Pay0011221 (gene) Melon (Payzawat) v1

Overview


Name	Pay0011221
Type	gene
Organism	Cucumis melo L. var. inodorus cv. Payzawat (Melon (Payzawat) v1)
Description	Retrotransposon protein
Location	chr08: 6485090 .. 6486230 (+)
RNA-Seq Expression	Pay0011221
Synteny	Pay0011221

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGACCGAAGATGTTTCGCCATTCTGTGTCACCTACTGAGGACCATTGCTGGACTAACGTCGACGGAAGTCGTCGATGTTGAGGAGATGGTAGCAATGTTCCTCCACATTCTTGCGCACGATGTGAAAAATCGTGTCATTCAACGAGAGTTCATGCGGTCGGGCGAGACAATTTCCCGCCATTTCAACATGGTCTTGTTGGCTGTCATTCGACTTCATGACGAGCTGTTGAAAAAACCACAACCAGTGCCTAATGAATGCACAGATCAAAGATGGAGGTGGTTTGAGGTACACATTTGTCTCGAACTACGTACTTCCAACACAACGACGTTAGTTCTTCTCAATAATTTTTAGTTATGCGGTGCAGAATTGCCTAGGTGCATTAGATGGCACGTACATAAAAGTCAACGTTCCAGCAAGTGACCGGGCTAGGTATAGAACACGCAAGGGGGAGGTGGCCACAAATGTACTTGGCGTGTGTGACACGAAAGGAGATTTTGTTTACGTACTTGCCGGTTGGGAAGGATCAGCTGCGGACTCACGCATCCTCCGTGATGCCCTTTCAAGACCTAATAGGCTTAAGGTGCCCAAGGGTAAGTAACAAGGGCATTGTACCTATGAATGGAATTTTAGAAGTAACAACTGCGACATTTTAATCGTGCATTGTGATTACAGGCTATTACTACTTGGTTGATGCCGGGTACCCAAATGCGGAGGGTTTCCTGGCACCATACAGAGGGCAACGCTATCACTTACAAGAATGGCGTGGCCCTGAAAATGCACCTTCAACGTCCAAAGAGTTCTTCAATATGAAACATTCTTCTGCTCGTAATGTAATCGAAAGAGCATTCGGTGTCTTGAAGGGTCGATGGGCGATACTGCGGGGAAAGTCATACTATCCTGTAGAAGTTCAATGTCGCACAATACTCGCATGTTGTCTCCTCCACAACCTTATCAATAGGGAGATGACAAACTTTGATATAGAAGACAACATAGATGAGGTTGATTCCACCCACGCGACTACTGCTGCGGATGACATACGGATGACATACATTACATAGAAACGTCGAATGAGTGGAGTCAATGGAGGGACAACCTTGCAGAAGAAATGTTTACTGAATGGGAGTTGCGTAACCAATAG

mRNA sequence

ATGGACCGAAGATGTTTCGCCATTCTGTGTCACCTACTGAGGACCATTGCTGGACTAACGTCGACGGAAGTCGTCGATGTTGAGGAGATGGTAGCAATGTTCCTCCACATTCTTGCGCACGATGTGAAAAATCGTGTCATTCAACGAGAGTTCATGCGGTCGGGCGAGACAATTTCCCGCCATTTCAACATGGTCTTGTTGGCTGTCATTCGACTTCATGACGAGCTGTTGAAAAAACCACAACCAGTGCCTAATGAATGCACAGATCAAAGATGGAGGTGGTTTGAGAATTGCCTAGGTGCATTAGATGGCACGTACATAAAAGTCAACGTTCCAGCAAGTGACCGGGCTAGGTATAGAACACGCAAGGGGGAGGTGGCCACAAATGTACTTGGCGTGTGCTATTACTACTTGGTTGATGCCGGGTACCCAAATGCGGAGGGTTTCCTGGCACCATACAGAGGGCAACGCTATCACTTACAAGAATGGCGTGGCCCTGAAAATGCACCTTCAACGTCCAAAGAGTTCTTCAATATGAAACATTCTTCTGCTCGTAATGTAATCGAAAGAGCATTCGGTGTCTTGAAGGGTCGATGGGCGATACTGCGGGGAAAGGAGATGACAAACTTTGATATAGAAGACAACATAGATGAGGTTGATTCCACCCACGCGACTACTGCTTGGAGTCAATGGAGGGACAACCTTGCAGAAGAAATGTTTACTGAATGGGAGTTGCGTAACCAATAG

Coding sequence (CDS)

ATGGACCGAAGATGTTTCGCCATTCTGTGTCACCTACTGAGGACCATTGCTGGACTAACGTCGACGGAAGTCGTCGATGTTGAGGAGATGGTAGCAATGTTCCTCCACATTCTTGCGCACGATGTGAAAAATCGTGTCATTCAACGAGAGTTCATGCGGTCGGGCGAGACAATTTCCCGCCATTTCAACATGGTCTTGTTGGCTGTCATTCGACTTCATGACGAGCTGTTGAAAAAACCACAACCAGTGCCTAATGAATGCACAGATCAAAGATGGAGGTGGTTTGAGAATTGCCTAGGTGCATTAGATGGCACGTACATAAAAGTCAACGTTCCAGCAAGTGACCGGGCTAGGTATAGAACACGCAAGGGGGAGGTGGCCACAAATGTACTTGGCGTGTGCTATTACTACTTGGTTGATGCCGGGTACCCAAATGCGGAGGGTTTCCTGGCACCATACAGAGGGCAACGCTATCACTTACAAGAATGGCGTGGCCCTGAAAATGCACCTTCAACGTCCAAAGAGTTCTTCAATATGAAACATTCTTCTGCTCGTAATGTAATCGAAAGAGCATTCGGTGTCTTGAAGGGTCGATGGGCGATACTGCGGGGAAAGGAGATGACAAACTTTGATATAGAAGACAACATAGATGAGGTTGATTCCACCCACGCGACTACTGCTTGGAGTCAATGGAGGGACAACCTTGCAGAAGAAATGTTTACTGAATGGGAGTTGCGTAACCAATAG

Protein sequence

MDRRCFAILCHLLRTIAGLTSTEVVDVEEMVAMFLHILAHDVKNRVIQREFMRSGETISRHFNMVLLAVIRLHDELLKKPQPVPNECTDQRWRWFENCLGALDGTYIKVNVPASDRARYRTRKGEVATNVLGVCYYYLVDAGYPNAEGFLAPYRGQRYHLQEWRGPENAPSTSKEFFNMKHSSARNVIERAFGVLKGRWAILRGKEMTNFDIEDNIDEVDSTHATTAWSQWRDNLAEEMFTEWELRNQ

Homology

[Close]

BLAST of Pay0011221 vs. ExPASy TrEMBL
Match: A0A5A7TXW1 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold298G00370 PE=3 SV=1)

HSP 1 Score: 477.6 bits (1228), Expect = 3.1e-131
Identity = 248/322 (77.02%), Postives = 248/322 (77.02%), Query Frame = 0


Query: 1   MDRRCFAILCHLLRTIAGLTSTEVVDVEEMVAMFLHILAHDVKNRVIQREFMRSGETISR 60
           MDRRCFAILCHLLRTIAGLTSTEVVDVEEMVAMFLHILAHDVKNRVIQREFMRSGETISR
Sbjct: 67  MDRRCFAILCHLLRTIAGLTSTEVVDVEEMVAMFLHILAHDVKNRVIQREFMRSGETISR 126

Query: 61  HFNMVLLAVIRLHDELLKKPQPVPNECTDQRWRWFENCLGALDGTYIKVNVPASDRARYR 120
           HFNMVLLAVIRLHDELLKKPQPVPNECTDQRWRWFENCLGALDGTYIKVNVPASDRARYR
Sbjct: 127 HFNMVLLAVIRLHDELLKKPQPVPNECTDQRWRWFENCLGALDGTYIKVNVPASDRARYR 186

Query: 121 TRKGEVATNVLGVC--------------------------------------YYYLVDAG 180
           TRKGEVATNVLGVC                                      YYYLVDAG
Sbjct: 187 TRKGEVATNVLGVCDTKGDFVYVLAGWEGSAADSRILRDALSRPNRLKVPKGYYYLVDAG 246

Query: 181 YPNAEGFLAPYRGQRYHLQEWRGPENAPSTSKEFFNMKHSSARNVIERAFGVLKGRWAIL 240
           YPNAEGFLAPYRGQRYHLQEWRGPENAPSTSKEFFNMKHSSARNVIERAFGVLKGRWAIL
Sbjct: 247 YPNAEGFLAPYRGQRYHLQEWRGPENAPSTSKEFFNMKHSSARNVIERAFGVLKGRWAIL 306

Query: 241 RGK------------------------EMTNFDIEDNIDEVDSTHATTA----------- 249
           RGK                        EMTNFDIEDNIDEVDSTHATTA           
Sbjct: 307 RGKSYYPVEVQCRTILACCLLHNLINREMTNFDIEDNIDEVDSTHATTAADDIHYIETSN 366

[Close]

BLAST of Pay0011221 vs. ExPASy TrEMBL
Match: A0A5D3BDX0 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1112G00360 PE=3 SV=1)

HSP 1 Score: 476.1 bits (1224), Expect = 9.0e-131
Identity = 247/322 (76.71%), Postives = 248/322 (77.02%), Query Frame = 0


Query: 1   MDRRCFAILCHLLRTIAGLTSTEVVDVEEMVAMFLHILAHDVKNRVIQREFMRSGETISR 60
           MDRRCFAILCHLLRTIAGLTSTEVVDVEEMVAMFLHILAHDVKNRVIQREFMRSGETISR
Sbjct: 67  MDRRCFAILCHLLRTIAGLTSTEVVDVEEMVAMFLHILAHDVKNRVIQREFMRSGETISR 126

Query: 61  HFNMVLLAVIRLHDELLKKPQPVPNECTDQRWRWFENCLGALDGTYIKVNVPASDRARYR 120
           HFNMVLLAVIRLH+ELLKKPQPVPNECTDQRWRWFENCLGALDGTYIKVNVPASDRARYR
Sbjct: 127 HFNMVLLAVIRLHEELLKKPQPVPNECTDQRWRWFENCLGALDGTYIKVNVPASDRARYR 186

Query: 121 TRKGEVATNVLGVC--------------------------------------YYYLVDAG 180
           TRKGEVATNVLGVC                                      YYYLVDAG
Sbjct: 187 TRKGEVATNVLGVCDTKGDFVYVLAGWEGSAADSRILRDALSRPNRLKVPKGYYYLVDAG 246

Query: 181 YPNAEGFLAPYRGQRYHLQEWRGPENAPSTSKEFFNMKHSSARNVIERAFGVLKGRWAIL 240
           YPNAEGFLAPYRGQRYHLQEWRGPENAPSTSKEFFNMKHSSARNVIERAFGVLKGRWAIL
Sbjct: 247 YPNAEGFLAPYRGQRYHLQEWRGPENAPSTSKEFFNMKHSSARNVIERAFGVLKGRWAIL 306

Query: 241 RGK------------------------EMTNFDIEDNIDEVDSTHATTA----------- 249
           RGK                        EMTNFDIEDNIDEVDSTHATTA           
Sbjct: 307 RGKSYYPVEVQCRTILACCLLHNLINREMTNFDIEDNIDEVDSTHATTAADDIHYIETSN 366

[Close]

BLAST of Pay0011221 vs. ExPASy TrEMBL
Match: A0A5A7U476 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold264G00800 PE=3 SV=1)

HSP 1 Score: 471.9 bits (1213), Expect = 1.7e-129
Identity = 245/322 (76.09%), Postives = 247/322 (76.71%), Query Frame = 0


Query: 1   MDRRCFAILCHLLRTIAGLTSTEVVDVEEMVAMFLHILAHDVKNRVIQREFMRSGETISR 60
           MDRRCFAILCHLLRTIAGLTSTEVVDVEEMVAMFLHILAHDVKNRVIQREFMRSGETISR
Sbjct: 67  MDRRCFAILCHLLRTIAGLTSTEVVDVEEMVAMFLHILAHDVKNRVIQREFMRSGETISR 126

Query: 61  HFNMVLLAVIRLHDELLKKPQPVPNECTDQRWRWFENCLGALDGTYIKVNVPASDRARYR 120
           HFNMVLLAVIRLH+ELLKKPQPVPNECTDQRW+WFENCLGALDGTYIKVNVPASDRARYR
Sbjct: 127 HFNMVLLAVIRLHEELLKKPQPVPNECTDQRWKWFENCLGALDGTYIKVNVPASDRARYR 186

Query: 121 TRKGEVATNVLGVC--------------------------------------YYYLVDAG 180
           TRKGEVATNVLGVC                                      YYYLVDAG
Sbjct: 187 TRKGEVATNVLGVCDTKGDFVYVLAGWEGLAADSRILRDALSRPNRLKVPKGYYYLVDAG 246

Query: 181 YPNAEGFLAPYRGQRYHLQEWRGPENAPSTSKEFFNMKHSSARNVIERAFGVLKGRWAIL 240
           Y NAEGFLAPYRGQRYHLQEWRGPENAPSTSKEFFNMKHSSARNVIERAFGVLKGRWAIL
Sbjct: 247 YQNAEGFLAPYRGQRYHLQEWRGPENAPSTSKEFFNMKHSSARNVIERAFGVLKGRWAIL 306

Query: 241 RGK------------------------EMTNFDIEDNIDEVDSTHATTA----------- 249
           RGK                        EMTNFDIEDNIDEVDSTHATTA           
Sbjct: 307 RGKSYYPVEVQCRTILACCLLHNLINREMTNFDIEDNIDEVDSTHATTAADDIHYIETSN 366

[Close]

BLAST of Pay0011221 vs. ExPASy TrEMBL
Match: A0A5A7U9H2 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold678G00110 PE=3 SV=1)

HSP 1 Score: 470.7 bits (1210), Expect = 3.8e-129
Identity = 244/322 (75.78%), Postives = 245/322 (76.09%), Query Frame = 0


Query: 1   MDRRCFAILCHLLRTIAGLTSTEVVDVEEMVAMFLHILAHDVKNRVIQREFMRSGETISR 60
           MDRRCFAILCHLLRTIAGLTSTEVVDVEEMVAMFLHIL HDVKNRVIQREFMRSGETISR
Sbjct: 67  MDRRCFAILCHLLRTIAGLTSTEVVDVEEMVAMFLHILVHDVKNRVIQREFMRSGETISR 126

Query: 61  HFNMVLLAVIRLHDELLKKPQPVPNECTDQRWRWFENCLGALDGTYIKVNVPASDRARYR 120
           HFNMVLLAVIRLH+ELLKKPQPVPNECTDQRWRWFENCLGALDGTYIKVNVPASDRARYR
Sbjct: 127 HFNMVLLAVIRLHEELLKKPQPVPNECTDQRWRWFENCLGALDGTYIKVNVPASDRARYR 186

Query: 121 TRKGEVATNVLGVC--------------------------------------YYYLVDAG 180
           TRKGEVATNVLGVC                                      YYYLVDAG
Sbjct: 187 TRKGEVATNVLGVCDTKGDFVYVLAGWEGSAADSRILRDALSRPNRLKVPKGYYYLVDAG 246

Query: 181 YPNAEGFLAPYRGQRYHLQEWRGPENAPSTSKEFFNMKHSSARNVIERAFGVLKGRWAIL 240
           YPNAEGFLAPYRGQRYHLQEWRGPENAPSTSKEFFNMKHS ARNVIERAFGVLKGRWAIL
Sbjct: 247 YPNAEGFLAPYRGQRYHLQEWRGPENAPSTSKEFFNMKHSFARNVIERAFGVLKGRWAIL 306

Query: 241 RGK------------------------EMTNFDIEDNIDEVDSTHATTA----------- 249
           RGK                        EMTNFDIEDNIDEVDSTHATT            
Sbjct: 307 RGKSYYPVEVQCRTILACCLLHNLINREMTNFDIEDNIDEVDSTHATTTADDIHYIETSN 366

[Close]

BLAST of Pay0011221 vs. ExPASy TrEMBL
Match: A0A5A7VCK9 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold538G00700 PE=3 SV=1)

HSP 1 Score: 467.2 bits (1201), Expect = 4.2e-128
Identity = 243/322 (75.47%), Postives = 246/322 (76.40%), Query Frame = 0


Query: 1   MDRRCFAILCHLLRTIAGLTSTEVVDVEEMVAMFLHILAHDVKNRVIQREFMRSGETISR 60
           MDRRCFAILCHLLRTIAGLTSTEVVDVEEMVAMFL+ILAHDVKNRVIQREFMRSGETISR
Sbjct: 67  MDRRCFAILCHLLRTIAGLTSTEVVDVEEMVAMFLYILAHDVKNRVIQREFMRSGETISR 126

Query: 61  HFNMVLLAVIRLHDELLKKPQPVPNECTDQRWRWFENCLGALDGTYIKVNVPASDRARYR 120
           HFNMVLLAVIRLH+ELLKKPQPVPNECTDQRWRWFENCLGALDGTYIKVNVPASDRARYR
Sbjct: 127 HFNMVLLAVIRLHEELLKKPQPVPNECTDQRWRWFENCLGALDGTYIKVNVPASDRARYR 186

Query: 121 TRKGEVATNVLGVC--------------------------------------YYYLVDAG 180
           TRKGEVATNVLGVC                                      YYYLVDAG
Sbjct: 187 TRKGEVATNVLGVCDTKGDFVYVLAGWEGSAADSRILCDALSRPNRLKVPKGYYYLVDAG 246

Query: 181 YPNAEGFLAPYRGQRYHLQEWRGPENAPSTSKEFFNMKHSSARNVIERAFGVLKGRWAIL 240
           YPNAEGFLAPYRGQRYHLQEW GPENAPSTSKEFFNMKHSSARNVIERAFGVLKGRWAIL
Sbjct: 247 YPNAEGFLAPYRGQRYHLQEWCGPENAPSTSKEFFNMKHSSARNVIERAFGVLKGRWAIL 306

Query: 241 RGK------------------------EMTNFDIEDNIDEVDSTHATTA----------- 249
           RGK                        EMTNFDIEDNIDEVDSTHATT            
Sbjct: 307 RGKSYYPVEVQCCTILACCLLHNLINREMTNFDIEDNIDEVDSTHATTVADDIHYIETSN 366

[Close]

BLAST of Pay0011221 vs. NCBI nr
Match: KAA0046727.1 (retrotransposon protein [Cucumis melo var. makuwa] >KAA0052100.1 retrotransposon protein [Cucumis melo var. makuwa] >KAA0056032.1 retrotransposon protein [Cucumis melo var. makuwa] >KAA0059561.1 retrotransposon protein [Cucumis melo var. makuwa] >KAA0065497.1 retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 477.6 bits (1228), Expect = 6.4e-131
Identity = 248/322 (77.02%), Postives = 248/322 (77.02%), Query Frame = 0


Query: 1   MDRRCFAILCHLLRTIAGLTSTEVVDVEEMVAMFLHILAHDVKNRVIQREFMRSGETISR 60
           MDRRCFAILCHLLRTIAGLTSTEVVDVEEMVAMFLHILAHDVKNRVIQREFMRSGETISR
Sbjct: 67  MDRRCFAILCHLLRTIAGLTSTEVVDVEEMVAMFLHILAHDVKNRVIQREFMRSGETISR 126

Query: 61  HFNMVLLAVIRLHDELLKKPQPVPNECTDQRWRWFENCLGALDGTYIKVNVPASDRARYR 120
           HFNMVLLAVIRLHDELLKKPQPVPNECTDQRWRWFENCLGALDGTYIKVNVPASDRARYR
Sbjct: 127 HFNMVLLAVIRLHDELLKKPQPVPNECTDQRWRWFENCLGALDGTYIKVNVPASDRARYR 186

Query: 121 TRKGEVATNVLGVC--------------------------------------YYYLVDAG 180
           TRKGEVATNVLGVC                                      YYYLVDAG
Sbjct: 187 TRKGEVATNVLGVCDTKGDFVYVLAGWEGSAADSRILRDALSRPNRLKVPKGYYYLVDAG 246

Query: 181 YPNAEGFLAPYRGQRYHLQEWRGPENAPSTSKEFFNMKHSSARNVIERAFGVLKGRWAIL 240
           YPNAEGFLAPYRGQRYHLQEWRGPENAPSTSKEFFNMKHSSARNVIERAFGVLKGRWAIL
Sbjct: 247 YPNAEGFLAPYRGQRYHLQEWRGPENAPSTSKEFFNMKHSSARNVIERAFGVLKGRWAIL 306

Query: 241 RGK------------------------EMTNFDIEDNIDEVDSTHATTA----------- 249
           RGK                        EMTNFDIEDNIDEVDSTHATTA           
Sbjct: 307 RGKSYYPVEVQCRTILACCLLHNLINREMTNFDIEDNIDEVDSTHATTAADDIHYIETSN 366

[Close]

BLAST of Pay0011221 vs. NCBI nr
Match: KAA0035620.1 (retrotransposon protein [Cucumis melo var. makuwa] >KAA0038121.1 retrotransposon protein [Cucumis melo var. makuwa] >KAA0041646.1 retrotransposon protein [Cucumis melo var. makuwa] >KAA0047363.1 retrotransposon protein [Cucumis melo var. makuwa] >KAA0048378.1 retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 476.1 bits (1224), Expect = 1.9e-130
Identity = 247/322 (76.71%), Postives = 248/322 (77.02%), Query Frame = 0


Query: 1   MDRRCFAILCHLLRTIAGLTSTEVVDVEEMVAMFLHILAHDVKNRVIQREFMRSGETISR 60
           MDRRCFAILCHLLRTIAGLTSTEVVDVEEMVAMFLHILAHDVKNRVIQREFMRSGETISR
Sbjct: 67  MDRRCFAILCHLLRTIAGLTSTEVVDVEEMVAMFLHILAHDVKNRVIQREFMRSGETISR 126

Query: 61  HFNMVLLAVIRLHDELLKKPQPVPNECTDQRWRWFENCLGALDGTYIKVNVPASDRARYR 120
           HFNMVLLAVIRLH+ELLKKPQPVPNECTDQRWRWFENCLGALDGTYIKVNVPASDRARYR
Sbjct: 127 HFNMVLLAVIRLHEELLKKPQPVPNECTDQRWRWFENCLGALDGTYIKVNVPASDRARYR 186

Query: 121 TRKGEVATNVLGVC--------------------------------------YYYLVDAG 180
           TRKGEVATNVLGVC                                      YYYLVDAG
Sbjct: 187 TRKGEVATNVLGVCDTKGDFVYVLAGWEGSAADSRILRDALSRPNRLKVPKGYYYLVDAG 246

Query: 181 YPNAEGFLAPYRGQRYHLQEWRGPENAPSTSKEFFNMKHSSARNVIERAFGVLKGRWAIL 240
           YPNAEGFLAPYRGQRYHLQEWRGPENAPSTSKEFFNMKHSSARNVIERAFGVLKGRWAIL
Sbjct: 247 YPNAEGFLAPYRGQRYHLQEWRGPENAPSTSKEFFNMKHSSARNVIERAFGVLKGRWAIL 306

Query: 241 RGK------------------------EMTNFDIEDNIDEVDSTHATTA----------- 249
           RGK                        EMTNFDIEDNIDEVDSTHATTA           
Sbjct: 307 RGKSYYPVEVQCRTILACCLLHNLINREMTNFDIEDNIDEVDSTHATTAADDIHYIETSN 366

[Close]

BLAST of Pay0011221 vs. NCBI nr
Match: KAA0048361.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 471.9 bits (1213), Expect = 3.5e-129
Identity = 245/322 (76.09%), Postives = 247/322 (76.71%), Query Frame = 0


Query: 1   MDRRCFAILCHLLRTIAGLTSTEVVDVEEMVAMFLHILAHDVKNRVIQREFMRSGETISR 60
           MDRRCFAILCHLLRTIAGLTSTEVVDVEEMVAMFLHILAHDVKNRVIQREFMRSGETISR
Sbjct: 67  MDRRCFAILCHLLRTIAGLTSTEVVDVEEMVAMFLHILAHDVKNRVIQREFMRSGETISR 126

Query: 61  HFNMVLLAVIRLHDELLKKPQPVPNECTDQRWRWFENCLGALDGTYIKVNVPASDRARYR 120
           HFNMVLLAVIRLH+ELLKKPQPVPNECTDQRW+WFENCLGALDGTYIKVNVPASDRARYR
Sbjct: 127 HFNMVLLAVIRLHEELLKKPQPVPNECTDQRWKWFENCLGALDGTYIKVNVPASDRARYR 186

Query: 121 TRKGEVATNVLGVC--------------------------------------YYYLVDAG 180
           TRKGEVATNVLGVC                                      YYYLVDAG
Sbjct: 187 TRKGEVATNVLGVCDTKGDFVYVLAGWEGLAADSRILRDALSRPNRLKVPKGYYYLVDAG 246

Query: 181 YPNAEGFLAPYRGQRYHLQEWRGPENAPSTSKEFFNMKHSSARNVIERAFGVLKGRWAIL 240
           Y NAEGFLAPYRGQRYHLQEWRGPENAPSTSKEFFNMKHSSARNVIERAFGVLKGRWAIL
Sbjct: 247 YQNAEGFLAPYRGQRYHLQEWRGPENAPSTSKEFFNMKHSSARNVIERAFGVLKGRWAIL 306

Query: 241 RGK------------------------EMTNFDIEDNIDEVDSTHATTA----------- 249
           RGK                        EMTNFDIEDNIDEVDSTHATTA           
Sbjct: 307 RGKSYYPVEVQCRTILACCLLHNLINREMTNFDIEDNIDEVDSTHATTAADDIHYIETSN 366

[Close]

BLAST of Pay0011221 vs. NCBI nr
Match: KAA0051057.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 470.7 bits (1210), Expect = 7.8e-129
Identity = 244/322 (75.78%), Postives = 245/322 (76.09%), Query Frame = 0


Query: 1   MDRRCFAILCHLLRTIAGLTSTEVVDVEEMVAMFLHILAHDVKNRVIQREFMRSGETISR 60
           MDRRCFAILCHLLRTIAGLTSTEVVDVEEMVAMFLHIL HDVKNRVIQREFMRSGETISR
Sbjct: 67  MDRRCFAILCHLLRTIAGLTSTEVVDVEEMVAMFLHILVHDVKNRVIQREFMRSGETISR 126

Query: 61  HFNMVLLAVIRLHDELLKKPQPVPNECTDQRWRWFENCLGALDGTYIKVNVPASDRARYR 120
           HFNMVLLAVIRLH+ELLKKPQPVPNECTDQRWRWFENCLGALDGTYIKVNVPASDRARYR
Sbjct: 127 HFNMVLLAVIRLHEELLKKPQPVPNECTDQRWRWFENCLGALDGTYIKVNVPASDRARYR 186

Query: 121 TRKGEVATNVLGVC--------------------------------------YYYLVDAG 180
           TRKGEVATNVLGVC                                      YYYLVDAG
Sbjct: 187 TRKGEVATNVLGVCDTKGDFVYVLAGWEGSAADSRILRDALSRPNRLKVPKGYYYLVDAG 246

Query: 181 YPNAEGFLAPYRGQRYHLQEWRGPENAPSTSKEFFNMKHSSARNVIERAFGVLKGRWAIL 240
           YPNAEGFLAPYRGQRYHLQEWRGPENAPSTSKEFFNMKHS ARNVIERAFGVLKGRWAIL
Sbjct: 247 YPNAEGFLAPYRGQRYHLQEWRGPENAPSTSKEFFNMKHSFARNVIERAFGVLKGRWAIL 306

Query: 241 RGK------------------------EMTNFDIEDNIDEVDSTHATTA----------- 249
           RGK                        EMTNFDIEDNIDEVDSTHATT            
Sbjct: 307 RGKSYYPVEVQCRTILACCLLHNLINREMTNFDIEDNIDEVDSTHATTTADDIHYIETSN 366

[Close]

BLAST of Pay0011221 vs. NCBI nr
Match: KAA0065893.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 467.2 bits (1201), Expect = 8.6e-128
Identity = 243/322 (75.47%), Postives = 246/322 (76.40%), Query Frame = 0


Query: 1   MDRRCFAILCHLLRTIAGLTSTEVVDVEEMVAMFLHILAHDVKNRVIQREFMRSGETISR 60
           MDRRCFAILCHLLRTIAGLTSTEVVDVEEMVAMFL+ILAHDVKNRVIQREFMRSGETISR
Sbjct: 67  MDRRCFAILCHLLRTIAGLTSTEVVDVEEMVAMFLYILAHDVKNRVIQREFMRSGETISR 126

Query: 61  HFNMVLLAVIRLHDELLKKPQPVPNECTDQRWRWFENCLGALDGTYIKVNVPASDRARYR 120
           HFNMVLLAVIRLH+ELLKKPQPVPNECTDQRWRWFENCLGALDGTYIKVNVPASDRARYR
Sbjct: 127 HFNMVLLAVIRLHEELLKKPQPVPNECTDQRWRWFENCLGALDGTYIKVNVPASDRARYR 186

Query: 121 TRKGEVATNVLGVC--------------------------------------YYYLVDAG 180
           TRKGEVATNVLGVC                                      YYYLVDAG
Sbjct: 187 TRKGEVATNVLGVCDTKGDFVYVLAGWEGSAADSRILCDALSRPNRLKVPKGYYYLVDAG 246

Query: 181 YPNAEGFLAPYRGQRYHLQEWRGPENAPSTSKEFFNMKHSSARNVIERAFGVLKGRWAIL 240
           YPNAEGFLAPYRGQRYHLQEW GPENAPSTSKEFFNMKHSSARNVIERAFGVLKGRWAIL
Sbjct: 247 YPNAEGFLAPYRGQRYHLQEWCGPENAPSTSKEFFNMKHSSARNVIERAFGVLKGRWAIL 306

Query: 241 RGK------------------------EMTNFDIEDNIDEVDSTHATTA----------- 249
           RGK                        EMTNFDIEDNIDEVDSTHATT            
Sbjct: 307 RGKSYYPVEVQCCTILACCLLHNLINREMTNFDIEDNIDEVDSTHATTVADDIHYIETSN 366

[Close]

BLAST of Pay0011221 vs. TAIR 10
Match: AT1G43722.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G28730.1); Has 924 Blast hits to 912 proteins in 109 species: Archae - 0; Bacteria - 0; Metazoa - 222; Fungi - 31; Plants - 661; Viruses - 0; Other Eukaryotes - 10 (source: NCBI BLink). )

HSP 1 Score: 117.9 bits (294), Expect = 1.2e-26
Identity = 81/250 (32.40%), Postives = 112/250 (44.80%), Query Frame = 0


Query: 1   MDRRCFAILCHLLRTIAGLTSTEVVDVEEMVAMFLHILAHDVKNRVIQREFMRSGETISR 60
           M   CF  LC++L+T   L  T  + +EE VAMFL I  H+   R +   F R+ ET+ R
Sbjct: 72  MSLPCFTTLCNMLQTNYDLQPTLNISIEESVAMFLRICGHNEVYRDVGLRFGRNQETVQR 131

Query: 61  HFNMVLLAVIRLHDELLKKP-----QPVPNEC-TDQR-WRWFENCLGALDGTYIKVNVPA 120
            F  VL A   L  + ++ P       +P     DQR W +F   +GA+DGT++ V V  
Sbjct: 132 KFREVLTATELLACDYIRTPTRQELYRIPERLQVDQRYWPYFSGFVGAMDGTHVCVKVKP 191

Query: 121 SDRARYRTRKGEVATNVLGVC--------------------------------------- 180
             +  Y  R    + N++ +C                                       
Sbjct: 192 DLQGMYWNRHDNASLNIMAICDLKMLFTYIWNGAPGSCYDTAVLQIAQQSDSEFPLPPSE 251

Query: 181 YYYLVDAGYPNAEGFLAPYRGQ-----RYHL-QEWRGPENAPSTSKEFFNMKHSSARNVI 199
            YYLVD+GYPN +G LAPYR       RYH+ Q + GP   P    E FN  H+S R+VI
Sbjct: 252 KYYLVDSGYPNKQGLLAPYRSSRNRVVRYHMSQFYYGPR--PRNKHELFNQCHTSLRSVI 311

[Close]

BLAST of Pay0011221 vs. TAIR 10
Match: AT5G41980.1 (CONTAINS InterPro DOMAIN/s: Putative harbinger transposase-derived nuclease (InterPro:IPR006912); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G43722.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). )

HSP 1 Score: 116.7 bits (291), Expect = 2.7e-26
Identity = 78/241 (32.37%), Postives = 108/241 (44.81%), Query Frame = 0


Query: 1   MDRRCFAILCHLLRTIAGLTSTEVVDVEEMVAMFLHILAHDVKNRVIQREFMRSGETISR 60
           MD+  F  LC LL+T   L  T  + +E  +A+FL I+ H+++ R +Q  F  SGETISR
Sbjct: 48  MDKPVFYKLCDLLQTRGLLRHTNRIKIEAQLAIFLFIIGHNLRTRAVQELFCYSGETISR 107

Query: 61  HFNMVLLAVIRLHDELLKKPQPVPNECT-DQRWRWFENCLGALDGTYIKVNVPASDRARY 120
           HFN VL AVI +  +     QP  N  T +    +F++C+G +D  +I V V   ++  +
Sbjct: 108 HFNNVLNAVIAISKDFF---QPNSNSDTLENDDPYFKDCVGVVDSFHIPVMVGVDEQGPF 167

Query: 121 RTRKGEVATNVLGVC--------------------------------------YYYLVDA 180
           R   G +  NVL                                          YY+VD 
Sbjct: 168 RNGNGLLTQNVLAASSFDLRFNYVLAGWEGSASDQQVLNAALTRRNKLQVPQGKYYIVDN 227

Query: 181 GYPNAEGFLAPYRGQRYHLQEWRGPENAPSTSKEFFNMKHSSARNVIERAFGVLKGRWAI 203
            YPN  GF+APY G            N+   +KE FN +H      I R FG LK R+ I
Sbjct: 228 KYPNLPGFIAPYHGV---------STNSREEAKEMFNERHKLLHRAIHRTFGALKERFPI 276

[Close]

BLAST of Pay0011221 vs. TAIR 10
Match: AT5G35695.1 (CONTAINS InterPro DOMAIN/s: Putative harbinger transposase-derived nuclease (InterPro:IPR006912); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G41980.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 85.5 bits (210), Expect = 6.6e-17
Identity = 38/68 (55.88%), Postives = 47/68 (69.12%), Query Frame = 0


Query: 136 YYLVDAGYPNAEGFLAPYRGQRYHLQEWRGPENAPSTSKEFFNMKHSSARNVIERAFGVL 195
           +YLVD G+ N   FLAP+RG RYHLQE+ G    P T  E FN++H S RNVIER FG+ 
Sbjct: 49  FYLVDCGFANRLNFLAPFRGVRYHLQEFAGQRRDPETPHELFNLRHVSLRNVIERIFGIF 108

Query: 196 KGRWAILR 204
           K R+AI +
Sbjct: 109 KSRFAIFK 116

[Close]

BLAST of Pay0011221 vs. TAIR 10
Match: AT4G10890.1 (unknown protein; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF2439 (InterPro:IPR018838); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G43722.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 77.0 bits (188), Expect = 2.3e-14
Identity = 61/208 (29.33%), Postives = 89/208 (42.79%), Query Frame = 0


Query: 18  GLTSTEVVDVEEMVAMFLHILAHDVKNRVIQREFMRSGETISRHFNMVLLAVIRLHDELL 77
           GL   E V +EE VAMFL  +  +   R I   + +S   + R  + VL A+++   + L
Sbjct: 7   GLQELENVYLEESVAMFLEEVDKNRTVRDIVARYQQSLNVVKRKIDDVLSALLKFAADTL 66

Query: 78  KKPQPVPNECTDQRWRWFENCLGALDGTYIKVNVPASDRARYRTRKGEVATNVLGVCYYY 137
           K  +    +                   Y   N   S     R               YY
Sbjct: 67  KSQESHDTKVL----------------KYCARNESFSPHPSNRK--------------YY 126

Query: 138 LVDAGYPNAEGFLAPYRGQRYHLQEWRGPENAPSTSKEFFNMKHSSARNVIERAFGVLKG 197
           LV++ YP   G+L P+R   YHL ++ G    P T +E FN KH   R+VI+R FGV K 
Sbjct: 127 LVNSVYPTTTGYLGPHRRILYHLGQF-GRGGPPVTVQELFNRKHLDLRSVIDRTFGVWKA 182

Query: 198 RWAILRGKEMTNFDIEDNIDEVDSTHAT 226
           +W IL      N +I  N+ + +  HA+
Sbjct: 187 KWRIL-DHTCKNVNIAINVTKTNINHAS 182

[Close]

BLAST of Pay0011221 vs. TAIR 10
Match: AT5G28730.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G43722.1); Has 496 Blast hits to 496 proteins in 68 species: Archae - 0; Bacteria - 0; Metazoa - 3; Fungi - 23; Plants - 470; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 65.5 bits (158), Expect = 7.0e-11
Identity = 70/265 (26.42%), Postives = 109/265 (41.13%), Query Frame = 0


Query: 1   MDRRCFAILCHLLRTIAGLTSTEVVDVEEMVAMFLHILAHDVKNRVIQREFMRSGETISR 60
           M    F  LC +L    GL S+  + ++E VA+FL I A +   R I   F  + ETI R
Sbjct: 30  MSSEAFTQLCEILHGKYGLQSSTNISLDESVAIFLIICASNDTQRDIALRFGHAQETIWR 89

Query: 61  HFNMVLLAVIRLHDELLK-----KPQPVPNECTD--QRWRWFENCLGA----------LD 120
            F+ VL A+ RL  E ++     + + + N   D  + W +  + LG           LD
Sbjct: 90  KFHDVLKAMERLAVEYIRPRKVEELRAISNRLQDDTRYWPFLMDLLGIASFNVLAICDLD 149

Query: 121 --GTYIKVNVPASD---RARYRTRKGEVATNVLGVCYYYLVDAGYPNAEGFLAPYRGQRY 180
              TY  V +  S    R        +   +V     YYLVD+GY N  G+LAPYR +  
Sbjct: 150 MLFTYCFVGMAGSTHDARVLSAAISDDPLFHVPPDSKYYLVDSGYANKRGYLAPYRREHR 209

Query: 181 HLQEWRGPENAPSTSKEFFNMKHSSARNVIERAFGVLKGRWAILRGKE--MTNFDIEDNI 240
             Q+          S  F  +      N+ +  F  +     +++         D  D I
Sbjct: 210 EAQD--------IISNNFLTVNLFETHNIKDYDFDNVDSENNVVQAPHDATDEQDNNDGI 269

Query: 241 DEVDSTHATTAWSQWRDNLAEEMFT 242
           +  +S+ A       RD +AE +++
Sbjct: 270 EIEESSEAEMYMRIVRDQIAEHIWS 286

The following BLAST results are available for this feature:

BLAST of Pay0011221 vs.


Match Name	E-value	Identity	Description

BLAST of Pay0011221 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7TXW1	3.1e-131	77.02	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5D3BDX0	9.0e-131	76.71	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5A7U476	1.7e-129	76.09	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A5A7U9H2	3.8e-129	75.78	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A5A7VCK9	4.2e-128	75.47	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]

BLAST of Pay0011221 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0046727.1	6.4e-131	77.02	retrotransposon protein [Cucumis melo var. makuwa] >KAA0052100.1 retrotransposon...	[more]
KAA0035620.1	1.9e-130	76.71	retrotransposon protein [Cucumis melo var. makuwa] >KAA0038121.1 retrotransposon...	[more]
KAA0048361.1	3.5e-129	76.09	retrotransposon protein [Cucumis melo var. makuwa]	[more]
KAA0051057.1	7.8e-129	75.78	retrotransposon protein [Cucumis melo var. makuwa]	[more]
KAA0065893.1	8.6e-128	75.47	retrotransposon protein [Cucumis melo var. makuwa]	[more]

BLAST of Pay0011221 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G43722.1	1.2e-26	32.40	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]
AT5G41980.1	2.7e-26	32.37	CONTAINS InterPro DOMAIN/s: Putative harbinger transposase-derived nuclease (Int...	[more]
AT5G35695.1	6.6e-17	55.88	CONTAINS InterPro DOMAIN/s: Putative harbinger transposase-derived nuclease (Int...	[more]
AT4G10890.1	2.3e-14	29.33	unknown protein; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF2439...	[more]
AT5G28730.1	7.0e-11	26.42	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (Payzawat) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR027806	Harbinger transposase-derived nuclease domain	PFAM	PF13359	DDE_Tnp_4	coord: 136..205 e-value: 9.0E-10 score: 38.4
None	No IPR available	PANTHER	PTHR22930:SF201	NUCLEASE HARBI1-LIKE PROTEIN	coord: 1..134 coord: 136..209
None	No IPR available	PANTHER	PTHR22930	UNCHARACTERIZED	coord: 1..134 coord: 136..209

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Pay0011221.1	Pay0011221.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0046872	metal ion binding