Pay0010934 (gene) Melon (Payzawat) v1

Overview
NamePay0010934
Typegene
OrganismCucumis melo L. var. inodorus cv. Payzawat (Melon (Payzawat) v1)
DescriptionRetrovirus-related Pol polyprotein from transposon TNT 1-94
Locationchr11: 1604245 .. 1606116 (-)
RNA-Seq ExpressionPay0010934
SyntenyPay0010934
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGTACAGCACAACCACTCATTCCAATCTTCAAAGGAGAAGGCTACGAGTTTTGGAGTATTCGTATGAAGACTCTTCTCAGATCTCAAGACTTCGGACTTAGTAAAACAAGGTTATGCGGATCCTGACGACAAAGGCAAGTTGCGGGAGAACAAGAAGAAAGACTCGAAGGCGTTGATGATTATTCAACAAGCAGTCCATGACATTGTTTTTTCCCGGATTGCTGCTGCAACAACGTCAAAACAAGCGTGGCTGATTTTGCAAAATGCATTTCAAGGAGATTTAAGAGTACTTGTGGTTAAATTGCAATCACTTAGACGAGACTTTGAGACCTTAATGATGAAAAATGGAGAATCAATTGCTGATTTTTTATCACGGGCAACAACAATTATTAGTTAGATGCAAACATACGGCGAGACGATTACAGATCAGACTATAGTGGAGAAGTATTGAGAAGTTTGACTCCAAAGTTTGATCATGTTGTGGTTGCAATAGAAGAATCAAAGGATCTGTCCACTTACACATTTATTGAATTAATGGAATCTCTTCAAGCATATGAGTTGAGAATCAATAGATCGATGGAAAGAAACGAAGAAAAAGCGTTTCAGGTAAAGGATGTAGTTCCAAAGTATAATGACAGTGATCATGTCATGACTCGAGGCCGAGGAAGAGGAGGATATCGTGGTCGAGGTCGTGGTACCAGAAAAAGATGTAATCGAAATGAAGAACAAAGGCAGTTCGGAGTGCAATCAAGCAACAAAGCTAATATTCAATGCTACCATTGCAAGAAGTTCGGTCATGTAAAGGCAGACTGATGGAACAAAAATCAGAGAGCTAATTTCACAACAGAGAATGAAGTATCTGAGAATAATGAAAAGGGTGAAAATAAGATTTTTATGACAAACATACCCAGTGATCAAAAGACAATGGAGGTGTGGTTCATTGATAGCAGTTGTTCGAATCACATGACAGGTTTGAAGCCTGTATTCAAGGAGCTTAACGAAGGAGAAAAGTTGAAGGTGGAGCTCGAAAACGGCAAAGAACTACAAGTAGAAGGCAAAGGAACGGTGGGAATTGAAACTCACCATGGAAATAGAATTCTCACAAATGTTCAGTATGTGCCCGATATTGGATATAATTTGCTGAGTGTTGGACAACTAATAGAGAGTGGGTATTCTATCTTGTTTGACGATGGTGTGTGCTATAAAAAATAAGCAAACAGGACGAGTTTTGGCAAAAGTAAAGATGACCGAAAGCAAAATGTTTTCGCTGAAAGTTTCAAATGTGGAAAATTTTGCTCTTACTGCTACTGCAACTAATACAACAAAGAACAAATCGGAGTTATGGCATTTAAGGTATGGACATCTTAATATTAAAGGGCTTTCTTTGCTAAATCGAAGAGATATGGTTATTGGGTTACCGAAAATCAGTGCTTTAATATCTGTGAAGGATGTGTGTATGGAAAACAAACTCGAAAATCTTTTCCTATTAGGAAAGCTTGGAGAGCCTCGAAGTGTCTCAAGCTAATTCATGTTGATTTGTGCGGGCCAATGCAAACAAAGTCTCTTGGTGGGAGTTTTTATTTGAGTTGGATAAATTTTCTAGAAAGCAAATCAAAAACATTTGAGAAGTTCAAGCATTTCAAGGCAAAGGTAAAAAAGCAAAGTGGCGTGTTCATCAAATCTCTTCGTAGTGATAGAGGTGGAGAATTTTTGTTCAACAACTTCAACCATTTTTGTGAGGAACATGGCATCCATAGGGAGTTGACAACACCTTACACTCCGGAGCAAAAAAGGGGTAGCCGAGAGGAAGAATCAAACTGTCGTGGAGATGGCAAGAAGCATGTTGCAAATGAAAGGCCTTTCGAATGA

mRNA sequence

ATGGGTACAGCACAACCACTCATTCCAATCTTCAAAGGAGAAGGCTACGAGTTTTGGAGTATTCTAAAACAAGGTTATGCGGATCCTGACGACAAAGGCAAGTTGCGGGAGAACAAGAAGAAAGACTCGAAGGCGTTGATGATTATTCAACAAGCAGTCCATGACATTGTTTTTTCCCGGATTGCTGCTGCAACAACGTCAAAACAAGCGTGGCTGATTTTGCAAAATGCATTTCAAGGAGATTTAAGAGTACTTGTGGTTAAATTGCAATCACTTAGACGAGACTTTGAGACCTTAATGATGAAAAATGGAGAATCAATTGCTGATTTTTTATCACGGGCAACAACAATTATTAACTATAGTGGAGAAGTATTGAGAAGTTTGACTCCAAAGTTTGATCATGTTGTGGTTGCAATAGAAGAATCAAAGGATCTGTCCACTTACACATTTATTGAATTAATGGAATCTCTTCAAGCATATGAGTTGAGAATCAATAGATCGATGGAAAGAAACGAAGAAAAAGCGTTTCAGGTAAAGGATGTAGTTCCAAAGTATAATGACAGTGATCATGTCATGACTCGAGGCCGAGGAAGAGGAGGATATCGTGGTCGAGGTCGTGGTACCAGAAAAAGATGTAATCGAAATGAAGAACAAAGGCAGTTCGGAGTGCAATCAAGCAACAAAGCTAATATTCAATGCTACCATTGCAAGAAGTTCGGTTTGAAGCCTGTATTCAAGGAGCTTAACGAAGGAGAAAAGTTGAAGGTGGAGCTCGAAAACGGCAAAGAACTACAAGTAGAAGGCAAAGGAACGGTGGGAATTGAAACTCACCATGGAAATAGAATTCTCACAAATGTTCAGTATGTGCCCGATATTGGATATAATTTGCTGAGTGTTGGACAACTAATAGAGAGTGGGTATTCTATCTTGTTTGACGATGAAAGCAAATCAAAAACATTTGAGAAGTTCAAGCATTTCAAGGCAAAGGTAAAAAAGCAAAGTGGCGTGTTCATCAAATCTCTTCGTAGTGATAGAGGTGGAGAATTTTTGTTCAACAACTTCAACCATTTTTGTGAGGAACATGGCATCCATAGGGAGTTGACAACACCTTACACTCCGGAGCAAAAAAGGGGTAGCCGAGAGGAAGAATCAAACTGTCGTGGAGATGGCAAGAAGCATGTTGCAAATGAAAGGCCTTTCGAATGA

Coding sequence (CDS)

ATGGGTACAGCACAACCACTCATTCCAATCTTCAAAGGAGAAGGCTACGAGTTTTGGAGTATTCTAAAACAAGGTTATGCGGATCCTGACGACAAAGGCAAGTTGCGGGAGAACAAGAAGAAAGACTCGAAGGCGTTGATGATTATTCAACAAGCAGTCCATGACATTGTTTTTTCCCGGATTGCTGCTGCAACAACGTCAAAACAAGCGTGGCTGATTTTGCAAAATGCATTTCAAGGAGATTTAAGAGTACTTGTGGTTAAATTGCAATCACTTAGACGAGACTTTGAGACCTTAATGATGAAAAATGGAGAATCAATTGCTGATTTTTTATCACGGGCAACAACAATTATTAACTATAGTGGAGAAGTATTGAGAAGTTTGACTCCAAAGTTTGATCATGTTGTGGTTGCAATAGAAGAATCAAAGGATCTGTCCACTTACACATTTATTGAATTAATGGAATCTCTTCAAGCATATGAGTTGAGAATCAATAGATCGATGGAAAGAAACGAAGAAAAAGCGTTTCAGGTAAAGGATGTAGTTCCAAAGTATAATGACAGTGATCATGTCATGACTCGAGGCCGAGGAAGAGGAGGATATCGTGGTCGAGGTCGTGGTACCAGAAAAAGATGTAATCGAAATGAAGAACAAAGGCAGTTCGGAGTGCAATCAAGCAACAAAGCTAATATTCAATGCTACCATTGCAAGAAGTTCGGTTTGAAGCCTGTATTCAAGGAGCTTAACGAAGGAGAAAAGTTGAAGGTGGAGCTCGAAAACGGCAAAGAACTACAAGTAGAAGGCAAAGGAACGGTGGGAATTGAAACTCACCATGGAAATAGAATTCTCACAAATGTTCAGTATGTGCCCGATATTGGATATAATTTGCTGAGTGTTGGACAACTAATAGAGAGTGGGTATTCTATCTTGTTTGACGATGAAAGCAAATCAAAAACATTTGAGAAGTTCAAGCATTTCAAGGCAAAGGTAAAAAAGCAAAGTGGCGTGTTCATCAAATCTCTTCGTAGTGATAGAGGTGGAGAATTTTTGTTCAACAACTTCAACCATTTTTGTGAGGAACATGGCATCCATAGGGAGTTGACAACACCTTACACTCCGGAGCAAAAAAGGGGTAGCCGAGAGGAAGAATCAAACTGTCGTGGAGATGGCAAGAAGCATGTTGCAAATGAAAGGCCTTTCGAATGA

Protein sequence

MGTAQPLIPIFKGEGYEFWSILKQGYADPDDKGKLRENKKKDSKALMIIQQAVHDIVFSRIAAATTSKQAWLILQNAFQGDLRVLVVKLQSLRRDFETLMMKNGESIADFLSRATTIINYSGEVLRSLTPKFDHVVVAIEESKDLSTYTFIELMESLQAYELRINRSMERNEEKAFQVKDVVPKYNDSDHVMTRGRGRGGYRGRGRGTRKRCNRNEEQRQFGVQSSNKANIQCYHCKKFGLKPVFKELNEGEKLKVELENGKELQVEGKGTVGIETHHGNRILTNVQYVPDIGYNLLSVGQLIESGYSILFDDESKSKTFEKFKHFKAKVKKQSGVFIKSLRSDRGGEFLFNNFNHFCEEHGIHRELTTPYTPEQKRGSREEESNCRGDGKKHVANERPFE
Homology
BLAST of Pay0010934 vs. ExPASy Swiss-Prot
Match: P10978 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum OX=4097 PE=2 SV=1)

HSP 1 Score: 56.6 bits (135), Expect = 7.4e-07
Identity = 25/61 (40.98%), Postives = 38/61 (62.30%), Query Frame = 0

Query: 314 ESKSKTFEKFKHFKAKVKKQSGVFIKSLRSDRGGEFLFNNFNHFCEEHGIHRELTTPYTP 373
           ++K + F+ F+ F A V++++G  +K LRSD GGE+    F  +C  HGI  E T P TP
Sbjct: 520 KTKDQVFQVFQKFHALVERETGRKLKRLRSDNGGEYTSREFEEYCSSHGIRHEKTVPGTP 579

Query: 374 E 375
           +
Sbjct: 580 Q 580

BLAST of Pay0010934 vs. ExPASy TrEMBL
Match: A0A5A7TSJ0 (DUF4219 domain-containing protein/UBN2 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold243G003550 PE=4 SV=1)

HSP 1 Score: 572.8 bits (1475), Expect = 1.1e-159
Identity = 334/521 (64.11%), Postives = 345/521 (66.22%), Query Frame = 0

Query: 21  ILKQGYADPDDKGKLRENKKKDSKALMIIQQAVHDIVFSRIAAATTSKQAWLILQNAFQG 80
           ++KQGYADPDDKGKLRENKKKDSKALMIIQQAV+DIVFSRIAAATTSKQAWLILQNAFQG
Sbjct: 19  LVKQGYADPDDKGKLRENKKKDSKALMIIQQAVYDIVFSRIAAATTSKQAWLILQNAFQG 78

Query: 81  DLRVLVVKLQSLRRDFETLMMKNGESIADFLSRATTIINYSGEVLRSLTPKFDHVVVAIE 140
           DLRVLV+     R D+ +                    +YSGEVLRSLTPKFDHVVVAIE
Sbjct: 79  DLRVLVLDANIRRDDYRS--------------------DYSGEVLRSLTPKFDHVVVAIE 138

Query: 141 ESKDLSTYTFIELMESLQAYELRINRSMERNEEKAFQ------VKDVVPKY--------- 200
           ESKDLSTYTFIELMESLQAYELRINRSMERNEEKAFQ         VVP +         
Sbjct: 139 ESKDLSTYTFIELMESLQAYELRINRSMERNEEKAFQGVLLTLSIRVVPAWVSFGITTYL 198

Query: 201 --------------------------------------------NDSDH----------- 260
                                                       +D +            
Sbjct: 199 GLCGPTGRQSSMDIDMIRVIRRGPRIPIVLVLPPGEGKGRGKLASDKEGSVTCHMGTQFC 258

Query: 261 -----------VMTRGRGRGGYRGRGRGTRKRCNRNEEQRQFGVQSSNKANIQCYHCKKF 320
                      V TRGRGRGGYRG GRGTRKRCNRNEEQRQFGVQSSNK+NIQCYHCKKF
Sbjct: 259 FRVYLSIKSWVVTTRGRGRGGYRGLGRGTRKRCNRNEEQRQFGVQSSNKSNIQCYHCKKF 318

Query: 321 -----------------------------------------------------------G 380
                                                                      G
Sbjct: 319 GHVKADCWNKNQRANFTTENEVSENNGKGENKIFMTNIPSDQKTMEVWFIDSSCSNHMTG 378

Query: 381 LKPVFKELNEGEKLKVELENGKELQVEGKGTVGIETHHGNRILTNVQYVPDIGYNLLSVG 402
           LK VFKELNEGEKLKVELENGKELQVEGKGTVGIETHHGNRILTNVQYVPDIGYNLLSVG
Sbjct: 379 LKRVFKELNEGEKLKVELENGKELQVEGKGTVGIETHHGNRILTNVQYVPDIGYNLLSVG 438

BLAST of Pay0010934 vs. ExPASy TrEMBL
Match: A0A5A7UQM0 (Copia protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold319G00340 PE=4 SV=1)

HSP 1 Score: 527.3 bits (1357), Expect = 5.5e-146
Identity = 304/473 (64.27%), Postives = 334/473 (70.61%), Query Frame = 0

Query: 1   MGTAQPLIPIFKGEGYEFWSI--------------LKQGYADPDDKGKLRENKKKDSKAL 60
           MGT QPLIPIFKGEGYEFWSI              ++QGY DPDD+GKL+EN++KD KAL
Sbjct: 8   MGTTQPLIPIFKGEGYEFWSIRMKTLLISQDLWDLVEQGYTDPDDEGKLQENREKDPKAL 67

Query: 61  MIIQQAVHDIVFSRIAAATTSKQAWLILQNAFQGDLRVLVVKLQSLRRDFETLMMKNGES 120
           +I+QQAVHD VFSRIAAATTSKQAWLILQ AFQGD RVLVVKLQSL+RDFETLMMKNGES
Sbjct: 68  VIVQQAVHDNVFSRIAAATTSKQAWLILQKAFQGDSRVLVVKLQSLKRDFETLMMKNGES 127

Query: 121 IADFLSRATTIINYS---GE----------VLRSLTPKFDHVVVAIEESKDLSTYTFIEL 180
           IADFLSRATTII+     GE          VLRSLTPKFDHVV AIEESKDLST+TFIEL
Sbjct: 128 IADFLSRATTIISQMQTYGETITDQTIVEKVLRSLTPKFDHVVAAIEESKDLSTFTFIEL 187

Query: 181 MESLQAYELRINRSMERNEEKAFQVKDVVPKYNDSDHVMTRGRGRGGYRGRGRGTRKRCN 240
           M SLQA+E RIN SME+N+EKAF+VKDVVPKYNDSD VMT+G+G GGYR RGRGT K CN
Sbjct: 188 MGSLQAHESRINISMEKNKEKAFKVKDVVPKYNDSDCVMTQGQGSGGYRSRGRGTGKGCN 247

Query: 241 RNEEQRQFGVQSSNKANIQCYHCKKF---------------------------------- 300
           +NEEQRQFGVQSSNKANIQCYHCKKF                                  
Sbjct: 248 QNEEQRQFGVQSSNKANIQCYHCKKFGHVKADCWYKNQRANFTEQNEASENNGKGENKLF 307

Query: 301 -------------------------GLKPVFKELNEGEKLKVELENGKELQVEGKGTVGI 360
                                    GLKPVFKELNEGEKLKVEL N KELQVEGK  +GI
Sbjct: 308 MINIPSDQKTTEVWFIDSGHLNHMTGLKPVFKELNEGEKLKVELGNSKELQVEGKRMMGI 367

Query: 361 ETHHGNRILTNVQ-----------YVPDI-GYNLLSVGQLIESGYSILFDDESKSKTFEK 376
           ETH+GNRILTNVQ            V ++  + L +         S L+   S+S+TFEK
Sbjct: 368 ETHNGNRILTNVQTSFGESKDDPKEVSNVENFALTATATNTTKNNSELW-HLSQSETFEK 427

BLAST of Pay0010934 vs. ExPASy TrEMBL
Match: A0A5D3DWP2 (Putative gag-pol polyprotein, identical OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold225G00850 PE=4 SV=1)

HSP 1 Score: 525.4 bits (1352), Expect = 2.1e-145
Identity = 317/579 (54.75%), Postives = 336/579 (58.03%), Query Frame = 0

Query: 17  EFWSILKQGYADPDDKGKLRENKKKDSKALMIIQQAVHDIVFSRIAAATTSKQAWLILQN 76
           + W +++QGY DPDD+GKLREN+KKDSKAL+IIQQAVHD VFSRIA ATTSKQAWLILQ 
Sbjct: 125 DLWDLVEQGYVDPDDEGKLRENRKKDSKALVIIQQAVHDSVFSRIATATTSKQAWLILQK 184

Query: 77  AFQGDLRVLVVKLQSLRRDFETLMMKNGESIADFLSRATTIINYS---GE---------- 136
           AFQGD RVL+VKLQSLRRDFETLMMKNGESIADFLSRATTII+     GE          
Sbjct: 185 AFQGDSRVLMVKLQSLRRDFETLMMKNGESIADFLSRATTIISQMQTYGETIKDQTIVEK 244

Query: 137 VLRSLTPKFDHVVVAIEESKDLSTYTFIELMESLQAYELRINRSMERNEEKAFQVKDVVP 196
           VLRSLTPKFDHVV AIEESK+L T+TFIELM SL+A+E RINRSMERNEEKAFQVKD VP
Sbjct: 245 VLRSLTPKFDHVVAAIEESKNLFTFTFIELMGSLEAHESRINRSMERNEEKAFQVKDAVP 304

Query: 197 KYNDSDHVMTRGRGRGGYRGRGRGTRKRCNRNEEQRQFGVQSSNKANIQCYHCKKF---- 256
           KYNDSD VMTRGRGRGGYRGRG GT K CNRNE QRQFGVQSSNKANIQCYHCKKF    
Sbjct: 305 KYNDSDRVMTRGRGRGGYRGRGHGTEKGCNRNEAQRQFGVQSSNKANIQCYHCKKFGHVK 364

Query: 257 -------------------------------------------------------GLKPV 316
                                                                  GLKPV
Sbjct: 365 ADCWYKNQRANFAAENEASENNGNCENKLFMTNIPSDQKTAEVWFIDSSCSNHMTGLKPV 424

Query: 317 FKELNEGEKLKVELENGKELQVEGKGTVGIETHHGNRILTNVQYVPDIGYNLLSVGQLIE 376
           FKELNEGEKLKV+L NGKELQVEGKGTV IETHHGNRILTNVQYVPDIGYNLLSVGQL+E
Sbjct: 425 FKELNEGEKLKVKLRNGKELQVEGKGTVVIETHHGNRILTNVQYVPDIGYNLLSVGQLME 484

BLAST of Pay0010934 vs. ExPASy TrEMBL
Match: A0A5D3DWC7 (Putative gag-pol polyprotein, identical OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold289G00230 PE=4 SV=1)

HSP 1 Score: 506.9 bits (1304), Expect = 7.7e-140
Identity = 306/545 (56.15%), Postives = 331/545 (60.73%), Query Frame = 0

Query: 1   MGTAQPLIPIFKGEGYEFWSI--------------LKQGYADPDDKGKLRENKKKDSKAL 60
           MGTAQPLIPIFKGEGYEFWSI              ++QGY DPDD+GKL+EN++KDSKAL
Sbjct: 8   MGTAQPLIPIFKGEGYEFWSIRMKTLLISQDLWDLVEQGYTDPDDEGKLQENREKDSKAL 67

Query: 61  MIIQQAVHDIVFSRIAAATTSKQAWLILQNAFQGDLRVLVVKLQSLRRDFETLMMKNGES 120
           +IIQQAVHD VFSRIAAATT                           RDFETLMMKNGES
Sbjct: 68  VIIQQAVHDNVFSRIAAATT---------------------------RDFETLMMKNGES 127

Query: 121 IADFLSRATTIINYS---GE----------VLRSLTPKFDHVVVAIEESKDLSTYTFIEL 180
           IADFLSRATTII+     GE          VLRSLTPKFDHVVVAIEESKDLST+TFIEL
Sbjct: 128 IADFLSRATTIISQMQTYGETITDQTIVEKVLRSLTPKFDHVVVAIEESKDLSTFTFIEL 187

Query: 181 MESLQAYELRINRSMERNEEKAFQVKDVVPKYNDSDHVMTRGRGRGGYRGRGRGTRKRCN 240
           M SLQA+E RIN SME+NEEKAF+VKDVVPKYNDSD VMT+G+G GGYR RGRGT K CN
Sbjct: 188 MGSLQAHESRINISMEKNEEKAFKVKDVVPKYNDSDCVMTQGQGSGGYRSRGRGTGKGCN 247

Query: 241 RNEEQRQFGVQSSNKANIQCYHCKKFG--------------------------------- 300
           +NEEQRQFGVQSSNKANIQCYHCKKFG                                 
Sbjct: 248 QNEEQRQFGVQSSNKANIQCYHCKKFGHVKADCWYKNHRANFTEQNEASENNGNGENKLF 307

Query: 301 --------------------------LKPVFKELNEGEKLKVELENGKELQVEGKGTVGI 360
                                     LKPVFKELNEGEKLKVEL NGKELQVEGK T+GI
Sbjct: 308 MTNIPSDQKTTEVWFIDSGHLNHMTDLKPVFKELNEGEKLKVELGNGKELQVEGKRTMGI 367

Query: 361 ETHHGNRILTNVQYVPDIGYNLLSVGQLIESGYSILFDD--------------------- 376
           ETH+GNRILTNVQYVPDIGYNLLSVGQL+ESG+SILFDD                     
Sbjct: 368 ETHNGNRILTNVQYVPDIGYNLLSVGQLMESGHSILFDDGACLIKNKQTGRVLAKVKMTQ 427

BLAST of Pay0010934 vs. ExPASy TrEMBL
Match: A0A5D3CL10 (UBN2 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1017G00080 PE=4 SV=1)

HSP 1 Score: 490.0 bits (1260), Expect = 9.7e-135
Identity = 275/381 (72.18%), Postives = 299/381 (78.48%), Query Frame = 0

Query: 20  SILKQGYADPDDKGKLRENKKKDSKALMIIQQAVHDIVFSRIAAATTSKQAWLILQNAFQ 79
           ++++QGYADPDD+GKLR NKKKDSK L+IIQQAVHD VFS+I  ATTSKQAWLILQ  FQ
Sbjct: 2   NLVEQGYADPDDEGKLRMNKKKDSKVLVIIQQAVHDSVFSQIVIATTSKQAWLILQKEFQ 61

Query: 80  GDLRVLVVKLQSLRRDFETLMMKNGESIADFLSRATTIIN----YS---------GEVLR 139
           GD RVLVVKLQSLRRDFETLMMKNGESIADFLSRATTII+    YS          +VLR
Sbjct: 62  GDSRVLVVKLQSLRRDFETLMMKNGESIADFLSRATTIISQMQTYSETIKDHTIVEKVLR 121

Query: 140 SLTPKFDHVVVAIEESKDLSTYTFIELMESLQAYELRINRSMERNEEKAFQVKDVVPKYN 199
           SLTPKFDHVV  IEESKDLST+TFIELM SLQA+E RINRSMERNEEKAFQVKDVV KYN
Sbjct: 122 SLTPKFDHVVATIEESKDLSTFTFIELMGSLQAHESRINRSMERNEEKAFQVKDVVLKYN 181

Query: 200 DSDHVMTRGRGRGGYRGRGRGTRKRCNRNEEQRQFGVQSSNKANIQCYHCKKFG------ 259
           DSD V TRGRGRGGYRGRG G  K CN+NEEQRQFGVQSSNKANIQCYH KKFG      
Sbjct: 182 DSDRVTTRGRGRGGYRGRGCGIEKGCNQNEEQRQFGVQSSNKANIQCYHFKKFGHVKADC 241

Query: 260 ----LKPVFKELNEGEKL--KVELENGKELQVEGKGTVGIETHHGNRILTNVQYVPDIGY 319
                +   ++  E +++  +VEL NGKELQVEGKGTVGIETHHGNRILT          
Sbjct: 242 WYKNQRANSQQRMEHQRIMERVELGNGKELQVEGKGTVGIETHHGNRILT---------- 301

Query: 320 NLLSVGQLIESGYSILFDDESKSKTFEKFKHFKAKVKKQSGVFIKSLRSDRGGEFLFNNF 376
                          +F  +SKS+TFEKFKHFKAKV+KQSG+FIKSLRSDRGGEFL NNF
Sbjct: 302 ---------------MF--KSKSETFEKFKHFKAKVEKQSGMFIKSLRSDRGGEFLSNNF 355

BLAST of Pay0010934 vs. NCBI nr
Match: KAA0045828.1 (DUF4219 domain-containing protein/UBN2 domain-containing protein [Cucumis melo var. makuwa])

HSP 1 Score: 572.8 bits (1475), Expect = 2.4e-159
Identity = 334/521 (64.11%), Postives = 345/521 (66.22%), Query Frame = 0

Query: 21  ILKQGYADPDDKGKLRENKKKDSKALMIIQQAVHDIVFSRIAAATTSKQAWLILQNAFQG 80
           ++KQGYADPDDKGKLRENKKKDSKALMIIQQAV+DIVFSRIAAATTSKQAWLILQNAFQG
Sbjct: 19  LVKQGYADPDDKGKLRENKKKDSKALMIIQQAVYDIVFSRIAAATTSKQAWLILQNAFQG 78

Query: 81  DLRVLVVKLQSLRRDFETLMMKNGESIADFLSRATTIINYSGEVLRSLTPKFDHVVVAIE 140
           DLRVLV+     R D+ +                    +YSGEVLRSLTPKFDHVVVAIE
Sbjct: 79  DLRVLVLDANIRRDDYRS--------------------DYSGEVLRSLTPKFDHVVVAIE 138

Query: 141 ESKDLSTYTFIELMESLQAYELRINRSMERNEEKAFQ------VKDVVPKY--------- 200
           ESKDLSTYTFIELMESLQAYELRINRSMERNEEKAFQ         VVP +         
Sbjct: 139 ESKDLSTYTFIELMESLQAYELRINRSMERNEEKAFQGVLLTLSIRVVPAWVSFGITTYL 198

Query: 201 --------------------------------------------NDSDH----------- 260
                                                       +D +            
Sbjct: 199 GLCGPTGRQSSMDIDMIRVIRRGPRIPIVLVLPPGEGKGRGKLASDKEGSVTCHMGTQFC 258

Query: 261 -----------VMTRGRGRGGYRGRGRGTRKRCNRNEEQRQFGVQSSNKANIQCYHCKKF 320
                      V TRGRGRGGYRG GRGTRKRCNRNEEQRQFGVQSSNK+NIQCYHCKKF
Sbjct: 259 FRVYLSIKSWVVTTRGRGRGGYRGLGRGTRKRCNRNEEQRQFGVQSSNKSNIQCYHCKKF 318

Query: 321 -----------------------------------------------------------G 380
                                                                      G
Sbjct: 319 GHVKADCWNKNQRANFTTENEVSENNGKGENKIFMTNIPSDQKTMEVWFIDSSCSNHMTG 378

Query: 381 LKPVFKELNEGEKLKVELENGKELQVEGKGTVGIETHHGNRILTNVQYVPDIGYNLLSVG 402
           LK VFKELNEGEKLKVELENGKELQVEGKGTVGIETHHGNRILTNVQYVPDIGYNLLSVG
Sbjct: 379 LKRVFKELNEGEKLKVELENGKELQVEGKGTVGIETHHGNRILTNVQYVPDIGYNLLSVG 438

BLAST of Pay0010934 vs. NCBI nr
Match: KAA0055915.1 (copia protein [Cucumis melo var. makuwa])

HSP 1 Score: 527.3 bits (1357), Expect = 1.1e-145
Identity = 304/473 (64.27%), Postives = 334/473 (70.61%), Query Frame = 0

Query: 1   MGTAQPLIPIFKGEGYEFWSI--------------LKQGYADPDDKGKLRENKKKDSKAL 60
           MGT QPLIPIFKGEGYEFWSI              ++QGY DPDD+GKL+EN++KD KAL
Sbjct: 8   MGTTQPLIPIFKGEGYEFWSIRMKTLLISQDLWDLVEQGYTDPDDEGKLQENREKDPKAL 67

Query: 61  MIIQQAVHDIVFSRIAAATTSKQAWLILQNAFQGDLRVLVVKLQSLRRDFETLMMKNGES 120
           +I+QQAVHD VFSRIAAATTSKQAWLILQ AFQGD RVLVVKLQSL+RDFETLMMKNGES
Sbjct: 68  VIVQQAVHDNVFSRIAAATTSKQAWLILQKAFQGDSRVLVVKLQSLKRDFETLMMKNGES 127

Query: 121 IADFLSRATTIINYS---GE----------VLRSLTPKFDHVVVAIEESKDLSTYTFIEL 180
           IADFLSRATTII+     GE          VLRSLTPKFDHVV AIEESKDLST+TFIEL
Sbjct: 128 IADFLSRATTIISQMQTYGETITDQTIVEKVLRSLTPKFDHVVAAIEESKDLSTFTFIEL 187

Query: 181 MESLQAYELRINRSMERNEEKAFQVKDVVPKYNDSDHVMTRGRGRGGYRGRGRGTRKRCN 240
           M SLQA+E RIN SME+N+EKAF+VKDVVPKYNDSD VMT+G+G GGYR RGRGT K CN
Sbjct: 188 MGSLQAHESRINISMEKNKEKAFKVKDVVPKYNDSDCVMTQGQGSGGYRSRGRGTGKGCN 247

Query: 241 RNEEQRQFGVQSSNKANIQCYHCKKF---------------------------------- 300
           +NEEQRQFGVQSSNKANIQCYHCKKF                                  
Sbjct: 248 QNEEQRQFGVQSSNKANIQCYHCKKFGHVKADCWYKNQRANFTEQNEASENNGKGENKLF 307

Query: 301 -------------------------GLKPVFKELNEGEKLKVELENGKELQVEGKGTVGI 360
                                    GLKPVFKELNEGEKLKVEL N KELQVEGK  +GI
Sbjct: 308 MINIPSDQKTTEVWFIDSGHLNHMTGLKPVFKELNEGEKLKVELGNSKELQVEGKRMMGI 367

Query: 361 ETHHGNRILTNVQ-----------YVPDI-GYNLLSVGQLIESGYSILFDDESKSKTFEK 376
           ETH+GNRILTNVQ            V ++  + L +         S L+   S+S+TFEK
Sbjct: 368 ETHNGNRILTNVQTSFGESKDDPKEVSNVENFALTATATNTTKNNSELW-HLSQSETFEK 427

BLAST of Pay0010934 vs. NCBI nr
Match: TYK27735.1 (putative gag-pol polyprotein, identical [Cucumis melo var. makuwa])

HSP 1 Score: 525.4 bits (1352), Expect = 4.3e-145
Identity = 317/579 (54.75%), Postives = 336/579 (58.03%), Query Frame = 0

Query: 17  EFWSILKQGYADPDDKGKLRENKKKDSKALMIIQQAVHDIVFSRIAAATTSKQAWLILQN 76
           + W +++QGY DPDD+GKLREN+KKDSKAL+IIQQAVHD VFSRIA ATTSKQAWLILQ 
Sbjct: 125 DLWDLVEQGYVDPDDEGKLRENRKKDSKALVIIQQAVHDSVFSRIATATTSKQAWLILQK 184

Query: 77  AFQGDLRVLVVKLQSLRRDFETLMMKNGESIADFLSRATTIINYS---GE---------- 136
           AFQGD RVL+VKLQSLRRDFETLMMKNGESIADFLSRATTII+     GE          
Sbjct: 185 AFQGDSRVLMVKLQSLRRDFETLMMKNGESIADFLSRATTIISQMQTYGETIKDQTIVEK 244

Query: 137 VLRSLTPKFDHVVVAIEESKDLSTYTFIELMESLQAYELRINRSMERNEEKAFQVKDVVP 196
           VLRSLTPKFDHVV AIEESK+L T+TFIELM SL+A+E RINRSMERNEEKAFQVKD VP
Sbjct: 245 VLRSLTPKFDHVVAAIEESKNLFTFTFIELMGSLEAHESRINRSMERNEEKAFQVKDAVP 304

Query: 197 KYNDSDHVMTRGRGRGGYRGRGRGTRKRCNRNEEQRQFGVQSSNKANIQCYHCKKF---- 256
           KYNDSD VMTRGRGRGGYRGRG GT K CNRNE QRQFGVQSSNKANIQCYHCKKF    
Sbjct: 305 KYNDSDRVMTRGRGRGGYRGRGHGTEKGCNRNEAQRQFGVQSSNKANIQCYHCKKFGHVK 364

Query: 257 -------------------------------------------------------GLKPV 316
                                                                  GLKPV
Sbjct: 365 ADCWYKNQRANFAAENEASENNGNCENKLFMTNIPSDQKTAEVWFIDSSCSNHMTGLKPV 424

Query: 317 FKELNEGEKLKVELENGKELQVEGKGTVGIETHHGNRILTNVQYVPDIGYNLLSVGQLIE 376
           FKELNEGEKLKV+L NGKELQVEGKGTV IETHHGNRILTNVQYVPDIGYNLLSVGQL+E
Sbjct: 425 FKELNEGEKLKVKLRNGKELQVEGKGTVVIETHHGNRILTNVQYVPDIGYNLLSVGQLME 484

BLAST of Pay0010934 vs. NCBI nr
Match: TYK28117.1 (putative gag-pol polyprotein, identical [Cucumis melo var. makuwa])

HSP 1 Score: 506.9 bits (1304), Expect = 1.6e-139
Identity = 306/545 (56.15%), Postives = 331/545 (60.73%), Query Frame = 0

Query: 1   MGTAQPLIPIFKGEGYEFWSI--------------LKQGYADPDDKGKLRENKKKDSKAL 60
           MGTAQPLIPIFKGEGYEFWSI              ++QGY DPDD+GKL+EN++KDSKAL
Sbjct: 8   MGTAQPLIPIFKGEGYEFWSIRMKTLLISQDLWDLVEQGYTDPDDEGKLQENREKDSKAL 67

Query: 61  MIIQQAVHDIVFSRIAAATTSKQAWLILQNAFQGDLRVLVVKLQSLRRDFETLMMKNGES 120
           +IIQQAVHD VFSRIAAATT                           RDFETLMMKNGES
Sbjct: 68  VIIQQAVHDNVFSRIAAATT---------------------------RDFETLMMKNGES 127

Query: 121 IADFLSRATTIINYS---GE----------VLRSLTPKFDHVVVAIEESKDLSTYTFIEL 180
           IADFLSRATTII+     GE          VLRSLTPKFDHVVVAIEESKDLST+TFIEL
Sbjct: 128 IADFLSRATTIISQMQTYGETITDQTIVEKVLRSLTPKFDHVVVAIEESKDLSTFTFIEL 187

Query: 181 MESLQAYELRINRSMERNEEKAFQVKDVVPKYNDSDHVMTRGRGRGGYRGRGRGTRKRCN 240
           M SLQA+E RIN SME+NEEKAF+VKDVVPKYNDSD VMT+G+G GGYR RGRGT K CN
Sbjct: 188 MGSLQAHESRINISMEKNEEKAFKVKDVVPKYNDSDCVMTQGQGSGGYRSRGRGTGKGCN 247

Query: 241 RNEEQRQFGVQSSNKANIQCYHCKKFG--------------------------------- 300
           +NEEQRQFGVQSSNKANIQCYHCKKFG                                 
Sbjct: 248 QNEEQRQFGVQSSNKANIQCYHCKKFGHVKADCWYKNHRANFTEQNEASENNGNGENKLF 307

Query: 301 --------------------------LKPVFKELNEGEKLKVELENGKELQVEGKGTVGI 360
                                     LKPVFKELNEGEKLKVEL NGKELQVEGK T+GI
Sbjct: 308 MTNIPSDQKTTEVWFIDSGHLNHMTDLKPVFKELNEGEKLKVELGNGKELQVEGKRTMGI 367

Query: 361 ETHHGNRILTNVQYVPDIGYNLLSVGQLIESGYSILFDD--------------------- 376
           ETH+GNRILTNVQYVPDIGYNLLSVGQL+ESG+SILFDD                     
Sbjct: 368 ETHNGNRILTNVQYVPDIGYNLLSVGQLMESGHSILFDDGACLIKNKQTGRVLAKVKMTQ 427

BLAST of Pay0010934 vs. NCBI nr
Match: TYK12002.1 (UBN2 domain-containing protein [Cucumis melo var. makuwa])

HSP 1 Score: 490.0 bits (1260), Expect = 2.0e-134
Identity = 275/381 (72.18%), Postives = 299/381 (78.48%), Query Frame = 0

Query: 20  SILKQGYADPDDKGKLRENKKKDSKALMIIQQAVHDIVFSRIAAATTSKQAWLILQNAFQ 79
           ++++QGYADPDD+GKLR NKKKDSK L+IIQQAVHD VFS+I  ATTSKQAWLILQ  FQ
Sbjct: 2   NLVEQGYADPDDEGKLRMNKKKDSKVLVIIQQAVHDSVFSQIVIATTSKQAWLILQKEFQ 61

Query: 80  GDLRVLVVKLQSLRRDFETLMMKNGESIADFLSRATTIIN----YS---------GEVLR 139
           GD RVLVVKLQSLRRDFETLMMKNGESIADFLSRATTII+    YS          +VLR
Sbjct: 62  GDSRVLVVKLQSLRRDFETLMMKNGESIADFLSRATTIISQMQTYSETIKDHTIVEKVLR 121

Query: 140 SLTPKFDHVVVAIEESKDLSTYTFIELMESLQAYELRINRSMERNEEKAFQVKDVVPKYN 199
           SLTPKFDHVV  IEESKDLST+TFIELM SLQA+E RINRSMERNEEKAFQVKDVV KYN
Sbjct: 122 SLTPKFDHVVATIEESKDLSTFTFIELMGSLQAHESRINRSMERNEEKAFQVKDVVLKYN 181

Query: 200 DSDHVMTRGRGRGGYRGRGRGTRKRCNRNEEQRQFGVQSSNKANIQCYHCKKFG------ 259
           DSD V TRGRGRGGYRGRG G  K CN+NEEQRQFGVQSSNKANIQCYH KKFG      
Sbjct: 182 DSDRVTTRGRGRGGYRGRGCGIEKGCNQNEEQRQFGVQSSNKANIQCYHFKKFGHVKADC 241

Query: 260 ----LKPVFKELNEGEKL--KVELENGKELQVEGKGTVGIETHHGNRILTNVQYVPDIGY 319
                +   ++  E +++  +VEL NGKELQVEGKGTVGIETHHGNRILT          
Sbjct: 242 WYKNQRANSQQRMEHQRIMERVELGNGKELQVEGKGTVGIETHHGNRILT---------- 301

Query: 320 NLLSVGQLIESGYSILFDDESKSKTFEKFKHFKAKVKKQSGVFIKSLRSDRGGEFLFNNF 376
                          +F  +SKS+TFEKFKHFKAKV+KQSG+FIKSLRSDRGGEFL NNF
Sbjct: 302 ---------------MF--KSKSETFEKFKHFKAKVEKQSGMFIKSLRSDRGGEFLSNNF 355

BLAST of Pay0010934 vs. TAIR 10
Match: AT3G21000.1 (Gag-Pol-related retrotransposon family protein )

HSP 1 Score: 58.2 bits (139), Expect = 1.8e-08
Identity = 82/326 (25.15%), Postives = 136/326 (41.72%), Query Frame = 0

Query: 29  PDDKGKLRENKKKDSKALMIIQQAVHDIVFSRIAAATTSKQAW-LILQNAFQGDLRVL-V 88
           P++  K R+   KD+KAL I+Q ++ D VF +  +A+++K  W L+ +   Q  +R L  
Sbjct: 57  PEELSKWRDFVVKDAKALQILQSSLTDSVFRKTLSASSAKDVWDLLRKGNEQATIRRLEQ 116

Query: 89  VKLQSLRRDFETLMMKNGESIADFLSRATTIINYSG-------------EVLRSLTPKFD 148
           V ++ L +  E L M + ES + +L +A  I+   G              V  +L+  FD
Sbjct: 117 VTIRRLEKQLEDLKMVDKESGSSYLDKALEILERLGRAKLEKSDYEICKNVFTTLSGSFD 176

Query: 149 HVVVAIEESKDLSTYTFIELMESLQAYELRINRSMERNEEKAF-QVKDVVPKYNDSDHVM 208
            +   +EE  D+   T   L+E    +  R++ S    EE  F  +KD+  K        
Sbjct: 177 GLDSMLEELIDVHKMTSKSLVE---YFYYRVHES--STEEAIFGLLKDLRLKSKSE---- 236

Query: 209 TRGRGRGGYRGRGRGTRKRCNRNEEQRQFGVQSSNK-------ANIQCYHCKKFGLK--- 268
                      +  G   + N N+E  +F + +  +        + +       G K   
Sbjct: 237 -----------KWCGLCYKNNHNQEDCKFRIHTDKEEKEDEIVVDYRLETVPNLGAKTYD 296

Query: 269 ----------PV--------FKELNEGEKLKVELENGKELQVEGKGTVGIETHHG-NRIL 310
                     P+        F  L+   K  V   +G  L VEGKG V I    G  + +
Sbjct: 297 DDIWIIHKMAPINMTPYVKYFTTLDRTFKATVGTVDGTVLLVEGKGDVKIRMKEGKKKTI 356

BLAST of Pay0010934 vs. TAIR 10
Match: AT1G48720.1 (unknown protein; Has 229 Blast hits to 229 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 1; Fungi - 0; Plants - 228; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 43.9 bits (102), Expect = 3.5e-04
Identity = 18/61 (29.51%), Postives = 39/61 (63.93%), Query Frame = 0

Query: 16 YEFWSILKQGYADPDDKGK--------LRENKKKDSKALMIIQQAVHDIVFSRIAAATTS 69
          ++ W I+++G+ +P+++G         LR+++K+D KAL +I Q + +  F ++  AT++
Sbjct: 32 HDVWEIVEKGFIEPENEGSLSQTQKDGLRDSRKRDKKALCLIYQGLDEDTFEKVVEATSA 91

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
P109787.4e-0740.98Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum... [more]
Match NameE-valueIdentityDescription
A0A5A7TSJ01.1e-15964.11DUF4219 domain-containing protein/UBN2 domain-containing protein OS=Cucumis melo... [more]
A0A5A7UQM05.5e-14664.27Copia protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold319G00340 ... [more]
A0A5D3DWP22.1e-14554.75Putative gag-pol polyprotein, identical OS=Cucumis melo var. makuwa OX=1194695 G... [more]
A0A5D3DWC77.7e-14056.15Putative gag-pol polyprotein, identical OS=Cucumis melo var. makuwa OX=1194695 G... [more]
A0A5D3CL109.7e-13572.18UBN2 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_s... [more]
Match NameE-valueIdentityDescription
KAA0045828.12.4e-15964.11DUF4219 domain-containing protein/UBN2 domain-containing protein [Cucumis melo v... [more]
KAA0055915.11.1e-14564.27copia protein [Cucumis melo var. makuwa][more]
TYK27735.14.3e-14554.75putative gag-pol polyprotein, identical [Cucumis melo var. makuwa][more]
TYK28117.11.6e-13956.15putative gag-pol polyprotein, identical [Cucumis melo var. makuwa][more]
TYK12002.12.0e-13472.18UBN2 domain-containing protein [Cucumis melo var. makuwa][more]
Match NameE-valueIdentityDescription
AT3G21000.11.8e-0825.15Gag-Pol-related retrotransposon family protein [more]
AT1G48720.13.5e-0429.51unknown protein; Has 229 Blast hits to 229 proteins in 10 species: Archae - 0; B... [more]
InterPro
Analysis Name: InterPro Annotations of Melon (Payzawat) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePFAMPF14223Retrotran_gag_2coord: 39..119
e-value: 4.4E-10
score: 39.4
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 366..401
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 187..211
NoneNo IPR availablePANTHERPTHR34222FAMILY NOT NAMEDcoord: 17..311
NoneNo IPR availablePANTHERPTHR34222:SF30SUBFAMILY NOT NAMEDcoord: 17..311
IPR036397Ribonuclease H superfamilyGENE3D3.30.420.10coord: 307..379
e-value: 3.6E-11
score: 45.1
IPR012337Ribonuclease H-like superfamilySUPERFAMILY53098Ribonuclease H-likecoord: 316..375

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Pay0010934.1Pay0010934.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003676 nucleic acid binding