Pay0009947 (gene) Melon (Payzawat) v1

Overview


Name	Pay0009947
Type	gene
Organism	Cucumis melo L. var. inodorus cv. Payzawat (Melon (Payzawat) v1)
Description	DNA repair RAD52-like protein 2, chloroplastic
Location	chr07: 3130228 .. 3133356 (-)
RNA-Seq Expression	Pay0009947
Synteny	Pay0009947

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TCGAAAATCATTCCAATAAGCTAAAAGTTGGATTGAAGTTGGGCGGGAATCTGTATATAAGAAACGACGCCAGATGCCAAATTCTGTTCTTGCTCGACTTTGCTTTGTACTCTTCTTAGTTCTTTCAATTCTCTCTCTTATGAAATCATTCCCGCAAATGAATTTCCTTATGCTTTCAATTTCTCTTCAAGAGGTTTTGATTGAACGTTTCATCAAAATATGGACTTCAATGGTTGTTGGTGAAGATCCGTACAGTTCGGTCAAAGAAGAAACGAGGGTGGTCAAACTCAATTTCTATACGGTGTATGACAATTTGTAGCCATTTGAAAACTAACCTGTGAAGGGTGAAGTTGATCTGGAAGACCCAATAACTTTCTAAGCCCACTTCAAAACTAAAGCCCATGGTGAAAAACCCTTGATCTGACAAACTATCTACATCATTTCCTCAAAGAGTTAGGTGAGGGGAAGAAAAGTTAGCTGCCGTTTCAAGTTGTAGAGAGGATCCTAAGCCGCCGTGCCAATTTTTGATCAAGAACTGCATCCAACTTGTCTCCGGCGACGTTAAAATCAAGGTTTTGCCGTTGCTAAAAATGAAACTTATTTGTTGAAGATCTATAGCTTTTTGACTATTTGAACTTTTGAGATATTTACAGATTTCTTTTTCTTAAAACCATTGCAGATCTATCGAAGAAAGCTCCAAACGTGAGTGGATCTAATCGGATCTGAAATCCGAAAATTATCGGGAGAAAAATATTTTCAGCGTGGTTGGATAAATTGAAGGTTGGTTTGATCTGTAACCCCTCTGGTGCTCATCTTCACTAAATTCGTTCCACTATGCATCTACTTTATACTTTCGGTTGCTGATTTCCAATTGTTTTGACTTTTGTGTGCTTTTTTGCAATTTTTTCTGCCATTTTATCTGATTAAACTCAATCGTAGAGGGAAATTTAAACAAGTCCACAGTTAGTCTAGGCAATTTAGTATAGACAATTTCAAGTGGATGCTTCCCTGCTGAGTGAGAGATTTTGTGTAGTTGAATGCAACCACAGCTTGAGGCAGTGCTATGTTCCACTGCTTTGGTTTTGGCTGCTAAGGGACCTTATTAGATTGCTCAAAGTTATATTGATCACCTCTGTATGGCCGTCGGTCTTTGGATGACCAGTGGTACTAAATTGCAACCCTTTCTTTATCCACCACACCTTATATGGGGAAGGGTGTGCATCTGGTTTTAAGTTTGGTGTTGTAAATAGGGGTTTAGCAACTTTTCTTTTTCACTATTAATCAAAGTGTTTTTAGGATCAAGTAATTCTAATGCAGAAACTCACAAGTGCCAACTTGTGAGTTTGCTAAGTTTGTTATGCGTCCTCGTTGGCCACAGCAAATACACTTTCCGAGTGTTGGTTTGGCATAGGAATAGTGCTTTGGGATTCTGAGTTATCTGTAGGCTTAAAATTATTTTCTTTTGTTTTGCCAAAAGGATAAGTGGAAGTACCACCTATTTCAAACGTTCTTTGGGATTTCAAAATTTTCTTCTTTGAGATTTATCGTGATACTCCAGCTGGATCTTTCTATTGCATTTGGGGTTTTGTGAATCTCTTTCTATTGTGGCTGTCCAATCCACTGATTGCACCTTGGGTTGGGATGCTGTTTTTTGGTTGATCTTGATTAATTTACAGGTTGTCTTTTTTCTTTATGTGCAGGTATGTTAAATTCTTGGTGTCACTCTTGAAGGCATTCTTGTGCTTGTAAGCTACCTTTGTTTCTGTTTTATCGACTCCGAATTGTTCTCTTTGCCTTCTTTCACGATTGTTGATTTTTTCGCTAGTGTGGATCACTGTCCCTGTCACCAACCGCTCAAATTGAATGCTCTGATTCTAAATTTATGTCATTTAGTATTTGGTAAACACCTTGCATATTTGCGAGAGAGTTGAGTTTAACTTAAGTCATCATTGGTTGCCCCTGCTCTGCTTCATTGTTATTATGGCTCTCCAAACGTATGCTCATTCCCAGCTCTTAGGACCTCACCCCACTGCCTTATCCTCCATACACTCTTCCTACTCAACTAGTGAGATCCGACTCCCTCTAACTTCTACCACTTCAAGACGACCCCATCTTCGTCTTGTTTGCTCCAGCAGTGATGCTAATAGTAGTAAGAAGGGAGTACCGAATTCCAACTATGTTGTTCCACTCAACAAATCTTTTTCCCCAGCTAACTCATCTTGCATCACTCGACCCCTTGCTGAGATCCTCCGCGATCTAAACAAGAGAATCCCCGATAACATCGCTCAGAAAGCGCCTCATTCTGACACACATGATCGTTCTCCCACCACTTTCATCCCTTGGTTTCATGCTAATAGGATGTTGAGTTTCTATGCCCCTGGATGGTGTGGAGAGATACGAGATGTCATATTTTCTGACAATGGTAGTGTAACTGTCGTTTATCGTGTGACTGTTCGAGGATCGGATGGAGAGGCACATCGTGAATCGACAGGAACTGTATCGGCTACTGATAGCAATATTGAGGATCCTGTAGCTGCTGCAGAGGAAATAGCTTTTTGCAAGGCTTGTGCAAGATTTGGCCTCGGTTTGTATCTCTATCATGAAGAATGAATGAAGCAAACAACAGAATAATGCCAAGCTTCCGACGTGTAATAAAGTTTTTCGTTTCAATATTTTGTAGAAATGAGTATAATCTTGGCCTTGACACTTGAGAGGTGTACAATAGTAGTTTTAGATGATTCCGTGGAGCTTGAACTTTAGCAAAGTCATGTGTGGATACTTCCATACTATGTTGCTGATTTATATCTTTTCGATTTACACGTGTACTCCATTTCAAATATGCATTTTCAGATTTACCCTTTGTGTTCTTCTTTGAGATTACCCTTTTCAAATGGATTCTTCATAGTTGCTTTTATTGTTTGAGGCACCGGAAATTTGGCCTCAAATTTCCCTGTTTCTTCCAAGAAAAGAAATTTCAATTTTTTTTTTCTGGGAGAGGCAAAAAGAGGAGTTTTGTAATTTGTGTAGAGTTTGAACTTTTGACTGGGGGAATGGTGGGCCATTGTCTCCTTGCATTTATGTTGGTGTGCAATCCTAACACAAGTCTGATTTCTGCCTTACCTTTGCCGG

mRNA sequence

TCGAAAATCATTCCAATAAGCTAAAAGTTGGATTGAAGTTGGGCGGGAATCTGTATATAAGAAACGACGCCAGATGCCAAATTCTGTTCTTGCTCGACTTTGCTTTGTACTCTTCTTAGTTCTTTCAATTCTCTCTCTTATGAAATCATTCCCGCAAATGAATTTCCTTATGCTTTCAATTTCTCTTCAAGAGGTTTTGATTGAACGTTTCATCAAAATATGGACTTCAATGGTTGTTGGTGAAGATCCGTACAGTTCGGTCAAAGAAGAAACGAGGGTGGTCAAACTCAATTTCTATACGGTGTATGACAATTTGTAGCCATTTGAAAACTAACCTGTGAAGGGTGAAGTTGATCTGGAAGACCCAATAACTTTCTAAGCCCACTTCAAAACTAAAGCCCATGGTGAAAAACCCTTGATCTGACAAACTATCTACATCATTTCCTCAAAGAGTTAGGTGAGGGGAAGAAAAGTTAGCTGCCGTTTCAAGTTGTAGAGAGGATCCTAAGCCGCCGTGCCAATTTTTGATCAAGAACTGCATCCAACTTGTCTCCGGCGACGTTAAAATCAAGATCTATCGAAGAAAGCTCCAAACGTGAGTGGATCTAATCGGATCTGAAATCCGAAAATTATCGGGAGAAAAATATTTTCAGCGTGGTTGGATAAATTGAAGGTATGTTAAATTCTTGGTGTCACTCTTGAAGGCATTCTTGTGCTTGTAAGCTACCTTTGTTTCTGTTTTATCGACTCCGAATTGTTCTCTTTGCCTTCTTTCACGATTGTTGATTTTTTCGCTAGTGTGGATCACTGTCCCTGTCACCAACCGCTCAAATTGAATGCTCTGATTCTAAATTTATGTCATTTAGTATTTGGTAAACACCTTGCATATTTGCGAGAGAGTTGAGTTTAACTTAAGTCATCATTGGTTGCCCCTGCTCTGCTTCATTGTTATTATGGCTCTCCAAACGTATGCTCATTCCCAGCTCTTAGGACCTCACCCCACTGCCTTATCCTCCATACACTCTTCCTACTCAACTAGTGAGATCCGACTCCCTCTAACTTCTACCACTTCAAGACGACCCCATCTTCGTCTTGTTTGCTCCAGCAGTGATGCTAATAGTAGTAAGAAGGGAGTACCGAATTCCAACTATGTTGTTCCACTCAACAAATCTTTTTCCCCAGCTAACTCATCTTGCATCACTCGACCCCTTGCTGAGATCCTCCGCGATCTAAACAAGAGAATCCCCGATAACATCGCTCAGAAAGCGCCTCATTCTGACACACATGATCGTTCTCCCACCACTTTCATCCCTTGGTTTCATGCTAATAGGATGTTGAGTTTCTATGCCCCTGGATGGTGTGGAGAGATACGAGATGTCATATTTTCTGACAATGGTAGTGTAACTGTCGTTTATCGTGTGACTGTTCGAGGATCGGATGGAGAGGCACATCGTGAATCGACAGGAACTGTATCGGCTACTGATAGCAATATTGAGGATCCTGTAGCTGCTGCAGAGGAAATAGCTTTTTGCAAGGCTTGTGCAAGATTTGGCCTCGGTTTGTATCTCTATCATGAAGAATGAATGAAGCAAACAACAGAATAATGCCAAGCTTCCGACGTGTAATAAAGTTTTTCGTTTCAATATTTTGTAGAAATGAGTATAATCTTGGCCTTGACACTTGAGAGGTGTACAATAGTAGTTTTAGATGATTCCGTGGAGCTTGAACTTTAGCAAAGTCATGTGTGGATACTTCCATACTATGTTGCTGATTTATATCTTTTCGATTTACACGTGTACTCCATTTCAAATATGCATTTTCAGATTTACCCTTTGTGTTCTTCTTTGAGATTACCCTTTTCAAATGGATTCTTCATAGTTGCTTTTATTGTTTGAGGCACCGGAAATTTGGCCTCAAATTTCCCTGTTTCTTCCAAGAAAAGAAATTTCAATTTTTTTTTTCTGGGAGAGGCAAAAAGAGGAGTTTTGTAATTTGTGTAGAGTTTGAACTTTTGACTGGGGGAATGGTGGGCCATTGTCTCCTTGCATTTATGTTGGTGTGCAATCCTAACACAAGTCTGATTTCTGCCTTACCTTTGCCGG

Coding sequence (CDS)

ATGGCTCTCCAAACGTATGCTCATTCCCAGCTCTTAGGACCTCACCCCACTGCCTTATCCTCCATACACTCTTCCTACTCAACTAGTGAGATCCGACTCCCTCTAACTTCTACCACTTCAAGACGACCCCATCTTCGTCTTGTTTGCTCCAGCAGTGATGCTAATAGTAGTAAGAAGGGAGTACCGAATTCCAACTATGTTGTTCCACTCAACAAATCTTTTTCCCCAGCTAACTCATCTTGCATCACTCGACCCCTTGCTGAGATCCTCCGCGATCTAAACAAGAGAATCCCCGATAACATCGCTCAGAAAGCGCCTCATTCTGACACACATGATCGTTCTCCCACCACTTTCATCCCTTGGTTTCATGCTAATAGGATGTTGAGTTTCTATGCCCCTGGATGGTGTGGAGAGATACGAGATGTCATATTTTCTGACAATGGTAGTGTAACTGTCGTTTATCGTGTGACTGTTCGAGGATCGGATGGAGAGGCACATCGTGAATCGACAGGAACTGTATCGGCTACTGATAGCAATATTGAGGATCCTGTAGCTGCTGCAGAGGAAATAGCTTTTTGCAAGGCTTGTGCAAGATTTGGCCTCGGTTTGTATCTCTATCATGAAGAATGA

Protein sequence

MALQTYAHSQLLGPHPTALSSIHSSYSTSEIRLPLTSTTSRRPHLRLVCSSSDANSSKKGVPNSNYVVPLNKSFSPANSSCITRPLAEILRDLNKRIPDNIAQKAPHSDTHDRSPTTFIPWFHANRMLSFYAPGWCGEIRDVIFSDNGSVTVVYRVTVRGSDGEAHRESTGTVSATDSNIEDPVAAAEEIAFCKACARFGLGLYLYHEE

Homology

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BLAST of Pay0009947 vs. ExPASy Swiss-Prot
Match: Q9FIJ4 (DNA repair RAD52-like protein 2, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=RAD52-2 PE=1 SV=1)

HSP 1 Score: 230.7 bits (587), Expect = 1.5e-59
Identity = 120/189 (63.49%), Postives = 144/189 (76.19%), Query Frame = 0


Query: 24  SSYSTSEIRLPLTSTTSRRPHLRLVCSSSDAN----SSKKGVPNSNYVVPLNKSFSPANS 83
           SS ST+  R+ L+   +   +  + CS           KK VPNSNYVVP++K    ++S
Sbjct: 15  SSPSTAAARIKLSPFRTVAVNRGVRCSGGGVGGGDAGKKKAVPNSNYVVPIDKF---SSS 74

Query: 84  SCITRPLAEILRDLNKRIPDNIAQKAPHSDTHDRSPTTFIPWFHANRMLSFYAPGWCGEI 143
           S ITRPL EILRDLNK+IPDNI  K+    +   + + FIPW+HANRMLSFYAPGWCGE+
Sbjct: 75  SSITRPLIEILRDLNKKIPDNIV-KSHDPPSTSAATSGFIPWYHANRMLSFYAPGWCGEV 134

Query: 144 RDVIFSDNGSVTVVYRVTVRGSDGEAHRESTGTVSATDSNIEDPVAAAEEIAFCKACARF 203
           RDVIFS+NG+VTVVYR+T+RGSDGEAHRESTGTV+ TD +IEDPV AAEEIAFC+ACARF
Sbjct: 135 RDVIFSENGNVTVVYRLTIRGSDGEAHRESTGTVTTTDDHIEDPVTAAEEIAFCRACARF 194

Query: 204 GLGLYLYHE 209
           GLGLYLYHE
Sbjct: 195 GLGLYLYHE 199

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BLAST of Pay0009947 vs. ExPASy Swiss-Prot
Match: Q9FVV7 (DNA repair RAD52-like protein 1, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=RAD52-1 PE=1 SV=1)

HSP 1 Score: 132.5 bits (332), Expect = 5.6e-30
Identity = 66/132 (50.00%), Postives = 90/132 (68.18%), Query Frame = 0


Query: 79  SSCITRPLAEILRDLNKRIPDNIAQKAPHSDTHDRSPTTFIPWFHANRMLSFYAPGWCGE 138
           +S I+RPLAEIL++LNK++PD++ +    +   D     +IPW   NR+++ +AP W GE
Sbjct: 47  TSGISRPLAEILKELNKKVPDSVIR----TRVEDGCSIKYIPWHIVNRIMNMHAPEWSGE 106

Query: 139 IRDVIFS-DNGSVTVVYRVTVRGSDGEAHRESTGTVSATDSNIEDPVAAAEEIAFCKACA 198
           +R V +S D  +VTV YRVT+ G+D E  RESTGT S  D    D V  AE +AF +ACA
Sbjct: 107 VRSVTYSPDGNTVTVAYRVTLYGTDAEIFRESTGTTSVDDKGYGDAVQKAEAMAFRRACA 166

Query: 199 RFGLGLYLYHEE 210
           RFGLGL+LYHE+
Sbjct: 167 RFGLGLHLYHED 174

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BLAST of Pay0009947 vs. ExPASy TrEMBL
Match: A0A1S4DZ99 (uncharacterized protein LOC103493818 OS=Cucumis melo OX=3656 GN=LOC103493818 PE=4 SV=1)

HSP 1 Score: 420.6 bits (1080), Expect = 3.8e-114
Identity = 208/209 (99.52%), Postives = 209/209 (100.00%), Query Frame = 0


Query: 1   MALQTYAHSQLLGPHPTALSSIHSSYSTSEIRLPLTSTTSRRPHLRLVCSSSDANSSKKG 60
           MALQTYAHSQLLGPHPTALSSIHSSYSTSEIRLPL+STTSRRPHLRLVCSSSDANSSKKG
Sbjct: 1   MALQTYAHSQLLGPHPTALSSIHSSYSTSEIRLPLSSTTSRRPHLRLVCSSSDANSSKKG 60

Query: 61  VPNSNYVVPLNKSFSPANSSCITRPLAEILRDLNKRIPDNIAQKAPHSDTHDRSPTTFIP 120
           VPNSNYVVPLNKSFSPANSSCITRPLAEILRDLNKRIPDNIAQKAPHSDTHDRSPTTFIP
Sbjct: 61  VPNSNYVVPLNKSFSPANSSCITRPLAEILRDLNKRIPDNIAQKAPHSDTHDRSPTTFIP 120

Query: 121 WFHANRMLSFYAPGWCGEIRDVIFSDNGSVTVVYRVTVRGSDGEAHRESTGTVSATDSNI 180
           WFHANRMLSFYAPGWCGEIRDVIFSDNGSVTVVYRVTVRGSDGEAHRESTGTVSATDSNI
Sbjct: 121 WFHANRMLSFYAPGWCGEIRDVIFSDNGSVTVVYRVTVRGSDGEAHRESTGTVSATDSNI 180

Query: 181 EDPVAAAEEIAFCKACARFGLGLYLYHEE 210
           EDPVAAAEEIAFCKACARFGLGLYLYHEE
Sbjct: 181 EDPVAAAEEIAFCKACARFGLGLYLYHEE 209

[Close]

BLAST of Pay0009947 vs. ExPASy TrEMBL
Match: A0A5A7VFI5 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold134G00600 PE=4 SV=1)

HSP 1 Score: 420.6 bits (1080), Expect = 3.8e-114
Identity = 208/209 (99.52%), Postives = 209/209 (100.00%), Query Frame = 0


Query: 1   MALQTYAHSQLLGPHPTALSSIHSSYSTSEIRLPLTSTTSRRPHLRLVCSSSDANSSKKG 60
           MALQTYAHSQLLGPHPTALSSIHSSYSTSEIRLPL+STTSRRPHLRLVCSSSDANSSKKG
Sbjct: 1   MALQTYAHSQLLGPHPTALSSIHSSYSTSEIRLPLSSTTSRRPHLRLVCSSSDANSSKKG 60

Query: 61  VPNSNYVVPLNKSFSPANSSCITRPLAEILRDLNKRIPDNIAQKAPHSDTHDRSPTTFIP 120
           VPNSNYVVPLNKSFSPANSSCITRPLAEILRDLNKRIPDNIAQKAPHSDTHDRSPTTFIP
Sbjct: 61  VPNSNYVVPLNKSFSPANSSCITRPLAEILRDLNKRIPDNIAQKAPHSDTHDRSPTTFIP 120

Query: 121 WFHANRMLSFYAPGWCGEIRDVIFSDNGSVTVVYRVTVRGSDGEAHRESTGTVSATDSNI 180
           WFHANRMLSFYAPGWCGEIRDVIFSDNGSVTVVYRVTVRGSDGEAHRESTGTVSATDSNI
Sbjct: 121 WFHANRMLSFYAPGWCGEIRDVIFSDNGSVTVVYRVTVRGSDGEAHRESTGTVSATDSNI 180

Query: 181 EDPVAAAEEIAFCKACARFGLGLYLYHEE 210
           EDPVAAAEEIAFCKACARFGLGLYLYHEE
Sbjct: 181 EDPVAAAEEIAFCKACARFGLGLYLYHEE 209

[Close]

BLAST of Pay0009947 vs. ExPASy TrEMBL
Match: A0A0A0L5X0 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G663650 PE=4 SV=1)

HSP 1 Score: 402.5 bits (1033), Expect = 1.1e-108
Identity = 202/209 (96.65%), Postives = 204/209 (97.61%), Query Frame = 0


Query: 1   MALQTYAHSQLLGPHPTALSSIHSSYSTSEIRLPLTSTTSRRPHLRLVCSSSDANSSKKG 60
           MALQTYAHSQL GPH TALSSI SSYSTSEIRLPLTSTTSRR HLRLVCSSSDANS+KKG
Sbjct: 1   MALQTYAHSQLSGPHLTALSSILSSYSTSEIRLPLTSTTSRRRHLRLVCSSSDANSNKKG 60

Query: 61  VPNSNYVVPLNKSFSPANSSCITRPLAEILRDLNKRIPDNIAQKAPHSDTHDRSPTTFIP 120
           VPNSNYVVPLNKSFSPANSSCITRPLAEILRDLNKRIPDNIAQKAPHSDT+DRSP TFIP
Sbjct: 61  VPNSNYVVPLNKSFSPANSSCITRPLAEILRDLNKRIPDNIAQKAPHSDTNDRSPATFIP 120

Query: 121 WFHANRMLSFYAPGWCGEIRDVIFSDNGSVTVVYRVTVRGSDGEAHRESTGTVSATDSNI 180
           WFHANRMLSFYAPGWCGEIRDVIFSDNGSVTVVYRVTVRGSDGEAHRESTGTVSATDSNI
Sbjct: 121 WFHANRMLSFYAPGWCGEIRDVIFSDNGSVTVVYRVTVRGSDGEAHRESTGTVSATDSNI 180

Query: 181 EDPVAAAEEIAFCKACARFGLGLYLYHEE 210
           EDPVAAAEEIAFCKACARFGLGLYLYHEE
Sbjct: 181 EDPVAAAEEIAFCKACARFGLGLYLYHEE 209

[Close]

BLAST of Pay0009947 vs. ExPASy TrEMBL
Match: A0A6J1FJJ9 (DNA repair RAD52-like protein 2, chloroplastic OS=Cucurbita moschata OX=3662 GN=LOC111446320 PE=4 SV=1)

HSP 1 Score: 361.3 bits (926), Expect = 2.7e-96
Identity = 185/209 (88.52%), Postives = 189/209 (90.43%), Query Frame = 0


Query: 1   MALQTYAHSQLLGPHPTALSSIHSSYSTSEIRLPLTSTTSRRPHLRLVCSSSDANSSKKG 60
           MALQTYAHSQLLGP   A S + SSYS SEIRLP  ST +RR HL LVCSSSDA S KKG
Sbjct: 1   MALQTYAHSQLLGPRLPAFSFLPSSYSVSEIRLPQISTATRR-HLHLVCSSSDA-SGKKG 60

Query: 61  VPNSNYVVPLNKSFSPANSSCITRPLAEILRDLNKRIPDNIAQKAPHSDTHDRSPTTFIP 120
           VPN+NYVVPLNKSFSPANSSCITRPLAEILRDLNKRIPDNIA K PHSD  +R P TFIP
Sbjct: 61  VPNTNYVVPLNKSFSPANSSCITRPLAEILRDLNKRIPDNIAPKVPHSDPQNRPPATFIP 120

Query: 121 WFHANRMLSFYAPGWCGEIRDVIFSDNGSVTVVYRVTVRGSDGEAHRESTGTVSATDSNI 180
           WFHANRMLSFYAPGWCGEIRDVIFSDNGSVTVVYRVTVRGSDGEAHRESTGTVSATDSNI
Sbjct: 121 WFHANRMLSFYAPGWCGEIRDVIFSDNGSVTVVYRVTVRGSDGEAHRESTGTVSATDSNI 180

Query: 181 EDPVAAAEEIAFCKACARFGLGLYLYHEE 210
           EDPVAAAEEIAFCKACARFGLGLYLYHEE
Sbjct: 181 EDPVAAAEEIAFCKACARFGLGLYLYHEE 207

[Close]

BLAST of Pay0009947 vs. ExPASy TrEMBL
Match: A0A6J1J3T8 (DNA repair RAD52-like protein 2, chloroplastic OS=Cucurbita maxima OX=3661 GN=LOC111481079 PE=4 SV=1)

HSP 1 Score: 354.0 bits (907), Expect = 4.3e-94
Identity = 181/209 (86.60%), Postives = 187/209 (89.47%), Query Frame = 0


Query: 1   MALQTYAHSQLLGPHPTALSSIHSSYSTSEIRLPLTSTTSRRPHLRLVCSSSDANSSKKG 60
           MALQTYAH QLLGP   A S + SSYS SEIRLP  ST +RR HL LVCSSS+A S KKG
Sbjct: 1   MALQTYAHFQLLGPRLPAFSFLPSSYSVSEIRLPQISTATRR-HLHLVCSSSEA-SGKKG 60

Query: 61  VPNSNYVVPLNKSFSPANSSCITRPLAEILRDLNKRIPDNIAQKAPHSDTHDRSPTTFIP 120
           VPN+NYVVPLNKSFSPANSSCITRPLAEILRDLNKRIPDNIA K P SD  +R P TFIP
Sbjct: 61  VPNTNYVVPLNKSFSPANSSCITRPLAEILRDLNKRIPDNIAPKVPQSDPQNRPPATFIP 120

Query: 121 WFHANRMLSFYAPGWCGEIRDVIFSDNGSVTVVYRVTVRGSDGEAHRESTGTVSATDSNI 180
           WFHANRMLSFYAPGWCGEIRDVIFSDNGSVTVVYRVTVRGSDGEAHRESTGTVSATDSN+
Sbjct: 121 WFHANRMLSFYAPGWCGEIRDVIFSDNGSVTVVYRVTVRGSDGEAHRESTGTVSATDSNV 180

Query: 181 EDPVAAAEEIAFCKACARFGLGLYLYHEE 210
           EDPVAAAEEIAFCKACARFGLGLYLYHEE
Sbjct: 181 EDPVAAAEEIAFCKACARFGLGLYLYHEE 207

[Close]

BLAST of Pay0009947 vs. NCBI nr
Match: XP_008452970.1 (PREDICTED: uncharacterized protein LOC103493818 [Cucumis melo] >XP_016901316.1 PREDICTED: uncharacterized protein LOC103493818 [Cucumis melo] >KAA0064645.1 uncharacterized protein E6C27_scaffold255G003690 [Cucumis melo var. makuwa] >TYK19947.1 uncharacterized protein E5676_scaffold134G00600 [Cucumis melo var. makuwa])

HSP 1 Score: 420.6 bits (1080), Expect = 7.8e-114
Identity = 208/209 (99.52%), Postives = 209/209 (100.00%), Query Frame = 0


Query: 1   MALQTYAHSQLLGPHPTALSSIHSSYSTSEIRLPLTSTTSRRPHLRLVCSSSDANSSKKG 60
           MALQTYAHSQLLGPHPTALSSIHSSYSTSEIRLPL+STTSRRPHLRLVCSSSDANSSKKG
Sbjct: 1   MALQTYAHSQLLGPHPTALSSIHSSYSTSEIRLPLSSTTSRRPHLRLVCSSSDANSSKKG 60

Query: 61  VPNSNYVVPLNKSFSPANSSCITRPLAEILRDLNKRIPDNIAQKAPHSDTHDRSPTTFIP 120
           VPNSNYVVPLNKSFSPANSSCITRPLAEILRDLNKRIPDNIAQKAPHSDTHDRSPTTFIP
Sbjct: 61  VPNSNYVVPLNKSFSPANSSCITRPLAEILRDLNKRIPDNIAQKAPHSDTHDRSPTTFIP 120

Query: 121 WFHANRMLSFYAPGWCGEIRDVIFSDNGSVTVVYRVTVRGSDGEAHRESTGTVSATDSNI 180
           WFHANRMLSFYAPGWCGEIRDVIFSDNGSVTVVYRVTVRGSDGEAHRESTGTVSATDSNI
Sbjct: 121 WFHANRMLSFYAPGWCGEIRDVIFSDNGSVTVVYRVTVRGSDGEAHRESTGTVSATDSNI 180

Query: 181 EDPVAAAEEIAFCKACARFGLGLYLYHEE 210
           EDPVAAAEEIAFCKACARFGLGLYLYHEE
Sbjct: 181 EDPVAAAEEIAFCKACARFGLGLYLYHEE 209

[Close]

BLAST of Pay0009947 vs. NCBI nr
Match: XP_004145544.1 (DNA repair RAD52-like protein 2, chloroplastic [Cucumis sativus] >XP_031740574.1 DNA repair RAD52-like protein 2, chloroplastic [Cucumis sativus] >KGN55506.1 hypothetical protein Csa_011927 [Cucumis sativus])

HSP 1 Score: 402.5 bits (1033), Expect = 2.2e-108
Identity = 202/209 (96.65%), Postives = 204/209 (97.61%), Query Frame = 0


Query: 1   MALQTYAHSQLLGPHPTALSSIHSSYSTSEIRLPLTSTTSRRPHLRLVCSSSDANSSKKG 60
           MALQTYAHSQL GPH TALSSI SSYSTSEIRLPLTSTTSRR HLRLVCSSSDANS+KKG
Sbjct: 1   MALQTYAHSQLSGPHLTALSSILSSYSTSEIRLPLTSTTSRRRHLRLVCSSSDANSNKKG 60

Query: 61  VPNSNYVVPLNKSFSPANSSCITRPLAEILRDLNKRIPDNIAQKAPHSDTHDRSPTTFIP 120
           VPNSNYVVPLNKSFSPANSSCITRPLAEILRDLNKRIPDNIAQKAPHSDT+DRSP TFIP
Sbjct: 61  VPNSNYVVPLNKSFSPANSSCITRPLAEILRDLNKRIPDNIAQKAPHSDTNDRSPATFIP 120

Query: 121 WFHANRMLSFYAPGWCGEIRDVIFSDNGSVTVVYRVTVRGSDGEAHRESTGTVSATDSNI 180
           WFHANRMLSFYAPGWCGEIRDVIFSDNGSVTVVYRVTVRGSDGEAHRESTGTVSATDSNI
Sbjct: 121 WFHANRMLSFYAPGWCGEIRDVIFSDNGSVTVVYRVTVRGSDGEAHRESTGTVSATDSNI 180

Query: 181 EDPVAAAEEIAFCKACARFGLGLYLYHEE 210
           EDPVAAAEEIAFCKACARFGLGLYLYHEE
Sbjct: 181 EDPVAAAEEIAFCKACARFGLGLYLYHEE 209

[Close]

BLAST of Pay0009947 vs. NCBI nr
Match: XP_038897318.1 (DNA repair RAD52-like protein 2, chloroplastic [Benincasa hispida])

HSP 1 Score: 386.7 bits (992), Expect = 1.2e-103
Identity = 193/209 (92.34%), Postives = 198/209 (94.74%), Query Frame = 0


Query: 1   MALQTYAHSQLLGPHPTALSSIHSSYSTSEIRLPLTSTTSRRPHLRLVCSSSDANSSKKG 60
           MALQTYAHSQL  PH  AL S+ SSY+TSEIRLP+ ST SRR +LRLVCSSSDANSSKKG
Sbjct: 1   MALQTYAHSQLSRPHLPALLSLPSSYTTSEIRLPVISTASRRRYLRLVCSSSDANSSKKG 60

Query: 61  VPNSNYVVPLNKSFSPANSSCITRPLAEILRDLNKRIPDNIAQKAPHSDTHDRSPTTFIP 120
           VPNSNYVVPLNKSFSPANSSCITRPLAEILRDLNKRIPDNIAQKAPHSDTHDR+P TFIP
Sbjct: 61  VPNSNYVVPLNKSFSPANSSCITRPLAEILRDLNKRIPDNIAQKAPHSDTHDRAPATFIP 120

Query: 121 WFHANRMLSFYAPGWCGEIRDVIFSDNGSVTVVYRVTVRGSDGEAHRESTGTVSATDSNI 180
           WFHANRMLSFYAPGWCGEIRDVIFSDNG VTVVYRVTVRGSDGEAHRESTGTVSATDSNI
Sbjct: 121 WFHANRMLSFYAPGWCGEIRDVIFSDNGGVTVVYRVTVRGSDGEAHRESTGTVSATDSNI 180

Query: 181 EDPVAAAEEIAFCKACARFGLGLYLYHEE 210
           EDPVAAAEEIAFCKACARFGLGLYLYHEE
Sbjct: 181 EDPVAAAEEIAFCKACARFGLGLYLYHEE 209

[Close]

BLAST of Pay0009947 vs. NCBI nr
Match: XP_022940851.1 (DNA repair RAD52-like protein 2, chloroplastic [Cucurbita moschata] >XP_022940852.1 DNA repair RAD52-like protein 2, chloroplastic [Cucurbita moschata] >XP_022940853.1 DNA repair RAD52-like protein 2, chloroplastic [Cucurbita moschata] >KAG6608636.1 DNA repair RAD52-like protein 2, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia] >KAG7037953.1 DNA repair RAD52-like protein 2, chloroplastic, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 361.3 bits (926), Expect = 5.6e-96
Identity = 185/209 (88.52%), Postives = 189/209 (90.43%), Query Frame = 0


Query: 1   MALQTYAHSQLLGPHPTALSSIHSSYSTSEIRLPLTSTTSRRPHLRLVCSSSDANSSKKG 60
           MALQTYAHSQLLGP   A S + SSYS SEIRLP  ST +RR HL LVCSSSDA S KKG
Sbjct: 1   MALQTYAHSQLLGPRLPAFSFLPSSYSVSEIRLPQISTATRR-HLHLVCSSSDA-SGKKG 60

Query: 61  VPNSNYVVPLNKSFSPANSSCITRPLAEILRDLNKRIPDNIAQKAPHSDTHDRSPTTFIP 120
           VPN+NYVVPLNKSFSPANSSCITRPLAEILRDLNKRIPDNIA K PHSD  +R P TFIP
Sbjct: 61  VPNTNYVVPLNKSFSPANSSCITRPLAEILRDLNKRIPDNIAPKVPHSDPQNRPPATFIP 120

Query: 121 WFHANRMLSFYAPGWCGEIRDVIFSDNGSVTVVYRVTVRGSDGEAHRESTGTVSATDSNI 180
           WFHANRMLSFYAPGWCGEIRDVIFSDNGSVTVVYRVTVRGSDGEAHRESTGTVSATDSNI
Sbjct: 121 WFHANRMLSFYAPGWCGEIRDVIFSDNGSVTVVYRVTVRGSDGEAHRESTGTVSATDSNI 180

Query: 181 EDPVAAAEEIAFCKACARFGLGLYLYHEE 210
           EDPVAAAEEIAFCKACARFGLGLYLYHEE
Sbjct: 181 EDPVAAAEEIAFCKACARFGLGLYLYHEE 207

[Close]

BLAST of Pay0009947 vs. NCBI nr
Match: XP_023522333.1 (DNA repair RAD52-like protein 2, chloroplastic [Cucurbita pepo subsp. pepo] >XP_023522340.1 DNA repair RAD52-like protein 2, chloroplastic [Cucurbita pepo subsp. pepo] >XP_023522347.1 DNA repair RAD52-like protein 2, chloroplastic [Cucurbita pepo subsp. pepo])

HSP 1 Score: 358.2 bits (918), Expect = 4.7e-95
Identity = 184/209 (88.04%), Postives = 188/209 (89.95%), Query Frame = 0


Query: 1   MALQTYAHSQLLGPHPTALSSIHSSYSTSEIRLPLTSTTSRRPHLRLVCSSSDANSSKKG 60
           MALQTYAHSQLLGP   A S + SSYS SEIRLP  ST +RR HL LVCSSSDA S KKG
Sbjct: 1   MALQTYAHSQLLGPRLPAFSFLPSSYSVSEIRLPQISTATRR-HLHLVCSSSDA-SGKKG 60

Query: 61  VPNSNYVVPLNKSFSPANSSCITRPLAEILRDLNKRIPDNIAQKAPHSDTHDRSPTTFIP 120
           VPN+NYVVPLNKSFSPANSSCITRPLAEILRDLNKRIPDNIA K P SD  +R P TFIP
Sbjct: 61  VPNTNYVVPLNKSFSPANSSCITRPLAEILRDLNKRIPDNIAPKVPQSDPQNRPPATFIP 120

Query: 121 WFHANRMLSFYAPGWCGEIRDVIFSDNGSVTVVYRVTVRGSDGEAHRESTGTVSATDSNI 180
           WFHANRMLSFYAPGWCGEIRDVIFSDNGSVTVVYRVTVRGSDGEAHRESTGTVSATDSNI
Sbjct: 121 WFHANRMLSFYAPGWCGEIRDVIFSDNGSVTVVYRVTVRGSDGEAHRESTGTVSATDSNI 180

Query: 181 EDPVAAAEEIAFCKACARFGLGLYLYHEE 210
           EDPVAAAEEIAFCKACARFGLGLYLYHEE
Sbjct: 181 EDPVAAAEEIAFCKACARFGLGLYLYHEE 207

[Close]

BLAST of Pay0009947 vs. TAIR 10
Match: AT5G47870.1 (FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: cobalt ion binding (TAIR:AT1G71310.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). )

HSP 1 Score: 230.7 bits (587), Expect = 1.1e-60
Identity = 120/189 (63.49%), Postives = 144/189 (76.19%), Query Frame = 0


Query: 24  SSYSTSEIRLPLTSTTSRRPHLRLVCSSSDAN----SSKKGVPNSNYVVPLNKSFSPANS 83
           SS ST+  R+ L+   +   +  + CS           KK VPNSNYVVP++K    ++S
Sbjct: 15  SSPSTAAARIKLSPFRTVAVNRGVRCSGGGVGGGDAGKKKAVPNSNYVVPIDKF---SSS 74

Query: 84  SCITRPLAEILRDLNKRIPDNIAQKAPHSDTHDRSPTTFIPWFHANRMLSFYAPGWCGEI 143
           S ITRPL EILRDLNK+IPDNI  K+    +   + + FIPW+HANRMLSFYAPGWCGE+
Sbjct: 75  SSITRPLIEILRDLNKKIPDNIV-KSHDPPSTSAATSGFIPWYHANRMLSFYAPGWCGEV 134

Query: 144 RDVIFSDNGSVTVVYRVTVRGSDGEAHRESTGTVSATDSNIEDPVAAAEEIAFCKACARF 203
           RDVIFS+NG+VTVVYR+T+RGSDGEAHRESTGTV+ TD +IEDPV AAEEIAFC+ACARF
Sbjct: 135 RDVIFSENGNVTVVYRLTIRGSDGEAHRESTGTVTTTDDHIEDPVTAAEEIAFCRACARF 194

Query: 204 GLGLYLYHE 209
           GLGLYLYHE
Sbjct: 195 GLGLYLYHE 199

[Close]

BLAST of Pay0009947 vs. TAIR 10
Match: AT1G71310.2 (cobalt ion binding )

HSP 1 Score: 132.5 bits (332), Expect = 3.9e-31
Identity = 66/132 (50.00%), Postives = 90/132 (68.18%), Query Frame = 0


Query: 79  SSCITRPLAEILRDLNKRIPDNIAQKAPHSDTHDRSPTTFIPWFHANRMLSFYAPGWCGE 138
           +S I+RPLAEIL++LNK++PD++ +    +   D     +IPW   NR+++ +AP W GE
Sbjct: 47  TSGISRPLAEILKELNKKVPDSVIR----TRVEDGCSIKYIPWHIVNRIMNMHAPEWSGE 106

Query: 139 IRDVIFS-DNGSVTVVYRVTVRGSDGEAHRESTGTVSATDSNIEDPVAAAEEIAFCKACA 198
           +R V +S D  +VTV YRVT+ G+D E  RESTGT S  D    D V  AE +AF +ACA
Sbjct: 107 VRSVTYSPDGNTVTVAYRVTLYGTDAEIFRESTGTTSVDDKGYGDAVQKAEAMAFRRACA 166

Query: 199 RFGLGLYLYHEE 210
           RFGLGL+LYHE+
Sbjct: 167 RFGLGLHLYHED 174

[Close]

BLAST of Pay0009947 vs. TAIR 10
Match: AT1G71310.1 (cobalt ion binding )

HSP 1 Score: 132.5 bits (332), Expect = 3.9e-31
Identity = 66/132 (50.00%), Postives = 90/132 (68.18%), Query Frame = 0


Query: 79  SSCITRPLAEILRDLNKRIPDNIAQKAPHSDTHDRSPTTFIPWFHANRMLSFYAPGWCGE 138
           +S I+RPLAEIL++LNK++PD++ +    +   D     +IPW   NR+++ +AP W GE
Sbjct: 47  TSGISRPLAEILKELNKKVPDSVIR----TRVEDGCSIKYIPWHIVNRIMNMHAPEWSGE 106

Query: 139 IRDVIFS-DNGSVTVVYRVTVRGSDGEAHRESTGTVSATDSNIEDPVAAAEEIAFCKACA 198
           +R V +S D  +VTV YRVT+ G+D E  RESTGT S  D    D V  AE +AF +ACA
Sbjct: 107 VRSVTYSPDGNTVTVAYRVTLYGTDAEIFRESTGTTSVDDKGYGDAVQKAEAMAFRRACA 166

Query: 199 RFGLGLYLYHEE 210
           RFGLGL+LYHE+
Sbjct: 167 RFGLGLHLYHED 174

[Close]

BLAST of Pay0009947 vs. TAIR 10
Match: AT1G71310.3 (cobalt ion binding )

HSP 1 Score: 82.0 bits (201), Expect = 6.1e-16
Identity = 39/87 (44.83%), Postives = 59/87 (67.82%), Query Frame = 0


Query: 79  SSCITRPLAEILRDLNKRIPDNIAQKAPHSDTHDRSPTTFIPWFHANRMLSFYAPGWCGE 138
           +S I+RPLAEIL++LNK++PD++ +    +   D     +IPW   NR+++ +AP W GE
Sbjct: 47  TSGISRPLAEILKELNKKVPDSVIR----TRVEDGCSIKYIPWHIVNRIMNMHAPEWSGE 106

Query: 139 IRDVIFS-DNGSVTVVYRVTVRGSDGE 165
           +R V +S D  +VTV YRVT+ G+D E
Sbjct: 107 VRSVTYSPDGNTVTVAYRVTLYGTDAE 129

The following BLAST results are available for this feature:

BLAST of Pay0009947 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9FIJ4	1.5e-59	63.49	DNA repair RAD52-like protein 2, chloroplastic OS=Arabidopsis thaliana OX=3702 G...	[more]
Q9FVV7	5.6e-30	50.00	DNA repair RAD52-like protein 1, mitochondrial OS=Arabidopsis thaliana OX=3702 G...	[more]

BLAST of Pay0009947 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S4DZ99	3.8e-114	99.52	uncharacterized protein LOC103493818 OS=Cucumis melo OX=3656 GN=LOC103493818 PE=...	[more]
A0A5A7VFI5	3.8e-114	99.52	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A0A0L5X0	1.1e-108	96.65	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G663650 PE=4 SV=1	[more]
A0A6J1FJJ9	2.7e-96	88.52	DNA repair RAD52-like protein 2, chloroplastic OS=Cucurbita moschata OX=3662 GN=...	[more]
A0A6J1J3T8	4.3e-94	86.60	DNA repair RAD52-like protein 2, chloroplastic OS=Cucurbita maxima OX=3661 GN=LO...	[more]

BLAST of Pay0009947 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008452970.1	7.8e-114	99.52	PREDICTED: uncharacterized protein LOC103493818 [Cucumis melo] >XP_016901316.1 P...	[more]
XP_004145544.1	2.2e-108	96.65	DNA repair RAD52-like protein 2, chloroplastic [Cucumis sativus] >XP_031740574.1...	[more]
XP_038897318.1	1.2e-103	92.34	DNA repair RAD52-like protein 2, chloroplastic [Benincasa hispida]	[more]
XP_022940851.1	5.6e-96	88.52	DNA repair RAD52-like protein 2, chloroplastic [Cucurbita moschata] >XP_02294085...	[more]
XP_023522333.1	4.7e-95	88.04	DNA repair RAD52-like protein 2, chloroplastic [Cucurbita pepo subsp. pepo] >XP_...	[more]

BLAST of Pay0009947 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G47870.1	1.1e-60	63.49	FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknow...	[more]
AT1G71310.2	3.9e-31	50.00	cobalt ion binding	[more]
AT1G71310.1	3.9e-31	50.00	cobalt ion binding	[more]
AT1G71310.3	6.1e-16	44.83	cobalt ion binding	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (Payzawat) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR34050:SF3	DNA REPAIR RAD52-LIKE PROTEIN 2, CHLOROPLASTIC	coord: 50..209
IPR037489	DNA repair RAD52-like protein	PANTHER	PTHR34050	FAMILY NOT NAMED	coord: 50..209

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Pay0009947.1	Pay0009947.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0000724	double-strand break repair via homologous recombination
molecular_function	GO:0003677	DNA binding