Pay0011130 (gene) Melon (Payzawat) v1

Overview


Name	Pay0011130
Type	gene
Organism	Cucumis melo L. var. inodorus cv. Payzawat (Melon (Payzawat) v1)
Description	small EDRK-rich factor 2
Location	chr05: 12050600 .. 12052714 (-)
RNA-Seq Expression	Pay0011130
Synteny	Pay0011130

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AGGAATACAAGTTGGGGCTCTCACTATATAAAGAATCTCCGATTCCCCTGTTCTTTCGATTACCTTTGGTTGACTCTCTGTTTTTAGAGATTGGCATTCTTCGTTTCTTCGGCTAAGTCTCCACCCCAATCCTCCAATTCCACATCTTTCTTCACCACCCACTTCATTAATCTCCCTCCAATGACTCATATCCTTCTCAATCTTCAATTCTTTTTCATCTTTTTTATGTCGATTTTCCATGAACTTGTGCTTTCTTTTCTTTTCTTTTCTTTTCTTTTAAGGCGTTTTTGATTCATTGATTTTGTAAATTTCTTCTTCTTTCAAGTTTGTTTCCCTTGACTCAGATCTCTACGTGGAAACCAGAGGGAGAAAGACCGAGAAAGGGCTCAGGCTCGCAACGGTGGCAAGGGTAAAACCAAAGACGATGGTTTGACTCCCGAGCAGCGCCGTGAAAGGTTTTCTTTTATCTTCTATCCTCTACCTTCGTTAATTTTCCCTTTTGTTTCGATCTGGGTTTCTTTTTATTCGTTTTCGATTTTGGTTTAGAGATGCTAAGGCGCTGCAAGAAAAAGCCGCGAAGAAGGCGGCTCAGGCGGCATCAGGAGGTAATTCATCCGGAGGTAAAGCTAGCACTAAGAAGTAAAATGGTCCTGGGTTTAGAATCATGGATTATGTTGATTTTTCTTAGCTTTGTTCTTGTTGGAACGCTGAGATCTCGTGGTTCTTAGACTGTTTGATATTGGAGGAGTAACCTTCATATGTTTCAGTAATGTGAATTGATATATGTATTATGCTGTCAACGTTCATTGTTGATTATTGTTTTTCATCATCTTAGTACTCTTGATCTTTACTTCTGTTGAGGTAACTATGCTGTCAATTGCGGATTTTGTTGAGATTGGATCCTAATGAAAAATTCTTGTTCATATGTTATGATATCTCACTGGTTCTTTTGCCATTATTAATTTTGGGGTAATAGCAGATAGTTATGATCCTATCTTTGAGTTAGGTTTCTGTAGTTACAAATTAATGTGATAAAATAAAACAAATTGTCATTAAAGTAATTCAAAGAACAAAAGCAAGGGAAAAACTAGAGTAGGAGATTTCTATTGTCAATAATTTAGTCCTTAAACCCTAGAGAGACTAGAGAGGCATTGAATTGGGCCAGATCCCACATCTTTTTCCTAAAGTCAGCACCTTTGAAATTCCTCTGGTTGATTTCCAACTTTGTGTAAACAGAATAACCAACAAAAAGGACTAGCTAAGGTACAACACTTTAGATTCTAATCTTATGCCAATACTGACCAAAATCCTCTTCCCGTCCAACTTAACATAATCCTTTGCCACATTGCTTTAGGTTCTAAAGGGATACTTTCGTAATTCACTGGCTAGAGAGGACATGCTTCTTGTGGGATCAATTTTCTACACAACTTGCCATTCTCACACATTTTCATGAAATAACCTCACACCAAACCAAATGAGAACTACCCCTCTTTATCTACTCTTTGTGAAAAAGAAAAACCTCATAATATTCTTCAATTTATTGCAAATTGAGGATGAGTGCTAAAGAAATACTGGATCAAAGAGACTCAAAAAAGGTTCTTCCATGCAAATAAGCATTTTTTAACCCTTTTTTATTTTATATTATTTTTTGTGAGAACTGTTTTCGAACCTTCAACCATTAACCCTAGAACAATTAAGATCTTGGATTATGACTCAAGGGGAAGTTTAGAAAAAGGTTGGTAAGACATCTCACACCCACTAAATTAGCCGGCAACATTAGTGTTGTTTGACTTCAAATTTCCCAACTACAGGTCTTCAATACCGCAACATTAGTATAAGATTGTGATTAATATCATCAAAGGTATTCTGTTGCGCCCCAGGCCAAGGATTTGGGATCCAGATTCATCTAACACGGGTCCTTTCATCATGCTTTGTACTAACATGCATCTTAGGAAAATTCTTGGGAGGTCACTCAACGAAGAATTGTTGGAGTTCCTATGATTGAGCCATCGAAAAAGGATGATGCACCTTGTTTAGCTTTCTATAGTCAATACATAGGTGTAGTGACCAATCTTTTCTCTTCACATAAAAAACTGGTGCATCCTAGGGAAACAC

mRNA sequence

AGGAATACAAGTTGGGGCTCTCACTATATAAAGAATCTCCGATTCCCCTGTTCTTTCGATTACCTTTGGTTGACTCTCTGTTTTTAGAGATTGGCATTCTTCGTTTCTTCGGCTAAGTCTCCACCCCAATCCTCCAATTCCACATCTTTCTTCACCACCCACTTCATTAATCTCCCTCCAATGACTCGTGGAAACCAGAGGGAGAAAGACCGAGAAAGGGCTCAGGCTCGCAACGGTGGCAAGGGTAAAACCAAAGACGATGGTTTGACTCCCGAGCAGCGCCGTGAAAGAGATGCTAAGGCGCTGCAAGAAAAAGCCGCGAAGAAGGCGGCTCAGGCGGCATCAGGAGGTAATTCATCCGGAGGTAAAGCTAGCACTAAGAAGTAAAATGGTCCTGGGTTTAGAATCATGGATTATGTTGATTTTTCTTAGCTTTGTTCTTGTTGGAACGCTGAGATCTCGTGGTTCTTAGACTGTTTGATATTGGAGGAGTAACCTTCATATGTTTCAGTAATGTGAATTGATATATGTATTATGCTGTCAACGTTCATTGTTGATTATTGTTTTTCATCATCTTAGTACTCTTGATCTTTACTTCTGTTGAGGTAACTATGCTGTCAATTGCGGATTTTGTTGAGATTGGATCCTAATGAAAAATTCTTGTTCATATGTTATGATATCTCACTGGTTCTTTTGCCATTATTAATTTTGGGGTAATAGCAGATAGTTATGATCCTATCTTTGAGTTAGGTTTCTGTAGTTACAAATTAATGTGATAAAATAAAACAAATTGTCATTAAAGTAATTCAAAGAACAAAAGCAAGGGAAAAACTAGAGTAGGAGATTTCTATTGTCAATAATTTAGTCCTTAAACCCTAGAGAGACTAGAGAGGCATTGAATTGGGCCAGATCCCACATCTTTTTCCTAAAGTCAGCACCTTTGAAATTCCTCTGGTTGATTTCCAACTTTGTGTAAACAGAATAACCAACAAAAAGGACTAGCTAAGGTACAACACTTTAGATTCTAATCTTATGCCAATACTGACCAAAATCCTCTTCCCGTCCAACTTAACATAATCCTTTGCCACATTGCTTTAGGTTCTAAAGGGATACTTTCGTAATTCACTGGCTAGAGAGGACATGCTTCTTGTGGGATCAATTTTCTACACAACTTGCCATTCTCACACATTTTCATGAAATAACCTCACACCAAACCAAATGAGAACTACCCCTCTTTATCTACTCTTTGTGAAAAAGAAAAACCTCATAATATTCTTCAATTTATTGCAAATTGAGGATGAGTGCTAAAGAAATACTGGATCAAAGAGACTCAAAAAAGGTTCTTCCATGCAAATAAGCATTTTTTAACCCTTTTTTATTTTATATTATTTTTTGTGAGAACTGTTTTCGAACCTTCAACCATTAACCCTAGAACAATTAAGATCTTGGATTATGACTCAAGGGGAAGTTTAGAAAAAGGTTGGTAAGACATCTCACACCCACTAAATTAGCCGGCAACATTAGTGTTGTTTGACTTCAAATTTCCCAACTACAGGTCTTCAATACCGCAACATTAGTATAAGATTGTGATTAATATCATCAAAGGTATTCTGTTGCGCCCCAGGCCAAGGATTTGGGATCCAGATTCATCTAACACGGGTCCTTTCATCATGCTTTGTACTAACATGCATCTTAGGAAAATTCTTGGGAGGTCACTCAACGAAGAATTGTTGGAGTTCCTATGATTGAGCCATCGAAAAAGGATGATGCACCTTGTTTAGCTTTCTATAGTCAATACATAGGTGTAGTGACCAATCTTTTCTCTTCACATAAAAAACTGGTGCATCCTAGGGAAACAC

Coding sequence (CDS)

ATGACTCGTGGAAACCAGAGGGAGAAAGACCGAGAAAGGGCTCAGGCTCGCAACGGTGGCAAGGGTAAAACCAAAGACGATGGTTTGACTCCCGAGCAGCGCCGTGAAAGAGATGCTAAGGCGCTGCAAGAAAAAGCCGCGAAGAAGGCGGCTCAGGCGGCATCAGGAGGTAATTCATCCGGAGGTAAAGCTAGCACTAAGAAGTAA

Protein sequence

MTRGNQREKDRERAQARNGGKGKTKDDGLTPEQRRERDAKALQEKAAKKAAQAASGGNSSGGKASTKK

Homology

[Close]

BLAST of Pay0011130 vs. ExPASy TrEMBL
Match: A0A1S3C551 (small EDRK-rich factor 2 OS=Cucumis melo OX=3656 GN=LOC103496966 PE=3 SV=1)

HSP 1 Score: 117.9 bits (294), Expect = 1.7e-23
Identity = 68/68 (100.00%), Postives = 68/68 (100.00%), Query Frame = 0


Query: 1  MTRGNQREKDRERAQARNGGKGKTKDDGLTPEQRRERDAKALQEKAAKKAAQAASGGNSS 60
          MTRGNQREKDRERAQARNGGKGKTKDDGLTPEQRRERDAKALQEKAAKKAAQAASGGNSS
Sbjct: 1  MTRGNQREKDRERAQARNGGKGKTKDDGLTPEQRRERDAKALQEKAAKKAAQAASGGNSS 60

Query: 61 GGKASTKK 69
          GGKASTKK
Sbjct: 61 GGKASTKK 68

[Close]

BLAST of Pay0011130 vs. ExPASy TrEMBL
Match: A0A5A7SS85 (Small EDRK-rich factor 2 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold845G001140 PE=3 SV=1)

HSP 1 Score: 113.2 bits (282), Expect = 4.2e-22
Identity = 66/66 (100.00%), Postives = 66/66 (100.00%), Query Frame = 0


Query: 3  RGNQREKDRERAQARNGGKGKTKDDGLTPEQRRERDAKALQEKAAKKAAQAASGGNSSGG 62
          RGNQREKDRERAQARNGGKGKTKDDGLTPEQRRERDAKALQEKAAKKAAQAASGGNSSGG
Sbjct: 17 RGNQREKDRERAQARNGGKGKTKDDGLTPEQRRERDAKALQEKAAKKAAQAASGGNSSGG 76

Query: 63 KASTKK 69
          KASTKK
Sbjct: 77 KASTKK 82

[Close]

BLAST of Pay0011130 vs. ExPASy TrEMBL
Match: A0A5D3DDD9 (Small EDRK-rich factor 2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold275G001070 PE=3 SV=1)

HSP 1 Score: 113.2 bits (282), Expect = 4.2e-22
Identity = 66/66 (100.00%), Postives = 66/66 (100.00%), Query Frame = 0


Query: 3  RGNQREKDRERAQARNGGKGKTKDDGLTPEQRRERDAKALQEKAAKKAAQAASGGNSSGG 62
          RGNQREKDRERAQARNGGKGKTKDDGLTPEQRRERDAKALQEKAAKKAAQAASGGNSSGG
Sbjct: 19 RGNQREKDRERAQARNGGKGKTKDDGLTPEQRRERDAKALQEKAAKKAAQAASGGNSSGG 78

Query: 63 KASTKK 69
          KASTKK
Sbjct: 79 KASTKK 84

[Close]

BLAST of Pay0011130 vs. ExPASy TrEMBL
Match: A0A0A0LHU5 (4F5 domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_2G138790 PE=3 SV=1)

HSP 1 Score: 110.9 bits (276), Expect = 2.1e-21
Identity = 64/68 (94.12%), Postives = 64/68 (94.12%), Query Frame = 0


Query: 1  MTRGNQREKDRERAQARNGGKGKTKDDGLTPEQRRERDAKALQEKAAKKAAQAASGGNSS 60
          MTRGNQREKDRERAQARNGGKGK KDDGLTPEQRRERDAKALQEK AKKAAQA SGGNSS
Sbjct: 1  MTRGNQREKDRERAQARNGGKGKNKDDGLTPEQRRERDAKALQEKTAKKAAQAGSGGNSS 60

Query: 61 GGKASTKK 69
          GGK STKK
Sbjct: 61 GGKPSTKK 68

[Close]

BLAST of Pay0011130 vs. ExPASy TrEMBL
Match: A0A6J1KZW7 (small EDRK-rich factor 2-like OS=Cucurbita maxima OX=3661 GN=LOC111499109 PE=3 SV=1)

HSP 1 Score: 109.4 bits (272), Expect = 6.0e-21
Identity = 64/68 (94.12%), Postives = 65/68 (95.59%), Query Frame = 0


Query: 1  MTRGNQREKDRERAQARNGGKGKTKDDGLTPEQRRERDAKALQEKAAKKAAQAASGGNSS 60
          MTRGNQREKDRERAQAR GGKGKTKDDGLTPEQRRERDAKALQEKAAKKAAQAAS GNSS
Sbjct: 1  MTRGNQREKDRERAQARTGGKGKTKDDGLTPEQRRERDAKALQEKAAKKAAQAASEGNSS 60

Query: 61 GGKASTKK 69
          GGK+S KK
Sbjct: 61 GGKSSAKK 68

[Close]

BLAST of Pay0011130 vs. NCBI nr
Match: XP_008457241.1 (PREDICTED: small EDRK-rich factor 2 [Cucumis melo])

HSP 1 Score: 117.9 bits (294), Expect = 3.5e-23
Identity = 68/68 (100.00%), Postives = 68/68 (100.00%), Query Frame = 0


Query: 1  MTRGNQREKDRERAQARNGGKGKTKDDGLTPEQRRERDAKALQEKAAKKAAQAASGGNSS 60
          MTRGNQREKDRERAQARNGGKGKTKDDGLTPEQRRERDAKALQEKAAKKAAQAASGGNSS
Sbjct: 1  MTRGNQREKDRERAQARNGGKGKTKDDGLTPEQRRERDAKALQEKAAKKAAQAASGGNSS 60

Query: 61 GGKASTKK 69
          GGKASTKK
Sbjct: 61 GGKASTKK 68

[Close]

BLAST of Pay0011130 vs. NCBI nr
Match: KAA0033303.1 (small EDRK-rich factor 2 [Cucumis melo var. makuwa])

HSP 1 Score: 113.2 bits (282), Expect = 8.7e-22
Identity = 66/66 (100.00%), Postives = 66/66 (100.00%), Query Frame = 0


Query: 3  RGNQREKDRERAQARNGGKGKTKDDGLTPEQRRERDAKALQEKAAKKAAQAASGGNSSGG 62
          RGNQREKDRERAQARNGGKGKTKDDGLTPEQRRERDAKALQEKAAKKAAQAASGGNSSGG
Sbjct: 17 RGNQREKDRERAQARNGGKGKTKDDGLTPEQRRERDAKALQEKAAKKAAQAASGGNSSGG 76

Query: 63 KASTKK 69
          KASTKK
Sbjct: 77 KASTKK 82

[Close]

BLAST of Pay0011130 vs. NCBI nr
Match: TYK21602.1 (small EDRK-rich factor 2 [Cucumis melo var. makuwa])

HSP 1 Score: 113.2 bits (282), Expect = 8.7e-22
Identity = 66/66 (100.00%), Postives = 66/66 (100.00%), Query Frame = 0


Query: 3  RGNQREKDRERAQARNGGKGKTKDDGLTPEQRRERDAKALQEKAAKKAAQAASGGNSSGG 62
          RGNQREKDRERAQARNGGKGKTKDDGLTPEQRRERDAKALQEKAAKKAAQAASGGNSSGG
Sbjct: 19 RGNQREKDRERAQARNGGKGKTKDDGLTPEQRRERDAKALQEKAAKKAAQAASGGNSSGG 78

Query: 63 KASTKK 69
          KASTKK
Sbjct: 79 KASTKK 84

[Close]

BLAST of Pay0011130 vs. NCBI nr
Match: XP_038876165.1 (small EDRK-rich factor 2 [Benincasa hispida])

HSP 1 Score: 113.2 bits (282), Expect = 8.7e-22
Identity = 65/68 (95.59%), Postives = 67/68 (98.53%), Query Frame = 0


Query: 1  MTRGNQREKDRERAQARNGGKGKTKDDGLTPEQRRERDAKALQEKAAKKAAQAASGGNSS 60
          MTRGNQREKDRER+QARN GKGKTKDDGLTPEQRRERDAKALQEKAAKKAAQAASGGNSS
Sbjct: 1  MTRGNQREKDRERSQARNSGKGKTKDDGLTPEQRRERDAKALQEKAAKKAAQAASGGNSS 60

Query: 61 GGKASTKK 69
          GGK+STKK
Sbjct: 61 GGKSSTKK 68

[Close]

BLAST of Pay0011130 vs. NCBI nr
Match: XP_004138960.1 (small EDRK-rich factor 2 [Cucumis sativus] >KGN61475.1 hypothetical protein Csa_006230 [Cucumis sativus])

HSP 1 Score: 110.9 bits (276), Expect = 4.3e-21
Identity = 64/68 (94.12%), Postives = 64/68 (94.12%), Query Frame = 0


Query: 1  MTRGNQREKDRERAQARNGGKGKTKDDGLTPEQRRERDAKALQEKAAKKAAQAASGGNSS 60
          MTRGNQREKDRERAQARNGGKGK KDDGLTPEQRRERDAKALQEK AKKAAQA SGGNSS
Sbjct: 1  MTRGNQREKDRERAQARNGGKGKNKDDGLTPEQRRERDAKALQEKTAKKAAQAGSGGNSS 60

Query: 61 GGKASTKK 69
          GGK STKK
Sbjct: 61 GGKPSTKK 68

[Close]

BLAST of Pay0011130 vs. TAIR 10
Match: AT3G24100.1 (Uncharacterised protein family SERF )

HSP 1 Score: 88.2 bits (217), Expect = 2.8e-18
Identity = 51/62 (82.26%), Postives = 55/62 (88.71%), Query Frame = 0


Query: 1  MTRGNQREKDRERAQARNGGKGKTKDDGLTPEQRRERDAKALQEKAAKKAAQAASGGNSS 60
          MTRG+QRE+DRERA AR GGKGK KDDGLTPEQRRERDAKALQEK AKKAAQAA+  +S 
Sbjct: 1  MTRGSQRERDRERALARTGGKGKNKDDGLTPEQRRERDAKALQEKTAKKAAQAAAAASSG 60

Query: 61 GG 63
          GG
Sbjct: 61 GG 62

[Close]

BLAST of Pay0011130 vs. TAIR 10
Match: AT4G13615.1 (Uncharacterised protein family SERF )

HSP 1 Score: 84.3 bits (207), Expect = 4.0e-17
Identity = 53/70 (75.71%), Postives = 58/70 (82.86%), Query Frame = 0


Query: 1  MTRGNQREKDRERAQARNGGKGKTKDDGLTPEQRRERDAKALQEKAAKKAAQA--ASGGN 60
          MTRG+QRE+DRERA AR GGKGK  DDGLTPEQRRERD KALQEKAAKKAAQA  AS G 
Sbjct: 1  MTRGSQRERDRERAAARAGGKGKNGDDGLTPEQRRERDGKALQEKAAKKAAQAAGASSGG 60

Query: 61 SSGGKASTKK 69
          ++GGK +  K
Sbjct: 61 AAGGKGAAAK 70

The following BLAST results are available for this feature:

BLAST of Pay0011130 vs.


Match Name	E-value	Identity	Description

BLAST of Pay0011130 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S3C551	1.7e-23	100.00	small EDRK-rich factor 2 OS=Cucumis melo OX=3656 GN=LOC103496966 PE=3 SV=1	[more]
A0A5A7SS85	4.2e-22	100.00	Small EDRK-rich factor 2 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffol...	[more]
A0A5D3DDD9	4.2e-22	100.00	Small EDRK-rich factor 2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffol...	[more]
A0A0A0LHU5	2.1e-21	94.12	4F5 domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_2G138790 PE=3 SV...	[more]
A0A6J1KZW7	6.0e-21	94.12	small EDRK-rich factor 2-like OS=Cucurbita maxima OX=3661 GN=LOC111499109 PE=3 S...	[more]

BLAST of Pay0011130 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008457241.1	3.5e-23	100.00	PREDICTED: small EDRK-rich factor 2 [Cucumis melo]	[more]
KAA0033303.1	8.7e-22	100.00	small EDRK-rich factor 2 [Cucumis melo var. makuwa]	[more]
TYK21602.1	8.7e-22	100.00	small EDRK-rich factor 2 [Cucumis melo var. makuwa]	[more]
XP_038876165.1	8.7e-22	95.59	small EDRK-rich factor 2 [Benincasa hispida]	[more]
XP_004138960.1	4.3e-21	94.12	small EDRK-rich factor 2 [Cucumis sativus] >KGN61475.1 hypothetical protein Csa_...	[more]

BLAST of Pay0011130 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G24100.1	2.8e-18	82.26	Uncharacterised protein family SERF	[more]
AT4G13615.1	4.0e-17	75.71	Uncharacterised protein family SERF	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (Payzawat) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR007513	Uncharacterised protein family SERF, N-terminal	PFAM	PF04419	4F5	coord: 1..35 e-value: 5.3E-11 score: 43.2
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 53..68
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..68
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..45
None	No IPR available	PANTHER	PTHR13596:SF10	SMALL EDRK-RICH FACTOR 2-LIKE	coord: 1..68
IPR040211	Small EDRK-rich factor 1/2	PANTHER	PTHR13596	SMALL EDRK-RICH FACTOR 1	coord: 1..68

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Pay0011130.1	Pay0011130.1	mRNA