Pay0010341 (gene) Melon (Payzawat) v1

Overview


Name	Pay0010341
Type	gene
Organism	Cucumis melo L. var. inodorus cv. Payzawat (Melon (Payzawat) v1)
Description	Peptide deformylase
Location	chr07: 28420997 .. 28423075 (+)
RNA-Seq Expression	Pay0010341
Synteny	Pay0010341

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAGGCAATTCACCGATTCTCCTTCCGTCTCTTCCCAATCTCTCTTGCCGAAAGGTGTCGCAAGCCTTCTTTACTCGCACCTAATTTTCGGAAACTCATTCACAGGACCATTTCTTCATCGCCCAACATTCCAAAATTCATTCCGGCCCCCAAAACCTACGGTTCCTCTTCAACTTCCATTGCCAAAGCCGGTTGGTTTCTTGGTCTTGGAGAGCAGAAGAAAATGAGCTTACCGTCGATTGTGAAGGCTGGTGACCCAGTTTTGCACGAGCCTGCTCGTGAAGTTGATCCTAAGGAAATAGGGTCGGAGAAGATTCAGAAGATAATCGACGATATGGTTTTGACCATGAGGAAGGCTCCTGGAGTCGGTCTTGCAGCTCCCCAGATTGGAATTCCATTAAGGGTCAGTTGAAATTACTTGTGCGTCTAATCATTACTCTGTTTTTTTTTATTATTTGTTTGCTGTGTGAATTGGAAATGTGAGATTTGGCAGCTGAAATTGTGATTGATGGGGCTGTGTTGTTGAAATGGGCGTTGAAATTGTGATTGATGGAGCTGAAATGTCAGTTGAAATTGTTCTCTATTTTCTTGTTCTTGGGGCTGTGCTTGATGGGGTTTCTGGTTTCATTGAGTTCTCCAAATGTGAAATTTCATTGAAAAACCTTGAATTTGGATTCAATATGAAGTGTTTCCTTGTGCATTTGTTGTAGATAATTGTTTTGGAAGATACTAAAGAATATATAAGTTATGCACCTAAGGAGGAGATCAAAGCACAAGATAGGCGCCCCTTTGATCTTCTGGTATGGTTATATATTAATGAGAAAGCAAATTGAATTGAATTTCTATCTTTGTTTTTTATGTTCACCAATCAATTTCTTAGTTTTATTGAGTCAGGTGATCATAAACCCAAAGCTAAAAAGTAAAAGCAACAAGACTGCATTGTTTTTTGAAGGGTGCCTCAGGTAAGATGCAGATTGGCAATCCACTTTTCTCTCTCAGTTCTTTCTCTGAAGTGGTTTGCAAAACCAATTTATTGTTTCTCTTCCTTTCCCTTTCCCTCTTCTTCCTTGCATGCTCTCAGGTCCTATCTTGCTAATTTGAGAAATGGAAAATGAACTTCCAAAGTACTAGCTCGATCATTTCTTAAAAGTTAGTGTACTTTTTCTCTTTATCCTAGAAAATATGTGTAGCGAATAAAAATGAACAAAATTAAATCATCTCGAGTTGACCTAGTTGTTAGGGAATGACCTTGACAAATGGCTAAGAGTTTATGAGTTCAATTCATTGTGACCACCTACCTAGGTTTTAAATAACCTATAAGTTTTTTTGACATTTAAATGTTGTAGGATTAAGCAGGTTGTTTATGAGATTAGTCCAAGTGTGAGTATTTAAAACAAAAAAAAAAAGAGAAAAAATCAAACAAATGTGTGAGTGAAATTTATGTGCTTCTGTGTACAGGCTCCATCCTACAATAAAAATGATGCCACAGTAGCATTGTTTATCTACACGTTGAGATTATATAACTAGTCTCTTCAATGTTCAATTTGACTCAATGTTAAAACATTTATGTGGTTCTAAAGCCGTGGATAGGCAACAGGGGCTCAATCAATCCAACGTAGAAATTTCTCTTGGATTCAATTGAGTTAATGATCAGTGGCTTGCTTGCCCTCCTAAACAAAGGCACGCCACTTTGTGCAAGCTGTTATGTACTAATATTCACTTCTAACAGACTAATTAATATTGACCTCTCAATCAACACTTCTAATATGTATGAAAACCAAAAGTCATATTCCTACCGTAAAACGATGCCATAGTAGCGTTGTTTATTTACACTTCGATATTATAGTTTATGAGAAAGATGAACTGTTTAGTCCCTTCTTTCATTTAGATAATCTGGTTGATGTGAAAGTATAAGCTTTCTTGCTCTTTTCTAAGTTTTCCTTTTAACAGATTGTTTCCAGTTGAGGCTGTATCTGAAGTCTATTCTTTACTATCATTAATGAAATCACTATTGTCTTACTTAAGGATTCCTCTCTCTGTCTGTGCGTGTTCTTTCATGTCTTGTCATCCATGATTT

mRNA sequence

ATGGAGGCAATTCACCGATTCTCCTTCCGTCTCTTCCCAATCTCTCTTGCCGAAAGGTGTCGCAAGCCTTCTTTACTCGCACCTAATTTTCGGAAACTCATTCACAGGACCATTTCTTCATCGCCCAACATTCCAAAATTCATTCCGGCCCCCAAAACCTACGGTTCCTCTTCAACTTCCATTGCCAAAGCCGGTTGGTTTCTTGGTCTTGGAGAGCAGAAGAAAATGAGCTTACCGTCGATTGTGAAGGCTGGTGACCCAGTTTTGCACGAGCCTGCTCGTGAAGTTGATCCTAAGGAAATAGGGTCGGAGAAGATTCAGAAGATAATCGACGATATGGTTTTGACCATGAGGAAGGCTCCTGGAGTCGGTCTTGCAGCTCCCCAGATTGGAATTCCATTAAGGATAATTGTTTTGGAAGATACTAAAGAATATATAAGTTATGCACCTAAGGAGGAGATCAAAGCACAAGATAGGCGCCCCTTTGATCTTCTGTTTTATTGAGTCAGGTGATCATAAACCCAAAGCTAAAAAGTAAAAGCAACAAGACTGCATTGTTTTTTGAAGGGTGCCTCAGGTAAGATGCAGATTGGCAATCCACTTTTCTCTCTCAGTTCTTTCTCTGAAGTGGTTTGCAAAACCAATTTATTGTTTCTCTTCCTTTCCCTTTCCCTCTTCTTCCTTGCATGCTCTCAGGTCCTATCTTGCTAATTTGAGAAATGGAAAATGAACTTCCAAAGTACTAGCTCGATCATTTCTTAAAAGTTAGTGTACTTTTTCTCTTTATCCTAGAAAATATGTGTAGCGAATAAAAATGAACAAAATTAAATCATCTCGAGTTGACCTAGTTGTTAGGGAATGACCTTGACAAATGGCTAAGAGTTTATGAGTTCAATTCATTGTGACCACCTACCTAGGTTTTAAATAACCTATAAGTTTTTTTGACATTTAAATGTTGTAGGATTAAGCAGGTTGTTTATGAGATTAGTCCAAGTGTGAGTATTTAAAACAAAAAAAAAAAGAGAAAAAATCAAACAAATGTGTGAGTGAAATTTATGTGCTTCTGTGTACAGGCTCCATCCTACAATAAAAATGATGCCACAGTAGCATTGTTTATCTACACGTTGAGATTATATAACTAGTCTCTTCAATGTTCAATTTGACTCAATGTTAAAACATTTATGTGGTTCTAAAGCCGTGGATAGGCAACAGGGGCTCAATCAATCCAACGTAGAAATTTCTCTTGGATTCAATTGAGTTAATGATCAGTGGCTTGCTTGCCCTCCTAAACAAAGGCACGCCACTTTGTGCAAGCTGTTATGTACTAATATTCACTTCTAACAGACTAATTAATATTGACCTCTCAATCAACACTTCTAATATGTATGAAAACCAAAAGTCATATTCCTACCGTAAAACGATGCCATAGTAGCGTTGTTTATTTACACTTCGATATTATAGTTTATGAGAAAGATGAACTGTTTAGTCCCTTCTTTCATTTAGATAATCTGGTTGATGTGAAAGTATAAGCTTTCTTGCTCTTTTCTAAGTTTTCCTTTTAACAGATTGTTTCCAGTTGAGGCTGTATCTGAAGTCTATTCTTTACTATCATTAATGAAATCACTATTGTCTTACTTAAGGATTCCTCTCTCTGTCTGTGCGTGTTCTTTCATGTCTTGTCATCCATGATTT

Coding sequence (CDS)

ATGGAGGCAATTCACCGATTCTCCTTCCGTCTCTTCCCAATCTCTCTTGCCGAAAGGTGTCGCAAGCCTTCTTTACTCGCACCTAATTTTCGGAAACTCATTCACAGGACCATTTCTTCATCGCCCAACATTCCAAAATTCATTCCGGCCCCCAAAACCTACGGTTCCTCTTCAACTTCCATTGCCAAAGCCGGTTGGTTTCTTGGTCTTGGAGAGCAGAAGAAAATGAGCTTACCGTCGATTGTGAAGGCTGGTGACCCAGTTTTGCACGAGCCTGCTCGTGAAGTTGATCCTAAGGAAATAGGGTCGGAGAAGATTCAGAAGATAATCGACGATATGGTTTTGACCATGAGGAAGGCTCCTGGAGTCGGTCTTGCAGCTCCCCAGATTGGAATTCCATTAAGGATAATTGTTTTGGAAGATACTAAAGAATATATAAGTTATGCACCTAAGGAGGAGATCAAAGCACAAGATAGGCGCCCCTTTGATCTTCTGTTTTATTGA

Protein sequence

MEAIHRFSFRLFPISLAERCRKPSLLAPNFRKLIHRTISSSPNIPKFIPAPKTYGSSSTSIAKAGWFLGLGEQKKMSLPSIVKAGDPVLHEPAREVDPKEIGSEKIQKIIDDMVLTMRKAPGVGLAAPQIGIPLRIIVLEDTKEYISYAPKEEIKAQDRRPFDLLFY

Homology

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BLAST of Pay0010341 vs. ExPASy Swiss-Prot
Match: Q9FV53 (Peptide deformylase 1A, chloroplastic/mitochondrial OS=Arabidopsis thaliana OX=3702 GN=PDF1A PE=1 SV=3)

HSP 1 Score: 184.1 bits (466), Expect = 1.3e-45
Identity = 102/168 (60.71%), Postives = 119/168 (70.83%), Query Frame = 0


Query: 1   MEAIHRFSFRLFPISLAERCR--KPSLLAPNFRKLIHRTISSSPNIPKFIPAPKTYGSSS 60
           ME + R S RL P+S A  CR  +  +  P    L++R + + P             SSS
Sbjct: 11  METLFRVSLRLLPVSAAVTCRSIRFPVSRPGSSHLLNRKLYNLPT-----------SSSS 70

Query: 61  TSIAKAGWFLGLGE-QKKMSLPSIVKAGDPVLHEPAREVDPKEIGSEKIQKIIDDMVLTM 120
           +   KAGW LGLGE +KK+ LP IV +GDPVLHE AREVDP EIGSE+IQKIIDDM+  M
Sbjct: 71  SLSTKAGWLLGLGEKKKKVDLPEIVASGDPVLHEKAREVDPGEIGSERIQKIIDDMIKVM 130

Query: 121 RKAPGVGLAAPQIGIPLRIIVLEDTKEYISYAPKEEIKAQDRRPFDLL 166
           R APGVGLAAPQIG+PLRIIVLEDTKEYISYAPKEEI AQ+RR FDL+
Sbjct: 131 RLAPGVGLAAPQIGVPLRIIVLEDTKEYISYAPKEEILAQERRHFDLM 167

[Close]

BLAST of Pay0010341 vs. ExPASy Swiss-Prot
Match: Q9FUZ0 (Peptide deformylase 1A, chloroplastic OS=Solanum lycopersicum OX=4081 GN=PDF1A PE=2 SV=1)

HSP 1 Score: 173.7 bits (439), Expect = 1.7e-42
Identity = 93/177 (52.54%), Postives = 122/177 (68.93%), Query Frame = 0


Query: 1   MEAIHRFSFRLFPISLAER----CRKPSLLAPNFRKL--------IHRTISSSPNIPKFI 60
           ME   R + R+  +    +    C+K + L  +  +L        I   +   P++   +
Sbjct: 2   MERFPRLAQRVLSVPFTPKYLKSCKKTNPLTSHLMQLRGSQRPIFIQWNLQGRPSVCTDL 61

Query: 61  PAPKTYGSSSTSIAKAGWFLGLGEQKKMSLPSIVKAGDPVLHEPAREVDPKEIGSEKIQK 120
            + K Y S++   A+AGWFLGLGE+KK ++P IVKAGDPVLHEP++++  +EIGSE+IQK
Sbjct: 62  ISKKNYSSAT---ARAGWFLGLGEKKKQAMPDIVKAGDPVLHEPSQDIPLEEIGSERIQK 121

Query: 121 IIDDMVLTMRKAPGVGLAAPQIGIPLRIIVLEDTKEYISYAPKEEIKAQDRRPFDLL 166
           II++MV  MR APGVGLAAPQIGIPL+IIVLEDT EYISYAPK+E KAQDRRPF LL
Sbjct: 122 IIEEMVKVMRNAPGVGLAAPQIGIPLKIIVLEDTNEYISYAPKDETKAQDRRPFGLL 175

[Close]

BLAST of Pay0010341 vs. ExPASy Swiss-Prot
Match: B6RGY0 (Peptide deformylase 1A, chloroplastic OS=Oryza sativa subsp. japonica OX=39947 GN=PDF1A PE=2 SV=1)

HSP 1 Score: 145.2 bits (365), Expect = 6.6e-34
Identity = 76/125 (60.80%), Postives = 91/125 (72.80%), Query Frame = 0


Query: 49  PAPKTYGSSSTSIAKAGWFLGL-------GEQKKMSL-PSIVKAGDPVLHEPAREVDPKE 108
           P  + + S   S    GW  GL       G    M++ P  VKAGDPVLHEPA++V P +
Sbjct: 34  PGGRRWSSVRASAGGGGWLSGLLGGKGGGGAPTAMTVTPGTVKAGDPVLHEPAQDVAPGD 93

Query: 109 IGSEKIQKIIDDMVLTMRKAPGVGLAAPQIGIPLRIIVLEDTKEYISYAPKEEIKAQDRR 166
           I SEK+Q +ID MV  MRKAPGVGLAAPQIG+PL+IIVLEDT+EYISYAPK++I+AQDRR
Sbjct: 94  IPSEKVQGVIDRMVAVMRKAPGVGLAAPQIGVPLKIIVLEDTQEYISYAPKKDIEAQDRR 153

[Close]

BLAST of Pay0010341 vs. ExPASy Swiss-Prot
Match: Q7NJV3 (Peptide deformylase 1 OS=Gloeobacter violaceus (strain ATCC 29082 / PCC 7421) OX=251221 GN=def1 PE=3 SV=1)

HSP 1 Score: 78.6 bits (192), Expect = 7.6e-14
Identity = 39/81 (48.15%), Postives = 55/81 (67.90%), Query Frame = 0


Query: 81  IVKAGDPVLHEPAREVDPKEIGSEKIQKIIDDMVLTMRKAPGVGLAAPQIGIPLRIIVLE 140
           IVK GDPVL   A+ ++  EI SE IQ++I  M   MR+APGVGLAAPQ+G+ ++++V+E
Sbjct: 48  IVKTGDPVLRLTAKPLNSDEIQSEAIQQLIAAMAERMREAPGVGLAAPQVGVSVQLVVIE 107

Query: 141 DTKEYISYAPKEEIKAQDRRP 162
           D  EYI      E + ++R P
Sbjct: 108 DRPEYIERLSGAERREREREP 128

[Close]

BLAST of Pay0010341 vs. ExPASy Swiss-Prot
Match: Q72S74 (Peptide deformylase OS=Leptospira interrogans serogroup Icterohaemorrhagiae serovar copenhageni (strain Fiocruz L1-130) OX=267671 GN=def PE=3 SV=1)

HSP 1 Score: 62.4 bits (150), Expect = 5.6e-09
Identity = 34/72 (47.22%), Postives = 49/72 (68.06%), Query Frame = 0


Query: 76  MSLPSIVKAGDPVLHEPAREVDPKEIGSEKIQKIIDDMVLTMRKAPGVGLAAPQIGIPLR 135
           MS+  I++ GDP+L + +  V   EI +++ +K+I DM  TMR A GVGLAAPQIGI  +
Sbjct: 1   MSVRKILRMGDPILRKISEPVTEDEIQTKEFKKLIRDMFDTMRHAEGVGLAAPQIGILKQ 60

Query: 136 IIVL--EDTKEY 146
           I+V+  ED + Y
Sbjct: 61  IVVVGSEDNERY 72

[Close]

BLAST of Pay0010341 vs. ExPASy TrEMBL
Match: A0A5D3E1C7 (Peptide deformylase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold655G001640 PE=3 SV=1)

HSP 1 Score: 326.2 bits (835), Expect = 7.7e-86
Identity = 164/165 (99.39%), Postives = 164/165 (99.39%), Query Frame = 0


Query: 1   MEAIHRFSFRLFPISLAERCRKPSLLAPNFRKLIHRTISSSPNIPKFIPAPKTYGSSSTS 60
           MEAIHRFSFRLFPISLAERCRKPSLLAPNFRKLIHRTISSSPNIPKFIPAPKTY SSSTS
Sbjct: 1   MEAIHRFSFRLFPISLAERCRKPSLLAPNFRKLIHRTISSSPNIPKFIPAPKTYSSSSTS 60

Query: 61  IAKAGWFLGLGEQKKMSLPSIVKAGDPVLHEPAREVDPKEIGSEKIQKIIDDMVLTMRKA 120
           IAKAGWFLGLGEQKKMSLPSIVKAGDPVLHEPAREVDPKEIGSEKIQKIIDDMVLTMRKA
Sbjct: 61  IAKAGWFLGLGEQKKMSLPSIVKAGDPVLHEPAREVDPKEIGSEKIQKIIDDMVLTMRKA 120

Query: 121 PGVGLAAPQIGIPLRIIVLEDTKEYISYAPKEEIKAQDRRPFDLL 166
           PGVGLAAPQIGIPLRIIVLEDTKEYISYAPKEEIKAQDRRPFDLL
Sbjct: 121 PGVGLAAPQIGIPLRIIVLEDTKEYISYAPKEEIKAQDRRPFDLL 165

[Close]

BLAST of Pay0010341 vs. ExPASy TrEMBL
Match: A0A1S3BY63 (Peptide deformylase OS=Cucumis melo OX=3656 GN=LOC103494711 PE=3 SV=1)

HSP 1 Score: 323.2 bits (827), Expect = 6.5e-85
Identity = 163/165 (98.79%), Postives = 163/165 (98.79%), Query Frame = 0


Query: 1   MEAIHRFSFRLFPISLAERCRKPSLLAPNFRKLIHRTISSSPNIPKFIPAPKTYGSSSTS 60
           MEAIHRFSFRLFPISLAERCRKPSLLAPNFRKLIHRTISSSPNIPKFIPA KTY SSSTS
Sbjct: 1   MEAIHRFSFRLFPISLAERCRKPSLLAPNFRKLIHRTISSSPNIPKFIPAXKTYSSSSTS 60

Query: 61  IAKAGWFLGLGEQKKMSLPSIVKAGDPVLHEPAREVDPKEIGSEKIQKIIDDMVLTMRKA 120
           IAKAGWFLGLGEQKKMSLPSIVKAGDPVLHEPAREVDPKEIGSEKIQKIIDDMVLTMRKA
Sbjct: 61  IAKAGWFLGLGEQKKMSLPSIVKAGDPVLHEPAREVDPKEIGSEKIQKIIDDMVLTMRKA 120

Query: 121 PGVGLAAPQIGIPLRIIVLEDTKEYISYAPKEEIKAQDRRPFDLL 166
           PGVGLAAPQIGIPLRIIVLEDTKEYISYAPKEEIKAQDRRPFDLL
Sbjct: 121 PGVGLAAPQIGIPLRIIVLEDTKEYISYAPKEEIKAQDRRPFDLL 165

[Close]

BLAST of Pay0010341 vs. ExPASy TrEMBL
Match: A0A0A0KWR7 (Peptide deformylase OS=Cucumis sativus OX=3659 GN=Csa_4G004880 PE=3 SV=1)

HSP 1 Score: 316.6 bits (810), Expect = 6.1e-83
Identity = 158/165 (95.76%), Postives = 160/165 (96.97%), Query Frame = 0


Query: 1   MEAIHRFSFRLFPISLAERCRKPSLLAPNFRKLIHRTISSSPNIPKFIPAPKTYGSSSTS 60
           MEAIHRFSFRLFPISLAERCRKPSLL PNFRKLIHR ISSSPNIPKFIP PKTY SSSTS
Sbjct: 1   MEAIHRFSFRLFPISLAERCRKPSLLPPNFRKLIHRPISSSPNIPKFIPVPKTYSSSSTS 60

Query: 61  IAKAGWFLGLGEQKKMSLPSIVKAGDPVLHEPAREVDPKEIGSEKIQKIIDDMVLTMRKA 120
           IAKAGWFLGLGEQKKMSLPSIVKAGDPVLHEPAREVDPKEIGSEK+QKIIDDM+LTMRKA
Sbjct: 61  IAKAGWFLGLGEQKKMSLPSIVKAGDPVLHEPAREVDPKEIGSEKVQKIIDDMILTMRKA 120

Query: 121 PGVGLAAPQIGIPLRIIVLEDTKEYISYAPKEEIKAQDRRPFDLL 166
           PGVGLAAPQIGIPLRIIVLEDTKEYISYAPKEEIKAQDRR FDLL
Sbjct: 121 PGVGLAAPQIGIPLRIIVLEDTKEYISYAPKEEIKAQDRRSFDLL 165

[Close]

BLAST of Pay0010341 vs. ExPASy TrEMBL
Match: A0A6J1DL13 (Peptide deformylase OS=Momordica charantia OX=3673 GN=LOC111021042 PE=3 SV=1)

HSP 1 Score: 271.6 bits (693), Expect = 2.3e-69
Identity = 140/167 (83.83%), Postives = 145/167 (86.83%), Query Frame = 0


Query: 1   MEAIHRFSFRLFPISLAERCRKPSLLAPNFRKLIHRTISS--SPNIPKFIPAPKTYGSSS 60
           M+ IHRFSFRLFPISLA  C  PS   P F KL HR  SS     IPKF+P  +TY SSS
Sbjct: 1   MDTIHRFSFRLFPISLAHCCLNPSSATPKFPKLFHRPTSSFDFDCIPKFVPPRQTYSSSS 60

Query: 61  TSIAKAGWFLGLGEQKKMSLPSIVKAGDPVLHEPAREVDPKEIGSEKIQKIIDDMVLTMR 120
           TSIAKAGWFLGLGEQKKMSLP+IVKAGDPVLHEPAREVDPKEIGSEKIQKIIDDMVL MR
Sbjct: 61  TSIAKAGWFLGLGEQKKMSLPTIVKAGDPVLHEPAREVDPKEIGSEKIQKIIDDMVLAMR 120

Query: 121 KAPGVGLAAPQIGIPLRIIVLEDTKEYISYAPKEEIKAQDRRPFDLL 166
           KAPGVGLAAPQIGIPLRIIVLEDT+EYISYAPKEEIKAQDRRPFDLL
Sbjct: 121 KAPGVGLAAPQIGIPLRIIVLEDTQEYISYAPKEEIKAQDRRPFDLL 167

[Close]

BLAST of Pay0010341 vs. ExPASy TrEMBL
Match: A0A6J1KDU7 (Peptide deformylase OS=Cucurbita maxima OX=3661 GN=LOC111493439 PE=3 SV=1)

HSP 1 Score: 260.8 bits (665), Expect = 4.0e-66
Identity = 132/165 (80.00%), Postives = 140/165 (84.85%), Query Frame = 0


Query: 1   MEAIHRFSFRLFPISLAERCRKPSLLAPNFRKLIHRTISSSPNIPKFIPAPKTYGSSSTS 60
           ME +HRFSFRL P SLAERC KPS   P FR LI    SSS +IPKFIPA K+Y SS + 
Sbjct: 1   METVHRFSFRLLPFSLAERCLKPSSATPRFRNLICGPTSSSNHIPKFIPARKSYSSSFSP 60

Query: 61  IAKAGWFLGLGEQKKMSLPSIVKAGDPVLHEPAREVDPKEIGSEKIQKIIDDMVLTMRKA 120
           IAKAGWFLGLG++ K SLP IV AGDPVLHEPAREVDPKEIGS+KIQKIIDDMV+ MR A
Sbjct: 61  IAKAGWFLGLGDKNKTSLPKIVNAGDPVLHEPAREVDPKEIGSDKIQKIIDDMVVAMRNA 120

Query: 121 PGVGLAAPQIGIPLRIIVLEDTKEYISYAPKEEIKAQDRRPFDLL 166
           PGVGLAA QIGIPLRIIVLEDTKEYISYAPKEEIKAQDRRPFDLL
Sbjct: 121 PGVGLAATQIGIPLRIIVLEDTKEYISYAPKEEIKAQDRRPFDLL 165

[Close]

BLAST of Pay0010341 vs. NCBI nr
Match: KAA0044431.1 (peptide deformylase 1A [Cucumis melo var. makuwa] >TYK29558.1 peptide deformylase 1A [Cucumis melo var. makuwa])

HSP 1 Score: 326.2 bits (835), Expect = 1.6e-85
Identity = 164/165 (99.39%), Postives = 164/165 (99.39%), Query Frame = 0


Query: 1   MEAIHRFSFRLFPISLAERCRKPSLLAPNFRKLIHRTISSSPNIPKFIPAPKTYGSSSTS 60
           MEAIHRFSFRLFPISLAERCRKPSLLAPNFRKLIHRTISSSPNIPKFIPAPKTY SSSTS
Sbjct: 1   MEAIHRFSFRLFPISLAERCRKPSLLAPNFRKLIHRTISSSPNIPKFIPAPKTYSSSSTS 60

Query: 61  IAKAGWFLGLGEQKKMSLPSIVKAGDPVLHEPAREVDPKEIGSEKIQKIIDDMVLTMRKA 120
           IAKAGWFLGLGEQKKMSLPSIVKAGDPVLHEPAREVDPKEIGSEKIQKIIDDMVLTMRKA
Sbjct: 61  IAKAGWFLGLGEQKKMSLPSIVKAGDPVLHEPAREVDPKEIGSEKIQKIIDDMVLTMRKA 120

Query: 121 PGVGLAAPQIGIPLRIIVLEDTKEYISYAPKEEIKAQDRRPFDLL 166
           PGVGLAAPQIGIPLRIIVLEDTKEYISYAPKEEIKAQDRRPFDLL
Sbjct: 121 PGVGLAAPQIGIPLRIIVLEDTKEYISYAPKEEIKAQDRRPFDLL 165

[Close]

BLAST of Pay0010341 vs. NCBI nr
Match: XP_008454248.1 (PREDICTED: LOW QUALITY PROTEIN: peptide deformylase 1A, chloroplastic/mitochondrial [Cucumis melo])

HSP 1 Score: 323.2 bits (827), Expect = 1.4e-84
Identity = 163/165 (98.79%), Postives = 163/165 (98.79%), Query Frame = 0


Query: 1   MEAIHRFSFRLFPISLAERCRKPSLLAPNFRKLIHRTISSSPNIPKFIPAPKTYGSSSTS 60
           MEAIHRFSFRLFPISLAERCRKPSLLAPNFRKLIHRTISSSPNIPKFIPA KTY SSSTS
Sbjct: 1   MEAIHRFSFRLFPISLAERCRKPSLLAPNFRKLIHRTISSSPNIPKFIPAXKTYSSSSTS 60

Query: 61  IAKAGWFLGLGEQKKMSLPSIVKAGDPVLHEPAREVDPKEIGSEKIQKIIDDMVLTMRKA 120
           IAKAGWFLGLGEQKKMSLPSIVKAGDPVLHEPAREVDPKEIGSEKIQKIIDDMVLTMRKA
Sbjct: 61  IAKAGWFLGLGEQKKMSLPSIVKAGDPVLHEPAREVDPKEIGSEKIQKIIDDMVLTMRKA 120

Query: 121 PGVGLAAPQIGIPLRIIVLEDTKEYISYAPKEEIKAQDRRPFDLL 166
           PGVGLAAPQIGIPLRIIVLEDTKEYISYAPKEEIKAQDRRPFDLL
Sbjct: 121 PGVGLAAPQIGIPLRIIVLEDTKEYISYAPKEEIKAQDRRPFDLL 165

[Close]

BLAST of Pay0010341 vs. NCBI nr
Match: XP_004152208.2 (peptide deformylase 1A, chloroplastic/mitochondrial [Cucumis sativus] >KGN52877.1 hypothetical protein Csa_015090 [Cucumis sativus])

HSP 1 Score: 316.6 bits (810), Expect = 1.3e-82
Identity = 158/165 (95.76%), Postives = 160/165 (96.97%), Query Frame = 0


Query: 1   MEAIHRFSFRLFPISLAERCRKPSLLAPNFRKLIHRTISSSPNIPKFIPAPKTYGSSSTS 60
           MEAIHRFSFRLFPISLAERCRKPSLL PNFRKLIHR ISSSPNIPKFIP PKTY SSSTS
Sbjct: 1   MEAIHRFSFRLFPISLAERCRKPSLLPPNFRKLIHRPISSSPNIPKFIPVPKTYSSSSTS 60

Query: 61  IAKAGWFLGLGEQKKMSLPSIVKAGDPVLHEPAREVDPKEIGSEKIQKIIDDMVLTMRKA 120
           IAKAGWFLGLGEQKKMSLPSIVKAGDPVLHEPAREVDPKEIGSEK+QKIIDDM+LTMRKA
Sbjct: 61  IAKAGWFLGLGEQKKMSLPSIVKAGDPVLHEPAREVDPKEIGSEKVQKIIDDMILTMRKA 120

Query: 121 PGVGLAAPQIGIPLRIIVLEDTKEYISYAPKEEIKAQDRRPFDLL 166
           PGVGLAAPQIGIPLRIIVLEDTKEYISYAPKEEIKAQDRR FDLL
Sbjct: 121 PGVGLAAPQIGIPLRIIVLEDTKEYISYAPKEEIKAQDRRSFDLL 165

[Close]

BLAST of Pay0010341 vs. NCBI nr
Match: XP_038878019.1 (peptide deformylase 1A, chloroplastic/mitochondrial [Benincasa hispida])

HSP 1 Score: 289.7 bits (740), Expect = 1.7e-74
Identity = 146/165 (88.48%), Postives = 151/165 (91.52%), Query Frame = 0


Query: 1   MEAIHRFSFRLFPISLAERCRKPSLLAPNFRKLIHRTISSSPNIPKFIPAPKTYGSSSTS 60
           ME IHRFSFRLFPISLAERC KPS   PNFR  I+R ISSS NIPKFIP  KTY SSSTS
Sbjct: 1   METIHRFSFRLFPISLAERCLKPSSPTPNFRNFIYRAISSSHNIPKFIPVLKTYRSSSTS 60

Query: 61  IAKAGWFLGLGEQKKMSLPSIVKAGDPVLHEPAREVDPKEIGSEKIQKIIDDMVLTMRKA 120
           IAKAGWFLGLGE+KKM LP+IVKAGDPVLHEPAREVDPKEIGSEKIQKIID+MVL MRKA
Sbjct: 61  IAKAGWFLGLGEKKKMGLPTIVKAGDPVLHEPAREVDPKEIGSEKIQKIIDNMVLAMRKA 120

Query: 121 PGVGLAAPQIGIPLRIIVLEDTKEYISYAPKEEIKAQDRRPFDLL 166
           PG+GLAAPQIGIPLRIIVLEDTKEYISYAPKEEIKAQDRRPFDLL
Sbjct: 121 PGIGLAAPQIGIPLRIIVLEDTKEYISYAPKEEIKAQDRRPFDLL 165

[Close]

BLAST of Pay0010341 vs. NCBI nr
Match: XP_022153571.1 (peptide deformylase 1A, chloroplastic/mitochondrial [Momordica charantia])

HSP 1 Score: 271.6 bits (693), Expect = 4.7e-69
Identity = 140/167 (83.83%), Postives = 145/167 (86.83%), Query Frame = 0


Query: 1   MEAIHRFSFRLFPISLAERCRKPSLLAPNFRKLIHRTISS--SPNIPKFIPAPKTYGSSS 60
           M+ IHRFSFRLFPISLA  C  PS   P F KL HR  SS     IPKF+P  +TY SSS
Sbjct: 1   MDTIHRFSFRLFPISLAHCCLNPSSATPKFPKLFHRPTSSFDFDCIPKFVPPRQTYSSSS 60

Query: 61  TSIAKAGWFLGLGEQKKMSLPSIVKAGDPVLHEPAREVDPKEIGSEKIQKIIDDMVLTMR 120
           TSIAKAGWFLGLGEQKKMSLP+IVKAGDPVLHEPAREVDPKEIGSEKIQKIIDDMVL MR
Sbjct: 61  TSIAKAGWFLGLGEQKKMSLPTIVKAGDPVLHEPAREVDPKEIGSEKIQKIIDDMVLAMR 120

Query: 121 KAPGVGLAAPQIGIPLRIIVLEDTKEYISYAPKEEIKAQDRRPFDLL 166
           KAPGVGLAAPQIGIPLRIIVLEDT+EYISYAPKEEIKAQDRRPFDLL
Sbjct: 121 KAPGVGLAAPQIGIPLRIIVLEDTQEYISYAPKEEIKAQDRRPFDLL 167

[Close]

BLAST of Pay0010341 vs. TAIR 10
Match: AT1G15390.1 (peptide deformylase 1A )

HSP 1 Score: 184.1 bits (466), Expect = 9.1e-47
Identity = 102/168 (60.71%), Postives = 119/168 (70.83%), Query Frame = 0


Query: 1   MEAIHRFSFRLFPISLAERCR--KPSLLAPNFRKLIHRTISSSPNIPKFIPAPKTYGSSS 60
           ME + R S RL P+S A  CR  +  +  P    L++R + + P             SSS
Sbjct: 11  METLFRVSLRLLPVSAAVTCRSIRFPVSRPGSSHLLNRKLYNLPT-----------SSSS 70

Query: 61  TSIAKAGWFLGLGE-QKKMSLPSIVKAGDPVLHEPAREVDPKEIGSEKIQKIIDDMVLTM 120
           +   KAGW LGLGE +KK+ LP IV +GDPVLHE AREVDP EIGSE+IQKIIDDM+  M
Sbjct: 71  SLSTKAGWLLGLGEKKKKVDLPEIVASGDPVLHEKAREVDPGEIGSERIQKIIDDMIKVM 130

Query: 121 RKAPGVGLAAPQIGIPLRIIVLEDTKEYISYAPKEEIKAQDRRPFDLL 166
           R APGVGLAAPQIG+PLRIIVLEDTKEYISYAPKEEI AQ+RR FDL+
Sbjct: 131 RLAPGVGLAAPQIGVPLRIIVLEDTKEYISYAPKEEILAQERRHFDLM 167

[Close]

BLAST of Pay0010341 vs. TAIR 10
Match: AT5G14660.1 (peptide deformylase 1B )

HSP 1 Score: 45.8 bits (107), Expect = 3.9e-05
Identity = 27/89 (30.34%), Postives = 47/89 (52.81%), Query Frame = 0


Query: 81  IVKAGDPVLHEPAREVDPKEIGSEKIQKIIDDMVLTMRKAPGVGLAAPQIGIPLRIIVLE 140
           IV+  DP+L    + +D   I  E ++ ++D M   M K  G+GL+APQ+G+ ++++V  
Sbjct: 83  IVEYPDPILRAKNKRID---IFDENLKNLVDAMFDVMYKTDGIGLSAPQVGLNVQLMVFN 142

Query: 141 ------DTKEYISYAPKEEIKAQDRRPFD 164
                 + KE +   PK +  +    PFD
Sbjct: 143 PAGEPGEGKEIVLVNPKIKKYSDKLVPFD 168

[Close]

BLAST of Pay0010341 vs. TAIR 10
Match: AT5G14660.2 (peptide deformylase 1B )

HSP 1 Score: 45.8 bits (107), Expect = 3.9e-05
Identity = 27/89 (30.34%), Postives = 47/89 (52.81%), Query Frame = 0


Query: 81  IVKAGDPVLHEPAREVDPKEIGSEKIQKIIDDMVLTMRKAPGVGLAAPQIGIPLRIIVLE 140
           IV+  DP+L    + +D   I  E ++ ++D M   M K  G+GL+APQ+G+ ++++V  
Sbjct: 83  IVEYPDPILRAKNKRID---IFDENLKNLVDAMFDVMYKTDGIGLSAPQVGLNVQLMVFN 142

Query: 141 ------DTKEYISYAPKEEIKAQDRRPFD 164
                 + KE +   PK +  +    PFD
Sbjct: 143 PAGEPGEGKEIVLVNPKIKKYSDKLVPFD 168

The following BLAST results are available for this feature:

BLAST of Pay0010341 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9FV53	1.3e-45	60.71	Peptide deformylase 1A, chloroplastic/mitochondrial OS=Arabidopsis thaliana OX=3...	[more]
Q9FUZ0	1.7e-42	52.54	Peptide deformylase 1A, chloroplastic OS=Solanum lycopersicum OX=4081 GN=PDF1A P...	[more]
B6RGY0	6.6e-34	60.80	Peptide deformylase 1A, chloroplastic OS=Oryza sativa subsp. japonica OX=39947 G...	[more]
Q7NJV3	7.6e-14	48.15	Peptide deformylase 1 OS=Gloeobacter violaceus (strain ATCC 29082 / PCC 7421) OX...	[more]
Q72S74	5.6e-09	47.22	Peptide deformylase OS=Leptospira interrogans serogroup Icterohaemorrhagiae sero...	[more]

BLAST of Pay0010341 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3E1C7	7.7e-86	99.39	Peptide deformylase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold655G...	[more]
A0A1S3BY63	6.5e-85	98.79	Peptide deformylase OS=Cucumis melo OX=3656 GN=LOC103494711 PE=3 SV=1	[more]
A0A0A0KWR7	6.1e-83	95.76	Peptide deformylase OS=Cucumis sativus OX=3659 GN=Csa_4G004880 PE=3 SV=1	[more]
A0A6J1DL13	2.3e-69	83.83	Peptide deformylase OS=Momordica charantia OX=3673 GN=LOC111021042 PE=3 SV=1	[more]
A0A6J1KDU7	4.0e-66	80.00	Peptide deformylase OS=Cucurbita maxima OX=3661 GN=LOC111493439 PE=3 SV=1	[more]

BLAST of Pay0010341 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0044431.1	1.6e-85	99.39	peptide deformylase 1A [Cucumis melo var. makuwa] >TYK29558.1 peptide deformylas...	[more]
XP_008454248.1	1.4e-84	98.79	PREDICTED: LOW QUALITY PROTEIN: peptide deformylase 1A, chloroplastic/mitochondr...	[more]
XP_004152208.2	1.3e-82	95.76	peptide deformylase 1A, chloroplastic/mitochondrial [Cucumis sativus] >KGN52877....	[more]
XP_038878019.1	1.7e-74	88.48	peptide deformylase 1A, chloroplastic/mitochondrial [Benincasa hispida]	[more]
XP_022153571.1	4.7e-69	83.83	peptide deformylase 1A, chloroplastic/mitochondrial [Momordica charantia]	[more]

BLAST of Pay0010341 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G15390.1	9.1e-47	60.71	peptide deformylase 1A	[more]
AT5G14660.1	3.9e-05	30.34	peptide deformylase 1B	[more]
AT5G14660.2	3.9e-05	30.34	peptide deformylase 1B	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (Payzawat) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR023635	Peptide deformylase	PFAM	PF01327	Pep_deformylase	coord: 80..152 e-value: 5.2E-18 score: 65.2
IPR023635	Peptide deformylase	PANTHER	PTHR10458	PEPTIDE DEFORMYLASE	coord: 1..165
IPR036821	Peptide deformylase superfamily	GENE3D	3.90.45.10	Peptide deformylase	coord: 76..167 e-value: 1.0E-27 score: 98.4
IPR036821	Peptide deformylase superfamily	SUPERFAMILY	56420	Peptide deformylase	coord: 80..144
None	No IPR available	PANTHER	PTHR10458:SF18	PEPTIDE DEFORMYLASE	coord: 1..165

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Pay0010341.1	Pay0010341.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0043686	co-translational protein modification
biological_process	GO:0031365	N-terminal protein amino acid modification
biological_process	GO:0018206	peptidyl-methionine modification
biological_process	GO:0006412	translation
cellular_component	GO:0009507	chloroplast
cellular_component	GO:0005739	mitochondrion
molecular_function	GO:0046872	metal ion binding
molecular_function	GO:0042586	peptide deformylase activity