Pay0009999 (gene) Melon (Payzawat) v1

Overview


Name	Pay0009999
Type	gene
Organism	Cucumis melo L. var. inodorus cv. Payzawat (Melon (Payzawat) v1)
Description	Reverse transcriptase
Location	chr11: 15814595 .. 15815042 (-)
RNA-Seq Expression	Pay0009999
Synteny	Pay0009999

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCTTCTTATGTGAAATTCTTAAAGGATATATTGGCAAATAAAAGAAGGTTGAATGATTTTAAAAAGTGGCTCTAACGTAGGCAATAAGCGACATCTTCAAAAATGGGGTACCCGAGAAGATGAAAAACCCTAGAATCTTCACATTGCCTTGCTCAATAGGCAGGATGGATTTTAGTGATGCCTTATGCAACTTAAGAGCGAATATCAACTTGATGCATCGTTCTATCTTCAAGAAATTAGAGATAGGGAGGTTCAGCCTATATAAATGAGACTTCAATTTGCTGGTAGATCCATCACCAAGCCTTAAGGCAAAATTGAAGACATTTTGGTCAAGGTGGACAAATTTCTATTCTTAGCAGACTTCGTCATTTCCGATTACGAAACTGATAAGAGGTGTCTATCATTTTGGGGTGGCCATTTCTGTCAACTGGTCGTGCCTTCATAG

mRNA sequence

ATGTCTTCTTATGTGAAATTCTTAAAGGATATATTGGCAAATAAAAGAAGCGACATCTTCAAAAATGGGGTACCCGAGAAGATGAAAAACCCTAGAATCTTCACATTGCCTTGCTCAATAGGCAGGATGGATTTTAGTGATGCCTTATGCAACTTAAGAGCGAATATCAACTTGATGCATCGCAAAATTGAAGACATTTTGGTCAAGGTGGACAAATTTCTATTCTTAGCAGACTTCGTCATTTCCGATTACGAAACTGATAAGAGGTGTCTATCATTTTGGGGTGGCCATTTCTGTCAACTGGTCGTGCCTTCATAG

Coding sequence (CDS)

ATGTCTTCTTATGTGAAATTCTTAAAGGATATATTGGCAAATAAAAGAAGCGACATCTTCAAAAATGGGGTACCCGAGAAGATGAAAAACCCTAGAATCTTCACATTGCCTTGCTCAATAGGCAGGATGGATTTTAGTGATGCCTTATGCAACTTAAGAGCGAATATCAACTTGATGCATCGCAAAATTGAAGACATTTTGGTCAAGGTGGACAAATTTCTATTCTTAGCAGACTTCGTCATTTCCGATTACGAAACTGATAAGAGGTGTCTATCATTTTGGGGTGGCCATTTCTGTCAACTGGTCGTGCCTTCATAG

Protein sequence

MSSYVKFLKDILANKRSDIFKNGVPEKMKNPRIFTLPCSIGRMDFSDALCNLRANINLMHRKIEDILVKVDKFLFLADFVISDYETDKRCLSFWGGHFCQLVVPS

Homology

[Close]

BLAST of Pay0009999 vs. ExPASy TrEMBL
Match: A0A5D3DPZ2 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold862G00150 PE=4 SV=1)

HSP 1 Score: 105.5 bits (262), Expect = 1.3e-19
Identity = 61/114 (53.51%), Postives = 71/114 (62.28%), Query Frame = 0


Query: 1   MSSYVKFLKDILANKR--------------SDIFKNGVPEKMKNPRIFTLPCSIGRMDFS 60
           MSSY+KFLKDILA KR              +D FKNGVPEKM +PR FT+  S G MD  
Sbjct: 1   MSSYIKFLKDILAKKRKINDFETVALTQATNDDFKNGVPEKMTDPRSFTVSYSKGGMDLG 60

Query: 61  DALCNLRANINLM-----------HRKIEDILVKVDKFLFLADFVISDYETDKR 90
            ALC+L A+INLM             KIED+LVKVDKFLF  DFVI DY+ D++
Sbjct: 61  CALCDLGASINLMPLSIFKKVGIGEGKIEDVLVKVDKFLFSEDFVILDYKADRK 114

[Close]

BLAST of Pay0009999 vs. ExPASy TrEMBL
Match: A0A5D3BDT2 (RT_RNaseH domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold487G00330 PE=4 SV=1)

HSP 1 Score: 95.5 bits (236), Expect = 1.4e-16
Identity = 60/135 (44.44%), Postives = 67/135 (49.63%), Query Frame = 0


Query: 1   MSSYVKFLKDILANKR--------------SDIFKNGVPEKMKNPRIFTLPCSIGRMDFS 60
           M SY KFL DILA KR              SDI+KNGV EKM  P  F +PCSI  MD  
Sbjct: 1   MPSYAKFLTDILAKKRRINDFQTMALRQATSDIYKNGVLEKMTYPGSFKVPCSIDGMDLG 60

Query: 61  DALCNLRANINLM------------------------------HRKIEDILVKVDKFLFL 92
             LC+L A+INLM                                KIED+LVKVDKFLF 
Sbjct: 61  HVLCDLGASINLMPLSIFKKLKIKEVQPTHMRFQLADRSITNPKGKIEDVLVKVDKFLFF 120

[Close]

BLAST of Pay0009999 vs. ExPASy TrEMBL
Match: A0A5D3BKH1 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold562G00080 PE=4 SV=1)

HSP 1 Score: 95.5 bits (236), Expect = 1.4e-16
Identity = 60/137 (43.80%), Postives = 71/137 (51.82%), Query Frame = 0


Query: 1   MSSYVKFLKDILANKR--------------SDIFKNGVPEKMKNPRIFTLPCSIGRMDFS 60
           M SY+KFLK ILA KR              SD+FKNGVP+KM +   F + CSIG MD  
Sbjct: 1   MPSYIKFLKGILAKKRKINDFETVALTQTTSDVFKNGVPKKMTDLGSFIVSCSIGGMDLG 60

Query: 61  DALCNLRANINLMH------------------------------RKIEDILVKVDKFLFL 94
            AL  L A+INLM+                               KIED+LVKVDKFLF 
Sbjct: 61  RALYKLGASINLMYLFIFKKLRIEEVQSSHMRLSFADRSFAKLEEKIEDVLVKVDKFLFS 120

[Close]

BLAST of Pay0009999 vs. ExPASy TrEMBL
Match: A0A1S3BHX3 (uncharacterized protein LOC103490055 OS=Cucumis melo OX=3656 GN=LOC103490055 PE=4 SV=1)

HSP 1 Score: 95.5 bits (236), Expect = 1.4e-16
Identity = 60/135 (44.44%), Postives = 67/135 (49.63%), Query Frame = 0


Query: 1   MSSYVKFLKDILANKR--------------SDIFKNGVPEKMKNPRIFTLPCSIGRMDFS 60
           M SY KFL DILA KR              SDI+KNGV EKM  P  F +PCSI  MD  
Sbjct: 1   MPSYAKFLTDILAKKRRINDFQTMALRQATSDIYKNGVLEKMTYPGSFKVPCSIDGMDLG 60

Query: 61  DALCNLRANINLM------------------------------HRKIEDILVKVDKFLFL 92
             LC+L A+INLM                                KIED+LVKVDKFLF 
Sbjct: 61  HVLCDLGASINLMPLSIFKKLKIKEVQPTHMRFQLADRSITNPKGKIEDVLVKVDKFLFF 120

[Close]

BLAST of Pay0009999 vs. ExPASy TrEMBL
Match: A0A1S3C108 (uncharacterized protein LOC103495785 OS=Cucumis melo OX=3656 GN=LOC103495785 PE=4 SV=1)

HSP 1 Score: 94.4 bits (233), Expect = 3.1e-16
Identity = 59/133 (44.36%), Postives = 69/133 (51.88%), Query Frame = 0


Query: 1   MSSYVKFLKDILANKR--------------SDIFKNGVPEKMKNPRIFTLPCSIGRMDFS 60
           M SY+KFLK ILA KR              SD+FKNGVP+KM +   F + CSIG MD  
Sbjct: 1   MPSYIKFLKGILAKKRKINDFETVALTQTTSDVFKNGVPKKMTDLGSFIVSCSIGGMDLG 60

Query: 61  DALCNLRANINLMH------------------------------RKIEDILVKVDKFLFL 90
            AL  L A+INLM+                               KIED+LVKVDKFLF 
Sbjct: 61  RALYKLGASINLMYLFIFKKLRIEEVQSSHMRLSFADRSFAKLEEKIEDVLVKVDKFLFS 120

[Close]

BLAST of Pay0009999 vs. NCBI nr
Match: KAA0035429.1 (uncharacterized protein E6C27_scaffold285G00480 [Cucumis melo var. makuwa] >TYK25723.1 uncharacterized protein E5676_scaffold862G00150 [Cucumis melo var. makuwa])

HSP 1 Score: 105.5 bits (262), Expect = 2.8e-19
Identity = 61/114 (53.51%), Postives = 71/114 (62.28%), Query Frame = 0


Query: 1   MSSYVKFLKDILANKR--------------SDIFKNGVPEKMKNPRIFTLPCSIGRMDFS 60
           MSSY+KFLKDILA KR              +D FKNGVPEKM +PR FT+  S G MD  
Sbjct: 1   MSSYIKFLKDILAKKRKINDFETVALTQATNDDFKNGVPEKMTDPRSFTVSYSKGGMDLG 60

Query: 61  DALCNLRANINLM-----------HRKIEDILVKVDKFLFLADFVISDYETDKR 90
            ALC+L A+INLM             KIED+LVKVDKFLF  DFVI DY+ D++
Sbjct: 61  CALCDLGASINLMPLSIFKKVGIGEGKIEDVLVKVDKFLFSEDFVILDYKADRK 114

[Close]

BLAST of Pay0009999 vs. NCBI nr
Match: XP_038877468.1 (uncharacterized protein LOC120069749 [Benincasa hispida])

HSP 1 Score: 102.4 bits (254), Expect = 2.4e-18
Identity = 60/131 (45.80%), Postives = 73/131 (55.73%), Query Frame = 0


Query: 1   MSSYVKFLKDILANKR--------------SDIFKNGVPEKMKNPRIFTLPCSIGRMDFS 60
           MSSYVKFL DILANKR              S +F+N +P KMK+P+ FTLPCSIGR +  
Sbjct: 1   MSSYVKFLNDILANKRKIGENEMVALTYECSVLFQNNIPTKMKDPKSFTLPCSIGRKEVG 60

Query: 61  DALCNLRANINLM------------------------------HRKIEDILVKVDKFLFL 88
           +ALC+L A+INLM                                KIED+LV+VDKF+F 
Sbjct: 61  NALCDLGASINLMPLSIFKKLNIYNTRPTTIMLQLADRSITHPEVKIEDVLVQVDKFIFP 120

[Close]

BLAST of Pay0009999 vs. NCBI nr
Match: XP_038896265.1 (uncharacterized protein LOC120084542 [Benincasa hispida])

HSP 1 Score: 100.1 bits (248), Expect = 1.2e-17
Identity = 58/132 (43.94%), Postives = 71/132 (53.79%), Query Frame = 0


Query: 1   MSSYVKFLKDILANKR--------------SDIFKNGVPEKMKNPRIFTLPCSIGRMDFS 60
           MSSYVKFLKDILANKR              S +F+N +P KMK+PR FTLPCSIGR    
Sbjct: 1   MSSYVKFLKDILANKRKIGENETVALTYECSALFQNNIPTKMKDPRSFTLPCSIGRKKVG 60

Query: 61  DALCNLRANINLM------------------------------HRKIEDILVKVDKFLFL 89
           + LC+LRA+ NLM                                KIED+LV+VD F+F 
Sbjct: 61  NVLCDLRASTNLMLLSIFKKLNIGNAKPTTITLQLPDRSITNPEGKIEDVLVQVDNFIFP 120

[Close]

BLAST of Pay0009999 vs. NCBI nr
Match: XP_038874947.1 (uncharacterized protein LOC120067460 [Benincasa hispida])

HSP 1 Score: 100.1 bits (248), Expect = 1.2e-17
Identity = 59/131 (45.04%), Postives = 72/131 (54.96%), Query Frame = 0


Query: 1   MSSYVKFLKDILANKR--------------SDIFKNGVPEKMKNPRIFTLPCSIGRMDFS 60
           M SYVKFLKDILANKR              S +F+N +P+KMK+P  FTLPCSIG  +  
Sbjct: 1   MPSYVKFLKDILANKRKIGENETIALTYECSALFQNNIPKKMKDPGSFTLPCSIGGKEVG 60

Query: 61  DALCNLRANINLM------------------------------HRKIEDILVKVDKFLFL 88
           +ALC+L A+INLM                                K+EDILV+VDKF+F 
Sbjct: 61  NALCDLEASINLMPLSIFKKLNIGNARPTTVTLQLADRSITHLEGKLEDILVQVDKFIFP 120

[Close]

BLAST of Pay0009999 vs. NCBI nr
Match: XP_038891629.1 (uncharacterized protein LOC120081020 [Benincasa hispida])

HSP 1 Score: 99.4 bits (246), Expect = 2.0e-17
Identity = 58/131 (44.27%), Postives = 71/131 (54.20%), Query Frame = 0


Query: 1   MSSYVKFLKDILANKR--------------SDIFKNGVPEKMKNPRIFTLPCSIGRMDFS 60
           M SYVKFLKDIL NKR              + +F+N +P KMK+PR FTLPCSIG  +  
Sbjct: 117 MPSYVKFLKDILTNKRKIEENEMAALTYECTALFQNNIPTKMKDPRSFTLPCSIGGKEVR 176

Query: 61  DALCNLRANINLM------------------------------HRKIEDILVKVDKFLFL 88
           +ALC+L A+INLM                                KIED+LV+VDKF+F 
Sbjct: 177 NALCDLEASINLMSLSIVKKLNIGNARPTTVTLQLADRPITLPEGKIEDVLVQVDKFIFP 236

The following BLAST results are available for this feature:

BLAST of Pay0009999 vs.


Match Name	E-value	Identity	Description

BLAST of Pay0009999 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3DPZ2	1.3e-19	53.51	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5D3BDT2	1.4e-16	44.44	RT_RNaseH domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5...	[more]
A0A5D3BKH1	1.4e-16	43.80	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A1S3BHX3	1.4e-16	44.44	uncharacterized protein LOC103490055 OS=Cucumis melo OX=3656 GN=LOC103490055 PE=...	[more]
A0A1S3C108	3.1e-16	44.36	uncharacterized protein LOC103495785 OS=Cucumis melo OX=3656 GN=LOC103495785 PE=...	[more]

BLAST of Pay0009999 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0035429.1	2.8e-19	53.51	uncharacterized protein E6C27_scaffold285G00480 [Cucumis melo var. makuwa] >TYK2...	[more]
XP_038877468.1	2.4e-18	45.80	uncharacterized protein LOC120069749 [Benincasa hispida]	[more]
XP_038896265.1	1.2e-17	43.94	uncharacterized protein LOC120084542 [Benincasa hispida]	[more]
XP_038874947.1	1.2e-17	45.04	uncharacterized protein LOC120067460 [Benincasa hispida]	[more]
XP_038891629.1	2.0e-17	44.27	uncharacterized protein LOC120081020 [Benincasa hispida]	[more]

BLAST of Pay0009999 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (Payzawat) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR33067	FAMILY NOT NAMED	coord: 63..89
None	No IPR available	PANTHER	PTHR33067	FAMILY NOT NAMED	coord: 4..61
None	No IPR available	PANTHER	PTHR33067:SF26	SUBFAMILY NOT NAMED	coord: 4..61
None	No IPR available	PANTHER	PTHR33067:SF26	SUBFAMILY NOT NAMED	coord: 63..89

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Pay0009999.1	Pay0009999.1	mRNA