYMDKIHVAASPLHILSAP
Sbjct: 1467 THANGHMMARQILRSGYYWTTMESDCIKYARECKKCQIYMDKIHVAASPLHILSAP 1522

[Close]

BLAST of Pay0011420 vs. NCBI nr
Match: KAA0037621.1 (uncharacterized protein E6C27_scaffold277G002820 [Cucumis melo var. makuwa])

HSP 1 Score: 476.9 bits (1226), Expect = 1.0e-130
Identity = 228/236 (96.61%), Postives = 230/236 (97.46%), Query Frame = 0


Query: 1    MGLQVACDMSIKKLKVLGDSMLVIHQVKEEWETRDAKLVPYSQYVTKLSQNFEKISFDHV 60
            MGLQVACDMSIKKLKVLGDSMLVIHQVKEEWETR AKLVPYSQYVTKLSQNFEKISFDHV
Sbjct: 1415 MGLQVACDMSIKKLKVLGDSMLVIHQVKEEWETRHAKLVPYSQYVTKLSQNFEKISFDHV 1474

Query: 61   PREDNRMADALATLAVMFDLNLEFELHPIQITKRDVPAYCMNVGNDNKPWYFDIKQYIKC 120
            PREDNRMADALATLAVMFDLNLEFELHPIQITKRDVPAYCMNVGNDNKPWYFDIKQYIKC
Sbjct: 1475 PREDNRMADALATLAVMFDLNLEFELHPIQITKRDVPAYCMNVGNDNKPWYFDIKQYIKC 1534

Query: 121  REYPYEASENDKRTISRLAMNFFLSGEVLYKRNHDMVLLRCVDEEEAKQIMTDIYEGICG 180
            REYPYEASENDKRTI RLAMNFFLSGEVLYKRNHDMVLLRCVDEEEAKQIM DI+EGIC 
Sbjct: 1535 REYPYEASENDKRTIRRLAMNFFLSGEVLYKRNHDMVLLRCVDEEEAKQIMIDIHEGICE 1594

Query: 181  THANGHMMARQILRSGYYWTTMESDCIKYARECKECQIYMDKIHVAASPLHILSAP 237
            THANGHMMARQILRS YYWTTMESDCIKY RECK+CQIYMDKIHVAASPLHILSAP
Sbjct: 1595 THANGHMMARQILRSDYYWTTMESDCIKYVRECKKCQIYMDKIHVAASPLHILSAP 1650

[Close]

BLAST of Pay0011420 vs. TAIR 10
Match: AT3G01410.1 (Polynucleotidyl transferase, ribonuclease H-like superfamily protein )

HSP 1 Score: 55.1 bits (131), Expect = 9.0e-08
Identity = 28/76 (36.84%), Postives = 40/76 (52.63%), Query Frame = 0


Query: 1   MGLQVACDMSIKKLKVLGDSMLVIHQVKEEWETRDAKLVPYSQYVTKLSQNFEKISFDHV 60
           +GL+ A D   K + VLGDSMLV  QV+  W+T   K+    +   +L  +F+     H+
Sbjct: 206 LGLRSALDKGFKNVHVLGDSMLVCMQVQGAWKTNHPKMAELCKQAKELMNSFKTFDIKHI 265

Query: 61  PREDNRMADALATLAV 77
            RE N  AD  A  A+
Sbjct: 266 AREKNSEADKQANSAI 281

[Close]

BLAST of Pay0011420 vs. TAIR 10
Match: AT3G01410.2 (Polynucleotidyl transferase, ribonuclease H-like superfamily protein )

HSP 1 Score: 55.1 bits (131), Expect = 9.0e-08
Identity = 28/76 (36.84%), Postives = 40/76 (52.63%), Query Frame = 0


Query: 1   MGLQVACDMSIKKLKVLGDSMLVIHQVKEEWETRDAKLVPYSQYVTKLSQNFEKISFDHV 60
           +GL+ A D   K + VLGDSMLV  QV+  W+T   K+    +   +L  +F+     H+
Sbjct: 206 LGLRSALDKGFKNVHVLGDSMLVCMQVQGAWKTNHPKMAELCKQAKELMNSFKTFDIKHI 265

Query: 61  PREDNRMADALATLAV 77
            RE N  AD  A  A+
Sbjct: 266 AREKNSEADKQANSAI 281

[Close]

BLAST of Pay0011420 vs. TAIR 10
Match: AT1G24090.1 (RNase H family protein )

HSP 1 Score: 43.5 bits (101), Expect = 2.7e-04
Identity = 26/76 (34.21%), Postives = 34/76 (44.74%), Query Frame = 0


Query: 1   MGLQVACDMSIKKLKVLGDSMLVIHQVKEEWETRDAKLVPYSQYVTKLSQNFEKISFDHV 60
           +GL+ A +   K +KV GDS LV  Q+K +W+     L    +    L          HV
Sbjct: 268 LGLKYAIEKGYKNIKVKGDSKLVCMQIKGQWKVNHEVLAKLHKEAKLLCNKCVSFEISHV 327

Query: 61  PREDNRMADALATLAV 77
            R  N  AD  A LAV
Sbjct: 328 LRNLNADADEQANLAV 343

The following BLAST results are available for this feature:

BLAST of Pay0011420 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q8K259	3.7e-06	27.83	Gypsy retrotransposon integrase-like protein 1 OS=Mus musculus OX=10090 GN=Gin1 ...	[more]

BLAST of Pay0011420 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7T1X2	1.1e-133	98.31	Ribonuclease H OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold86G00190 ...	[more]
A0A5A7T0A1	2.4e-133	98.31	Ribonuclease H OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold86G00070 ...	[more]
A0A5D3DMD2	5.9e-132	97.02	Ribonuclease H OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold717G00160...	[more]
A0A5A7TRL7	1.3e-131	96.19	Ribonuclease H OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold284G00010...	[more]
A0A5A7T7R4	5.0e-131	96.61	Ribonuclease H OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold277G00282...	[more]

BLAST of Pay0011420 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0036943.1	2.2e-133	98.31	uncharacterized protein E6C27_scaffold86G00190 [Cucumis melo var. makuwa]	[more]
KAA0036934.1	5.0e-133	98.31	uncharacterized protein E6C27_scaffold86G00070 [Cucumis melo var. makuwa]	[more]
TYK24459.1	1.2e-131	97.02	uncharacterized protein E5676_scaffold717G00160 [Cucumis melo var. makuwa]	[more]
KAA0046213.1	2.7e-131	96.19	uncharacterized protein E6C27_scaffold284G00010 [Cucumis melo var. makuwa]	[more]
KAA0037621.1	1.0e-130	96.61	uncharacterized protein E6C27_scaffold277G002820 [Cucumis melo var. makuwa]	[more]

BLAST of Pay0011420 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G01410.1	9.0e-08	36.84	Polynucleotidyl transferase, ribonuclease H-like superfamily protein	[more]
AT3G01410.2	9.0e-08	36.84	Polynucleotidyl transferase, ribonuclease H-like superfamily protein	[more]
AT1G24090.1	2.7e-04	34.21	RNase H family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (Payzawat) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	1.10.340.70		coord: 127..219 e-value: 7.0E-14 score: 53.8
None	No IPR available	PANTHER	PTHR24559:SF322	RNA-DIRECTED DNA POLYMERASE (REVERSE TRANSCRIPTASE), RIBONUCLEASE H-LIKE PROTEIN	coord: 1..232
None	No IPR available	PANTHER	PTHR24559	TRANSPOSON TY3-I GAG-POL POLYPROTEIN	coord: 1..232
IPR041588	Integrase zinc-binding domain	PFAM	PF17921	Integrase_H2C2	coord: 162..219 e-value: 2.6E-7 score: 30.6
IPR036397	Ribonuclease H superfamily	GENE3D	3.30.420.10		coord: 1..82 e-value: 1.9E-19 score: 71.9
IPR002156	Ribonuclease H domain	PFAM	PF13456	RVT_3	coord: 1..75 e-value: 9.6E-16 score: 57.7
IPR002156	Ribonuclease H domain	PROSITE	PS50879	RNASE_H	coord: 1..77 score: 8.913076
IPR012337	Ribonuclease H-like superfamily	SUPERFAMILY	53098	Ribonuclease H-like	coord: 2..78

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Pay0011420.1	Pay0011420.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0071897	DNA biosynthetic process
biological_process	GO:0015074	DNA integration
biological_process	GO:0006310	DNA recombination
biological_process	GO:0090502	RNA phosphodiester bond hydrolysis, endonucleolytic
cellular_component	GO:0030430	host cell cytoplasm
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003887	DNA-directed DNA polymerase activity
molecular_function	GO:0003723	RNA binding
molecular_function	GO:0004523	RNA-DNA hybrid ribonuclease activity
molecular_function	GO:0003676	nucleic acid binding