Pay0010173 (gene) Melon (Payzawat) v1

Overview


Name	Pay0010173
Type	gene
Organism	Cucumis melo L. var. inodorus cv. Payzawat (Melon (Payzawat) v1)
Description	Protein GrpE-like
Location	chr01: 12934005 .. 12935349 (-)
RNA-Seq Expression	Pay0010173
Synteny	Pay0010173

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGACGATCAAGTAAAATCACTGGCACGGAAGGAATAGCTCCTAAAGTCTAAGCACAATGAGATTGAGAAAATGCAAGATGTAGTAGGCTCTTATGCAGAAATGGAGAATGTTATTGACAGAACAAGACGTGAAGCAGAGAATTCAAAGAAGTTTGCCATTCAGGATTTTTGATTGTTGTTTTCCTAGTGCTTCAAATTTTATCTTGGGTTTCCTCCCGTTACTCCTTCGATTAAACACAAGCTTATGTGTGGTAACATATGCTTGACAGAATTTTGCAAAGAGATTGCTTGATGTTGTGGATAACTTGGGAAGAGCTTCTTCTGTTGTTAAAGGTAGAAAGGATTCAAGTGGAGCCATACCTTTTCTAAAAACCCTTCCAGAAGTGGCCGGTATGACCGAGAAACAGCTTATGGAGGTAAAGCTTTCCATTTTGCATCGACGTTGTGTAATTGGCATGAGCTATTCAACCTTTCATGAAGAAAACCACAATTTTAGTTTGTTCTGATGCTTCAAACACTTTTTCAGGTATTTAAGTAAGTCCAGGGTCGAGAAATTTGAGCCTACCAAATGAACCATTTGATCCGCATAAGCATTATGCTGTATTTTAGACACTGGATGGTCTAAACCAGAAAGCACTGTGGCTAGTTTCCTCAAGGTATTAGTTCAATTTGTGATCCTATAAATACCTCTGGCATTTGTGTACTTCAAAAAATGGGTAGTTTGAAGATATTTAGTTCATAATCATATGCTAAGGAAAATTCATTGATCAAACTGGAAGGGGGAACTGTCTTTTTAGTCTATGTTTGCTTTCAGTAATGTGAAGTTTGGTCGTTAGTCCTCGGGGTTCATGCTTAGATGGAAATTCTTTGTTCTAATGGTGTCTTTGCTCTTCTTTGGAGGCTTTTATTCGAAAGAAACTCAGGATTTTTCATGTCGATAATCCAAGTAGGGATTTTTTCGGGATCTAGTTTTTCGTTTTGCTTCTACTTGGTCTTCCACCTCTAAATTCTTTTGTGTTTATAGCCTAACTTGTCTTTACACCAGTTTTACTTCCTTTCTGTAACTTGATGCGTTCGGATGTCTCATCTTCCCCACTTTTGTATTTCCTTTTGTAGATGAAAGTTAAGTTTCTAATAAAGAATCGGTTGATAGTAGGAGCAGTCATGTCAATATGTTATAACAGTTTTATTTGCTTCCAAATTTTTTAAGAACTCAAGACAGTTGCTGTTTAGTTCAGGAGCTTGGTTTGATAGACATTGCATTGATTTTCTCATGTTTTGTACAACAGTCTGGATATACGCTACATGATCAAGTTCTATGACCAGCCAAGGTTGGTATGACT

mRNA sequence

ATGGACGATCAAAATTTTGCAAAGAGATTGCTTGATGTTGTGGATAACTTGGGAAGAGCTTCTTCTGTTGTTAAAGGTAGAAAGGATTCAAGTGGAGCCATACCTTTTCTAAAAACCCTTCCAGAAGTGGCCGGTATGACCGAGAAACAGCTTATGGAGGTATTTAAGTAAGTCCAGGGTCGAGAAATTTGAGCCTACCAAATGAACCATTTGATCCGCATAAGCATTATGCTGTATTTTAGACACTGGATGGTCTAAACCAGAAAGCACTGTGGCTAGTTTCCTCAAGTCTGGATATACGCTACATGATCAAGTTCTATGACCAGCCAAGGTTGGTATGACT

Coding sequence (CDS)

ATGGACGATCAAAATTTTGCAAAGAGATTGCTTGATGTTGTGGATAACTTGGGAAGAGCTTCTTCTGTTGTTAAAGGTAGAAAGGATTCAAGTGGAGCCATACCTTTTCTAAAAACCCTTCCAGAAGTGGCCGGTATGACCGAGAAACAGCTTATGGAGGTATTTAAGTAA

Protein sequence

MDDQNFAKRLLDVVDNLGRASSVVKGRKDSSGAIPFLKTLPEVAGMTEKQLMEVFK

Homology

[Close]

BLAST of Pay0010173 vs. ExPASy Swiss-Prot
Match: Q8LB47 (GrpE protein homolog 2, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=Mge2 PE=1 SV=1)

HSP 1 Score: 68.2 bits (165), Expect = 3.4e-11
Identity = 40/60 (66.67%), Postives = 42/60 (70.00%), Query Frame = 0


Query: 4   QNFAKRLLDVVDNLGRASSVVK-------GRKDSSGAIPFLKTLPEVAGMTEKQLMEVFK 57
           QNFAK LLDV DNLGRASSVVK         +DS+GA P LKTL E   MTEKQL EVFK
Sbjct: 196 QNFAKSLLDVADNLGRASSVVKESFSKLDTSEDSAGAAPLLKTLLEGVEMTEKQLAEVFK 255

[Close]

BLAST of Pay0010173 vs. ExPASy Swiss-Prot
Match: Q9FLP3 (GrpE protein homolog 1, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=Mge1 PE=2 SV=1)

HSP 1 Score: 58.9 bits (141), Expect = 2.1e-08
Identity = 36/60 (60.00%), Postives = 38/60 (63.33%), Query Frame = 0


Query: 4   QNFAKRLLDVVDNLGRASSVVK-------GRKDSSGAIPFLKTLPEVAGMTEKQLMEVFK 57
           QNFA  LLDV DNL RASSVVK         KD +GA P LK L E   MTEKQL EVF+
Sbjct: 171 QNFATSLLDVADNLERASSVVKESFSKIDTSKDLAGATPLLKNLLEGVEMTEKQLAEVFR 230

[Close]

BLAST of Pay0010173 vs. ExPASy TrEMBL
Match: A0A5D3DHG0 (Protein GrpE-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold142G00200 PE=3 SV=1)

HSP 1 Score: 99.0 bits (245), Expect = 6.7e-18
Identity = 50/52 (96.15%), Postives = 51/52 (98.08%), Query Frame = 0


Query: 4  QNFAKRLLDVVDNLGRASSVVKGRKDSSGAIPFLKTLPEVAGMTEKQLMEVF 56
          +NFAK LLDVVDNLGRASSVVKGRKDSSGAIPFLKTLPEVAGMTEKQLMEVF
Sbjct: 34 KNFAKSLLDVVDNLGRASSVVKGRKDSSGAIPFLKTLPEVAGMTEKQLMEVF 85

[Close]

BLAST of Pay0010173 vs. ExPASy TrEMBL
Match: A0A2P5AS62 (GrpE protein homolog OS=Parasponia andersonii OX=3476 GN=PanWU01x14_305620 PE=3 SV=1)

HSP 1 Score: 72.8 bits (177), Expect = 5.2e-10
Identity = 41/60 (68.33%), Postives = 44/60 (73.33%), Query Frame = 0


Query: 4   QNFAKRLLDVVDNLGRASSVVK-------GRKDSSGAIPFLKTLPEVAGMTEKQLMEVFK 57
           QNFAK LLDV DNLGRASSVVK         KDS+GA+P LKTL E   MTEKQL+EVFK
Sbjct: 209 QNFAKSLLDVADNLGRASSVVKESFSKIDASKDSAGAVPLLKTLLEGVEMTEKQLIEVFK 268

[Close]

BLAST of Pay0010173 vs. ExPASy TrEMBL
Match: A0A6P3YV01 (grpE protein homolog 2, mitochondrial-like isoform X3 OS=Ziziphus jujuba OX=326968 GN=LOC107403622 PE=3 SV=1)

HSP 1 Score: 72.4 bits (176), Expect = 6.7e-10
Identity = 41/60 (68.33%), Postives = 43/60 (71.67%), Query Frame = 0


Query: 4   QNFAKRLLDVVDNLGRASSVVK-------GRKDSSGAIPFLKTLPEVAGMTEKQLMEVFK 57
           QNFAK LLDV DNLGRASSVVK         KDS+GA+P LKTL E   MTEKQL EVFK
Sbjct: 192 QNFAKNLLDVADNLGRASSVVKESFLKIDASKDSTGAVPLLKTLLEGVEMTEKQLAEVFK 251

[Close]

BLAST of Pay0010173 vs. ExPASy TrEMBL
Match: A0A6P3YRN9 (grpE protein homolog 2, mitochondrial-like isoform X1 OS=Ziziphus jujuba OX=326968 GN=LOC107403622 PE=3 SV=1)

HSP 1 Score: 72.4 bits (176), Expect = 6.7e-10
Identity = 41/60 (68.33%), Postives = 43/60 (71.67%), Query Frame = 0


Query: 4   QNFAKRLLDVVDNLGRASSVVK-------GRKDSSGAIPFLKTLPEVAGMTEKQLMEVFK 57
           QNFAK LLDV DNLGRASSVVK         KDS+GA+P LKTL E   MTEKQL EVFK
Sbjct: 221 QNFAKNLLDVADNLGRASSVVKESFLKIDASKDSTGAVPLLKTLLEGVEMTEKQLAEVFK 280

[Close]

BLAST of Pay0010173 vs. ExPASy TrEMBL
Match: A0A6P6FR98 (grpE protein homolog 2, mitochondrial-like isoform X2 OS=Ziziphus jujuba OX=326968 GN=LOC107403622 PE=3 SV=1)

HSP 1 Score: 72.4 bits (176), Expect = 6.7e-10
Identity = 41/60 (68.33%), Postives = 43/60 (71.67%), Query Frame = 0


Query: 4   QNFAKRLLDVVDNLGRASSVVK-------GRKDSSGAIPFLKTLPEVAGMTEKQLMEVFK 57
           QNFAK LLDV DNLGRASSVVK         KDS+GA+P LKTL E   MTEKQL EVFK
Sbjct: 216 QNFAKNLLDVADNLGRASSVVKESFLKIDASKDSTGAVPLLKTLLEGVEMTEKQLAEVFK 275

[Close]

BLAST of Pay0010173 vs. NCBI nr
Match: KAA0049810.1 (protein GrpE-like [Cucumis melo var. makuwa] >TYK23054.1 protein GrpE-like [Cucumis melo var. makuwa])

HSP 1 Score: 99.0 bits (245), Expect = 1.4e-17
Identity = 50/52 (96.15%), Postives = 51/52 (98.08%), Query Frame = 0


Query: 4  QNFAKRLLDVVDNLGRASSVVKGRKDSSGAIPFLKTLPEVAGMTEKQLMEVF 56
          +NFAK LLDVVDNLGRASSVVKGRKDSSGAIPFLKTLPEVAGMTEKQLMEVF
Sbjct: 34 KNFAKSLLDVVDNLGRASSVVKGRKDSSGAIPFLKTLPEVAGMTEKQLMEVF 85

[Close]

BLAST of Pay0010173 vs. NCBI nr
Match: PON39383.1 (GrpE nucleotide exchange factor [Parasponia andersonii])

HSP 1 Score: 72.8 bits (177), Expect = 1.1e-09
Identity = 41/60 (68.33%), Postives = 44/60 (73.33%), Query Frame = 0


Query: 4   QNFAKRLLDVVDNLGRASSVVK-------GRKDSSGAIPFLKTLPEVAGMTEKQLMEVFK 57
           QNFAK LLDV DNLGRASSVVK         KDS+GA+P LKTL E   MTEKQL+EVFK
Sbjct: 209 QNFAKSLLDVADNLGRASSVVKESFSKIDASKDSAGAVPLLKTLLEGVEMTEKQLIEVFK 268

[Close]

BLAST of Pay0010173 vs. NCBI nr
Match: XP_024924071.1 (grpE protein homolog 2, mitochondrial-like isoform X2 [Ziziphus jujuba])

HSP 1 Score: 72.4 bits (176), Expect = 1.4e-09
Identity = 41/60 (68.33%), Postives = 43/60 (71.67%), Query Frame = 0


Query: 4   QNFAKRLLDVVDNLGRASSVVK-------GRKDSSGAIPFLKTLPEVAGMTEKQLMEVFK 57
           QNFAK LLDV DNLGRASSVVK         KDS+GA+P LKTL E   MTEKQL EVFK
Sbjct: 216 QNFAKNLLDVADNLGRASSVVKESFLKIDASKDSTGAVPLLKTLLEGVEMTEKQLAEVFK 275

[Close]

BLAST of Pay0010173 vs. NCBI nr
Match: XP_015866024.1 (grpE protein homolog 2, mitochondrial-like isoform X1 [Ziziphus jujuba])

HSP 1 Score: 72.4 bits (176), Expect = 1.4e-09
Identity = 41/60 (68.33%), Postives = 43/60 (71.67%), Query Frame = 0


Query: 4   QNFAKRLLDVVDNLGRASSVVK-------GRKDSSGAIPFLKTLPEVAGMTEKQLMEVFK 57
           QNFAK LLDV DNLGRASSVVK         KDS+GA+P LKTL E   MTEKQL EVFK
Sbjct: 221 QNFAKNLLDVADNLGRASSVVKESFLKIDASKDSTGAVPLLKTLLEGVEMTEKQLAEVFK 280

[Close]

BLAST of Pay0010173 vs. NCBI nr
Match: XP_015866025.1 (grpE protein homolog 2, mitochondrial-like isoform X3 [Ziziphus jujuba])

HSP 1 Score: 72.4 bits (176), Expect = 1.4e-09
Identity = 41/60 (68.33%), Postives = 43/60 (71.67%), Query Frame = 0


Query: 4   QNFAKRLLDVVDNLGRASSVVK-------GRKDSSGAIPFLKTLPEVAGMTEKQLMEVFK 57
           QNFAK LLDV DNLGRASSVVK         KDS+GA+P LKTL E   MTEKQL EVFK
Sbjct: 192 QNFAKNLLDVADNLGRASSVVKESFLKIDASKDSTGAVPLLKTLLEGVEMTEKQLAEVFK 251

[Close]

BLAST of Pay0010173 vs. TAIR 10
Match: AT4G26780.1 (Co-chaperone GrpE family protein )

HSP 1 Score: 68.2 bits (165), Expect = 2.4e-12
Identity = 40/60 (66.67%), Postives = 42/60 (70.00%), Query Frame = 0


Query: 4   QNFAKRLLDVVDNLGRASSVVK-------GRKDSSGAIPFLKTLPEVAGMTEKQLMEVFK 57
           QNFAK LLDV DNLGRASSVVK         +DS+GA P LKTL E   MTEKQL EVFK
Sbjct: 196 QNFAKSLLDVADNLGRASSVVKESFSKLDTSEDSAGAAPLLKTLLEGVEMTEKQLAEVFK 255

[Close]

BLAST of Pay0010173 vs. TAIR 10
Match: AT5G55200.1 (Co-chaperone GrpE family protein )

HSP 1 Score: 58.9 bits (141), Expect = 1.5e-09
Identity = 36/60 (60.00%), Postives = 38/60 (63.33%), Query Frame = 0


Query: 4   QNFAKRLLDVVDNLGRASSVVK-------GRKDSSGAIPFLKTLPEVAGMTEKQLMEVFK 57
           QNFA  LLDV DNL RASSVVK         KD +GA P LK L E   MTEKQL EVF+
Sbjct: 171 QNFATSLLDVADNLERASSVVKESFSKIDTSKDLAGATPLLKNLLEGVEMTEKQLAEVFR 230

The following BLAST results are available for this feature:

BLAST of Pay0010173 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q8LB47	3.4e-11	66.67	GrpE protein homolog 2, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=Mge2 PE...	[more]
Q9FLP3	2.1e-08	60.00	GrpE protein homolog 1, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=Mge1 PE...	[more]

BLAST of Pay0010173 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3DHG0	6.7e-18	96.15	Protein GrpE-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold142G00...	[more]
A0A2P5AS62	5.2e-10	68.33	GrpE protein homolog OS=Parasponia andersonii OX=3476 GN=PanWU01x14_305620 PE=3 ...	[more]
A0A6P3YV01	6.7e-10	68.33	grpE protein homolog 2, mitochondrial-like isoform X3 OS=Ziziphus jujuba OX=3269...	[more]
A0A6P3YRN9	6.7e-10	68.33	grpE protein homolog 2, mitochondrial-like isoform X1 OS=Ziziphus jujuba OX=3269...	[more]
A0A6P6FR98	6.7e-10	68.33	grpE protein homolog 2, mitochondrial-like isoform X2 OS=Ziziphus jujuba OX=3269...	[more]

BLAST of Pay0010173 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0049810.1	1.4e-17	96.15	protein GrpE-like [Cucumis melo var. makuwa] >TYK23054.1 protein GrpE-like [Cucu...	[more]
PON39383.1	1.1e-09	68.33	GrpE nucleotide exchange factor [Parasponia andersonii]	[more]
XP_024924071.1	1.4e-09	68.33	grpE protein homolog 2, mitochondrial-like isoform X2 [Ziziphus jujuba]	[more]
XP_015866024.1	1.4e-09	68.33	grpE protein homolog 2, mitochondrial-like isoform X1 [Ziziphus jujuba]	[more]
XP_015866025.1	1.4e-09	68.33	grpE protein homolog 2, mitochondrial-like isoform X3 [Ziziphus jujuba]	[more]

BLAST of Pay0010173 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G26780.1	2.4e-12	66.67	Co-chaperone GrpE family protein	[more]
AT5G55200.1	1.5e-09	60.00	Co-chaperone GrpE family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (Payzawat) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR013805	GrpE nucleotide exchange factor, coiled-coil	GENE3D	3.90.20.20		coord: 1..56 e-value: 8.2E-9 score: 37.3
IPR013805	GrpE nucleotide exchange factor, coiled-coil	SUPERFAMILY	58014	Coiled-coil domain of nucleotide exchange factor GrpE	coord: 4..56
IPR000740	GrpE nucleotide exchange factor	PANTHER	PTHR21237	GRPE PROTEIN	coord: 4..56
None	No IPR available	PANTHER	PTHR21237:SF37	GRPE PROTEIN HOMOLOG	coord: 4..56

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Pay0010173.1	Pay0010173.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006457	protein folding
biological_process	GO:0030150	protein import into mitochondrial matrix
cellular_component	GO:0001405	PAM complex, Tim23 associated import motor
molecular_function	GO:0000774	adenyl-nucleotide exchange factor activity
molecular_function	GO:0051087	chaperone binding
molecular_function	GO:0042803	protein homodimerization activity
molecular_function	GO:0051082	unfolded protein binding