Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCAAGTTCGTCACGAGCACTAAAACATACATGGACTAAAGAGGAAGAAGCAAAACTTGTTGACTGCTTGGTGGAATTGGTTTCATCTGGAGGATGGAGGTCCGATAATGGGACATTTCGACCTGGGTACCTGGCCCAATTGCAACGAATGATGGCAGAGAAGTTGTCCGACACTAATGTCCAAGGATCACCAACAATAGATTGTCGTGTGAAATCTCTTAAAAAAATCTACCATGCAATTGTAGAAATGAGGGGGCCATCATGTAGTGCCTTTGGATGGAATGAAGAATTCCAATGCATCATCGCAGAACGGGATTTGTTTGATAGTTAGGTTAAGGAATTAATTTCATAATGCAATTATACGTATTTTTTATAATCACAATCATCAACTAATCTCCTTAAATTACATTTGTACAGAGTTATCCTACAGTCAAAGGCCTTCTACACAAATCATTTCCATATTATAATGATATGTCTTATGTCTTTGGCAAAGATCGGACAATGGGAGCACGTTCAGAGACCTTTGCTGATGTAGGATCTAATGTGCCGAACATGTTTAATGACACAGTTCCCCTTGGTGATTCACATGATGAAGACATCCCGACGATGTATAGCCAAGGAGTGCATATGTCACCAGATGAGATGTTTAGAATACGTGCAGGTCAAGCAAGTGATAGAAGAAATTGTACAAGTGGAAGTAAGAGGAAACGAGGTAGCGAACGTTATGAAACGATAGAGGTGATCATGCGTGTAATGGAATTTGGAAATGAGCAATTAAAGGCAATTGCAGATTGGCCAAAAGAGAAGCGTGCAATAGGGGTCGAAATGCGTGCTCAAGTTGTGAAACAACTGCAAGATATCCCTGAACTACGAAGCCAAGATAGGGCAAAGCTTATGCAAATCCTATTCCGTAGTTTGGAGGTCATTGAGGGATTCTTGTCAATTCCAACAAAACTTAAATTGGAGTATTGCAATATTCTCTTGCAAAATAATGTTTGA
mRNA sequence
ATGGCAAGTTCGTCACGAGCACTAAAACATACATGGACTAAAGAGGAAGAAGCAAAACTTGTTGACTGCTTGGTGGAATTGGTTTCATCTGGAGGATGGAGGTCCGATAATGGGACATTTCGACCTGGGTACCTGGCCCAATTGCAACGAATGATGGCAGAGAAGTTGTCCGACACTAATGTCCAAGGATCACCAACAATAGATTGTCGTGTGAAATCTCTTAAAAAAATCTACCATGCAATTGTAGAAATGAGGGGGCCATCATGTAGTGCCTTTGGATGGAATGAAGAATTCCAATGCATCATCGCAGAACGGGATTTGTTTGATATCAAAGGCCTTCTACACAAATCATTTCCATATTATAATGATATGTCTTATGTCTTTGGCAAAGATCGGACAATGGGAGCACGTTCAGAGACCTTTGCTGATGTAGGATCTAATGTGCCGAACATGTTTAATGACACAGTTCCCCTTGGTGATTCACATGATGAAGACATCCCGACGATGTATAGCCAAGGAGTGCATATGTCACCAGATGAGATGTTTAGAATACGTGCAGGTCAAGCAAGTGATAGAAGAAATTGTACAAGTGGAAGTAAGAGGAAACGAGGTAGCGAACGTTATGAAACGATAGAGGTGATCATGCGTGTAATGGAATTTGGAAATGAGCAATTAAAGGCAATTGCAGATTGGCCAAAAGAGAAGCGTGCAATAGGGGTCGAAATGCGTGCTCAAGTTGTGAAACAACTGCAAGATATCCCTGAACTACGAAGCCAAGATAGGGCAAAGCTTATGCAAATCCTATTCCGTAGTTTGGAGGTCATTGAGGGATTCTTGTCAATTCCAACAAAACTTAAATTGGAGTATTGCAATATTCTCTTGCAAAATAATGTTTGA
Coding sequence (CDS)
ATGGCAAGTTCGTCACGAGCACTAAAACATACATGGACTAAAGAGGAAGAAGCAAAACTTGTTGACTGCTTGGTGGAATTGGTTTCATCTGGAGGATGGAGGTCCGATAATGGGACATTTCGACCTGGGTACCTGGCCCAATTGCAACGAATGATGGCAGAGAAGTTGTCCGACACTAATGTCCAAGGATCACCAACAATAGATTGTCGTGTGAAATCTCTTAAAAAAATCTACCATGCAATTGTAGAAATGAGGGGGCCATCATGTAGTGCCTTTGGATGGAATGAAGAATTCCAATGCATCATCGCAGAACGGGATTTGTTTGATATCAAAGGCCTTCTACACAAATCATTTCCATATTATAATGATATGTCTTATGTCTTTGGCAAAGATCGGACAATGGGAGCACGTTCAGAGACCTTTGCTGATGTAGGATCTAATGTGCCGAACATGTTTAATGACACAGTTCCCCTTGGTGATTCACATGATGAAGACATCCCGACGATGTATAGCCAAGGAGTGCATATGTCACCAGATGAGATGTTTAGAATACGTGCAGGTCAAGCAAGTGATAGAAGAAATTGTACAAGTGGAAGTAAGAGGAAACGAGGTAGCGAACGTTATGAAACGATAGAGGTGATCATGCGTGTAATGGAATTTGGAAATGAGCAATTAAAGGCAATTGCAGATTGGCCAAAAGAGAAGCGTGCAATAGGGGTCGAAATGCGTGCTCAAGTTGTGAAACAACTGCAAGATATCCCTGAACTACGAAGCCAAGATAGGGCAAAGCTTATGCAAATCCTATTCCGTAGTTTGGAGGTCATTGAGGGATTCTTGTCAATTCCAACAAAACTTAAATTGGAGTATTGCAATATTCTCTTGCAAAATAATGTTTGA
Protein sequence
MASSSRALKHTWTKEEEAKLVDCLVELVSSGGWRSDNGTFRPGYLAQLQRMMAEKLSDTNVQGSPTIDCRVKSLKKIYHAIVEMRGPSCSAFGWNEEFQCIIAERDLFDIKGLLHKSFPYYNDMSYVFGKDRTMGARSETFADVGSNVPNMFNDTVPLGDSHDEDIPTMYSQGVHMSPDEMFRIRAGQASDRRNCTSGSKRKRGSERYETIEVIMRVMEFGNEQLKAIADWPKEKRAIGVEMRAQVVKQLQDIPELRSQDRAKLMQILFRSLEVIEGFLSIPTKLKLEYCNILLQNNV
Homology
BLAST of Pay0009598 vs. ExPASy TrEMBL
Match:
A0A5A7U0H7 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold648G002060 PE=4 SV=1)
HSP 1 Score: 524.2 bits (1349), Expect = 3.5e-145
Identity = 261/306 (85.29%), Postives = 274/306 (89.54%), Query Frame = 0
Query: 1 MASSSRALKHTWTKEEEAKLVDCLVELVSSGGWRSDNGTFRPGYLAQLQRMMAEKLSDTN 60
MAS SRA KHTWTKEEE K V+CLVELVSSGGWRSDNGTF+PGYLAQLQRMMAEKL TN
Sbjct: 1 MASLSRAPKHTWTKEEEEKFVECLVELVSSGGWRSDNGTFQPGYLAQLQRMMAEKLPGTN 60
Query: 61 VQGSPTIDCRVKSLKKIYHAIVEMRGPSCSAFGWNEEFQCIIAERDLFD--------IKG 120
+Q S TIDC VKSLKK YHAI EMRGPSCS FGWNEEFQCIIAERDLFD KG
Sbjct: 61 IQESSTIDCHVKSLKKTYHAIAEMRGPSCSGFGWNEEFQCIIAERDLFDSWIKSHPAAKG 120
Query: 121 LLHKSFPYYNDMSYVFGKDRTMGARSETFADVGSNVPNMFNDTVPLGDSHDEDIPTMYSQ 180
LLHKSFPYY+D+SYVFGKDR GARSETF +VGSNV NMFNDT+PLGDSHDEDIPTMYSQ
Sbjct: 121 LLHKSFPYYDDLSYVFGKDRATGARSETFPNVGSNVSNMFNDTIPLGDSHDEDIPTMYSQ 180
Query: 181 GVHMSPDEMFRIRAGQASDRRNCTSGSKRKRGSERYETIEVIMRVMEFGNEQLKAIADWP 240
GVHMSPDEMF IRAGQAS+RRNC+S SKRKRGSERYET+EVI VMEFGNEQLKAIADWP
Sbjct: 181 GVHMSPDEMFGIRAGQASERRNCSSVSKRKRGSERYETVEVIRSVMEFGNEQLKAIADWP 240
Query: 241 KEKRAIGVEMRAQVVKQLQDIPELRSQDRAKLMQILFRSLEVIEGFLSIPTKLKLEYCNI 299
KEKRA+ VEMRAQVVKQLQDIP+LRSQDRAKLMQILFRSLE IEGFLSIPT+LKLEYCNI
Sbjct: 241 KEKRAMEVEMRAQVVKQLQDIPKLRSQDRAKLMQILFRSLEAIEGFLSIPTELKLEYCNI 300
BLAST of Pay0009598 vs. ExPASy TrEMBL
Match:
A0A1S3B4L3 (uncharacterized protein LOC103485953 OS=Cucumis melo OX=3656 GN=LOC103485953 PE=4 SV=1)
HSP 1 Score: 524.2 bits (1349), Expect = 3.5e-145
Identity = 261/306 (85.29%), Postives = 274/306 (89.54%), Query Frame = 0
Query: 1 MASSSRALKHTWTKEEEAKLVDCLVELVSSGGWRSDNGTFRPGYLAQLQRMMAEKLSDTN 60
MAS SRA KHTWTKEEE K V+CLVELVSSGGWRSDNGTF+PGYLAQLQRMMAEKL TN
Sbjct: 1 MASLSRAPKHTWTKEEEEKFVECLVELVSSGGWRSDNGTFQPGYLAQLQRMMAEKLPGTN 60
Query: 61 VQGSPTIDCRVKSLKKIYHAIVEMRGPSCSAFGWNEEFQCIIAERDLFD--------IKG 120
+Q S TIDC VKSLKK YHAI EMRGPSCS FGWNEEFQCIIAERDLFD KG
Sbjct: 61 IQESSTIDCHVKSLKKTYHAIAEMRGPSCSGFGWNEEFQCIIAERDLFDSWIKSHPAAKG 120
Query: 121 LLHKSFPYYNDMSYVFGKDRTMGARSETFADVGSNVPNMFNDTVPLGDSHDEDIPTMYSQ 180
LLHKSFPYY+D+SYVFGKDR GARSETF +VGSNV NMFNDT+PLGDSHDEDIPTMYSQ
Sbjct: 121 LLHKSFPYYDDLSYVFGKDRATGARSETFPNVGSNVSNMFNDTIPLGDSHDEDIPTMYSQ 180
Query: 181 GVHMSPDEMFRIRAGQASDRRNCTSGSKRKRGSERYETIEVIMRVMEFGNEQLKAIADWP 240
GVHMSPDEMF IRAGQAS+RRNC+S SKRKRGSERYET+EVI VMEFGNEQLKAIADWP
Sbjct: 181 GVHMSPDEMFGIRAGQASERRNCSSVSKRKRGSERYETVEVIRSVMEFGNEQLKAIADWP 240
Query: 241 KEKRAIGVEMRAQVVKQLQDIPELRSQDRAKLMQILFRSLEVIEGFLSIPTKLKLEYCNI 299
KEKRA+ VEMRAQVVKQLQDIP+LRSQDRAKLMQILFRSLE IEGFLSIPT+LKLEYCNI
Sbjct: 241 KEKRAMEVEMRAQVVKQLQDIPKLRSQDRAKLMQILFRSLEAIEGFLSIPTELKLEYCNI 300
BLAST of Pay0009598 vs. ExPASy TrEMBL
Match:
A0A5D3BZU3 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold409G00280 PE=4 SV=1)
HSP 1 Score: 407.1 bits (1045), Expect = 6.2e-110
Identity = 210/298 (70.47%), Postives = 229/298 (76.85%), Query Frame = 0
Query: 1 MASSSRALKHTWTKEEEAKLVDCLVELVSSGGWRSDNGTFRPGYLAQLQRMMAEKLSDTN 60
MASSSRA KH WTKEEEAKLV+CLVELVS+GGWRSDNGTFR GYL QLQRMMAEKL DTN
Sbjct: 1 MASSSRATKHAWTKEEEAKLVECLVELVSAGGWRSDNGTFRHGYLTQLQRMMAEKLPDTN 60
Query: 61 VQGSPTIDCRVKSLKKIYHAIVEMRGPSCSAFGWNEEFQCIIAERDLFDIKGLLHKSFPY 120
+QGSPTIDCR KGLLHKSFPY
Sbjct: 61 IQGSPTIDCRSHPA-----------------------------------AKGLLHKSFPY 120
Query: 121 YNDMSYVFGKDRTMGARSETFADVGSNVPNMFNDTVPLGDSHDEDIPTMYSQGVHMSPDE 180
Y+D+SYVFG D GA SETFAD GSNV NMFND VPLGDSH++DI T+YSQGVHMS DE
Sbjct: 121 YDDLSYVFGNDGATGAHSETFADGGSNVSNMFNDGVPLGDSHNQDILTIYSQGVHMSLDE 180
Query: 181 MFRIRAGQASDRRNCTSGSKRKRGSERYETIEVIMRVMEFGNEQLKAIADWPKEKRAIGV 240
+F IRAGQAS+RRN +SGSKRKRGS+ YE +EVI EFGN+QLK I DWPKEKRA V
Sbjct: 181 IFGIRAGQASERRNYSSGSKRKRGSKHYEMVEVISSATEFGNDQLKTITDWPKEKRATEV 240
Query: 241 EMRAQVVKQLQDIPELRSQDRAKLMQILFRSLEVIEGFLSIPTKLKLEYCNILLQNNV 299
E+R +VVKQLQDIP+LRSQDRAKLMQILFRS+E IEGFLSIPTKLKLEYCNILL+NNV
Sbjct: 241 ELRTEVVKQLQDIPQLRSQDRAKLMQILFRSVEAIEGFLSIPTKLKLEYCNILLENNV 263
BLAST of Pay0009598 vs. ExPASy TrEMBL
Match:
A0A5D3DG22 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold523G00290 PE=3 SV=1)
HSP 1 Score: 330.5 bits (846), Expect = 7.3e-87
Identity = 171/228 (75.00%), Postives = 179/228 (78.51%), Query Frame = 0
Query: 79 HAIVEMRGPSCSAFGWNEEFQCIIAERDLFD--------IKGLLHKSFPYYNDMSYVFGK 138
H +EMRGPSCS FGWNEEFQCIIAERDLFD KGLLHKSFPYY+D+SYVFGK
Sbjct: 361 HFNLEMRGPSCSGFGWNEEFQCIIAERDLFDSWVKSHPATKGLLHKSFPYYDDLSYVFGK 420
Query: 139 DRTMGARSETFADVGSNVPNMFNDTVPLGDSHDEDIPTMYSQGVHMSPDEMFRIRAGQAS 198
DR GARSETF DVGSNVPNMFNDT+PLGDSHDEDIPTMYSQGVH+SPDEMF IRA
Sbjct: 421 DRATGARSETFVDVGSNVPNMFNDTIPLGDSHDEDIPTMYSQGVHISPDEMFGIRA---- 480
Query: 199 DRRNCTSGSKRKRGSERYETIEVIMRVMEFGNEQLKAIADWPKEKRAIGVEMRAQVVKQL 258
EVI VMEFGNEQLKAIADW KEKRA+ +EMRAQVVKQL
Sbjct: 481 ---------------------EVIRSVMEFGNEQLKAIADWTKEKRAMEIEMRAQVVKQL 540
Query: 259 QDIPELRSQDRAKLMQILFRSLEVIEGFLSIPTKLKLEYCNILLQNNV 299
QDIPELRSQ R KLMQILFRSLE I GFLSIPT+LKLEYCNILLQNNV
Sbjct: 541 QDIPELRSQYRTKLMQILFRSLEAIGGFLSIPTELKLEYCNILLQNNV 563
BLAST of Pay0009598 vs. ExPASy TrEMBL
Match:
A0A5D3DPR5 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold259G00580 PE=4 SV=1)
HSP 1 Score: 330.1 bits (845), Expect = 9.6e-87
Identity = 158/303 (52.15%), Postives = 219/303 (72.28%), Query Frame = 0
Query: 1 MASSSRALKHTWTKEEEAKLVDCLVELVSSGGWRSDNGTFRPGYLAQLQRMMAEKLSDTN 60
M SSSR KHTWTKEEEA LV+CLVELV++GGWRSDNGTFRPGYL QL RMMA K+ +N
Sbjct: 1 MTSSSRLPKHTWTKEEEAGLVECLVELVNAGGWRSDNGTFRPGYLNQLARMMAFKIPGSN 60
Query: 61 VQGSPTIDCRVKSLKKIYHAIVEMRGPSCSAFGWNEEFQCIIAERDLFD------IKGLL 120
+ S TID R+K +K+++HA+ EMRGP+CS FGWN+E +CI+AE+++FD KGLL
Sbjct: 61 IHAS-TIDSRIKLMKRMFHALAEMRGPNCSGFGWNDEKKCIVAEKEVFDDWSHPAAKGLL 120
Query: 121 HKSFPYYNDMSYVFGKDRTMGARSETFADVGSNVPNMFNDTVPLGDSHDEDIPTMYSQGV 180
+KSF +Y+++SYVFGKDR G R+E+FAD+GSN P + D V D D P MYS G+
Sbjct: 121 NKSFVHYDELSYVFGKDRATGGRAESFADIGSNDPPGY-DAVAADAMPDTDFPPMYSPGL 180
Query: 181 HMSPDEMFRIRAGQASDRRNCTSGSKRKRGSERYETIEVIMRVMEFGNEQLKAIADWPKE 240
+MSPD++ R + S+RRN +SGSKRKR ++ +++ +E+GNEQL IA+WP
Sbjct: 181 NMSPDDLMETRTARVSERRNVSSGSKRKRPGHATDSGDIVRTAIEYGNEQLHRIAEWPIL 240
Query: 241 KRAIGVEMRAQVVKQLQDIPELRSQDRAKLMQILFRSLEVIEGFLSIPTKLKLEYCNILL 298
+R + R ++V+ L+ IPEL DR +LM+IL R+++ ++ FL +P +K YC+++L
Sbjct: 241 QRQDATQTRQEIVRHLEAIPELTLMDRCRLMRILMRNVDDMKAFLEVPDHMKYPYCSLIL 300
BLAST of Pay0009598 vs. NCBI nr
Match:
XP_008441954.1 (PREDICTED: uncharacterized protein LOC103485953 [Cucumis melo] >KAA0047736.1 retrotransposon protein [Cucumis melo var. makuwa] >TYK08388.1 retrotransposon protein [Cucumis melo var. makuwa])
HSP 1 Score: 524.2 bits (1349), Expect = 7.1e-145
Identity = 261/306 (85.29%), Postives = 274/306 (89.54%), Query Frame = 0
Query: 1 MASSSRALKHTWTKEEEAKLVDCLVELVSSGGWRSDNGTFRPGYLAQLQRMMAEKLSDTN 60
MAS SRA KHTWTKEEE K V+CLVELVSSGGWRSDNGTF+PGYLAQLQRMMAEKL TN
Sbjct: 1 MASLSRAPKHTWTKEEEEKFVECLVELVSSGGWRSDNGTFQPGYLAQLQRMMAEKLPGTN 60
Query: 61 VQGSPTIDCRVKSLKKIYHAIVEMRGPSCSAFGWNEEFQCIIAERDLFD--------IKG 120
+Q S TIDC VKSLKK YHAI EMRGPSCS FGWNEEFQCIIAERDLFD KG
Sbjct: 61 IQESSTIDCHVKSLKKTYHAIAEMRGPSCSGFGWNEEFQCIIAERDLFDSWIKSHPAAKG 120
Query: 121 LLHKSFPYYNDMSYVFGKDRTMGARSETFADVGSNVPNMFNDTVPLGDSHDEDIPTMYSQ 180
LLHKSFPYY+D+SYVFGKDR GARSETF +VGSNV NMFNDT+PLGDSHDEDIPTMYSQ
Sbjct: 121 LLHKSFPYYDDLSYVFGKDRATGARSETFPNVGSNVSNMFNDTIPLGDSHDEDIPTMYSQ 180
Query: 181 GVHMSPDEMFRIRAGQASDRRNCTSGSKRKRGSERYETIEVIMRVMEFGNEQLKAIADWP 240
GVHMSPDEMF IRAGQAS+RRNC+S SKRKRGSERYET+EVI VMEFGNEQLKAIADWP
Sbjct: 181 GVHMSPDEMFGIRAGQASERRNCSSVSKRKRGSERYETVEVIRSVMEFGNEQLKAIADWP 240
Query: 241 KEKRAIGVEMRAQVVKQLQDIPELRSQDRAKLMQILFRSLEVIEGFLSIPTKLKLEYCNI 299
KEKRA+ VEMRAQVVKQLQDIP+LRSQDRAKLMQILFRSLE IEGFLSIPT+LKLEYCNI
Sbjct: 241 KEKRAMEVEMRAQVVKQLQDIPKLRSQDRAKLMQILFRSLEAIEGFLSIPTELKLEYCNI 300
BLAST of Pay0009598 vs. NCBI nr
Match:
KAA0031678.1 (retrotransposon protein [Cucumis melo var. makuwa] >TYK04432.1 retrotransposon protein [Cucumis melo var. makuwa])
HSP 1 Score: 407.1 bits (1045), Expect = 1.3e-109
Identity = 210/298 (70.47%), Postives = 229/298 (76.85%), Query Frame = 0
Query: 1 MASSSRALKHTWTKEEEAKLVDCLVELVSSGGWRSDNGTFRPGYLAQLQRMMAEKLSDTN 60
MASSSRA KH WTKEEEAKLV+CLVELVS+GGWRSDNGTFR GYL QLQRMMAEKL DTN
Sbjct: 1 MASSSRATKHAWTKEEEAKLVECLVELVSAGGWRSDNGTFRHGYLTQLQRMMAEKLPDTN 60
Query: 61 VQGSPTIDCRVKSLKKIYHAIVEMRGPSCSAFGWNEEFQCIIAERDLFDIKGLLHKSFPY 120
+QGSPTIDCR KGLLHKSFPY
Sbjct: 61 IQGSPTIDCRSHPA-----------------------------------AKGLLHKSFPY 120
Query: 121 YNDMSYVFGKDRTMGARSETFADVGSNVPNMFNDTVPLGDSHDEDIPTMYSQGVHMSPDE 180
Y+D+SYVFG D GA SETFAD GSNV NMFND VPLGDSH++DI T+YSQGVHMS DE
Sbjct: 121 YDDLSYVFGNDGATGAHSETFADGGSNVSNMFNDGVPLGDSHNQDILTIYSQGVHMSLDE 180
Query: 181 MFRIRAGQASDRRNCTSGSKRKRGSERYETIEVIMRVMEFGNEQLKAIADWPKEKRAIGV 240
+F IRAGQAS+RRN +SGSKRKRGS+ YE +EVI EFGN+QLK I DWPKEKRA V
Sbjct: 181 IFGIRAGQASERRNYSSGSKRKRGSKHYEMVEVISSATEFGNDQLKTITDWPKEKRATEV 240
Query: 241 EMRAQVVKQLQDIPELRSQDRAKLMQILFRSLEVIEGFLSIPTKLKLEYCNILLQNNV 299
E+R +VVKQLQDIP+LRSQDRAKLMQILFRS+E IEGFLSIPTKLKLEYCNILL+NNV
Sbjct: 241 ELRTEVVKQLQDIPQLRSQDRAKLMQILFRSVEAIEGFLSIPTKLKLEYCNILLENNV 263
BLAST of Pay0009598 vs. NCBI nr
Match:
KAA0062747.1 (retrotransposon protein [Cucumis melo var. makuwa] >TYK22546.1 retrotransposon protein [Cucumis melo var. makuwa])
HSP 1 Score: 330.5 bits (846), Expect = 1.5e-86
Identity = 171/228 (75.00%), Postives = 179/228 (78.51%), Query Frame = 0
Query: 79 HAIVEMRGPSCSAFGWNEEFQCIIAERDLFD--------IKGLLHKSFPYYNDMSYVFGK 138
H +EMRGPSCS FGWNEEFQCIIAERDLFD KGLLHKSFPYY+D+SYVFGK
Sbjct: 361 HFNLEMRGPSCSGFGWNEEFQCIIAERDLFDSWVKSHPATKGLLHKSFPYYDDLSYVFGK 420
Query: 139 DRTMGARSETFADVGSNVPNMFNDTVPLGDSHDEDIPTMYSQGVHMSPDEMFRIRAGQAS 198
DR GARSETF DVGSNVPNMFNDT+PLGDSHDEDIPTMYSQGVH+SPDEMF IRA
Sbjct: 421 DRATGARSETFVDVGSNVPNMFNDTIPLGDSHDEDIPTMYSQGVHISPDEMFGIRA---- 480
Query: 199 DRRNCTSGSKRKRGSERYETIEVIMRVMEFGNEQLKAIADWPKEKRAIGVEMRAQVVKQL 258
EVI VMEFGNEQLKAIADW KEKRA+ +EMRAQVVKQL
Sbjct: 481 ---------------------EVIRSVMEFGNEQLKAIADWTKEKRAMEIEMRAQVVKQL 540
Query: 259 QDIPELRSQDRAKLMQILFRSLEVIEGFLSIPTKLKLEYCNILLQNNV 299
QDIPELRSQ R KLMQILFRSLE I GFLSIPT+LKLEYCNILLQNNV
Sbjct: 541 QDIPELRSQYRTKLMQILFRSLEAIGGFLSIPTELKLEYCNILLQNNV 563
BLAST of Pay0009598 vs. NCBI nr
Match:
KAA0035621.1 (retrotransposon protein [Cucumis melo var. makuwa] >KAA0041647.1 retrotransposon protein [Cucumis melo var. makuwa] >KAA0046728.1 retrotransposon protein [Cucumis melo var. makuwa] >KAA0052099.1 retrotransposon protein [Cucumis melo var. makuwa] >KAA0054495.1 retrotransposon protein [Cucumis melo var. makuwa])
HSP 1 Score: 330.1 bits (845), Expect = 2.0e-86
Identity = 158/303 (52.15%), Postives = 219/303 (72.28%), Query Frame = 0
Query: 1 MASSSRALKHTWTKEEEAKLVDCLVELVSSGGWRSDNGTFRPGYLAQLQRMMAEKLSDTN 60
M SSSR KHTWTKEEEA LV+CLVELV++GGWRSDNGTFRPGYL QL RMMA K+ +N
Sbjct: 1 MTSSSRLPKHTWTKEEEAGLVECLVELVNAGGWRSDNGTFRPGYLNQLARMMAFKIPGSN 60
Query: 61 VQGSPTIDCRVKSLKKIYHAIVEMRGPSCSAFGWNEEFQCIIAERDLFD------IKGLL 120
+ S TID R+K +K+++HA+ EMRGP+CS FGWN+E +CI+AE+++FD KGLL
Sbjct: 61 IHAS-TIDSRIKLMKRMFHALAEMRGPNCSGFGWNDEKKCIVAEKEVFDDWSHPAAKGLL 120
Query: 121 HKSFPYYNDMSYVFGKDRTMGARSETFADVGSNVPNMFNDTVPLGDSHDEDIPTMYSQGV 180
+KSF +Y+++SYVFGKDR G R+E+FAD+GSN P + D V D D P MYS G+
Sbjct: 121 NKSFVHYDELSYVFGKDRATGGRAESFADIGSNDPPGY-DAVAADAMPDTDFPPMYSPGL 180
Query: 181 HMSPDEMFRIRAGQASDRRNCTSGSKRKRGSERYETIEVIMRVMEFGNEQLKAIADWPKE 240
+MSPD++ R + S+RRN +SGSKRKR ++ +++ +E+GNEQL IA+WP
Sbjct: 181 NMSPDDLMETRTARVSERRNVSSGSKRKRPGHATDSGDIVRTAIEYGNEQLHRIAEWPIL 240
Query: 241 KRAIGVEMRAQVVKQLQDIPELRSQDRAKLMQILFRSLEVIEGFLSIPTKLKLEYCNILL 298
+R + R ++V+ L+ IPEL DR +LM+IL R+++ ++ FL +P +K YC+++L
Sbjct: 241 QRQDATQTRQEIVRHLEAIPELTLMDRCRLMRILMRNVDDMKAFLEVPDHMKYPYCSLIL 300
BLAST of Pay0009598 vs. NCBI nr
Match:
KAA0038122.1 (retrotransposon protein [Cucumis melo var. makuwa] >KAA0047362.1 retrotransposon protein [Cucumis melo var. makuwa] >KAA0055248.1 retrotransposon protein [Cucumis melo var. makuwa] >TYJ97185.1 retrotransposon protein [Cucumis melo var. makuwa] >TYK00369.1 retrotransposon protein [Cucumis melo var. makuwa])
HSP 1 Score: 327.8 bits (839), Expect = 9.8e-86
Identity = 158/307 (51.47%), Postives = 221/307 (71.99%), Query Frame = 0
Query: 1 MASSSRALKHTWTKEEEAKLVDCLVELVSSGGWRSDNGTFRPGYLAQLQRMMAEKLSDTN 60
M SSSR KHTWTKEEEA LV+CLVELV++GGWRSDNGTFRPGYL QL RMMA K+ +N
Sbjct: 1 MTSSSRLPKHTWTKEEEAGLVECLVELVNAGGWRSDNGTFRPGYLNQLARMMAFKIPGSN 60
Query: 61 VQGSPTIDCRVKSLKKIYHAIVEMRGPSCSAFGWNEEFQCIIAERDLFD------IKGLL 120
+ S TID R+K +K+++HA+ EMRGP+CS FGWN+E +CI+AE+++FD KGLL
Sbjct: 61 IHAS-TIDSRIKLMKRMFHALAEMRGPNCSGFGWNDEKKCIVAEKEVFDDWSHPAAKGLL 120
Query: 121 HKSFPYYNDMSYVFGKDRTMGARSETFADVGSNVPNMFN----DTVPLGDSHDEDIPTMY 180
+KSF +Y+++SYVFGKDR G R+E+FAD+GSN P ++ D +P D D P MY
Sbjct: 121 NKSFVHYDELSYVFGKDRATGGRAESFADIGSNDPPGYDAGAADAMP-----DTDFPPMY 180
Query: 181 SQGVHMSPDEMFRIRAGQASDRRNCTSGSKRKRGSERYETIEVIMRVMEFGNEQLKAIAD 240
S G++MSPD++ R + S+RRN +SGSKRKR ++ +++ +E+GNEQL IA+
Sbjct: 181 SPGLNMSPDDLMETRTARVSERRNVSSGSKRKRPGHATDSGDIVRTAIEYGNEQLHRIAE 240
Query: 241 WPKEKRAIGVEMRAQVVKQLQDIPELRSQDRAKLMQILFRSLEVIEGFLSIPTKLKLEYC 298
WP +R + R ++V+ L+ IPEL DR +LM+IL R+++ ++ FL +P +K YC
Sbjct: 241 WPILQRQDATQTRQEIVRHLEAIPELTLMDRCRLMRILMRNVDDMKAFLEVPDHMKYPYC 300
The following BLAST results are available for this feature:
| Match Name | E-value | Identity | Description | |
|---|
| Match Name | E-value | Identity | Description | |
|---|
| A0A5A7U0H7 | 3.5e-145 | 85.29 | Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... | [more] |
| A0A1S3B4L3 | 3.5e-145 | 85.29 | uncharacterized protein LOC103485953 OS=Cucumis melo OX=3656 GN=LOC103485953 PE=... | [more] |
| A0A5D3BZU3 | 6.2e-110 | 70.47 | Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... | [more] |
| A0A5D3DG22 | 7.3e-87 | 75.00 | Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... | [more] |
| A0A5D3DPR5 | 9.6e-87 | 52.15 | Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... | [more] |
| Match Name | E-value | Identity | Description | |
|---|
| XP_008441954.1 | 7.1e-145 | 85.29 | PREDICTED: uncharacterized protein LOC103485953 [Cucumis melo] >KAA0047736.1 ret... | [more] |
| KAA0031678.1 | 1.3e-109 | 70.47 | retrotransposon protein [Cucumis melo var. makuwa] >TYK04432.1 retrotransposon p... | [more] |
| KAA0062747.1 | 1.5e-86 | 75.00 | retrotransposon protein [Cucumis melo var. makuwa] >TYK22546.1 retrotransposon p... | [more] |
| KAA0035621.1 | 2.0e-86 | 52.15 | retrotransposon protein [Cucumis melo var. makuwa] >KAA0041647.1 retrotransposon... | [more] |
| KAA0038122.1 | 9.8e-86 | 51.47 | retrotransposon protein [Cucumis melo var. makuwa] >KAA0047362.1 retrotransposon... | [more] |
| Match Name | E-value | Identity | Description | |
|---|
