Pay0009966 (gene) Melon (Payzawat) v1

Overview


Name	Pay0009966
Type	gene
Organism	Cucumis melo L. var. inodorus cv. Payzawat (Melon (Payzawat) v1)
Description	Calcium-binding EF-hand family protein
Location	chr01: 3678485 .. 3678898 (+)
RNA-Seq Expression	Pay0009966
Synteny	Pay0009966

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexonpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGCGTAGAATTACTTGACGGCGCCACCATAGTCAACTTCGTGGAAGACGAAGAAGCTTTCAATGGTTGGACTAGAGAGCATTTCACCCGTCTTGACACTGACCGCGACGGCTTCCTCACCTACGCCGAGATGCTGAAGGAGTTTTATACTTTGAGAGTCTCCGAAGCTGACTTTGGAACCGATGTGAAACTTGATGCCGATGAGCTCTCTCAACTCTACGGCGCCGTCTTCAAGCAGTTCGATCGGGATTCAGATGGAAAAGTTGATGTCGATGAGTTCATGATGGGGATGAAGAATATGATGTTGGCTATTGCTGAGGGAATGGGATTCTTGCCTATTCAAATGGCTTTGGAAAAAGATGGGTTCTTGATGAAAGCTGTTCAAAGAGAAGCCACCAAAGCCTTTTCTTGA

mRNA sequence

ATGAGCGTAGAATTACTTGACGGCGCCACCATAGTCAACTTCGTGGAAGACGAAGAAGCTTTCAATGGTTGGACTAGAGAGCATTTCACCCGTCTTGACACTGACCGCGACGGCTTCCTCACCTACGCCGAGATGCTGAAGGAGTTTTATACTTTGAGAGTCTCCGAAGCTGACTTTGGAACCGATGTGAAACTTGATGCCGATGAGCTCTCTCAACTCTACGGCGCCGTCTTCAAGCAGTTCGATCGGGATTCAGATGGAAAAGTTGATGTCGATGAGTTCATGATGGGGATGAAGAATATGATGTTGGCTATTGCTGAGGGAATGGGATTCTTGCCTATTCAAATGGCTTTGGAAAAAGATGGGTTCTTGATGAAAGCTGTTCAAAGAGAAGCCACCAAAGCCTTTTCTTGA

Coding sequence (CDS)

ATGAGCGTAGAATTACTTGACGGCGCCACCATAGTCAACTTCGTGGAAGACGAAGAAGCTTTCAATGGTTGGACTAGAGAGCATTTCACCCGTCTTGACACTGACCGCGACGGCTTCCTCACCTACGCCGAGATGCTGAAGGAGTTTTATACTTTGAGAGTCTCCGAAGCTGACTTTGGAACCGATGTGAAACTTGATGCCGATGAGCTCTCTCAACTCTACGGCGCCGTCTTCAAGCAGTTCGATCGGGATTCAGATGGAAAAGTTGATGTCGATGAGTTCATGATGGGGATGAAGAATATGATGTTGGCTATTGCTGAGGGAATGGGATTCTTGCCTATTCAAATGGCTTTGGAAAAAGATGGGTTCTTGATGAAAGCTGTTCAAAGAGAAGCCACCAAAGCCTTTTCTTGA

Protein sequence

MSVELLDGATIVNFVEDEEAFNGWTREHFTRLDTDRDGFLTYAEMLKEFYTLRVSEADFGTDVKLDADELSQLYGAVFKQFDRDSDGKVDVDEFMMGMKNMMLAIAEGMGFLPIQMALEKDGFLMKAVQREATKAFS

Homology

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BLAST of Pay0009966 vs. ExPASy TrEMBL
Match: A0A5A7UY59 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold150G00080 PE=4 SV=1)

HSP 1 Score: 272.3 bits (695), Expect = 1.1e-69
Identity = 136/137 (99.27%), Postives = 137/137 (100.00%), Query Frame = 0


Query: 1   MSVELLDGATIVNFVEDEEAFNGWTREHFTRLDTDRDGFLTYAEMLKEFYTLRVSEADFG 60
           MSVELLDGATIVNFVEDEEAFNGWTREHFTRLDTDRDGFL+YAEMLKEFYTLRVSEADFG
Sbjct: 1   MSVELLDGATIVNFVEDEEAFNGWTREHFTRLDTDRDGFLSYAEMLKEFYTLRVSEADFG 60

Query: 61  TDVKLDADELSQLYGAVFKQFDRDSDGKVDVDEFMMGMKNMMLAIAEGMGFLPIQMALEK 120
           TDVKLDADELSQLYGAVFKQFDRDSDGKVDVDEFMMGMKNMMLAIAEGMGFLPIQMALEK
Sbjct: 61  TDVKLDADELSQLYGAVFKQFDRDSDGKVDVDEFMMGMKNMMLAIAEGMGFLPIQMALEK 120

Query: 121 DGFLMKAVQREATKAFS 138
           DGFLMKAVQREATKAFS
Sbjct: 121 DGFLMKAVQREATKAFS 137

[Close]

BLAST of Pay0009966 vs. ExPASy TrEMBL
Match: A0A1S3C0M6 (uncharacterized protein LOC103495656 OS=Cucumis melo OX=3656 GN=LOC103495656 PE=4 SV=1)

HSP 1 Score: 272.3 bits (695), Expect = 1.1e-69
Identity = 136/137 (99.27%), Postives = 137/137 (100.00%), Query Frame = 0


Query: 1   MSVELLDGATIVNFVEDEEAFNGWTREHFTRLDTDRDGFLTYAEMLKEFYTLRVSEADFG 60
           MSVELLDGATIVNFVEDEEAFNGWTREHFTRLDTDRDGFL+YAEMLKEFYTLRVSEADFG
Sbjct: 1   MSVELLDGATIVNFVEDEEAFNGWTREHFTRLDTDRDGFLSYAEMLKEFYTLRVSEADFG 60

Query: 61  TDVKLDADELSQLYGAVFKQFDRDSDGKVDVDEFMMGMKNMMLAIAEGMGFLPIQMALEK 120
           TDVKLDADELSQLYGAVFKQFDRDSDGKVDVDEFMMGMKNMMLAIAEGMGFLPIQMALEK
Sbjct: 61  TDVKLDADELSQLYGAVFKQFDRDSDGKVDVDEFMMGMKNMMLAIAEGMGFLPIQMALEK 120

Query: 121 DGFLMKAVQREATKAFS 138
           DGFLMKAVQREATKAFS
Sbjct: 121 DGFLMKAVQREATKAFS 137

[Close]

BLAST of Pay0009966 vs. ExPASy TrEMBL
Match: A0A6J1C2T1 (uncharacterized protein LOC111007741 OS=Momordica charantia OX=3673 GN=LOC111007741 PE=4 SV=1)

HSP 1 Score: 190.3 bits (482), Expect = 5.4e-45
Identity = 92/134 (68.66%), Postives = 111/134 (82.84%), Query Frame = 0


Query: 1   MSVELLDGATIVNFVEDEEAFNGWTREHFTRLDTDRDGFLTYAEMLKEFYTLRVSEADFG 60
           MSVE+LD ATI+NFVEDEEAF  W RE F  LD DRDG L+YAEML+E ++LRV E  FG
Sbjct: 1   MSVEILDSATIINFVEDEEAFGAWIRERFRHLDADRDGVLSYAEMLQELHSLRVYETHFG 60

Query: 61  TDVKLDADELSQLYGAVFKQFDRDSDGKVDVDEFMMGMKNMMLAIAEGMGFLPIQMALEK 120
            D K D DELS+LYGAVF QFDR+S+G+VD++EFM G K +M+AIAEGMGFLP+QMALE+
Sbjct: 61  VDAKPDPDELSRLYGAVFMQFDRNSNGEVDLEEFMAGTKRIMVAIAEGMGFLPLQMALEE 120

Query: 121 DGFLMKAVQREATK 135
           DGFLMKAV+ E ++
Sbjct: 121 DGFLMKAVRSEKSR 134

[Close]

BLAST of Pay0009966 vs. ExPASy TrEMBL
Match: F6HIA0 (Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VIT_12s0059g00370 PE=4 SV=1)

HSP 1 Score: 174.9 bits (442), Expect = 2.4e-40
Identity = 86/134 (64.18%), Postives = 106/134 (79.10%), Query Frame = 0


Query: 1   MSVELLDGATIVNFVEDEEAFNGWTREHFTRLDTDRDGFLTYAEMLKEFYTLRVSEADFG 60
           MSVE+LDGATIV+FVEDEEAFNG   + F+ LDT+ DGFL+YAEMLKEF +LRV E  FG
Sbjct: 1   MSVEVLDGATIVSFVEDEEAFNGLIHDRFSNLDTNHDGFLSYAEMLKEFQSLRVFETHFG 60

Query: 61  TDVKLDADELSQLYGAVFKQFDRDSDGKVDVDEFMMGMKNMMLAIAEGMGFLPIQMALEK 120
            DVK D DEL+ +Y ++F +FD D++G VD++EF    K MMLA+A G+GFLP+QM LE+
Sbjct: 61  IDVKRDPDELAHVYDSLFVKFDHDANGAVDLEEFRKETKQMMLAMANGLGFLPVQMVLEE 120

Query: 121 DGFLMKAVQREATK 135
           D FL KAVQREA K
Sbjct: 121 DSFLKKAVQREAIK 134

[Close]

BLAST of Pay0009966 vs. ExPASy TrEMBL
Match: A0A5J5A3Z9 (Uncharacterized protein OS=Nyssa sinensis OX=561372 GN=F0562_011209 PE=4 SV=1)

HSP 1 Score: 174.1 bits (440), Expect = 4.0e-40
Identity = 85/137 (62.04%), Postives = 107/137 (78.10%), Query Frame = 0


Query: 1   MSVELLDGATIVNFVEDEEAFNGWTREHFTRLDTDRDGFLTYAEMLKEFYTLRVSEADFG 60
           MSVE+LD  TIV+FVEDEEAFNG   + F RLDTDRDGFL+YAE+LKE  +LRV E  FG
Sbjct: 12  MSVEVLDSTTIVSFVEDEEAFNGSIHDRFARLDTDRDGFLSYAELLKELQSLRVFETHFG 71

Query: 61  TDVKLDADELSQLYGAVFKQFDRDSDGKVDVDEFMMGMKNMMLAIAEGMGFLPIQMALEK 120
            DVK + DEL+++YG++F QFD DS+G VD++EF    K MMLA+A G+G LP+QMALE+
Sbjct: 72  IDVKTEPDELARVYGSLFVQFDHDSNGAVDLEEFKAETKQMMLAMANGLGCLPVQMALEE 131

Query: 121 DGFLMKAVQREATKAFS 138
           D FL KAV+RE+ K  +
Sbjct: 132 DSFLKKAVERESAKVLA 148

[Close]

BLAST of Pay0009966 vs. NCBI nr
Match: XP_008455505.1 (PREDICTED: uncharacterized protein LOC103495656 [Cucumis melo] >KAA0059136.1 uncharacterized protein E6C27_scaffold430G00460 [Cucumis melo var. makuwa] >TYK21611.1 uncharacterized protein E5676_scaffold150G00080 [Cucumis melo var. makuwa])

HSP 1 Score: 272.3 bits (695), Expect = 2.2e-69
Identity = 136/137 (99.27%), Postives = 137/137 (100.00%), Query Frame = 0


Query: 1   MSVELLDGATIVNFVEDEEAFNGWTREHFTRLDTDRDGFLTYAEMLKEFYTLRVSEADFG 60
           MSVELLDGATIVNFVEDEEAFNGWTREHFTRLDTDRDGFL+YAEMLKEFYTLRVSEADFG
Sbjct: 1   MSVELLDGATIVNFVEDEEAFNGWTREHFTRLDTDRDGFLSYAEMLKEFYTLRVSEADFG 60

Query: 61  TDVKLDADELSQLYGAVFKQFDRDSDGKVDVDEFMMGMKNMMLAIAEGMGFLPIQMALEK 120
           TDVKLDADELSQLYGAVFKQFDRDSDGKVDVDEFMMGMKNMMLAIAEGMGFLPIQMALEK
Sbjct: 61  TDVKLDADELSQLYGAVFKQFDRDSDGKVDVDEFMMGMKNMMLAIAEGMGFLPIQMALEK 120

Query: 121 DGFLMKAVQREATKAFS 138
           DGFLMKAVQREATKAFS
Sbjct: 121 DGFLMKAVQREATKAFS 137

[Close]

BLAST of Pay0009966 vs. NCBI nr
Match: XP_004144609.1 (uncharacterized protein LOC101208968 [Cucumis sativus] >KAE8645726.1 hypothetical protein Csa_020280 [Cucumis sativus])

HSP 1 Score: 261.2 bits (666), Expect = 5.2e-66
Identity = 131/137 (95.62%), Postives = 133/137 (97.08%), Query Frame = 0


Query: 1   MSVELLDGATIVNFVEDEEAFNGWTREHFTRLDTDRDGFLTYAEMLKEFYTLRVSEADFG 60
           MSVELLDGATIVNFVEDEEAFNGWTREHFTRLDTDRDGFL+YAEMLKE + LRVSEADFG
Sbjct: 1   MSVELLDGATIVNFVEDEEAFNGWTREHFTRLDTDRDGFLSYAEMLKELHALRVSEADFG 60

Query: 61  TDVKLDADELSQLYGAVFKQFDRDSDGKVDVDEFMMGMKNMMLAIAEGMGFLPIQMALEK 120
           TDVK DADELSQLY AVFKQFDRDSDGKVDVDEFMMGMKNMMLAIAEGMGFLPIQMALEK
Sbjct: 61  TDVKPDADELSQLYSAVFKQFDRDSDGKVDVDEFMMGMKNMMLAIAEGMGFLPIQMALEK 120

Query: 121 DGFLMKAVQREATKAFS 138
           DGFLMKAVQREATKAFS
Sbjct: 121 DGFLMKAVQREATKAFS 137

[Close]

BLAST of Pay0009966 vs. NCBI nr
Match: XP_038887184.1 (uncharacterized protein LOC120077371 [Benincasa hispida])

HSP 1 Score: 250.0 bits (637), Expect = 1.2e-62
Identity = 125/137 (91.24%), Postives = 131/137 (95.62%), Query Frame = 0


Query: 1   MSVELLDGATIVNFVEDEEAFNGWTREHFTRLDTDRDGFLTYAEMLKEFYTLRVSEADFG 60
           MSVELLDGATIVNFVEDEEAFNGWTREHF  LDTD DGFL+YAEMLKE ++LRVSEADFG
Sbjct: 1   MSVELLDGATIVNFVEDEEAFNGWTREHFNHLDTDGDGFLSYAEMLKELHSLRVSEADFG 60

Query: 61  TDVKLDADELSQLYGAVFKQFDRDSDGKVDVDEFMMGMKNMMLAIAEGMGFLPIQMALEK 120
           TDVK DAD+LS+LYGAVF QFDRDS+GKVDVDEFMMGMKNMMLAIAEGMGFLPIQMALEK
Sbjct: 61  TDVKPDADDLSRLYGAVFGQFDRDSNGKVDVDEFMMGMKNMMLAIAEGMGFLPIQMALEK 120

Query: 121 DGFLMKAVQREATKAFS 138
           DGFLMKAVQREATKAFS
Sbjct: 121 DGFLMKAVQREATKAFS 137

[Close]

BLAST of Pay0009966 vs. NCBI nr
Match: XP_022135904.1 (uncharacterized protein LOC111007741 [Momordica charantia])

HSP 1 Score: 190.3 bits (482), Expect = 1.1e-44
Identity = 92/134 (68.66%), Postives = 111/134 (82.84%), Query Frame = 0


Query: 1   MSVELLDGATIVNFVEDEEAFNGWTREHFTRLDTDRDGFLTYAEMLKEFYTLRVSEADFG 60
           MSVE+LD ATI+NFVEDEEAF  W RE F  LD DRDG L+YAEML+E ++LRV E  FG
Sbjct: 1   MSVEILDSATIINFVEDEEAFGAWIRERFRHLDADRDGVLSYAEMLQELHSLRVYETHFG 60

Query: 61  TDVKLDADELSQLYGAVFKQFDRDSDGKVDVDEFMMGMKNMMLAIAEGMGFLPIQMALEK 120
            D K D DELS+LYGAVF QFDR+S+G+VD++EFM G K +M+AIAEGMGFLP+QMALE+
Sbjct: 61  VDAKPDPDELSRLYGAVFMQFDRNSNGEVDLEEFMAGTKRIMVAIAEGMGFLPLQMALEE 120

Query: 121 DGFLMKAVQREATK 135
           DGFLMKAV+ E ++
Sbjct: 121 DGFLMKAVRSEKSR 134

[Close]

BLAST of Pay0009966 vs. NCBI nr
Match: XP_002264788.2 (PREDICTED: uncharacterized protein LOC100243037 [Vitis vinifera])

HSP 1 Score: 174.9 bits (442), Expect = 4.9e-40
Identity = 86/134 (64.18%), Postives = 106/134 (79.10%), Query Frame = 0


Query: 1   MSVELLDGATIVNFVEDEEAFNGWTREHFTRLDTDRDGFLTYAEMLKEFYTLRVSEADFG 60
           MSVE+LDGATIV+FVEDEEAFNG   + F+ LDT+ DGFL+YAEMLKEF +LRV E  FG
Sbjct: 1   MSVEVLDGATIVSFVEDEEAFNGLIHDRFSNLDTNHDGFLSYAEMLKEFQSLRVFETHFG 60

Query: 61  TDVKLDADELSQLYGAVFKQFDRDSDGKVDVDEFMMGMKNMMLAIAEGMGFLPIQMALEK 120
            DVK D DEL+ +Y ++F +FD D++G VD++EF    K MMLA+A G+GFLP+QM LE+
Sbjct: 61  IDVKRDPDELAHVYDSLFVKFDHDANGAVDLEEFRKETKQMMLAMANGLGFLPVQMVLEE 120

Query: 121 DGFLMKAVQREATK 135
           D FL KAVQREA K
Sbjct: 121 DSFLKKAVQREAIK 134

[Close]

BLAST of Pay0009966 vs. TAIR 10
Match: AT2G44310.1 (Calcium-binding EF-hand family protein )

HSP 1 Score: 120.9 bits (302), Expect = 7.8e-28
Identity = 62/136 (45.59%), Postives = 89/136 (65.44%), Query Frame = 0


Query: 1   MSVELLDGATIVNFVEDEEAFNGWTREHFTRLDTDRDGFLTYAEMLKEFYTLRVSEADFG 60
           M V L+DG+T+ +FV+DEE F     E F  LD ++DG L+ +E+ K F ++R+ E+ FG
Sbjct: 1   MGVVLIDGSTVRSFVDDEEQFKKSVDERFAALDLNKDGVLSRSELRKAFESMRLLESHFG 60

Query: 61  TDVKLDADELSQLYGAVFKQFDRDSDGKVDVDEFMMGMKNMMLAIAEGMGFLPIQMAL-- 120
            DV    DEL+ LY ++F++FD D  G VD++EF   MK ++LAIA+G+G  PI M L  
Sbjct: 61  VDVVTPQDELTNLYDSIFEKFDTDQSGSVDLEEFRSEMKKIVLAIADGLGSCPITMVLDD 120

Query: 121 EKDGFLMKAVQREATK 135
           + D FL KA   EA+K
Sbjct: 121 DDDNFLKKAADLEASK 136

[Close]

BLAST of Pay0009966 vs. TAIR 10
Match: AT1G54530.1 (Calcium-binding EF hand family protein )

HSP 1 Score: 60.8 bits (146), Expect = 9.6e-10
Identity = 35/128 (27.34%), Postives = 66/128 (51.56%), Query Frame = 0


Query: 5   LLDGATIVNFVEDEEAFNGWTREHFTRLDTDRDGFLTYAEMLKEFYTLRVSEADFGTDVK 64
           ++   T++ F+ D ++F   T ++F  LD D++G L+ +E+ +    +   E++      
Sbjct: 5   VITSKTLIGFLSDTKSFESITNDYFQILDLDKNGMLSPSELRQGLNNVVAVESEVA---- 64

Query: 65  LDADELSQLYGAVFKQFDRDSDGKVDVDEFMMGMKNMMLAIAEGMGFLPIQMALEKDGFL 124
              DE   +Y A+F++F  D   K     F   +  ++ A+A G+G  P+ M +  DG +
Sbjct: 65  -PGDETDNVYNAIFERFGEDLVPK----NFRDLIAEILTAMARGIGNSPVIMVVHNDGLI 123

Query: 125 MKAVQREA 133
           MKAV  E+
Sbjct: 125 MKAVLHES 123

The following BLAST results are available for this feature:

BLAST of Pay0009966 vs.


Match Name	E-value	Identity	Description

BLAST of Pay0009966 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7UY59	1.1e-69	99.27	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A1S3C0M6	1.1e-69	99.27	uncharacterized protein LOC103495656 OS=Cucumis melo OX=3656 GN=LOC103495656 PE=...	[more]
A0A6J1C2T1	5.4e-45	68.66	uncharacterized protein LOC111007741 OS=Momordica charantia OX=3673 GN=LOC111007...	[more]
F6HIA0	2.4e-40	64.18	Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VIT_12s0059g00370 PE=4 SV=...	[more]
A0A5J5A3Z9	4.0e-40	62.04	Uncharacterized protein OS=Nyssa sinensis OX=561372 GN=F0562_011209 PE=4 SV=1	[more]

BLAST of Pay0009966 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008455505.1	2.2e-69	99.27	PREDICTED: uncharacterized protein LOC103495656 [Cucumis melo] >KAA0059136.1 unc...	[more]
XP_004144609.1	5.2e-66	95.62	uncharacterized protein LOC101208968 [Cucumis sativus] >KAE8645726.1 hypothetica...	[more]
XP_038887184.1	1.2e-62	91.24	uncharacterized protein LOC120077371 [Benincasa hispida]	[more]
XP_022135904.1	1.1e-44	68.66	uncharacterized protein LOC111007741 [Momordica charantia]	[more]
XP_002264788.2	4.9e-40	64.18	PREDICTED: uncharacterized protein LOC100243037 [Vitis vinifera]	[more]

BLAST of Pay0009966 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G44310.1	7.8e-28	45.59	Calcium-binding EF-hand family protein	[more]
AT1G54530.1	9.6e-10	27.34	Calcium-binding EF hand family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (Payzawat) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002048	EF-hand domain	SMART	SM00054	efh_1	coord: 24..52 e-value: 5.6 score: 11.7 coord: 73..101 e-value: 8.8E-4 score: 28.6
IPR002048	EF-hand domain	PFAM	PF13499	EF-hand_7	coord: 26..96 e-value: 9.1E-11 score: 42.1
IPR002048	EF-hand domain	PROSITE	PS50222	EF_HAND_2	coord: 69..104 score: 13.341799
None	No IPR available	GENE3D	1.10.238.10		coord: 5..110 e-value: 1.5E-12 score: 49.8
None	No IPR available	PANTHER	PTHR34574:SF10	CALCIUM-BINDING EF-HAND FAMILY PROTEIN-LIKE	coord: 1..133
None	No IPR available	PANTHER	PTHR34574	CALCIUM-BINDING EF-HAND FAMILY PROTEIN-RELATED	coord: 1..133
IPR018247	EF-Hand 1, calcium-binding site	PROSITE	PS00018	EF_HAND_1	coord: 33..45
IPR018247	EF-Hand 1, calcium-binding site	PROSITE	PS00018	EF_HAND_1	coord: 82..94
IPR011992	EF-hand domain pair	SUPERFAMILY	47473	EF-hand	coord: 26..100

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Pay0009966.1	Pay0009966.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0005509	calcium ion binding