Pay0009651 (gene) Melon (Payzawat) v1

Overview


Name	Pay0009651
Type	gene
Organism	Cucumis melo L. var. inodorus cv. Payzawat (Melon (Payzawat) v1)
Description	Ty3-gypsy retrotransposon protein
Location	chr11: 19483073 .. 19484408 (+)
RNA-Seq Expression	Pay0009651
Synteny	Pay0009651

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexonpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTATGAGATAGTGAGACTACATGGAGTGTCAGTGTCGATTGTTTCTAATAGAGATGCCCGTTTCACTTCTAAGTTCTGGAAAGGACTTCAGCTTGCTATGGGCACGAGGTTAGATTTTAGTACAACTTTCCACCGACAGACTGATGGTAAGATTGAGTGTCTGAACCAAGTTTTAGAGGATATGTTGGGAGCGTGTGCATTGGAATTCCCAGGTAGTTTGGGATTCTCACTGCATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTATTTGATGGAATTTGCTTATAATAACAGTTTTCAGGCTATCATTGGCATGGCACCATTTGAGGCCTTGTAGGGCAAATATTGTAGATCCCCTGTTTGCTGGGATGAGGTTAGTGGGCAGAGATTGATGGGTCCTGAGTTAGTTCAGTCTACTAACGAAGCGATACAGAAAATTAGATCACGTACGCAGACCGCACAGAGTAGACAAAAGAGTTATGCCGATGGGAGACGAAAGGATCTTGATCAAGTTTAATGTAGGGGACAAGGTGTTCTTGAAAGTAGCATCTATGAAAGGTGTTCTACGATTTGAAAGGAGAGGAAAGCCGAGTTCCCGTTTTGTTGGGCCGTTTGAGATTCTAGAGCGAATTGGCCCTATGGCCTATCGCTTAGCGTTGTCGCCATCACTCTCGACAGTTCATGACGTGTTCCATGTTTCTATGTTGAGGAAGTATGTGATAGATCCATCCCATGTAGTGAATTACGAGCCATTAAAGATCGATGAAAATTTGAGCTATACAGAACAACCAATTGAGGTGTTGGCTAGAAAGGTGAAGATTTTGAGGAATAGAGAAATTTCTTTGGTTAAAGTCTTATGGTGGAATCACAACGTTGAGGAGGTTACATGGGAGAGAGAAGATGACATGAGAGCTCGTTATCCAGAGTTGTTCGAGGAATAG

mRNA sequence

ATGTATGAGATAGTGAGACTACATGGAGTGTCAGTGTCGATTGTTTCTAATAGAGATGCCCGTTTCACTTCTAAGTTCTGGAAAGGACTTCAGCTTGCTATGGGCACGAGGTTAGATTTTAAGCGAATTGGCCCTATGGCCTATCGCTTAGCGTTGTCGCCATCACTCTCGACAGTTCATGACGTGTTCCATGTTTCTATGTTGAGGAAGTATGTGATAGATCCATCCCATGTAGTGAATTACGAGCCATTAAAGATCGATGAAAATTTGAGCTATACAGAACAACCAATTGAGGTGTTGGCTAGAAAGGTGAAGATTTTGAGGAATAGAGAAATTTCTTTGGTTAAAGTCTTATGGTGGAATCACAACGTTGAGGAGGTTACATGGGAGAGAGAAGATGACATGAGAGCTCGTTATCCAGAGTTGTTCGAGGAATAG

Coding sequence (CDS)

ATGTATGAGATAGTGAGACTACATGGAGTGTCAGTGTCGATTGTTTCTAATAGAGATGCCCGTTTCACTTCTAAGTTCTGGAAAGGACTTCAGCTTGCTATGGGCACGAGGTTAGATTTTAAGCGAATTGGCCCTATGGCCTATCGCTTAGCGTTGTCGCCATCACTCTCGACAGTTCATGACGTGTTCCATGTTTCTATGTTGAGGAAGTATGTGATAGATCCATCCCATGTAGTGAATTACGAGCCATTAAAGATCGATGAAAATTTGAGCTATACAGAACAACCAATTGAGGTGTTGGCTAGAAAGGTGAAGATTTTGAGGAATAGAGAAATTTCTTTGGTTAAAGTCTTATGGTGGAATCACAACGTTGAGGAGGTTACATGGGAGAGAGAAGATGACATGAGAGCTCGTTATCCAGAGTTGTTCGAGGAATAG

Protein sequence

MYEIVRLHGVSVSIVSNRDARFTSKFWKGLQLAMGTRLDFKRIGPMAYRLALSPSLSTVHDVFHVSMLRKYVIDPSHVVNYEPLKIDENLSYTEQPIEVLARKVKILRNREISLVKVLWWNHNVEEVTWEREDDMRARYPELFEE

Homology

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BLAST of Pay0009651 vs. ExPASy TrEMBL
Match: A0A1S4DV44 (uncharacterized protein LOC107990689 OS=Cucumis melo OX=3656 GN=LOC107990689 PE=4 SV=1)

HSP 1 Score: 229.9 bits (585), Expect = 6.5e-57
Identity = 115/145 (79.31%), Postives = 128/145 (88.28%), Query Frame = 0


Query: 1   MYEIVRLHGVSVSIVSNRDARFTSKFWKGLQLAMGTRLDFKRIGPMAYRLALSPSLSTVH 60
           M EIVRLH V VSIVSN+DARFTSKFWKGLQ AM      +RIGP+AYRLALSPSLS VH
Sbjct: 1   MSEIVRLHRVLVSIVSNKDARFTSKFWKGLQAAM------ERIGPVAYRLALSPSLSIVH 60

Query: 61  DVFHVSMLRKYVIDPSHVVNYEPLKIDENLSYTEQPIEVLARKVKILRNREISLVKVLWW 120
           DVFHVSMLRKY+ DPSHVV+YEPL+ID+NLSY+E+ +EVLAR+VK+LRNREISLVKVLWW
Sbjct: 61  DVFHVSMLRKYMTDPSHVVDYEPLEIDKNLSYSEKLVEVLAREVKMLRNREISLVKVLWW 120

Query: 121 NHNVEEVTWEREDDMRARYPELFEE 146
           NH  +E TWERED MRARYPELFEE
Sbjct: 121 NHKAKEATWEREDGMRARYPELFEE 139

[Close]

BLAST of Pay0009651 vs. ExPASy TrEMBL
Match: A0A5D3C850 (Pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1702G00280 PE=4 SV=1)

HSP 1 Score: 216.5 bits (550), Expect = 7.5e-53
Identity = 122/207 (58.94%), Postives = 131/207 (63.29%), Query Frame = 0


Query: 1   MYEIVRLHGVSVSIVSNRDARFTSKFWKGLQLAMGTRLD--------------------- 60
           M EIVRLHGV VSIVS+RDARFTSKFWKGLQ  MGTR                       
Sbjct: 427 MSEIVRLHGVPVSIVSHRDARFTSKFWKGLQATMGTRSPVCWGEVGEQRLMGPELVQSTN 486

Query: 61  -----------------------------------------FKRIGPMAYRLALSPSLST 120
                                                     +RIGP+AYRLAL PSLST
Sbjct: 487 EAVQKISSRDKVFLKVAPMKGVLRLERRGKRSPRFVEPFEILERIGPVAYRLALPPSLST 546

Query: 121 VHDVFHVSMLRKYVIDPSHVVNYEPLKIDENLSYTEQPIEVLARKVKILRNREISLVKVL 146
           VHDVFHVSMLRKYV DPSHVV+YEPL+IDENLSYTEQ +EVLAR+VK+LRNREI LVKVL
Sbjct: 547 VHDVFHVSMLRKYVPDPSHVVDYEPLEIDENLSYTEQLVEVLAREVKMLRNREIPLVKVL 606

[Close]

BLAST of Pay0009651 vs. ExPASy TrEMBL
Match: A0A5A7TRS6 (Pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold157G00260 PE=4 SV=1)

HSP 1 Score: 214.9 bits (546), Expect = 2.2e-52
Identity = 116/192 (60.42%), Postives = 129/192 (67.19%), Query Frame = 0


Query: 1   MYEIVRLHGVSVSIVSNRDARFTSKFWKGLQLAMGTRLDF-------------------- 60
           M E+VRLHGV VSIVS+RDARFTSKFWKGLQ AMGTRLDF                    
Sbjct: 135 MSEMVRLHGVLVSIVSDRDARFTSKFWKGLQAAMGTRLDFSTTFHPQTDVFGLPLTWHHS 194

Query: 61  -----------------------------KRIGPMAYRLALSPSLSTVHDVFHVSMLRKY 120
                                        +RI P+AYRLAL PSLS VHDVFHVSMLRK 
Sbjct: 195 RPCTENVVDPLFAGRGKLSPRFVGPFEILERISPVAYRLALPPSLSKVHDVFHVSMLRKN 254

Query: 121 VIDPSHVVNYEPLKIDENLSYTEQPIEVLARKVKILRNREISLVKVLWWNHNVEEVTWER 144
           V DPSHVV+YEPL+IDENLSYTEQP+EVLAR+VK+ RNREI LVKVLW NH VE+ TWER
Sbjct: 255 VPDPSHVVDYEPLEIDENLSYTEQPVEVLAREVKMSRNREIPLVKVLWRNHRVEKATWER 314

[Close]

BLAST of Pay0009651 vs. ExPASy TrEMBL
Match: A0A5A7SSY8 (Pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold4060G00080 PE=4 SV=1)

HSP 1 Score: 211.5 bits (537), Expect = 2.4e-51
Identity = 124/243 (51.03%), Postives = 135/243 (55.56%), Query Frame = 0


Query: 1   MYEIVRLHGVSVSIVSNRDARFTSKFWKGLQLAMGTRLDF-------------------- 60
           M EIVRLHGVSVSI  +RDARFTSKFWKGLQ AMGTRLDF                    
Sbjct: 645 MSEIVRLHGVSVSIAFDRDARFTSKFWKGLQTAMGTRLDFSTAFHPQIDGQTERLNQFQA 704

Query: 61  ------------------------------------------------------------ 120
                                                                       
Sbjct: 705 TIGMTPFEALYDKCCRSPVCWGETAQSRQKSYADVRRKDLEFDVGDKVFLKVAPMKGVLR 764

Query: 121 ------------------KRIGPMAYRLALSPSLSTVHDVFHVSMLRKYVIDPSHVVNYE 146
                             +RI P+AYRLAL PSLSTVHDVFHVSMLRKYV DPSHVV+YE
Sbjct: 765 FERRGKLSPRFVGPFEILERISPVAYRLALPPSLSTVHDVFHVSMLRKYVPDPSHVVDYE 824

[Close]

BLAST of Pay0009651 vs. ExPASy TrEMBL
Match: A0A5A7SZ74 (Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold191G001000 PE=4 SV=1)

HSP 1 Score: 211.5 bits (537), Expect = 2.4e-51
Identity = 119/203 (58.62%), Postives = 131/203 (64.53%), Query Frame = 0


Query: 1   MYEIVRLHGVSVSIVSNRDARFTSKFWKGLQLAMGTRLD--------------------- 60
           M  IVRLHGV VSIVS++DARFTSKFWKGLQ AMGTR                       
Sbjct: 477 MSGIVRLHGVPVSIVSDKDARFTSKFWKGLQTAMGTRSPVCWGEVGEQRLMGSKLVQSTN 536

Query: 61  ------------------------------------FKRIGPM-AYRLALSPSLSTVHDV 120
                                               F ++ PM AYRLAL PSLSTVHDV
Sbjct: 537 EAIQKIRSRMHTAQSRQKSYADVRRKDLEFDVGDKVFLKVAPMRAYRLALPPSLSTVHDV 596

Query: 121 FHVSMLRKYVIDPSHVVNYEPLKIDENLSYTEQPIEVLARKVKILRNREISLVKVLWWNH 146
           FHVSMLRKYV DPSHVV+YEPL+IDENLSYTEQP+EVLA++VK+LRNREI LVKVLW N+
Sbjct: 597 FHVSMLRKYVPDPSHVVDYEPLEIDENLSYTEQPVEVLAKEVKMLRNREIPLVKVLWRNY 656

[Close]

BLAST of Pay0009651 vs. NCBI nr
Match: XP_016899856.1 (PREDICTED: uncharacterized protein LOC107990689 [Cucumis melo])

HSP 1 Score: 229.9 bits (585), Expect = 1.4e-56
Identity = 115/145 (79.31%), Postives = 128/145 (88.28%), Query Frame = 0


Query: 1   MYEIVRLHGVSVSIVSNRDARFTSKFWKGLQLAMGTRLDFKRIGPMAYRLALSPSLSTVH 60
           M EIVRLH V VSIVSN+DARFTSKFWKGLQ AM      +RIGP+AYRLALSPSLS VH
Sbjct: 1   MSEIVRLHRVLVSIVSNKDARFTSKFWKGLQAAM------ERIGPVAYRLALSPSLSIVH 60

Query: 61  DVFHVSMLRKYVIDPSHVVNYEPLKIDENLSYTEQPIEVLARKVKILRNREISLVKVLWW 120
           DVFHVSMLRKY+ DPSHVV+YEPL+ID+NLSY+E+ +EVLAR+VK+LRNREISLVKVLWW
Sbjct: 61  DVFHVSMLRKYMTDPSHVVDYEPLEIDKNLSYSEKLVEVLAREVKMLRNREISLVKVLWW 120

Query: 121 NHNVEEVTWEREDDMRARYPELFEE 146
           NH  +E TWERED MRARYPELFEE
Sbjct: 121 NHKAKEATWEREDGMRARYPELFEE 139

[Close]

BLAST of Pay0009651 vs. NCBI nr
Match: KAA0033210.1 (pol protein [Cucumis melo var. makuwa] >TYK07510.1 pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 216.5 bits (550), Expect = 1.5e-52
Identity = 122/207 (58.94%), Postives = 131/207 (63.29%), Query Frame = 0


Query: 1   MYEIVRLHGVSVSIVSNRDARFTSKFWKGLQLAMGTRLD--------------------- 60
           M EIVRLHGV VSIVS+RDARFTSKFWKGLQ  MGTR                       
Sbjct: 427 MSEIVRLHGVPVSIVSHRDARFTSKFWKGLQATMGTRSPVCWGEVGEQRLMGPELVQSTN 486

Query: 61  -----------------------------------------FKRIGPMAYRLALSPSLST 120
                                                     +RIGP+AYRLAL PSLST
Sbjct: 487 EAVQKISSRDKVFLKVAPMKGVLRLERRGKRSPRFVEPFEILERIGPVAYRLALPPSLST 546

Query: 121 VHDVFHVSMLRKYVIDPSHVVNYEPLKIDENLSYTEQPIEVLARKVKILRNREISLVKVL 146
           VHDVFHVSMLRKYV DPSHVV+YEPL+IDENLSYTEQ +EVLAR+VK+LRNREI LVKVL
Sbjct: 547 VHDVFHVSMLRKYVPDPSHVVDYEPLEIDENLSYTEQLVEVLAREVKMLRNREIPLVKVL 606

[Close]

BLAST of Pay0009651 vs. NCBI nr
Match: KAA0046102.1 (pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 214.9 bits (546), Expect = 4.5e-52
Identity = 116/192 (60.42%), Postives = 129/192 (67.19%), Query Frame = 0


Query: 1   MYEIVRLHGVSVSIVSNRDARFTSKFWKGLQLAMGTRLDF-------------------- 60
           M E+VRLHGV VSIVS+RDARFTSKFWKGLQ AMGTRLDF                    
Sbjct: 135 MSEMVRLHGVLVSIVSDRDARFTSKFWKGLQAAMGTRLDFSTTFHPQTDVFGLPLTWHHS 194

Query: 61  -----------------------------KRIGPMAYRLALSPSLSTVHDVFHVSMLRKY 120
                                        +RI P+AYRLAL PSLS VHDVFHVSMLRK 
Sbjct: 195 RPCTENVVDPLFAGRGKLSPRFVGPFEILERISPVAYRLALPPSLSKVHDVFHVSMLRKN 254

Query: 121 VIDPSHVVNYEPLKIDENLSYTEQPIEVLARKVKILRNREISLVKVLWWNHNVEEVTWER 144
           V DPSHVV+YEPL+IDENLSYTEQP+EVLAR+VK+ RNREI LVKVLW NH VE+ TWER
Sbjct: 255 VPDPSHVVDYEPLEIDENLSYTEQPVEVLAREVKMSRNREIPLVKVLWRNHRVEKATWER 314

[Close]

BLAST of Pay0009651 vs. NCBI nr
Match: KAA0036584.1 (ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 211.5 bits (537), Expect = 5.0e-51
Identity = 119/203 (58.62%), Postives = 131/203 (64.53%), Query Frame = 0


Query: 1   MYEIVRLHGVSVSIVSNRDARFTSKFWKGLQLAMGTRLD--------------------- 60
           M  IVRLHGV VSIVS++DARFTSKFWKGLQ AMGTR                       
Sbjct: 477 MSGIVRLHGVPVSIVSDKDARFTSKFWKGLQTAMGTRSPVCWGEVGEQRLMGSKLVQSTN 536

Query: 61  ------------------------------------FKRIGPM-AYRLALSPSLSTVHDV 120
                                               F ++ PM AYRLAL PSLSTVHDV
Sbjct: 537 EAIQKIRSRMHTAQSRQKSYADVRRKDLEFDVGDKVFLKVAPMRAYRLALPPSLSTVHDV 596

Query: 121 FHVSMLRKYVIDPSHVVNYEPLKIDENLSYTEQPIEVLARKVKILRNREISLVKVLWWNH 146
           FHVSMLRKYV DPSHVV+YEPL+IDENLSYTEQP+EVLA++VK+LRNREI LVKVLW N+
Sbjct: 597 FHVSMLRKYVPDPSHVVDYEPLEIDENLSYTEQPVEVLAKEVKMLRNREIPLVKVLWRNY 656

[Close]

BLAST of Pay0009651 vs. NCBI nr
Match: KAA0032467.1 (pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 211.5 bits (537), Expect = 5.0e-51
Identity = 124/243 (51.03%), Postives = 135/243 (55.56%), Query Frame = 0


Query: 1   MYEIVRLHGVSVSIVSNRDARFTSKFWKGLQLAMGTRLDF-------------------- 60
           M EIVRLHGVSVSI  +RDARFTSKFWKGLQ AMGTRLDF                    
Sbjct: 645 MSEIVRLHGVSVSIAFDRDARFTSKFWKGLQTAMGTRLDFSTAFHPQIDGQTERLNQFQA 704

Query: 61  ------------------------------------------------------------ 120
                                                                       
Sbjct: 705 TIGMTPFEALYDKCCRSPVCWGETAQSRQKSYADVRRKDLEFDVGDKVFLKVAPMKGVLR 764

Query: 121 ------------------KRIGPMAYRLALSPSLSTVHDVFHVSMLRKYVIDPSHVVNYE 146
                             +RI P+AYRLAL PSLSTVHDVFHVSMLRKYV DPSHVV+YE
Sbjct: 765 FERRGKLSPRFVGPFEILERISPVAYRLALPPSLSTVHDVFHVSMLRKYVPDPSHVVDYE 824

The following BLAST results are available for this feature:

BLAST of Pay0009651 vs.


Match Name	E-value	Identity	Description

BLAST of Pay0009651 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S4DV44	6.5e-57	79.31	uncharacterized protein LOC107990689 OS=Cucumis melo OX=3656 GN=LOC107990689 PE=...	[more]
A0A5D3C850	7.5e-53	58.94	Pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1702G00280 P...	[more]
A0A5A7TRS6	2.2e-52	60.42	Pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold157G00260 PE...	[more]
A0A5A7SSY8	2.4e-51	51.03	Pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold4060G00080 P...	[more]
A0A5A7SZ74	2.4e-51	58.62	Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C2...	[more]

BLAST of Pay0009651 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_016899856.1	1.4e-56	79.31	PREDICTED: uncharacterized protein LOC107990689 [Cucumis melo]	[more]
KAA0033210.1	1.5e-52	58.94	pol protein [Cucumis melo var. makuwa] >TYK07510.1 pol protein [Cucumis melo var...	[more]
KAA0046102.1	4.5e-52	60.42	pol protein [Cucumis melo var. makuwa]	[more]
KAA0036584.1	5.0e-51	58.62	ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]	[more]
KAA0032467.1	5.0e-51	51.03	pol protein [Cucumis melo var. makuwa]	[more]

BLAST of Pay0009651 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (Payzawat) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR46148:SF33	OS05G0296332 PROTEIN	coord: 23..143
None	No IPR available	PANTHER	PTHR46148	FAMILY NOT NAMED	coord: 23..143

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Pay0009651.1	Pay0009651.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006259	DNA metabolic process
molecular_function	GO:0005488	binding
molecular_function	GO:0004518	nuclease activity
molecular_function	GO:0016779	nucleotidyltransferase activity