Pay0010061 (gene) Melon (Payzawat) v1

Overview


Name	Pay0010061
Type	gene
Organism	Cucumis melo L. var. inodorus cv. Payzawat (Melon (Payzawat) v1)
Description	Low temperature and salt responsive protein family
Location	chr02: 180775 .. 181050 (+)
RNA-Seq Expression	Pay0010061
Synteny	Pay0010061

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCAGACGAACGAACAACAAATTGCATCGATATCCTCCTCGCTATTCTCCTCCCTCCTCTTGGTGTCTTTCTCAAATTTGGATGCCAAGTCTGATCATCATCTCTTCTTTATTCTTCTCTTAATTTTATTTTTCATTTTCAAATTTCATTATCTCACTAACTCTCTCTTTCAATTACTTCATCATTTCAGGTTGAGTTTTGGATCTGCTTGGTCCTAACTTTCTTTGGTTACATCCCTGGCATTATTTATGCTGTTTATGCCATCACCAAGTGA

mRNA sequence

ATGGCAGACGAACGAACAACAAATTGCATCGATATCCTCCTCGCTATTCTCCTCCCTCCTCTTGGTGTCTTTCTCAAATTTGGATGCCAAGTTGAGTTTTGGATCTGCTTGGTCCTAACTTTCTTTGGTTACATCCCTGGCATTATTTATGCTGTTTATGCCATCACCAAGTGA

Coding sequence (CDS)

ATGGCAGACGAACGAACAACAAATTGCATCGATATCCTCCTCGCTATTCTCCTCCCTCCTCTTGGTGTCTTTCTCAAATTTGGATGCCAAGTTGAGTTTTGGATCTGCTTGGTCCTAACTTTCTTTGGTTACATCCCTGGCATTATTTATGCTGTTTATGCCATCACCAAGTGA

Protein sequence

MADERTTNCIDILLAILLPPLGVFLKFGCQVEFWICLVLTFFGYIPGIIYAVYAITK

Homology

[Close]

BLAST of Pay0010061 vs. ExPASy Swiss-Prot
Match: A2Y075 (Hydrophobic protein LTI6B OS=Oryza sativa subsp. indica OX=39946 GN=LTI6B PE=3 SV=2)

HSP 1 Score: 94.7 bits (234), Expect = 3.5e-19
Identity = 44/52 (84.62%), Postives = 48/52 (92.31%), Query Frame = 0


Query: 6  TTNCIDILLAILLPPLGVFLKFGCQVEFWICLVLTFFGYIPGIIYAVYAITK 58
          T NCIDIL+AI+LPPLGVFLKFGC  EFWICL+LTF GYIPGIIYA+YAITK
Sbjct: 4  TANCIDILIAIILPPLGVFLKFGCGHEFWICLLLTFLGYIPGIIYAIYAITK 55

[Close]

BLAST of Pay0010061 vs. ExPASy Swiss-Prot
Match: Q0DKW8 (Hydrophobic protein LTI6B OS=Oryza sativa subsp. japonica OX=39947 GN=LTI6B PE=2 SV=1)

HSP 1 Score: 94.7 bits (234), Expect = 3.5e-19
Identity = 44/52 (84.62%), Postives = 48/52 (92.31%), Query Frame = 0


Query: 6  TTNCIDILLAILLPPLGVFLKFGCQVEFWICLVLTFFGYIPGIIYAVYAITK 58
          T NCIDIL+AI+LPPLGVFLKFGC  EFWICL+LTF GYIPGIIYA+YAITK
Sbjct: 4  TANCIDILIAIILPPLGVFLKFGCGHEFWICLLLTFLGYIPGIIYAIYAITK 55

[Close]

BLAST of Pay0010061 vs. ExPASy Swiss-Prot
Match: Q8H5T6 (Hydrophobic protein LTI6A OS=Oryza sativa subsp. japonica OX=39947 GN=LTI6A PE=2 SV=1)

HSP 1 Score: 93.6 bits (231), Expect = 7.8e-19
Identity = 44/57 (77.19%), Postives = 50/57 (87.72%), Query Frame = 0


Query: 1  MADERTTNCIDILLAILLPPLGVFLKFGCQVEFWICLVLTFFGYIPGIIYAVYAITK 58
          MAD  T  CIDI+LAI+LPPLGVF KFGC +EFWICL+LTFFGY+PGIIYAV+ ITK
Sbjct: 1  MADS-TATCIDIILAIILPPLGVFFKFGCGIEFWICLLLTFFGYLPGIIYAVWVITK 56

[Close]

BLAST of Pay0010061 vs. ExPASy Swiss-Prot
Match: Q9ZNS6 (Hydrophobic protein RCI2B OS=Arabidopsis thaliana OX=3702 GN=RCI2B PE=2 SV=1)

HSP 1 Score: 86.7 bits (213), Expect = 9.5e-17
Identity = 38/52 (73.08%), Postives = 47/52 (90.38%), Query Frame = 0


Query: 6  TTNCIDILLAILLPPLGVFLKFGCQVEFWICLVLTFFGYIPGIIYAVYAITK 58
          T   ++I+LAI+LPPLGVFLKFGC+VEFWICL+LT FGY+PGI+YA+Y ITK
Sbjct: 3  TATFVEIILAIILPPLGVFLKFGCKVEFWICLILTLFGYLPGILYALYIITK 54

[Close]

BLAST of Pay0010061 vs. ExPASy Swiss-Prot
Match: Q9ZNQ7 (Hydrophobic protein RCI2A OS=Arabidopsis thaliana OX=3702 GN=RCI2A PE=2 SV=1)

HSP 1 Score: 85.9 bits (211), Expect = 1.6e-16
Identity = 39/52 (75.00%), Postives = 45/52 (86.54%), Query Frame = 0


Query: 6  TTNCIDILLAILLPPLGVFLKFGCQVEFWICLVLTFFGYIPGIIYAVYAITK 58
          T   +DI++AILLPPLGVFL+FGC VEFWICLVLT  GYIPGIIYA+Y +TK
Sbjct: 3  TATFVDIIIAILLPPLGVFLRFGCGVEFWICLVLTLLGYIPGIIYAIYVLTK 54

[Close]

BLAST of Pay0010061 vs. ExPASy TrEMBL
Match: A0A1S3BNR9 (hydrophobic protein LTI6B-like OS=Cucumis melo OX=3656 GN=LOC103492093 PE=3 SV=1)

HSP 1 Score: 118.2 bits (295), Expect = 1.1e-23
Identity = 57/57 (100.00%), Postives = 57/57 (100.00%), Query Frame = 0


Query: 1  MADERTTNCIDILLAILLPPLGVFLKFGCQVEFWICLVLTFFGYIPGIIYAVYAITK 58
          MADERTTNCIDILLAILLPPLGVFLKFGCQVEFWICLVLTFFGYIPGIIYAVYAITK
Sbjct: 1  MADERTTNCIDILLAILLPPLGVFLKFGCQVEFWICLVLTFFGYIPGIIYAVYAITK 57

[Close]

BLAST of Pay0010061 vs. ExPASy TrEMBL
Match: A0A0A0M1D6 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G560745 PE=3 SV=1)

HSP 1 Score: 115.5 bits (288), Expect = 7.1e-23
Identity = 56/57 (98.25%), Postives = 56/57 (98.25%), Query Frame = 0


Query: 1  MADERTTNCIDILLAILLPPLGVFLKFGCQVEFWICLVLTFFGYIPGIIYAVYAITK 58
          MADE TTNCIDILLAILLPPLGVFLKFGCQVEFWICLVLTFFGYIPGIIYAVYAITK
Sbjct: 1  MADEGTTNCIDILLAILLPPLGVFLKFGCQVEFWICLVLTFFGYIPGIIYAVYAITK 57

[Close]

BLAST of Pay0010061 vs. ExPASy TrEMBL
Match: A0A4Y7IL50 (Uncharacterized protein OS=Papaver somniferum OX=3469 GN=C5167_017259 PE=3 SV=1)

HSP 1 Score: 111.7 bits (278), Expect = 1.0e-21
Identity = 51/57 (89.47%), Postives = 55/57 (96.49%), Query Frame = 0


Query: 1  MADERTTNCIDILLAILLPPLGVFLKFGCQVEFWICLVLTFFGYIPGIIYAVYAITK 58
          MADE T NCIDILLAI+LPPLGVFLKFGCQ+EFWICL+LTFFGYIPGIIYA+YAITK
Sbjct: 1  MADESTLNCIDILLAIILPPLGVFLKFGCQIEFWICLILTFFGYIPGIIYAIYAITK 57

[Close]

BLAST of Pay0010061 vs. ExPASy TrEMBL
Match: A0A1S2XTZ3 (hydrophobic protein LTI6B-like OS=Cicer arietinum OX=3827 GN=LOC101498830 PE=3 SV=1)

HSP 1 Score: 111.3 bits (277), Expect = 1.3e-21
Identity = 53/57 (92.98%), Postives = 54/57 (94.74%), Query Frame = 0


Query: 1  MADERTTNCIDILLAILLPPLGVFLKFGCQVEFWICLVLTFFGYIPGIIYAVYAITK 58
          MADE T NCIDILLAILLPPLGVFLKFGC VEFWICLVLTFFGYIPGIIYA+YAITK
Sbjct: 1  MADEGTANCIDILLAILLPPLGVFLKFGCHVEFWICLVLTFFGYIPGIIYAIYAITK 57

[Close]

BLAST of Pay0010061 vs. ExPASy TrEMBL
Match: A0A2K3L766 (Hydrophobic protein LTI6A-like OS=Trifolium pratense OX=57577 GN=L195_g030288 PE=3 SV=1)

HSP 1 Score: 108.6 bits (270), Expect = 8.6e-21
Identity = 52/57 (91.23%), Postives = 53/57 (92.98%), Query Frame = 0


Query: 1  MADERTTNCIDILLAILLPPLGVFLKFGCQVEFWICLVLTFFGYIPGIIYAVYAITK 58
          MADE T NCIDILLAI+LPPLGVFLKFGC VEFWICLVLT FGYIPGIIYAVYAITK
Sbjct: 1  MADEGTANCIDILLAIILPPLGVFLKFGCNVEFWICLVLTLFGYIPGIIYAVYAITK 57

[Close]

BLAST of Pay0010061 vs. NCBI nr
Match: XP_008450512.1 (PREDICTED: hydrophobic protein LTI6B-like [Cucumis melo])

HSP 1 Score: 118.2 bits (295), Expect = 2.3e-23
Identity = 57/57 (100.00%), Postives = 57/57 (100.00%), Query Frame = 0


Query: 1  MADERTTNCIDILLAILLPPLGVFLKFGCQVEFWICLVLTFFGYIPGIIYAVYAITK 58
          MADERTTNCIDILLAILLPPLGVFLKFGCQVEFWICLVLTFFGYIPGIIYAVYAITK
Sbjct: 1  MADERTTNCIDILLAILLPPLGVFLKFGCQVEFWICLVLTFFGYIPGIIYAVYAITK 57

[Close]

BLAST of Pay0010061 vs. NCBI nr
Match: XP_038879764.1 (hydrophobic protein LTI6B-like [Benincasa hispida])

HSP 1 Score: 115.9 bits (289), Expect = 1.1e-22
Identity = 56/57 (98.25%), Postives = 56/57 (98.25%), Query Frame = 0


Query: 1  MADERTTNCIDILLAILLPPLGVFLKFGCQVEFWICLVLTFFGYIPGIIYAVYAITK 58
          MADE TTNCIDILLAILLPPLGVFLKFGCQVEFWICLVLTFFGYIPGIIYAVYAITK
Sbjct: 37 MADEATTNCIDILLAILLPPLGVFLKFGCQVEFWICLVLTFFGYIPGIIYAVYAITK 93

[Close]

BLAST of Pay0010061 vs. NCBI nr
Match: KGN65991.1 (hypothetical protein Csa_007015 [Cucumis sativus])

HSP 1 Score: 115.5 bits (288), Expect = 1.5e-22
Identity = 56/57 (98.25%), Postives = 56/57 (98.25%), Query Frame = 0


Query: 1  MADERTTNCIDILLAILLPPLGVFLKFGCQVEFWICLVLTFFGYIPGIIYAVYAITK 58
          MADE TTNCIDILLAILLPPLGVFLKFGCQVEFWICLVLTFFGYIPGIIYAVYAITK
Sbjct: 1  MADEGTTNCIDILLAILLPPLGVFLKFGCQVEFWICLVLTFFGYIPGIIYAVYAITK 57

[Close]

BLAST of Pay0010061 vs. NCBI nr
Match: RZC48826.1 (hypothetical protein C5167_017259 [Papaver somniferum] >RZC88164.1 hypothetical protein C5167_015966 [Papaver somniferum])

HSP 1 Score: 111.7 bits (278), Expect = 2.1e-21
Identity = 51/57 (89.47%), Postives = 55/57 (96.49%), Query Frame = 0


Query: 1  MADERTTNCIDILLAILLPPLGVFLKFGCQVEFWICLVLTFFGYIPGIIYAVYAITK 58
          MADE T NCIDILLAI+LPPLGVFLKFGCQ+EFWICL+LTFFGYIPGIIYA+YAITK
Sbjct: 1  MADESTLNCIDILLAIILPPLGVFLKFGCQIEFWICLILTFFGYIPGIIYAIYAITK 57

[Close]

BLAST of Pay0010061 vs. NCBI nr
Match: XP_004494506.1 (hydrophobic protein LTI6B-like [Cicer arietinum])

HSP 1 Score: 111.3 bits (277), Expect = 2.8e-21
Identity = 53/57 (92.98%), Postives = 54/57 (94.74%), Query Frame = 0


Query: 1  MADERTTNCIDILLAILLPPLGVFLKFGCQVEFWICLVLTFFGYIPGIIYAVYAITK 58
          MADE T NCIDILLAILLPPLGVFLKFGC VEFWICLVLTFFGYIPGIIYA+YAITK
Sbjct: 1  MADEGTANCIDILLAILLPPLGVFLKFGCHVEFWICLVLTFFGYIPGIIYAIYAITK 57

[Close]

BLAST of Pay0010061 vs. TAIR 10
Match: AT3G05890.1 (Low temperature and salt responsive protein family )

HSP 1 Score: 86.7 bits (213), Expect = 6.8e-18
Identity = 38/52 (73.08%), Postives = 47/52 (90.38%), Query Frame = 0


Query: 6  TTNCIDILLAILLPPLGVFLKFGCQVEFWICLVLTFFGYIPGIIYAVYAITK 58
          T   ++I+LAI+LPPLGVFLKFGC+VEFWICL+LT FGY+PGI+YA+Y ITK
Sbjct: 3  TATFVEIILAIILPPLGVFLKFGCKVEFWICLILTLFGYLPGILYALYIITK 54

[Close]

BLAST of Pay0010061 vs. TAIR 10
Match: AT3G05880.1 (Low temperature and salt responsive protein family )

HSP 1 Score: 85.9 bits (211), Expect = 1.2e-17
Identity = 39/52 (75.00%), Postives = 45/52 (86.54%), Query Frame = 0


Query: 6  TTNCIDILLAILLPPLGVFLKFGCQVEFWICLVLTFFGYIPGIIYAVYAITK 58
          T   +DI++AILLPPLGVFL+FGC VEFWICLVLT  GYIPGIIYA+Y +TK
Sbjct: 3  TATFVDIIIAILLPPLGVFLRFGCGVEFWICLVLTLLGYIPGIIYAIYVLTK 54

[Close]

BLAST of Pay0010061 vs. TAIR 10
Match: AT2G38905.1 (Low temperature and salt responsive protein family )

HSP 1 Score: 75.5 bits (184), Expect = 1.6e-14
Identity = 33/46 (71.74%), Postives = 42/46 (91.30%), Query Frame = 0


Query: 10 IDILLAILLPPLGVFLKFGCQVEFWICLVLTFFGYIPGIIYAVYAI 56
          ++I+LAILLPP+GVFL++GC VEFWICL+LT  GYIPGIIYA+Y +
Sbjct: 7  LEIILAILLPPVGVFLRYGCGVEFWICLLLTILGYIPGIIYAIYVL 52

[Close]

BLAST of Pay0010061 vs. TAIR 10
Match: AT1G57550.1 (Low temperature and salt responsive protein family )

HSP 1 Score: 68.2 bits (165), Expect = 2.5e-12
Identity = 27/48 (56.25%), Postives = 41/48 (85.42%), Query Frame = 0


Query: 10 IDILLAILLPPLGVFLKFGCQVEFWICLVLTFFGYIPGIIYAVYAITK 58
          +++L AI +PP+GVFL++G  +EFW+CL+LT F +IPG+IYA+Y +TK
Sbjct: 5  LEVLCAIFIPPVGVFLRYGLGLEFWVCLLLTLFAFIPGLIYAIYVLTK 52

[Close]

BLAST of Pay0010061 vs. TAIR 10
Match: AT4G30650.1 (Low temperature and salt responsive protein family )

HSP 1 Score: 65.5 bits (158), Expect = 1.6e-11
Identity = 38/56 (67.86%), Postives = 41/56 (73.21%), Query Frame = 0


Query: 1  MADERTTNCIDILLAILLPPLGVFLKFG-CQVEFWICLVLTFFGYIPGIIYAVYAI 56
          MA      C +IL+AILLPPLGV LK G C VEF ICLVLT  GYIPGIIYA+Y I
Sbjct: 1  MASNMEVFC-EILIAILLPPLGVCLKRGCCTVEFLICLVLTILGYIPGIIYALYVI 55

The following BLAST results are available for this feature:

BLAST of Pay0010061 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
A2Y075	3.5e-19	84.62	Hydrophobic protein LTI6B OS=Oryza sativa subsp. indica OX=39946 GN=LTI6B PE=3 S...	[more]
Q0DKW8	3.5e-19	84.62	Hydrophobic protein LTI6B OS=Oryza sativa subsp. japonica OX=39947 GN=LTI6B PE=2...	[more]
Q8H5T6	7.8e-19	77.19	Hydrophobic protein LTI6A OS=Oryza sativa subsp. japonica OX=39947 GN=LTI6A PE=2...	[more]
Q9ZNS6	9.5e-17	73.08	Hydrophobic protein RCI2B OS=Arabidopsis thaliana OX=3702 GN=RCI2B PE=2 SV=1	[more]
Q9ZNQ7	1.6e-16	75.00	Hydrophobic protein RCI2A OS=Arabidopsis thaliana OX=3702 GN=RCI2A PE=2 SV=1	[more]

BLAST of Pay0010061 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S3BNR9	1.1e-23	100.00	hydrophobic protein LTI6B-like OS=Cucumis melo OX=3656 GN=LOC103492093 PE=3 SV=1	[more]
A0A0A0M1D6	7.1e-23	98.25	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G560745 PE=3 SV=1	[more]
A0A4Y7IL50	1.0e-21	89.47	Uncharacterized protein OS=Papaver somniferum OX=3469 GN=C5167_017259 PE=3 SV=1	[more]
A0A1S2XTZ3	1.3e-21	92.98	hydrophobic protein LTI6B-like OS=Cicer arietinum OX=3827 GN=LOC101498830 PE=3 S...	[more]
A0A2K3L766	8.6e-21	91.23	Hydrophobic protein LTI6A-like OS=Trifolium pratense OX=57577 GN=L195_g030288 PE...	[more]

BLAST of Pay0010061 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008450512.1	2.3e-23	100.00	PREDICTED: hydrophobic protein LTI6B-like [Cucumis melo]	[more]
XP_038879764.1	1.1e-22	98.25	hydrophobic protein LTI6B-like [Benincasa hispida]	[more]
KGN65991.1	1.5e-22	98.25	hypothetical protein Csa_007015 [Cucumis sativus]	[more]
RZC48826.1	2.1e-21	89.47	hypothetical protein C5167_017259 [Papaver somniferum] >RZC88164.1 hypothetical ...	[more]
XP_004494506.1	2.8e-21	92.98	hydrophobic protein LTI6B-like [Cicer arietinum]	[more]

BLAST of Pay0010061 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G05890.1	6.8e-18	73.08	Low temperature and salt responsive protein family	[more]
AT3G05880.1	1.2e-17	75.00	Low temperature and salt responsive protein family	[more]
AT2G38905.1	1.6e-14	71.74	Low temperature and salt responsive protein family	[more]
AT1G57550.1	2.5e-12	56.25	Low temperature and salt responsive protein family	[more]
AT4G30650.1	1.6e-11	67.86	Low temperature and salt responsive protein family	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (Payzawat) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000612	Proteolipid membrane potential modulator	PFAM	PF01679	Pmp3	coord: 9..55 e-value: 3.7E-20 score: 71.9
IPR000612	Proteolipid membrane potential modulator	PANTHER	PTHR21659	HYDROPHOBIC PROTEIN RCI2 LOW TEMPERATURE AND SALT RESPONSIVE PROTEIN LTI6 -RELATED	coord: 1..57
IPR000612	Proteolipid membrane potential modulator	PROSITE	PS01309	UPF0057	coord: 13..28
None	No IPR available	PANTHER	PTHR21659:SF81	LOW TEMPERATURE AND SALT RESPONSIVE PROTEIN	coord: 1..57

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Pay0010061.1	Pay0010061.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane